sequenzo 0.1.17__cp311-cp311-win_amd64.whl → 0.1.19__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,388 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_EXPR_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_EXPR_H
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-
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- namespace Eigen {
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-
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- /** \class TensorExpr
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- * \ingroup CXX11_Tensor_Module
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- *
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- * \brief Tensor expression classes.
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- *
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- * The TensorCwiseNullaryOp class applies a nullary operators to an expression.
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- * This is typically used to generate constants.
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- *
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- * The TensorCwiseUnaryOp class represents an expression where a unary operator
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- * (e.g. cwiseSqrt) is applied to an expression.
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- *
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- * The TensorCwiseBinaryOp class represents an expression where a binary
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- * operator (e.g. addition) is applied to a lhs and a rhs expression.
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- *
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- */
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- namespace internal {
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- template<typename NullaryOp, typename XprType>
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- struct traits<TensorCwiseNullaryOp<NullaryOp, XprType> >
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- : traits<XprType>
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- {
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- typedef traits<XprType> XprTraits;
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- typedef typename XprType::Scalar Scalar;
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- typedef typename XprType::Nested XprTypeNested;
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- typedef typename remove_reference<XprTypeNested>::type _XprTypeNested;
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- static const int NumDimensions = XprTraits::NumDimensions;
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- static const int Layout = XprTraits::Layout;
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- typedef typename XprTraits::PointerType PointerType;
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- enum {
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- Flags = 0
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- };
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- };
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-
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- } // end namespace internal
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-
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-
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-
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- template<typename NullaryOp, typename XprType>
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- class TensorCwiseNullaryOp : public TensorBase<TensorCwiseNullaryOp<NullaryOp, XprType>, ReadOnlyAccessors>
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- {
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- public:
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- typedef typename Eigen::internal::traits<TensorCwiseNullaryOp>::Scalar Scalar;
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- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
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- typedef typename XprType::CoeffReturnType CoeffReturnType;
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- typedef TensorCwiseNullaryOp<NullaryOp, XprType> Nested;
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- typedef typename Eigen::internal::traits<TensorCwiseNullaryOp>::StorageKind StorageKind;
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- typedef typename Eigen::internal::traits<TensorCwiseNullaryOp>::Index Index;
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-
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorCwiseNullaryOp(const XprType& xpr, const NullaryOp& func = NullaryOp())
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- : m_xpr(xpr), m_functor(func) {}
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-
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- EIGEN_DEVICE_FUNC
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- const typename internal::remove_all<typename XprType::Nested>::type&
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- nestedExpression() const { return m_xpr; }
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-
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- EIGEN_DEVICE_FUNC
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- const NullaryOp& functor() const { return m_functor; }
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-
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- protected:
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- typename XprType::Nested m_xpr;
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- const NullaryOp m_functor;
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- };
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-
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-
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-
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- namespace internal {
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- template<typename UnaryOp, typename XprType>
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- struct traits<TensorCwiseUnaryOp<UnaryOp, XprType> >
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- : traits<XprType>
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- {
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- // TODO(phli): Add InputScalar, InputPacket. Check references to
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- // current Scalar/Packet to see if the intent is Input or Output.
86
- typedef typename result_of<UnaryOp(typename XprType::Scalar)>::type Scalar;
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- typedef traits<XprType> XprTraits;
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- typedef typename XprType::Nested XprTypeNested;
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- typedef typename remove_reference<XprTypeNested>::type _XprTypeNested;
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- static const int NumDimensions = XprTraits::NumDimensions;
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- static const int Layout = XprTraits::Layout;
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- typedef typename TypeConversion<Scalar,
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- typename XprTraits::PointerType
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- >::type
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- PointerType;
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- };
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-
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- template<typename UnaryOp, typename XprType>
99
- struct eval<TensorCwiseUnaryOp<UnaryOp, XprType>, Eigen::Dense>
100
- {
101
- typedef const TensorCwiseUnaryOp<UnaryOp, XprType>& type;
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- };
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-
104
- template<typename UnaryOp, typename XprType>
105
- struct nested<TensorCwiseUnaryOp<UnaryOp, XprType>, 1, typename eval<TensorCwiseUnaryOp<UnaryOp, XprType> >::type>
106
- {
107
- typedef TensorCwiseUnaryOp<UnaryOp, XprType> type;
108
- };
109
-
110
- } // end namespace internal
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-
112
-
113
-
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- template<typename UnaryOp, typename XprType>
115
- class TensorCwiseUnaryOp : public TensorBase<TensorCwiseUnaryOp<UnaryOp, XprType>, ReadOnlyAccessors>
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- {
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- public:
118
- // TODO(phli): Add InputScalar, InputPacket. Check references to
119
- // current Scalar/Packet to see if the intent is Input or Output.
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- typedef typename Eigen::internal::traits<TensorCwiseUnaryOp>::Scalar Scalar;
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- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
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- typedef Scalar CoeffReturnType;
123
- typedef typename Eigen::internal::nested<TensorCwiseUnaryOp>::type Nested;
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- typedef typename Eigen::internal::traits<TensorCwiseUnaryOp>::StorageKind StorageKind;
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- typedef typename Eigen::internal::traits<TensorCwiseUnaryOp>::Index Index;
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-
127
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorCwiseUnaryOp(const XprType& xpr, const UnaryOp& func = UnaryOp())
128
- : m_xpr(xpr), m_functor(func) {}
129
-
130
- EIGEN_DEVICE_FUNC
131
- const UnaryOp& functor() const { return m_functor; }
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-
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- /** \returns the nested expression */
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- EIGEN_DEVICE_FUNC
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- const typename internal::remove_all<typename XprType::Nested>::type&
136
- nestedExpression() const { return m_xpr; }
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-
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- protected:
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- typename XprType::Nested m_xpr;
140
- const UnaryOp m_functor;
141
- };
142
-
143
-
144
- namespace internal {
145
- template<typename BinaryOp, typename LhsXprType, typename RhsXprType>
146
- struct traits<TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType> >
147
- {
148
- // Type promotion to handle the case where the types of the lhs and the rhs
149
- // are different.
150
- // TODO(phli): Add Lhs/RhsScalar, Lhs/RhsPacket. Check references to
151
- // current Scalar/Packet to see if the intent is Inputs or Output.
152
- typedef typename result_of<
153
- BinaryOp(typename LhsXprType::Scalar,
154
- typename RhsXprType::Scalar)>::type Scalar;
155
- typedef traits<LhsXprType> XprTraits;
156
- typedef typename promote_storage_type<
157
- typename traits<LhsXprType>::StorageKind,
158
- typename traits<RhsXprType>::StorageKind>::ret StorageKind;
159
- typedef typename promote_index_type<
160
- typename traits<LhsXprType>::Index,
161
- typename traits<RhsXprType>::Index>::type Index;
162
- typedef typename LhsXprType::Nested LhsNested;
163
- typedef typename RhsXprType::Nested RhsNested;
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- typedef typename remove_reference<LhsNested>::type _LhsNested;
165
- typedef typename remove_reference<RhsNested>::type _RhsNested;
166
- static const int NumDimensions = XprTraits::NumDimensions;
167
- static const int Layout = XprTraits::Layout;
168
- typedef typename TypeConversion<Scalar,
169
- typename conditional<Pointer_type_promotion<typename LhsXprType::Scalar, Scalar>::val,
170
- typename traits<LhsXprType>::PointerType,
171
- typename traits<RhsXprType>::PointerType>::type
172
- >::type
173
- PointerType;
174
- enum {
175
- Flags = 0
176
- };
177
- };
178
-
179
- template<typename BinaryOp, typename LhsXprType, typename RhsXprType>
180
- struct eval<TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType>, Eigen::Dense>
181
- {
182
- typedef const TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType>& type;
183
- };
184
-
185
- template<typename BinaryOp, typename LhsXprType, typename RhsXprType>
186
- struct nested<TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType>, 1, typename eval<TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType> >::type>
187
- {
188
- typedef TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType> type;
189
- };
190
-
191
- } // end namespace internal
192
-
193
-
194
-
195
- template<typename BinaryOp, typename LhsXprType, typename RhsXprType>
196
- class TensorCwiseBinaryOp : public TensorBase<TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType>, ReadOnlyAccessors>
197
- {
198
- public:
199
- // TODO(phli): Add Lhs/RhsScalar, Lhs/RhsPacket. Check references to
200
- // current Scalar/Packet to see if the intent is Inputs or Output.
201
- typedef typename Eigen::internal::traits<TensorCwiseBinaryOp>::Scalar Scalar;
202
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
203
- typedef Scalar CoeffReturnType;
204
- typedef typename Eigen::internal::nested<TensorCwiseBinaryOp>::type Nested;
205
- typedef typename Eigen::internal::traits<TensorCwiseBinaryOp>::StorageKind StorageKind;
206
- typedef typename Eigen::internal::traits<TensorCwiseBinaryOp>::Index Index;
207
-
208
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorCwiseBinaryOp(const LhsXprType& lhs, const RhsXprType& rhs, const BinaryOp& func = BinaryOp())
209
- : m_lhs_xpr(lhs), m_rhs_xpr(rhs), m_functor(func) {}
210
-
211
- EIGEN_DEVICE_FUNC
212
- const BinaryOp& functor() const { return m_functor; }
213
-
214
- /** \returns the nested expressions */
215
- EIGEN_DEVICE_FUNC
216
- const typename internal::remove_all<typename LhsXprType::Nested>::type&
217
- lhsExpression() const { return m_lhs_xpr; }
218
-
219
- EIGEN_DEVICE_FUNC
220
- const typename internal::remove_all<typename RhsXprType::Nested>::type&
221
- rhsExpression() const { return m_rhs_xpr; }
222
-
223
- protected:
224
- typename LhsXprType::Nested m_lhs_xpr;
225
- typename RhsXprType::Nested m_rhs_xpr;
226
- const BinaryOp m_functor;
227
- };
228
-
229
-
230
- namespace internal {
231
- template<typename TernaryOp, typename Arg1XprType, typename Arg2XprType, typename Arg3XprType>
232
- struct traits<TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType> >
233
- {
234
- // Type promotion to handle the case where the types of the args are different.
235
- typedef typename result_of<
236
- TernaryOp(typename Arg1XprType::Scalar,
237
- typename Arg2XprType::Scalar,
238
- typename Arg3XprType::Scalar)>::type Scalar;
239
- typedef traits<Arg1XprType> XprTraits;
240
- typedef typename traits<Arg1XprType>::StorageKind StorageKind;
241
- typedef typename traits<Arg1XprType>::Index Index;
242
- typedef typename Arg1XprType::Nested Arg1Nested;
243
- typedef typename Arg2XprType::Nested Arg2Nested;
244
- typedef typename Arg3XprType::Nested Arg3Nested;
245
- typedef typename remove_reference<Arg1Nested>::type _Arg1Nested;
246
- typedef typename remove_reference<Arg2Nested>::type _Arg2Nested;
247
- typedef typename remove_reference<Arg3Nested>::type _Arg3Nested;
248
- static const int NumDimensions = XprTraits::NumDimensions;
249
- static const int Layout = XprTraits::Layout;
250
- typedef typename TypeConversion<Scalar,
251
- typename conditional<Pointer_type_promotion<typename Arg2XprType::Scalar, Scalar>::val,
252
- typename traits<Arg2XprType>::PointerType,
253
- typename traits<Arg3XprType>::PointerType>::type
254
- >::type
255
- PointerType;
256
- enum {
257
- Flags = 0
258
- };
259
- };
260
-
261
- template<typename TernaryOp, typename Arg1XprType, typename Arg2XprType, typename Arg3XprType>
262
- struct eval<TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType>, Eigen::Dense>
263
- {
264
- typedef const TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType>& type;
265
- };
266
-
267
- template<typename TernaryOp, typename Arg1XprType, typename Arg2XprType, typename Arg3XprType>
268
- struct nested<TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType>, 1, typename eval<TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType> >::type>
269
- {
270
- typedef TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType> type;
271
- };
272
-
273
- } // end namespace internal
274
-
275
-
276
-
277
- template<typename TernaryOp, typename Arg1XprType, typename Arg2XprType, typename Arg3XprType>
278
- class TensorCwiseTernaryOp : public TensorBase<TensorCwiseTernaryOp<TernaryOp, Arg1XprType, Arg2XprType, Arg3XprType>, ReadOnlyAccessors>
279
- {
280
- public:
281
- typedef typename Eigen::internal::traits<TensorCwiseTernaryOp>::Scalar Scalar;
282
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
283
- typedef Scalar CoeffReturnType;
284
- typedef typename Eigen::internal::nested<TensorCwiseTernaryOp>::type Nested;
285
- typedef typename Eigen::internal::traits<TensorCwiseTernaryOp>::StorageKind StorageKind;
286
- typedef typename Eigen::internal::traits<TensorCwiseTernaryOp>::Index Index;
287
-
288
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorCwiseTernaryOp(const Arg1XprType& arg1, const Arg2XprType& arg2, const Arg3XprType& arg3, const TernaryOp& func = TernaryOp())
289
- : m_arg1_xpr(arg1), m_arg2_xpr(arg2), m_arg3_xpr(arg3), m_functor(func) {}
290
-
291
- EIGEN_DEVICE_FUNC
292
- const TernaryOp& functor() const { return m_functor; }
293
-
294
- /** \returns the nested expressions */
295
- EIGEN_DEVICE_FUNC
296
- const typename internal::remove_all<typename Arg1XprType::Nested>::type&
297
- arg1Expression() const { return m_arg1_xpr; }
298
-
299
- EIGEN_DEVICE_FUNC
300
- const typename internal::remove_all<typename Arg2XprType::Nested>::type&
301
- arg2Expression() const { return m_arg2_xpr; }
302
-
303
- EIGEN_DEVICE_FUNC
304
- const typename internal::remove_all<typename Arg3XprType::Nested>::type&
305
- arg3Expression() const { return m_arg3_xpr; }
306
-
307
- protected:
308
- typename Arg1XprType::Nested m_arg1_xpr;
309
- typename Arg2XprType::Nested m_arg2_xpr;
310
- typename Arg3XprType::Nested m_arg3_xpr;
311
- const TernaryOp m_functor;
312
- };
313
-
314
-
315
- namespace internal {
316
- template<typename IfXprType, typename ThenXprType, typename ElseXprType>
317
- struct traits<TensorSelectOp<IfXprType, ThenXprType, ElseXprType> >
318
- : traits<ThenXprType>
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- {
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- typedef typename traits<ThenXprType>::Scalar Scalar;
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- typedef traits<ThenXprType> XprTraits;
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- typedef typename promote_storage_type<typename traits<ThenXprType>::StorageKind,
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- typename traits<ElseXprType>::StorageKind>::ret StorageKind;
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- typedef typename promote_index_type<typename traits<ElseXprType>::Index,
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- typename traits<ThenXprType>::Index>::type Index;
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- typedef typename IfXprType::Nested IfNested;
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- typedef typename ThenXprType::Nested ThenNested;
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- typedef typename ElseXprType::Nested ElseNested;
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- static const int NumDimensions = XprTraits::NumDimensions;
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- static const int Layout = XprTraits::Layout;
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- typedef typename conditional<Pointer_type_promotion<typename ThenXprType::Scalar, Scalar>::val,
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- typename traits<ThenXprType>::PointerType,
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- typename traits<ElseXprType>::PointerType>::type PointerType;
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- };
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-
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- template<typename IfXprType, typename ThenXprType, typename ElseXprType>
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- struct eval<TensorSelectOp<IfXprType, ThenXprType, ElseXprType>, Eigen::Dense>
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- {
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- typedef const TensorSelectOp<IfXprType, ThenXprType, ElseXprType>& type;
340
- };
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-
342
- template<typename IfXprType, typename ThenXprType, typename ElseXprType>
343
- struct nested<TensorSelectOp<IfXprType, ThenXprType, ElseXprType>, 1, typename eval<TensorSelectOp<IfXprType, ThenXprType, ElseXprType> >::type>
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- {
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- typedef TensorSelectOp<IfXprType, ThenXprType, ElseXprType> type;
346
- };
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-
348
- } // end namespace internal
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-
350
-
351
- template<typename IfXprType, typename ThenXprType, typename ElseXprType>
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- class TensorSelectOp : public TensorBase<TensorSelectOp<IfXprType, ThenXprType, ElseXprType>, ReadOnlyAccessors>
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- {
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- public:
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- typedef typename Eigen::internal::traits<TensorSelectOp>::Scalar Scalar;
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- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
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- typedef typename internal::promote_storage_type<typename ThenXprType::CoeffReturnType,
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- typename ElseXprType::CoeffReturnType>::ret CoeffReturnType;
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- typedef typename Eigen::internal::nested<TensorSelectOp>::type Nested;
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- typedef typename Eigen::internal::traits<TensorSelectOp>::StorageKind StorageKind;
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- typedef typename Eigen::internal::traits<TensorSelectOp>::Index Index;
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-
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- EIGEN_DEVICE_FUNC
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- TensorSelectOp(const IfXprType& a_condition,
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- const ThenXprType& a_then,
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- const ElseXprType& a_else)
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- : m_condition(a_condition), m_then(a_then), m_else(a_else)
368
- { }
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-
370
- EIGEN_DEVICE_FUNC
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- const IfXprType& ifExpression() const { return m_condition; }
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-
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- EIGEN_DEVICE_FUNC
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- const ThenXprType& thenExpression() const { return m_then; }
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-
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- EIGEN_DEVICE_FUNC
377
- const ElseXprType& elseExpression() const { return m_else; }
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-
379
- protected:
380
- typename IfXprType::Nested m_condition;
381
- typename ThenXprType::Nested m_then;
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- typename ElseXprType::Nested m_else;
383
- };
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-
385
-
386
- } // end namespace Eigen
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-
388
- #endif // EIGEN_CXX11_TENSOR_TENSOR_EXPR_H