scipy 1.16.2__cp314-cp314t-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp314t-win_arm64.lib +0 -0
- scipy/_cyutility.cp314t-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp314t-win_arm64.lib +0 -0
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- scipy/_lib/_test_deprecation_call.cp314t-win_arm64.lib +0 -0
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- scipy/_lib/_test_deprecation_def.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
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- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp314t-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
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- scipy/fft/_realtransforms_backend.py +63 -0
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- scipy/fft/tests/test_helper.py +558 -0
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- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
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- scipy/integrate/__init__.py +122 -0
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- scipy/integrate/_ivp/__init__.py +8 -0
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- scipy/integrate/_lebedev.py +5450 -0
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- scipy/integrate/_ode.py +1395 -0
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- scipy/integrate/tests/test_tanhsinh.py +1171 -0
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sample = (2.0 * sample - 1.0) / (2.0 * 2.0)
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assert_allclose(qmc.discrepancy(sample, method='WD'), 1.3680,
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+
atol=1e-4)
|
121
|
+
assert_allclose(qmc.discrepancy(sample, method='CD'), 0.3172,
|
122
|
+
atol=1e-4)
|
123
|
+
|
124
|
+
# From Tim P. et al. Minimizing the L2 and Linf star discrepancies
|
125
|
+
# of a single point in the unit hypercube. JCAM, 2005
|
126
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+
# Table 1 on Page 283
|
127
|
+
for dim in [2, 4, 8, 16, 32, 64]:
|
128
|
+
ref = np.sqrt(3**(-dim))
|
129
|
+
assert_allclose(qmc.discrepancy(np.array([[1]*dim]),
|
130
|
+
method='L2-star'), ref)
|
131
|
+
|
132
|
+
def test_discrepancy_errors(self):
|
133
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+
sample = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
|
134
|
+
|
135
|
+
with pytest.raises(
|
136
|
+
ValueError, match=r"Sample is not in unit hypercube"
|
137
|
+
):
|
138
|
+
qmc.discrepancy(sample)
|
139
|
+
|
140
|
+
with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
|
141
|
+
qmc.discrepancy([1, 3])
|
142
|
+
|
143
|
+
sample = [[0, 0], [1, 1], [0.5, 0.5]]
|
144
|
+
with pytest.raises(ValueError, match=r"'toto' is not a valid ..."):
|
145
|
+
qmc.discrepancy(sample, method="toto")
|
146
|
+
|
147
|
+
@pytest.mark.thread_unsafe
|
148
|
+
def test_discrepancy_parallel(self, monkeypatch):
|
149
|
+
sample = np.array([[2, 1, 1, 2, 2, 2],
|
150
|
+
[1, 2, 2, 2, 2, 2],
|
151
|
+
[2, 1, 1, 1, 1, 1],
|
152
|
+
[1, 1, 1, 1, 2, 2],
|
153
|
+
[1, 2, 2, 2, 1, 1],
|
154
|
+
[2, 2, 2, 2, 1, 1],
|
155
|
+
[2, 2, 2, 1, 2, 2]])
|
156
|
+
sample = (2.0 * sample - 1.0) / (2.0 * 2.0)
|
157
|
+
|
158
|
+
assert_allclose(qmc.discrepancy(sample, method='MD', workers=8),
|
159
|
+
2.5000,
|
160
|
+
atol=1e-4)
|
161
|
+
assert_allclose(qmc.discrepancy(sample, method='WD', workers=8),
|
162
|
+
1.3680,
|
163
|
+
atol=1e-4)
|
164
|
+
assert_allclose(qmc.discrepancy(sample, method='CD', workers=8),
|
165
|
+
0.3172,
|
166
|
+
atol=1e-4)
|
167
|
+
|
168
|
+
# From Tim P. et al. Minimizing the L2 and Linf star discrepancies
|
169
|
+
# of a single point in the unit hypercube. JCAM, 2005
|
170
|
+
# Table 1 on Page 283
|
171
|
+
for dim in [2, 4, 8, 16, 32, 64]:
|
172
|
+
ref = np.sqrt(3 ** (-dim))
|
173
|
+
assert_allclose(qmc.discrepancy(np.array([[1] * dim]),
|
174
|
+
method='L2-star', workers=-1), ref)
|
175
|
+
|
176
|
+
monkeypatch.setattr(os, 'cpu_count', lambda: None)
|
177
|
+
with pytest.raises(NotImplementedError, match="Cannot determine the"):
|
178
|
+
qmc.discrepancy(sample, workers=-1)
|
179
|
+
|
180
|
+
with pytest.raises(ValueError, match="Invalid number of workers..."):
|
181
|
+
qmc.discrepancy(sample, workers=-2)
|
182
|
+
|
183
|
+
def test_geometric_discrepancy_errors(self):
|
184
|
+
sample = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
|
185
|
+
|
186
|
+
with pytest.raises(ValueError, match=r"Sample is not in unit hypercube"):
|
187
|
+
qmc.geometric_discrepancy(sample)
|
188
|
+
|
189
|
+
with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
|
190
|
+
qmc.geometric_discrepancy([1, 3])
|
191
|
+
|
192
|
+
sample = [[0, 0], [1, 1], [0.5, 0.5]]
|
193
|
+
with pytest.raises(ValueError, match=r"'toto' is not a valid ..."):
|
194
|
+
qmc.geometric_discrepancy(sample, method="toto")
|
195
|
+
|
196
|
+
sample = np.array([[0, 0], [0, 0], [0, 1]])
|
197
|
+
with pytest.warns(UserWarning, match="Sample contains duplicate points."):
|
198
|
+
qmc.geometric_discrepancy(sample)
|
199
|
+
|
200
|
+
sample = np.array([[0.5, 0.5]])
|
201
|
+
with pytest.raises(ValueError, match="Sample must contain at least two points"):
|
202
|
+
qmc.geometric_discrepancy(sample)
|
203
|
+
|
204
|
+
def test_geometric_discrepancy(self):
|
205
|
+
sample = np.array([[0, 0], [1, 1]])
|
206
|
+
assert_allclose(qmc.geometric_discrepancy(sample), np.sqrt(2))
|
207
|
+
assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), np.sqrt(2))
|
208
|
+
|
209
|
+
sample = np.array([[0, 0], [0, 1], [0.5, 1]])
|
210
|
+
assert_allclose(qmc.geometric_discrepancy(sample), 0.5)
|
211
|
+
assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), 0.75)
|
212
|
+
|
213
|
+
sample = np.array([[0, 0], [0.25, 0.25], [1, 1]])
|
214
|
+
assert_allclose(qmc.geometric_discrepancy(sample), np.sqrt(2) / 4)
|
215
|
+
assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), np.sqrt(2) / 2)
|
216
|
+
assert_allclose(qmc.geometric_discrepancy(sample, metric="chebyshev"), 0.25)
|
217
|
+
assert_allclose(
|
218
|
+
qmc.geometric_discrepancy(sample, method="mst", metric="chebyshev"), 0.5
|
219
|
+
)
|
220
|
+
|
221
|
+
rng = np.random.default_rng(191468432622931918890291693003068437394)
|
222
|
+
sample = qmc.LatinHypercube(d=3, rng=rng).random(50)
|
223
|
+
assert_allclose(qmc.geometric_discrepancy(sample), 0.05106012076093356)
|
224
|
+
assert_allclose(
|
225
|
+
qmc.geometric_discrepancy(sample, method='mst'), 0.19704396643366182
|
226
|
+
)
|
227
|
+
|
228
|
+
@pytest.mark.xfail(
|
229
|
+
reason="minimum_spanning_tree ignores zero distances (#18892)",
|
230
|
+
strict=True,
|
231
|
+
)
|
232
|
+
@pytest.mark.thread_unsafe
|
233
|
+
def test_geometric_discrepancy_mst_with_zero_distances(self):
|
234
|
+
sample = np.array([[0, 0], [0, 0], [0, 1]])
|
235
|
+
assert_allclose(qmc.geometric_discrepancy(sample, method='mst'), 0.5)
|
236
|
+
|
237
|
+
def test_update_discrepancy(self):
|
238
|
+
# From Fang et al. Design and modeling for computer experiments, 2006
|
239
|
+
space_1 = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
|
240
|
+
space_1 = (2.0 * space_1 - 1.0) / (2.0 * 6.0)
|
241
|
+
|
242
|
+
disc_init = qmc.discrepancy(space_1[:-1], iterative=True)
|
243
|
+
disc_iter = update_discrepancy(space_1[-1], space_1[:-1], disc_init)
|
244
|
+
|
245
|
+
assert_allclose(disc_iter, 0.0081, atol=1e-4)
|
246
|
+
|
247
|
+
# n<d
|
248
|
+
rng = np.random.default_rng(241557431858162136881731220526394276199)
|
249
|
+
space_1 = rng.random((4, 10))
|
250
|
+
|
251
|
+
disc_ref = qmc.discrepancy(space_1)
|
252
|
+
disc_init = qmc.discrepancy(space_1[:-1], iterative=True)
|
253
|
+
disc_iter = update_discrepancy(space_1[-1], space_1[:-1], disc_init)
|
254
|
+
|
255
|
+
assert_allclose(disc_iter, disc_ref, atol=1e-4)
|
256
|
+
|
257
|
+
# errors
|
258
|
+
with pytest.raises(ValueError, match=r"Sample is not in unit "
|
259
|
+
r"hypercube"):
|
260
|
+
update_discrepancy(space_1[-1], space_1[:-1] + 1, disc_init)
|
261
|
+
|
262
|
+
with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
|
263
|
+
update_discrepancy(space_1[-1], space_1[0], disc_init)
|
264
|
+
|
265
|
+
x_new = [1, 3]
|
266
|
+
with pytest.raises(ValueError, match=r"x_new is not in unit "
|
267
|
+
r"hypercube"):
|
268
|
+
update_discrepancy(x_new, space_1[:-1], disc_init)
|
269
|
+
|
270
|
+
x_new = [[0.5, 0.5]]
|
271
|
+
with pytest.raises(ValueError, match=r"x_new is not a 1D array"):
|
272
|
+
update_discrepancy(x_new, space_1[:-1], disc_init)
|
273
|
+
|
274
|
+
x_new = [0.3, 0.1, 0]
|
275
|
+
with pytest.raises(ValueError, match=r"x_new and sample must be "
|
276
|
+
r"broadcastable"):
|
277
|
+
update_discrepancy(x_new, space_1[:-1], disc_init)
|
278
|
+
|
279
|
+
def test_perm_discrepancy(self):
|
280
|
+
rng = np.random.default_rng(46449423132557934943847369749645759997)
|
281
|
+
qmc_gen = qmc.LatinHypercube(5, rng=rng)
|
282
|
+
sample = qmc_gen.random(10)
|
283
|
+
disc = qmc.discrepancy(sample)
|
284
|
+
|
285
|
+
for i in range(100):
|
286
|
+
row_1 = rng.integers(10)
|
287
|
+
row_2 = rng.integers(10)
|
288
|
+
col = rng.integers(5)
|
289
|
+
|
290
|
+
disc = _perturb_discrepancy(sample, row_1, row_2, col, disc)
|
291
|
+
sample[row_1, col], sample[row_2, col] = (
|
292
|
+
sample[row_2, col], sample[row_1, col])
|
293
|
+
disc_reference = qmc.discrepancy(sample)
|
294
|
+
assert_allclose(disc, disc_reference)
|
295
|
+
|
296
|
+
def test_discrepancy_alternative_implementation(self):
|
297
|
+
"""Alternative definitions from Matt Haberland."""
|
298
|
+
|
299
|
+
def disc_c2(x):
|
300
|
+
n, s = x.shape
|
301
|
+
xij = x
|
302
|
+
disc1 = np.sum(np.prod((1
|
303
|
+
+ 1/2*np.abs(xij-0.5)
|
304
|
+
- 1/2*np.abs(xij-0.5)**2), axis=1))
|
305
|
+
xij = x[None, :, :]
|
306
|
+
xkj = x[:, None, :]
|
307
|
+
disc2 = np.sum(np.sum(np.prod(1
|
308
|
+
+ 1/2*np.abs(xij - 0.5)
|
309
|
+
+ 1/2*np.abs(xkj - 0.5)
|
310
|
+
- 1/2*np.abs(xij - xkj), axis=2),
|
311
|
+
axis=0))
|
312
|
+
return (13/12)**s - 2/n * disc1 + 1/n**2*disc2
|
313
|
+
|
314
|
+
def disc_wd(x):
|
315
|
+
n, s = x.shape
|
316
|
+
xij = x[None, :, :]
|
317
|
+
xkj = x[:, None, :]
|
318
|
+
disc = np.sum(np.sum(np.prod(3/2
|
319
|
+
- np.abs(xij - xkj)
|
320
|
+
+ np.abs(xij - xkj)**2, axis=2),
|
321
|
+
axis=0))
|
322
|
+
return -(4/3)**s + 1/n**2 * disc
|
323
|
+
|
324
|
+
def disc_md(x):
|
325
|
+
n, s = x.shape
|
326
|
+
xij = x
|
327
|
+
disc1 = np.sum(np.prod((5/3
|
328
|
+
- 1/4*np.abs(xij-0.5)
|
329
|
+
- 1/4*np.abs(xij-0.5)**2), axis=1))
|
330
|
+
xij = x[None, :, :]
|
331
|
+
xkj = x[:, None, :]
|
332
|
+
disc2 = np.sum(np.sum(np.prod(15/8
|
333
|
+
- 1/4*np.abs(xij - 0.5)
|
334
|
+
- 1/4*np.abs(xkj - 0.5)
|
335
|
+
- 3/4*np.abs(xij - xkj)
|
336
|
+
+ 1/2*np.abs(xij - xkj)**2,
|
337
|
+
axis=2), axis=0))
|
338
|
+
return (19/12)**s - 2/n * disc1 + 1/n**2*disc2
|
339
|
+
|
340
|
+
def disc_star_l2(x):
|
341
|
+
n, s = x.shape
|
342
|
+
return np.sqrt(
|
343
|
+
3 ** (-s) - 2 ** (1 - s) / n
|
344
|
+
* np.sum(np.prod(1 - x ** 2, axis=1))
|
345
|
+
+ np.sum([
|
346
|
+
np.prod(1 - np.maximum(x[k, :], x[j, :]))
|
347
|
+
for k in range(n) for j in range(n)
|
348
|
+
]) / n ** 2
|
349
|
+
)
|
350
|
+
|
351
|
+
rng = np.random.default_rng(117065081482921065782761407107747179201)
|
352
|
+
sample = rng.random((30, 10))
|
353
|
+
|
354
|
+
disc_curr = qmc.discrepancy(sample, method='CD')
|
355
|
+
disc_alt = disc_c2(sample)
|
356
|
+
assert_allclose(disc_curr, disc_alt)
|
357
|
+
|
358
|
+
disc_curr = qmc.discrepancy(sample, method='WD')
|
359
|
+
disc_alt = disc_wd(sample)
|
360
|
+
assert_allclose(disc_curr, disc_alt)
|
361
|
+
|
362
|
+
disc_curr = qmc.discrepancy(sample, method='MD')
|
363
|
+
disc_alt = disc_md(sample)
|
364
|
+
assert_allclose(disc_curr, disc_alt)
|
365
|
+
|
366
|
+
disc_curr = qmc.discrepancy(sample, method='L2-star')
|
367
|
+
disc_alt = disc_star_l2(sample)
|
368
|
+
assert_allclose(disc_curr, disc_alt)
|
369
|
+
|
370
|
+
def test_n_primes(self):
|
371
|
+
primes = n_primes(10)
|
372
|
+
assert primes[-1] == 29
|
373
|
+
|
374
|
+
primes = n_primes(168)
|
375
|
+
assert primes[-1] == 997
|
376
|
+
|
377
|
+
primes = n_primes(350)
|
378
|
+
assert primes[-1] == 2357
|
379
|
+
|
380
|
+
def test_primes(self):
|
381
|
+
primes = primes_from_2_to(50)
|
382
|
+
out = [2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47]
|
383
|
+
assert_allclose(primes, out)
|
384
|
+
|
385
|
+
|
386
|
+
class TestVDC:
|
387
|
+
def test_van_der_corput(self):
|
388
|
+
sample = van_der_corput(10)
|
389
|
+
out = [0.0, 0.5, 0.25, 0.75, 0.125, 0.625,
|
390
|
+
0.375, 0.875, 0.0625, 0.5625]
|
391
|
+
assert_allclose(sample, out)
|
392
|
+
|
393
|
+
sample = van_der_corput(10, workers=4)
|
394
|
+
assert_allclose(sample, out)
|
395
|
+
|
396
|
+
sample = van_der_corput(10, workers=8)
|
397
|
+
assert_allclose(sample, out)
|
398
|
+
|
399
|
+
sample = van_der_corput(7, start_index=3)
|
400
|
+
assert_allclose(sample, out[3:])
|
401
|
+
|
402
|
+
def test_van_der_corput_scramble(self):
|
403
|
+
rng = 338213789010180879520345496831675783177
|
404
|
+
out = van_der_corput(10, scramble=True, rng=rng)
|
405
|
+
|
406
|
+
sample = van_der_corput(7, start_index=3, scramble=True, rng=rng)
|
407
|
+
assert_allclose(sample, out[3:])
|
408
|
+
|
409
|
+
sample = van_der_corput(
|
410
|
+
7, start_index=3, scramble=True, rng=rng, workers=4
|
411
|
+
)
|
412
|
+
assert_allclose(sample, out[3:])
|
413
|
+
|
414
|
+
sample = van_der_corput(
|
415
|
+
7, start_index=3, scramble=True, rng=rng, workers=8
|
416
|
+
)
|
417
|
+
assert_allclose(sample, out[3:])
|
418
|
+
|
419
|
+
def test_invalid_base_error(self):
|
420
|
+
with pytest.raises(ValueError, match=r"'base' must be at least 2"):
|
421
|
+
van_der_corput(10, base=1)
|
422
|
+
|
423
|
+
|
424
|
+
class RandomEngine(qmc.QMCEngine):
|
425
|
+
def __init__(self, d, optimization=None, rng=None):
|
426
|
+
super().__init__(d=d, optimization=optimization, rng=rng)
|
427
|
+
|
428
|
+
def _random(self, n=1, *, workers=1):
|
429
|
+
sample = self.rng.random((n, self.d))
|
430
|
+
return sample
|
431
|
+
|
432
|
+
|
433
|
+
def test_subclassing_QMCEngine():
|
434
|
+
engine = RandomEngine(2, rng=175180605424926556207367152557812293274)
|
435
|
+
|
436
|
+
sample_1 = engine.random(n=5)
|
437
|
+
sample_2 = engine.random(n=7)
|
438
|
+
assert engine.num_generated == 12
|
439
|
+
|
440
|
+
# reset and re-sample
|
441
|
+
engine.reset()
|
442
|
+
assert engine.num_generated == 0
|
443
|
+
|
444
|
+
sample_1_test = engine.random(n=5)
|
445
|
+
assert_equal(sample_1, sample_1_test)
|
446
|
+
|
447
|
+
# repeat reset and fast forward
|
448
|
+
engine.reset()
|
449
|
+
engine.fast_forward(n=5)
|
450
|
+
sample_2_test = engine.random(n=7)
|
451
|
+
|
452
|
+
assert_equal(sample_2, sample_2_test)
|
453
|
+
assert engine.num_generated == 12
|
454
|
+
|
455
|
+
|
456
|
+
def test_raises():
|
457
|
+
# input validation
|
458
|
+
with pytest.raises(ValueError, match=r"d must be a non-negative integer"):
|
459
|
+
RandomEngine((2,))
|
460
|
+
|
461
|
+
with pytest.raises(ValueError, match=r"d must be a non-negative integer"):
|
462
|
+
RandomEngine(-1)
|
463
|
+
|
464
|
+
msg = r"'u_bounds' and 'l_bounds' must be integers"
|
465
|
+
with pytest.raises(ValueError, match=msg):
|
466
|
+
engine = RandomEngine(1)
|
467
|
+
engine.integers(l_bounds=1, u_bounds=1.1)
|
468
|
+
|
469
|
+
|
470
|
+
def test_integers():
|
471
|
+
engine = RandomEngine(1, rng=231195739755290648063853336582377368684)
|
472
|
+
|
473
|
+
# basic tests
|
474
|
+
sample = engine.integers(1, n=10)
|
475
|
+
assert_equal(np.unique(sample), [0])
|
476
|
+
|
477
|
+
assert sample.dtype == np.dtype('int64')
|
478
|
+
|
479
|
+
sample = engine.integers(1, n=10, endpoint=True)
|
480
|
+
assert_equal(np.unique(sample), [0, 1])
|
481
|
+
|
482
|
+
low = -5
|
483
|
+
high = 7
|
484
|
+
|
485
|
+
# scaling logic
|
486
|
+
engine.reset()
|
487
|
+
ref_sample = engine.random(20)
|
488
|
+
ref_sample = ref_sample * (high - low) + low
|
489
|
+
ref_sample = np.floor(ref_sample).astype(np.int64)
|
490
|
+
|
491
|
+
engine.reset()
|
492
|
+
sample = engine.integers(low, u_bounds=high, n=20, endpoint=False)
|
493
|
+
|
494
|
+
assert_equal(sample, ref_sample)
|
495
|
+
|
496
|
+
# up to bounds, no less, no more
|
497
|
+
sample = engine.integers(low, u_bounds=high, n=100, endpoint=False)
|
498
|
+
assert_equal((sample.min(), sample.max()), (low, high-1))
|
499
|
+
|
500
|
+
sample = engine.integers(low, u_bounds=high, n=100, endpoint=True)
|
501
|
+
assert_equal((sample.min(), sample.max()), (low, high))
|
502
|
+
|
503
|
+
|
504
|
+
def test_integers_nd():
|
505
|
+
d = 10
|
506
|
+
rng = np.random.default_rng(3716505122102428560615700415287450951)
|
507
|
+
low = rng.integers(low=-5, high=-1, size=d)
|
508
|
+
high = rng.integers(low=1, high=5, size=d, endpoint=True)
|
509
|
+
engine = RandomEngine(d, rng=rng)
|
510
|
+
|
511
|
+
sample = engine.integers(low, u_bounds=high, n=100, endpoint=False)
|
512
|
+
assert_equal(sample.min(axis=0), low)
|
513
|
+
assert_equal(sample.max(axis=0), high-1)
|
514
|
+
|
515
|
+
sample = engine.integers(low, u_bounds=high, n=100, endpoint=True)
|
516
|
+
assert_equal(sample.min(axis=0), low)
|
517
|
+
assert_equal(sample.max(axis=0), high)
|
518
|
+
|
519
|
+
|
520
|
+
class QMCEngineTests:
|
521
|
+
"""Generic tests for QMC engines."""
|
522
|
+
qmce = NotImplemented
|
523
|
+
can_scramble = NotImplemented
|
524
|
+
unscramble_nd = NotImplemented
|
525
|
+
scramble_nd = NotImplemented
|
526
|
+
|
527
|
+
scramble = [True, False]
|
528
|
+
ids = ["Scrambled", "Unscrambled"]
|
529
|
+
|
530
|
+
def engine(
|
531
|
+
self, scramble: bool,
|
532
|
+
rng=170382760648021597650530316304495310428,
|
533
|
+
**kwargs
|
534
|
+
) -> QMCEngine:
|
535
|
+
# preserve use of `seed` during SPEC 7 transition because
|
536
|
+
# some tests rely on behavior with integer `seed` (which is
|
537
|
+
# different from behavior with integer `rng`)
|
538
|
+
if self.can_scramble:
|
539
|
+
return self.qmce(scramble=scramble, seed=rng, **kwargs)
|
540
|
+
else:
|
541
|
+
if scramble:
|
542
|
+
pytest.skip()
|
543
|
+
else:
|
544
|
+
return self.qmce(seed=rng, **kwargs)
|
545
|
+
|
546
|
+
def reference(self, scramble: bool) -> np.ndarray:
|
547
|
+
return self.scramble_nd if scramble else self.unscramble_nd
|
548
|
+
|
549
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
550
|
+
def test_0dim(self, scramble):
|
551
|
+
engine = self.engine(d=0, scramble=scramble)
|
552
|
+
sample = engine.random(4)
|
553
|
+
assert_array_equal(np.empty((4, 0)), sample)
|
554
|
+
|
555
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
556
|
+
def test_0sample(self, scramble):
|
557
|
+
engine = self.engine(d=2, scramble=scramble)
|
558
|
+
sample = engine.random(0)
|
559
|
+
assert_array_equal(np.empty((0, 2)), sample)
|
560
|
+
|
561
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
562
|
+
def test_1sample(self, scramble):
|
563
|
+
engine = self.engine(d=2, scramble=scramble)
|
564
|
+
sample = engine.random(1)
|
565
|
+
assert (1, 2) == sample.shape
|
566
|
+
|
567
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
568
|
+
def test_bounds(self, scramble):
|
569
|
+
engine = self.engine(d=100, scramble=scramble)
|
570
|
+
sample = engine.random(512)
|
571
|
+
assert np.all(sample >= 0)
|
572
|
+
assert np.all(sample <= 1)
|
573
|
+
|
574
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
575
|
+
def test_sample(self, scramble):
|
576
|
+
ref_sample = self.reference(scramble=scramble)
|
577
|
+
engine = self.engine(d=2, scramble=scramble)
|
578
|
+
sample = engine.random(n=len(ref_sample))
|
579
|
+
|
580
|
+
assert_allclose(sample, ref_sample, atol=1e-1)
|
581
|
+
assert engine.num_generated == len(ref_sample)
|
582
|
+
|
583
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
584
|
+
def test_continuing(self, scramble):
|
585
|
+
engine = self.engine(d=2, scramble=scramble)
|
586
|
+
ref_sample = engine.random(n=8)
|
587
|
+
|
588
|
+
engine = self.engine(d=2, scramble=scramble)
|
589
|
+
|
590
|
+
n_half = len(ref_sample) // 2
|
591
|
+
|
592
|
+
_ = engine.random(n=n_half)
|
593
|
+
sample = engine.random(n=n_half)
|
594
|
+
assert_allclose(sample, ref_sample[n_half:], atol=1e-1)
|
595
|
+
|
596
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
597
|
+
@pytest.mark.parametrize(
|
598
|
+
"rng",
|
599
|
+
(
|
600
|
+
170382760648021597650530316304495310428,
|
601
|
+
np.random.default_rng(170382760648021597650530316304495310428),
|
602
|
+
None,
|
603
|
+
),
|
604
|
+
)
|
605
|
+
@pytest.mark.thread_unsafe
|
606
|
+
def test_reset(self, scramble, rng):
|
607
|
+
engine = self.engine(d=2, scramble=scramble, rng=rng)
|
608
|
+
ref_sample = engine.random(n=8)
|
609
|
+
|
610
|
+
engine.reset()
|
611
|
+
assert engine.num_generated == 0
|
612
|
+
|
613
|
+
sample = engine.random(n=8)
|
614
|
+
assert_allclose(sample, ref_sample)
|
615
|
+
|
616
|
+
@pytest.mark.parametrize("scramble", scramble, ids=ids)
|
617
|
+
def test_fast_forward(self, scramble):
|
618
|
+
engine = self.engine(d=2, scramble=scramble)
|
619
|
+
ref_sample = engine.random(n=8)
|
620
|
+
|
621
|
+
engine = self.engine(d=2, scramble=scramble)
|
622
|
+
|
623
|
+
engine.fast_forward(4)
|
624
|
+
sample = engine.random(n=4)
|
625
|
+
|
626
|
+
assert_allclose(sample, ref_sample[4:], atol=1e-1)
|
627
|
+
|
628
|
+
# alternate fast forwarding with sampling
|
629
|
+
engine.reset()
|
630
|
+
even_draws = []
|
631
|
+
for i in range(8):
|
632
|
+
if i % 2 == 0:
|
633
|
+
even_draws.append(engine.random())
|
634
|
+
else:
|
635
|
+
engine.fast_forward(1)
|
636
|
+
assert_allclose(
|
637
|
+
ref_sample[[i for i in range(8) if i % 2 == 0]],
|
638
|
+
np.concatenate(even_draws),
|
639
|
+
atol=1e-5
|
640
|
+
)
|
641
|
+
|
642
|
+
@pytest.mark.parametrize("scramble", [True])
|
643
|
+
def test_distribution(self, scramble):
|
644
|
+
d = 50
|
645
|
+
engine = self.engine(d=d, scramble=scramble)
|
646
|
+
sample = engine.random(1024)
|
647
|
+
assert_allclose(
|
648
|
+
np.mean(sample, axis=0), np.repeat(0.5, d), atol=1e-2
|
649
|
+
)
|
650
|
+
assert_allclose(
|
651
|
+
np.percentile(sample, 25, axis=0), np.repeat(0.25, d), atol=1e-2
|
652
|
+
)
|
653
|
+
assert_allclose(
|
654
|
+
np.percentile(sample, 75, axis=0), np.repeat(0.75, d), atol=1e-2
|
655
|
+
)
|
656
|
+
|
657
|
+
def test_raises_optimizer(self):
|
658
|
+
message = r"'toto' is not a valid optimization method"
|
659
|
+
with pytest.raises(ValueError, match=message):
|
660
|
+
self.engine(d=1, scramble=False, optimization="toto")
|
661
|
+
|
662
|
+
@pytest.mark.parametrize(
|
663
|
+
"optimization,metric",
|
664
|
+
[
|
665
|
+
("random-CD", qmc.discrepancy),
|
666
|
+
("lloyd", lambda sample: -_l1_norm(sample))]
|
667
|
+
)
|
668
|
+
def test_optimizers(self, optimization, metric):
|
669
|
+
engine = self.engine(d=2, scramble=False)
|
670
|
+
sample_ref = engine.random(n=64)
|
671
|
+
metric_ref = metric(sample_ref)
|
672
|
+
|
673
|
+
optimal_ = self.engine(d=2, scramble=False, optimization=optimization)
|
674
|
+
sample_ = optimal_.random(n=64)
|
675
|
+
metric_ = metric(sample_)
|
676
|
+
|
677
|
+
assert metric_ < metric_ref
|
678
|
+
|
679
|
+
def test_consume_prng_state(self):
|
680
|
+
rng = np.random.default_rng(0xa29cabb11cfdf44ff6cac8bec254c2a0)
|
681
|
+
sample = []
|
682
|
+
for i in range(3):
|
683
|
+
engine = self.engine(d=2, scramble=True, rng=rng)
|
684
|
+
sample.append(engine.random(4))
|
685
|
+
|
686
|
+
with pytest.raises(AssertionError, match="Arrays are not equal"):
|
687
|
+
assert_equal(sample[0], sample[1])
|
688
|
+
with pytest.raises(AssertionError, match="Arrays are not equal"):
|
689
|
+
assert_equal(sample[0], sample[2])
|
690
|
+
|
691
|
+
|
692
|
+
class TestHalton(QMCEngineTests):
|
693
|
+
qmce = qmc.Halton
|
694
|
+
can_scramble = True
|
695
|
+
# theoretical values known from Van der Corput
|
696
|
+
unscramble_nd = np.array([[0, 0], [1 / 2, 1 / 3],
|
697
|
+
[1 / 4, 2 / 3], [3 / 4, 1 / 9],
|
698
|
+
[1 / 8, 4 / 9], [5 / 8, 7 / 9],
|
699
|
+
[3 / 8, 2 / 9], [7 / 8, 5 / 9]])
|
700
|
+
# theoretical values unknown: convergence properties checked
|
701
|
+
scramble_nd = np.array([[0.50246036, 0.93382481],
|
702
|
+
[0.00246036, 0.26715815],
|
703
|
+
[0.75246036, 0.60049148],
|
704
|
+
[0.25246036, 0.8227137 ],
|
705
|
+
[0.62746036, 0.15604704],
|
706
|
+
[0.12746036, 0.48938037],
|
707
|
+
[0.87746036, 0.71160259],
|
708
|
+
[0.37746036, 0.04493592]])
|
709
|
+
|
710
|
+
def test_workers(self):
|
711
|
+
ref_sample = self.reference(scramble=True)
|
712
|
+
engine = self.engine(d=2, scramble=True)
|
713
|
+
sample = engine.random(n=len(ref_sample), workers=8)
|
714
|
+
|
715
|
+
assert_allclose(sample, ref_sample, atol=1e-3)
|
716
|
+
|
717
|
+
# worker + integers
|
718
|
+
engine.reset()
|
719
|
+
ref_sample = engine.integers(10)
|
720
|
+
engine.reset()
|
721
|
+
sample = engine.integers(10, workers=8)
|
722
|
+
assert_equal(sample, ref_sample)
|
723
|
+
|
724
|
+
|
725
|
+
class TestLHS(QMCEngineTests):
|
726
|
+
qmce = qmc.LatinHypercube
|
727
|
+
can_scramble = True
|
728
|
+
|
729
|
+
def test_continuing(self, *args):
|
730
|
+
pytest.skip("Not applicable: not a sequence.")
|
731
|
+
|
732
|
+
def test_fast_forward(self, *args):
|
733
|
+
pytest.skip("Not applicable: not a sequence.")
|
734
|
+
|
735
|
+
def test_sample(self, *args):
|
736
|
+
pytest.skip("Not applicable: the value of reference sample is"
|
737
|
+
" implementation dependent.")
|
738
|
+
|
739
|
+
@pytest.mark.parametrize("strength", [1, 2])
|
740
|
+
@pytest.mark.parametrize("scramble", [False, True])
|
741
|
+
@pytest.mark.parametrize("optimization", [None, "random-CD"])
|
742
|
+
def test_sample_stratified(self, optimization, scramble, strength):
|
743
|
+
rng = np.random.default_rng(37511836202578819870665127532742111260)
|
744
|
+
p = 5
|
745
|
+
n = p**2
|
746
|
+
d = 6
|
747
|
+
|
748
|
+
engine = qmc.LatinHypercube(d=d, scramble=scramble,
|
749
|
+
strength=strength,
|
750
|
+
optimization=optimization,
|
751
|
+
rng=rng)
|
752
|
+
sample = engine.random(n=n)
|
753
|
+
assert sample.shape == (n, d)
|
754
|
+
assert engine.num_generated == n
|
755
|
+
|
756
|
+
# centering stratifies samples in the middle of equal segments:
|
757
|
+
# * inter-sample distance is constant in 1D sub-projections
|
758
|
+
# * after ordering, columns are equal
|
759
|
+
expected1d = (np.arange(n) + 0.5) / n
|
760
|
+
expected = np.broadcast_to(expected1d, (d, n)).T
|
761
|
+
assert np.any(sample != expected)
|
762
|
+
|
763
|
+
sorted_sample = np.sort(sample, axis=0)
|
764
|
+
tol = 0.5 / n if scramble else 0
|
765
|
+
|
766
|
+
assert_allclose(sorted_sample, expected, atol=tol)
|
767
|
+
assert np.any(sample - expected > tol)
|
768
|
+
|
769
|
+
if strength == 2 and optimization is None:
|
770
|
+
unique_elements = np.arange(p)
|
771
|
+
desired = set(product(unique_elements, unique_elements))
|
772
|
+
|
773
|
+
for i, j in combinations(range(engine.d), 2):
|
774
|
+
samples_2d = sample[:, [i, j]]
|
775
|
+
res = (samples_2d * p).astype(int)
|
776
|
+
res_set = {tuple(row) for row in res}
|
777
|
+
assert_equal(res_set, desired)
|
778
|
+
|
779
|
+
def test_optimizer_1d(self):
|
780
|
+
# discrepancy measures are invariant under permuting factors and runs
|
781
|
+
engine = self.engine(d=1, scramble=False)
|
782
|
+
sample_ref = engine.random(n=64)
|
783
|
+
|
784
|
+
optimal_ = self.engine(d=1, scramble=False, optimization="random-CD")
|
785
|
+
sample_ = optimal_.random(n=64)
|
786
|
+
|
787
|
+
assert_array_equal(sample_ref, sample_)
|
788
|
+
|
789
|
+
def test_raises(self):
|
790
|
+
message = r"not a valid strength"
|
791
|
+
with pytest.raises(ValueError, match=message):
|
792
|
+
qmc.LatinHypercube(1, strength=3)
|
793
|
+
|
794
|
+
message = r"n is not the square of a prime number"
|
795
|
+
with pytest.raises(ValueError, match=message):
|
796
|
+
engine = qmc.LatinHypercube(d=2, strength=2)
|
797
|
+
engine.random(16)
|
798
|
+
|
799
|
+
message = r"n is not the square of a prime number"
|
800
|
+
with pytest.raises(ValueError, match=message):
|
801
|
+
engine = qmc.LatinHypercube(d=2, strength=2)
|
802
|
+
engine.random(5) # because int(sqrt(5)) would result in 2
|
803
|
+
|
804
|
+
message = r"n is too small for d"
|
805
|
+
with pytest.raises(ValueError, match=message):
|
806
|
+
engine = qmc.LatinHypercube(d=5, strength=2)
|
807
|
+
engine.random(9)
|
808
|
+
|
809
|
+
|
810
|
+
class TestSobol(QMCEngineTests):
|
811
|
+
qmce = qmc.Sobol
|
812
|
+
can_scramble = True
|
813
|
+
# theoretical values from Joe Kuo2010
|
814
|
+
unscramble_nd = np.array([[0., 0.],
|
815
|
+
[0.5, 0.5],
|
816
|
+
[0.75, 0.25],
|
817
|
+
[0.25, 0.75],
|
818
|
+
[0.375, 0.375],
|
819
|
+
[0.875, 0.875],
|
820
|
+
[0.625, 0.125],
|
821
|
+
[0.125, 0.625]])
|
822
|
+
|
823
|
+
# theoretical values unknown: convergence properties checked
|
824
|
+
scramble_nd = np.array([[0.25331921, 0.41371179],
|
825
|
+
[0.8654213, 0.9821167],
|
826
|
+
[0.70097554, 0.03664616],
|
827
|
+
[0.18027647, 0.60895735],
|
828
|
+
[0.10521339, 0.21897069],
|
829
|
+
[0.53019685, 0.66619033],
|
830
|
+
[0.91122276, 0.34580743],
|
831
|
+
[0.45337471, 0.78912079]])
|
832
|
+
|
833
|
+
def test_warning(self):
|
834
|
+
with pytest.warns(UserWarning, match=r"The balance properties of "
|
835
|
+
r"Sobol' points"):
|
836
|
+
engine = qmc.Sobol(1)
|
837
|
+
engine.random(10)
|
838
|
+
|
839
|
+
def test_random_base2(self):
|
840
|
+
engine = qmc.Sobol(2, scramble=False)
|
841
|
+
sample = engine.random_base2(2)
|
842
|
+
assert_array_equal(self.unscramble_nd[:4], sample)
|
843
|
+
|
844
|
+
# resampling still having N=2**n
|
845
|
+
sample = engine.random_base2(2)
|
846
|
+
assert_array_equal(self.unscramble_nd[4:8], sample)
|
847
|
+
|
848
|
+
# resampling again but leading to N!=2**n
|
849
|
+
with pytest.raises(ValueError, match=r"The balance properties of "
|
850
|
+
r"Sobol' points"):
|
851
|
+
engine.random_base2(2)
|
852
|
+
|
853
|
+
def test_raise(self):
|
854
|
+
with pytest.raises(ValueError, match=r"Maximum supported "
|
855
|
+
r"dimensionality"):
|
856
|
+
qmc.Sobol(qmc.Sobol.MAXDIM + 1)
|
857
|
+
|
858
|
+
with pytest.raises(ValueError, match=r"Maximum supported "
|
859
|
+
r"'bits' is 64"):
|
860
|
+
qmc.Sobol(1, bits=65)
|
861
|
+
|
862
|
+
def test_high_dim(self):
|
863
|
+
engine = qmc.Sobol(1111, scramble=False)
|
864
|
+
count1 = Counter(engine.random().flatten().tolist())
|
865
|
+
count2 = Counter(engine.random().flatten().tolist())
|
866
|
+
assert_equal(count1, Counter({0.0: 1111}))
|
867
|
+
assert_equal(count2, Counter({0.5: 1111}))
|
868
|
+
|
869
|
+
@pytest.mark.parametrize("bits", [2, 3])
|
870
|
+
def test_bits(self, bits):
|
871
|
+
engine = qmc.Sobol(2, scramble=False, bits=bits)
|
872
|
+
ns = 2**bits
|
873
|
+
sample = engine.random(ns)
|
874
|
+
assert_array_equal(self.unscramble_nd[:ns], sample)
|
875
|
+
|
876
|
+
with pytest.raises(ValueError, match="increasing `bits`"):
|
877
|
+
engine.random()
|
878
|
+
|
879
|
+
def test_64bits(self):
|
880
|
+
engine = qmc.Sobol(2, scramble=False, bits=64)
|
881
|
+
sample = engine.random(8)
|
882
|
+
assert_array_equal(self.unscramble_nd, sample)
|
883
|
+
|
884
|
+
|
885
|
+
class TestPoisson(QMCEngineTests):
|
886
|
+
qmce = qmc.PoissonDisk
|
887
|
+
can_scramble = False
|
888
|
+
|
889
|
+
def test_bounds(self, *args):
|
890
|
+
pytest.skip("Too costly in memory.")
|
891
|
+
|
892
|
+
def test_fast_forward(self, *args):
|
893
|
+
pytest.skip("Not applicable: recursive process.")
|
894
|
+
|
895
|
+
def test_sample(self, *args):
|
896
|
+
pytest.skip("Not applicable: the value of reference sample is"
|
897
|
+
" implementation dependent.")
|
898
|
+
|
899
|
+
def test_continuing(self, *args):
|
900
|
+
# can continue a sampling, but will not preserve the same order
|
901
|
+
# because candidates are lost, so we will not select the same center
|
902
|
+
radius = 0.05
|
903
|
+
ns = 6
|
904
|
+
engine = self.engine(d=2, radius=radius, scramble=False)
|
905
|
+
|
906
|
+
sample_init = engine.random(n=ns)
|
907
|
+
assert len(sample_init) <= ns
|
908
|
+
assert l2_norm(sample_init) >= radius
|
909
|
+
|
910
|
+
sample_continued = engine.random(n=ns)
|
911
|
+
assert len(sample_continued) <= ns
|
912
|
+
assert l2_norm(sample_continued) >= radius
|
913
|
+
|
914
|
+
sample = np.concatenate([sample_init, sample_continued], axis=0)
|
915
|
+
assert len(sample) <= ns * 2
|
916
|
+
assert l2_norm(sample) >= radius
|
917
|
+
|
918
|
+
def test_mindist(self):
|
919
|
+
rng = np.random.default_rng(132074951149370773672162394161442690287)
|
920
|
+
ns = 50
|
921
|
+
|
922
|
+
low, high = 0.08, 0.2
|
923
|
+
radii = (high - low) * rng.random(5) + low
|
924
|
+
|
925
|
+
dimensions = [1, 3, 4]
|
926
|
+
hypersphere_methods = ["volume", "surface"]
|
927
|
+
|
928
|
+
gen = product(dimensions, radii, hypersphere_methods)
|
929
|
+
|
930
|
+
for d, radius, hypersphere in gen:
|
931
|
+
engine = self.qmce(
|
932
|
+
d=d, radius=radius, hypersphere=hypersphere, rng=rng
|
933
|
+
)
|
934
|
+
sample = engine.random(ns)
|
935
|
+
|
936
|
+
assert len(sample) <= ns
|
937
|
+
assert l2_norm(sample) >= radius
|
938
|
+
|
939
|
+
def test_fill_space(self):
|
940
|
+
radius = 0.2
|
941
|
+
engine = self.qmce(d=2, radius=radius)
|
942
|
+
|
943
|
+
sample = engine.fill_space()
|
944
|
+
# circle packing problem is np complex
|
945
|
+
assert l2_norm(sample) >= radius
|
946
|
+
|
947
|
+
@pytest.mark.parametrize("l_bounds", [[-1, -2, -1], [1, 2, 1]])
|
948
|
+
def test_sample_inside_lower_bounds(self, l_bounds):
|
949
|
+
radius = 0.2
|
950
|
+
u_bounds=[3, 3, 2]
|
951
|
+
engine = self.qmce(
|
952
|
+
d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds
|
953
|
+
)
|
954
|
+
sample = engine.random(30)
|
955
|
+
|
956
|
+
for point in sample:
|
957
|
+
assert_array_less(point, u_bounds)
|
958
|
+
assert_array_less(l_bounds, point)
|
959
|
+
|
960
|
+
@pytest.mark.parametrize("u_bounds", [[-1, -2, -1], [1, 2, 1]])
|
961
|
+
def test_sample_inside_upper_bounds(self, u_bounds):
|
962
|
+
radius = 0.2
|
963
|
+
l_bounds=[-3, -3, -2]
|
964
|
+
engine = self.qmce(
|
965
|
+
d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds
|
966
|
+
)
|
967
|
+
sample = engine.random(30)
|
968
|
+
|
969
|
+
for point in sample:
|
970
|
+
assert_array_less(point, u_bounds)
|
971
|
+
assert_array_less(l_bounds, point)
|
972
|
+
|
973
|
+
def test_inconsistent_bound_value(self):
|
974
|
+
radius = 0.2
|
975
|
+
l_bounds=[3, 2, 1]
|
976
|
+
u_bounds=[-1, -2, -1]
|
977
|
+
with pytest.raises(
|
978
|
+
ValueError,
|
979
|
+
match="Bounds are not consistent 'l_bounds' < 'u_bounds'"):
|
980
|
+
self.qmce(d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds)
|
981
|
+
|
982
|
+
@pytest.mark.parametrize("u_bounds", [[-1, -2, -1], [-1, -2]])
|
983
|
+
@pytest.mark.parametrize("l_bounds", [[3, 2]])
|
984
|
+
def test_inconsistent_bounds(self, u_bounds, l_bounds):
|
985
|
+
radius = 0.2
|
986
|
+
with pytest.raises(
|
987
|
+
ValueError,
|
988
|
+
match="'l_bounds' and 'u_bounds' must be broadcastable and respect"
|
989
|
+
" the sample dimension"):
|
990
|
+
self.qmce(
|
991
|
+
d=3, radius=radius,
|
992
|
+
l_bounds=l_bounds, u_bounds=u_bounds
|
993
|
+
)
|
994
|
+
|
995
|
+
def test_raises(self):
|
996
|
+
message = r"'toto' is not a valid hypersphere sampling"
|
997
|
+
with pytest.raises(ValueError, match=message):
|
998
|
+
qmc.PoissonDisk(1, hypersphere="toto")
|
999
|
+
|
1000
|
+
|
1001
|
+
class TestMultinomialQMC:
|
1002
|
+
def test_validations(self):
|
1003
|
+
# negative Ps
|
1004
|
+
p = np.array([0.12, 0.26, -0.05, 0.35, 0.22])
|
1005
|
+
with pytest.raises(ValueError, match=r"Elements of pvals must "
|
1006
|
+
r"be non-negative."):
|
1007
|
+
qmc.MultinomialQMC(p, n_trials=10)
|
1008
|
+
|
1009
|
+
# sum of P too large
|
1010
|
+
p = np.array([0.12, 0.26, 0.1, 0.35, 0.22])
|
1011
|
+
message = r"Elements of pvals must sum to 1."
|
1012
|
+
with pytest.raises(ValueError, match=message):
|
1013
|
+
qmc.MultinomialQMC(p, n_trials=10)
|
1014
|
+
|
1015
|
+
p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
|
1016
|
+
|
1017
|
+
message = r"Dimension of `engine` must be 1."
|
1018
|
+
with pytest.raises(ValueError, match=message):
|
1019
|
+
qmc.MultinomialQMC(p, n_trials=10, engine=qmc.Sobol(d=2))
|
1020
|
+
|
1021
|
+
message = r"`engine` must be an instance of..."
|
1022
|
+
with pytest.raises(ValueError, match=message):
|
1023
|
+
qmc.MultinomialQMC(p, n_trials=10, engine=np.random.default_rng())
|
1024
|
+
|
1025
|
+
@pytest.mark.filterwarnings('ignore::UserWarning')
|
1026
|
+
def test_MultinomialBasicDraw(self):
|
1027
|
+
rng = np.random.default_rng(6955663962957011631562466584467607969)
|
1028
|
+
p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
|
1029
|
+
n_trials = 100
|
1030
|
+
expected = np.atleast_2d(n_trials * p).astype(int)
|
1031
|
+
# preserve use of legacy keyword during SPEC 7 transition
|
1032
|
+
engine = qmc.MultinomialQMC(p, n_trials=n_trials, seed=rng)
|
1033
|
+
assert_allclose(engine.random(1), expected, atol=1)
|
1034
|
+
|
1035
|
+
def test_MultinomialDistribution(self):
|
1036
|
+
rng = np.random.default_rng(77797854505813727292048130876699859000)
|
1037
|
+
p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
|
1038
|
+
engine = qmc.MultinomialQMC(p, n_trials=8192, rng=rng)
|
1039
|
+
draws = engine.random(1)
|
1040
|
+
assert_allclose(draws / np.sum(draws), np.atleast_2d(p), atol=1e-4)
|
1041
|
+
|
1042
|
+
def test_FindIndex(self):
|
1043
|
+
p_cumulative = np.array([0.1, 0.4, 0.45, 0.6, 0.75, 0.9, 0.99, 1.0])
|
1044
|
+
size = len(p_cumulative)
|
1045
|
+
assert_equal(_test_find_index(p_cumulative, size, 0.0), 0)
|
1046
|
+
assert_equal(_test_find_index(p_cumulative, size, 0.4), 2)
|
1047
|
+
assert_equal(_test_find_index(p_cumulative, size, 0.44999), 2)
|
1048
|
+
assert_equal(_test_find_index(p_cumulative, size, 0.45001), 3)
|
1049
|
+
assert_equal(_test_find_index(p_cumulative, size, 1.0), size - 1)
|
1050
|
+
|
1051
|
+
@pytest.mark.filterwarnings('ignore::UserWarning')
|
1052
|
+
def test_other_engine(self):
|
1053
|
+
# same as test_MultinomialBasicDraw with different engine
|
1054
|
+
rng = np.random.default_rng(283753519042773243071753037669078065412)
|
1055
|
+
p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
|
1056
|
+
n_trials = 100
|
1057
|
+
expected = np.atleast_2d(n_trials * p).astype(int)
|
1058
|
+
base_engine = qmc.Sobol(1, scramble=True, rng=rng)
|
1059
|
+
engine = qmc.MultinomialQMC(p, n_trials=n_trials, engine=base_engine,
|
1060
|
+
rng=rng)
|
1061
|
+
assert_allclose(engine.random(1), expected, atol=1)
|
1062
|
+
|
1063
|
+
|
1064
|
+
class TestNormalQMC:
|
1065
|
+
def test_NormalQMC(self):
|
1066
|
+
# d = 1
|
1067
|
+
engine = qmc.MultivariateNormalQMC(mean=np.zeros(1))
|
1068
|
+
samples = engine.random()
|
1069
|
+
assert_equal(samples.shape, (1, 1))
|
1070
|
+
samples = engine.random(n=5)
|
1071
|
+
assert_equal(samples.shape, (5, 1))
|
1072
|
+
# d = 2
|
1073
|
+
engine = qmc.MultivariateNormalQMC(mean=np.zeros(2))
|
1074
|
+
samples = engine.random()
|
1075
|
+
assert_equal(samples.shape, (1, 2))
|
1076
|
+
samples = engine.random(n=5)
|
1077
|
+
assert_equal(samples.shape, (5, 2))
|
1078
|
+
|
1079
|
+
def test_NormalQMCInvTransform(self):
|
1080
|
+
# d = 1
|
1081
|
+
engine = qmc.MultivariateNormalQMC(
|
1082
|
+
mean=np.zeros(1), inv_transform=True)
|
1083
|
+
samples = engine.random()
|
1084
|
+
assert_equal(samples.shape, (1, 1))
|
1085
|
+
samples = engine.random(n=5)
|
1086
|
+
assert_equal(samples.shape, (5, 1))
|
1087
|
+
# d = 2
|
1088
|
+
engine = qmc.MultivariateNormalQMC(
|
1089
|
+
mean=np.zeros(2), inv_transform=True)
|
1090
|
+
samples = engine.random()
|
1091
|
+
assert_equal(samples.shape, (1, 2))
|
1092
|
+
samples = engine.random(n=5)
|
1093
|
+
assert_equal(samples.shape, (5, 2))
|
1094
|
+
|
1095
|
+
def test_NormalQMCSeeded(self):
|
1096
|
+
# test even dimension
|
1097
|
+
rng = np.random.default_rng(274600237797326520096085022671371676017)
|
1098
|
+
# preserve use of legacy keyword during SPEC 7 transition
|
1099
|
+
engine = qmc.MultivariateNormalQMC(
|
1100
|
+
mean=np.zeros(2), inv_transform=False, seed=rng)
|
1101
|
+
samples = engine.random(n=2)
|
1102
|
+
samples_expected = np.array([[-0.932001, -0.522923],
|
1103
|
+
[-1.477655, 0.846851]])
|
1104
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1105
|
+
|
1106
|
+
# test odd dimension
|
1107
|
+
rng = np.random.default_rng(274600237797326520096085022671371676017)
|
1108
|
+
engine = qmc.MultivariateNormalQMC(
|
1109
|
+
mean=np.zeros(3), inv_transform=False, rng=rng)
|
1110
|
+
samples = engine.random(n=2)
|
1111
|
+
samples_expected = np.array([[-0.932001, -0.522923, 0.036578],
|
1112
|
+
[-1.778011, 0.912428, -0.065421]])
|
1113
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1114
|
+
|
1115
|
+
# same test with another engine
|
1116
|
+
rng = np.random.default_rng(274600237797326520096085022671371676017)
|
1117
|
+
base_engine = qmc.Sobol(4, scramble=True, rng=rng)
|
1118
|
+
engine = qmc.MultivariateNormalQMC(
|
1119
|
+
mean=np.zeros(3), inv_transform=False,
|
1120
|
+
engine=base_engine, rng=rng
|
1121
|
+
)
|
1122
|
+
samples = engine.random(n=2)
|
1123
|
+
samples_expected = np.array([[-0.932001, -0.522923, 0.036578],
|
1124
|
+
[-1.778011, 0.912428, -0.065421]])
|
1125
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1126
|
+
|
1127
|
+
def test_NormalQMCSeededInvTransform(self):
|
1128
|
+
# test even dimension
|
1129
|
+
rng = np.random.default_rng(288527772707286126646493545351112463929)
|
1130
|
+
engine = qmc.MultivariateNormalQMC(
|
1131
|
+
mean=np.zeros(2), rng=rng, inv_transform=True)
|
1132
|
+
samples = engine.random(n=2)
|
1133
|
+
samples_expected = np.array([[-0.913237, -0.964026],
|
1134
|
+
[0.255904, 0.003068]])
|
1135
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1136
|
+
|
1137
|
+
# test odd dimension
|
1138
|
+
rng = np.random.default_rng(288527772707286126646493545351112463929)
|
1139
|
+
engine = qmc.MultivariateNormalQMC(
|
1140
|
+
mean=np.zeros(3), rng=rng, inv_transform=True)
|
1141
|
+
samples = engine.random(n=2)
|
1142
|
+
samples_expected = np.array([[-0.913237, -0.964026, 0.355501],
|
1143
|
+
[0.699261, 2.90213 , -0.6418]])
|
1144
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1145
|
+
|
1146
|
+
def test_other_engine(self):
|
1147
|
+
for d in (0, 1, 2):
|
1148
|
+
base_engine = qmc.Sobol(d=d, scramble=False)
|
1149
|
+
engine = qmc.MultivariateNormalQMC(mean=np.zeros(d),
|
1150
|
+
engine=base_engine,
|
1151
|
+
inv_transform=True)
|
1152
|
+
samples = engine.random()
|
1153
|
+
assert_equal(samples.shape, (1, d))
|
1154
|
+
|
1155
|
+
def test_NormalQMCShapiro(self):
|
1156
|
+
rng = np.random.default_rng(13242)
|
1157
|
+
engine = qmc.MultivariateNormalQMC(mean=np.zeros(2), rng=rng)
|
1158
|
+
samples = engine.random(n=256)
|
1159
|
+
assert all(np.abs(samples.mean(axis=0)) < 1e-2)
|
1160
|
+
assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
|
1161
|
+
# perform Shapiro-Wilk test for normality
|
1162
|
+
for i in (0, 1):
|
1163
|
+
_, pval = shapiro(samples[:, i])
|
1164
|
+
assert pval > 0.9
|
1165
|
+
# make sure samples are uncorrelated
|
1166
|
+
cov = np.cov(samples.transpose())
|
1167
|
+
assert np.abs(cov[0, 1]) < 1e-2
|
1168
|
+
|
1169
|
+
def test_NormalQMCShapiroInvTransform(self):
|
1170
|
+
rng = np.random.default_rng(32344554)
|
1171
|
+
engine = qmc.MultivariateNormalQMC(
|
1172
|
+
mean=np.zeros(2), inv_transform=True, rng=rng)
|
1173
|
+
samples = engine.random(n=256)
|
1174
|
+
assert all(np.abs(samples.mean(axis=0)) < 1e-2)
|
1175
|
+
assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
|
1176
|
+
# perform Shapiro-Wilk test for normality
|
1177
|
+
for i in (0, 1):
|
1178
|
+
_, pval = shapiro(samples[:, i])
|
1179
|
+
assert pval > 0.9
|
1180
|
+
# make sure samples are uncorrelated
|
1181
|
+
cov = np.cov(samples.transpose())
|
1182
|
+
assert np.abs(cov[0, 1]) < 1e-2
|
1183
|
+
|
1184
|
+
|
1185
|
+
class TestMultivariateNormalQMC:
|
1186
|
+
|
1187
|
+
def test_validations(self):
|
1188
|
+
|
1189
|
+
message = r"Dimension of `engine` must be consistent"
|
1190
|
+
with pytest.raises(ValueError, match=message):
|
1191
|
+
qmc.MultivariateNormalQMC([0], engine=qmc.Sobol(d=2))
|
1192
|
+
|
1193
|
+
message = r"Dimension of `engine` must be consistent"
|
1194
|
+
with pytest.raises(ValueError, match=message):
|
1195
|
+
qmc.MultivariateNormalQMC([0, 0, 0], engine=qmc.Sobol(d=4))
|
1196
|
+
|
1197
|
+
message = r"`engine` must be an instance of..."
|
1198
|
+
with pytest.raises(ValueError, match=message):
|
1199
|
+
qmc.MultivariateNormalQMC([0, 0], engine=np.random.default_rng())
|
1200
|
+
|
1201
|
+
message = r"Covariance matrix not PSD."
|
1202
|
+
with pytest.raises(ValueError, match=message):
|
1203
|
+
qmc.MultivariateNormalQMC([0, 0], [[1, 2], [2, 1]])
|
1204
|
+
|
1205
|
+
message = r"Covariance matrix is not symmetric."
|
1206
|
+
with pytest.raises(ValueError, match=message):
|
1207
|
+
qmc.MultivariateNormalQMC([0, 0], [[1, 0], [2, 1]])
|
1208
|
+
|
1209
|
+
message = r"Dimension mismatch between mean and covariance."
|
1210
|
+
with pytest.raises(ValueError, match=message):
|
1211
|
+
qmc.MultivariateNormalQMC([0], [[1, 0], [0, 1]])
|
1212
|
+
|
1213
|
+
def test_MultivariateNormalQMCNonPD(self):
|
1214
|
+
# try with non-pd but psd cov; should work
|
1215
|
+
engine = qmc.MultivariateNormalQMC(
|
1216
|
+
[0, 0, 0], [[1, 0, 1], [0, 1, 1], [1, 1, 2]],
|
1217
|
+
)
|
1218
|
+
assert engine._corr_matrix is not None
|
1219
|
+
|
1220
|
+
def test_MultivariateNormalQMC(self):
|
1221
|
+
# d = 1 scalar
|
1222
|
+
engine = qmc.MultivariateNormalQMC(mean=0, cov=5)
|
1223
|
+
samples = engine.random()
|
1224
|
+
assert_equal(samples.shape, (1, 1))
|
1225
|
+
samples = engine.random(n=5)
|
1226
|
+
assert_equal(samples.shape, (5, 1))
|
1227
|
+
|
1228
|
+
# d = 2 list
|
1229
|
+
engine = qmc.MultivariateNormalQMC(mean=[0, 1], cov=[[1, 0], [0, 1]])
|
1230
|
+
samples = engine.random()
|
1231
|
+
assert_equal(samples.shape, (1, 2))
|
1232
|
+
samples = engine.random(n=5)
|
1233
|
+
assert_equal(samples.shape, (5, 2))
|
1234
|
+
|
1235
|
+
# d = 3 np.array
|
1236
|
+
mean = np.array([0, 1, 2])
|
1237
|
+
cov = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
|
1238
|
+
engine = qmc.MultivariateNormalQMC(mean, cov)
|
1239
|
+
samples = engine.random()
|
1240
|
+
assert_equal(samples.shape, (1, 3))
|
1241
|
+
samples = engine.random(n=5)
|
1242
|
+
assert_equal(samples.shape, (5, 3))
|
1243
|
+
|
1244
|
+
def test_MultivariateNormalQMCInvTransform(self):
|
1245
|
+
# d = 1 scalar
|
1246
|
+
engine = qmc.MultivariateNormalQMC(mean=0, cov=5, inv_transform=True)
|
1247
|
+
samples = engine.random()
|
1248
|
+
assert_equal(samples.shape, (1, 1))
|
1249
|
+
samples = engine.random(n=5)
|
1250
|
+
assert_equal(samples.shape, (5, 1))
|
1251
|
+
|
1252
|
+
# d = 2 list
|
1253
|
+
engine = qmc.MultivariateNormalQMC(
|
1254
|
+
mean=[0, 1], cov=[[1, 0], [0, 1]], inv_transform=True,
|
1255
|
+
)
|
1256
|
+
samples = engine.random()
|
1257
|
+
assert_equal(samples.shape, (1, 2))
|
1258
|
+
samples = engine.random(n=5)
|
1259
|
+
assert_equal(samples.shape, (5, 2))
|
1260
|
+
|
1261
|
+
# d = 3 np.array
|
1262
|
+
mean = np.array([0, 1, 2])
|
1263
|
+
cov = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
|
1264
|
+
engine = qmc.MultivariateNormalQMC(mean, cov, inv_transform=True)
|
1265
|
+
samples = engine.random()
|
1266
|
+
assert_equal(samples.shape, (1, 3))
|
1267
|
+
samples = engine.random(n=5)
|
1268
|
+
assert_equal(samples.shape, (5, 3))
|
1269
|
+
|
1270
|
+
def test_MultivariateNormalQMCSeeded(self):
|
1271
|
+
# test even dimension
|
1272
|
+
rng = np.random.default_rng(180182791534511062935571481899241825000)
|
1273
|
+
a = rng.standard_normal((2, 2))
|
1274
|
+
A = a @ a.transpose() + np.diag(rng.random(2))
|
1275
|
+
engine = qmc.MultivariateNormalQMC(np.array([0, 0]), A,
|
1276
|
+
inv_transform=False, rng=rng)
|
1277
|
+
samples = engine.random(n=2)
|
1278
|
+
samples_expected = np.array([[-0.64419, -0.882413],
|
1279
|
+
[0.837199, 2.045301]])
|
1280
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1281
|
+
|
1282
|
+
# test odd dimension
|
1283
|
+
rng = np.random.default_rng(180182791534511062935571481899241825000)
|
1284
|
+
a = rng.standard_normal((3, 3))
|
1285
|
+
A = a @ a.transpose() + np.diag(rng.random(3))
|
1286
|
+
engine = qmc.MultivariateNormalQMC(np.array([0, 0, 0]), A,
|
1287
|
+
inv_transform=False, rng=rng)
|
1288
|
+
samples = engine.random(n=2)
|
1289
|
+
samples_expected = np.array([[-0.693853, -1.265338, -0.088024],
|
1290
|
+
[1.620193, 2.679222, 0.457343]])
|
1291
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1292
|
+
|
1293
|
+
def test_MultivariateNormalQMCSeededInvTransform(self):
|
1294
|
+
# test even dimension
|
1295
|
+
rng = np.random.default_rng(224125808928297329711992996940871155974)
|
1296
|
+
a = rng.standard_normal((2, 2))
|
1297
|
+
A = a @ a.transpose() + np.diag(rng.random(2))
|
1298
|
+
engine = qmc.MultivariateNormalQMC(
|
1299
|
+
np.array([0, 0]), A, rng=rng, inv_transform=True
|
1300
|
+
)
|
1301
|
+
samples = engine.random(n=2)
|
1302
|
+
samples_expected = np.array([[0.682171, -3.114233],
|
1303
|
+
[-0.098463, 0.668069]])
|
1304
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1305
|
+
|
1306
|
+
# test odd dimension
|
1307
|
+
rng = np.random.default_rng(224125808928297329711992996940871155974)
|
1308
|
+
a = rng.standard_normal((3, 3))
|
1309
|
+
A = a @ a.transpose() + np.diag(rng.random(3))
|
1310
|
+
engine = qmc.MultivariateNormalQMC(
|
1311
|
+
np.array([0, 0, 0]), A, rng=rng, inv_transform=True
|
1312
|
+
)
|
1313
|
+
samples = engine.random(n=2)
|
1314
|
+
samples_expected = np.array([[0.988061, -1.644089, -0.877035],
|
1315
|
+
[-1.771731, 1.096988, 2.024744]])
|
1316
|
+
assert_allclose(samples, samples_expected, atol=1e-4)
|
1317
|
+
|
1318
|
+
def test_MultivariateNormalQMCShapiro(self):
|
1319
|
+
# test the standard case
|
1320
|
+
rng = np.random.default_rng(188960007281846377164494575845971640)
|
1321
|
+
engine = qmc.MultivariateNormalQMC(
|
1322
|
+
mean=[0, 0], cov=[[1, 0], [0, 1]], rng=rng
|
1323
|
+
)
|
1324
|
+
samples = engine.random(n=256)
|
1325
|
+
assert all(np.abs(samples.mean(axis=0)) < 1e-2)
|
1326
|
+
assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
|
1327
|
+
# perform Shapiro-Wilk test for normality
|
1328
|
+
for i in (0, 1):
|
1329
|
+
_, pval = shapiro(samples[:, i])
|
1330
|
+
assert pval > 0.9
|
1331
|
+
# make sure samples are uncorrelated
|
1332
|
+
cov = np.cov(samples.transpose())
|
1333
|
+
assert np.abs(cov[0, 1]) < 1e-2
|
1334
|
+
|
1335
|
+
# test the correlated, non-zero mean case
|
1336
|
+
engine = qmc.MultivariateNormalQMC(
|
1337
|
+
mean=[1.0, 2.0], cov=[[1.5, 0.5], [0.5, 1.5]], rng=rng
|
1338
|
+
)
|
1339
|
+
samples = engine.random(n=256)
|
1340
|
+
assert all(np.abs(samples.mean(axis=0) - [1, 2]) < 1e-2)
|
1341
|
+
assert all(np.abs(samples.std(axis=0) - np.sqrt(1.5)) < 1e-2)
|
1342
|
+
# perform Shapiro-Wilk test for normality
|
1343
|
+
for i in (0, 1):
|
1344
|
+
_, pval = shapiro(samples[:, i])
|
1345
|
+
assert pval > 0.9
|
1346
|
+
# check covariance
|
1347
|
+
cov = np.cov(samples.transpose())
|
1348
|
+
assert np.abs(cov[0, 1] - 0.5) < 1e-2
|
1349
|
+
|
1350
|
+
def test_MultivariateNormalQMCShapiroInvTransform(self):
|
1351
|
+
# test the standard case
|
1352
|
+
rng = np.random.default_rng(200089821034563288698994840831440331329)
|
1353
|
+
engine = qmc.MultivariateNormalQMC(
|
1354
|
+
mean=[0, 0], cov=[[1, 0], [0, 1]], rng=rng, inv_transform=True
|
1355
|
+
)
|
1356
|
+
samples = engine.random(n=256)
|
1357
|
+
assert all(np.abs(samples.mean(axis=0)) < 1e-2)
|
1358
|
+
assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
|
1359
|
+
# perform Shapiro-Wilk test for normality
|
1360
|
+
for i in (0, 1):
|
1361
|
+
_, pval = shapiro(samples[:, i])
|
1362
|
+
assert pval > 0.9
|
1363
|
+
# make sure samples are uncorrelated
|
1364
|
+
cov = np.cov(samples.transpose())
|
1365
|
+
assert np.abs(cov[0, 1]) < 1e-2
|
1366
|
+
|
1367
|
+
# test the correlated, non-zero mean case
|
1368
|
+
engine = qmc.MultivariateNormalQMC(
|
1369
|
+
mean=[1.0, 2.0],
|
1370
|
+
cov=[[1.5, 0.5], [0.5, 1.5]],
|
1371
|
+
rng=rng,
|
1372
|
+
inv_transform=True,
|
1373
|
+
)
|
1374
|
+
samples = engine.random(n=256)
|
1375
|
+
assert all(np.abs(samples.mean(axis=0) - [1, 2]) < 1e-2)
|
1376
|
+
assert all(np.abs(samples.std(axis=0) - np.sqrt(1.5)) < 1e-2)
|
1377
|
+
# perform Shapiro-Wilk test for normality
|
1378
|
+
for i in (0, 1):
|
1379
|
+
_, pval = shapiro(samples[:, i])
|
1380
|
+
assert pval > 0.9
|
1381
|
+
# check covariance
|
1382
|
+
cov = np.cov(samples.transpose())
|
1383
|
+
assert np.abs(cov[0, 1] - 0.5) < 1e-2
|
1384
|
+
|
1385
|
+
def test_MultivariateNormalQMCDegenerate(self):
|
1386
|
+
# X, Y iid standard Normal and Z = X + Y, random vector (X, Y, Z)
|
1387
|
+
rng = np.random.default_rng(16320637417581448357869821654290448620)
|
1388
|
+
engine = qmc.MultivariateNormalQMC(
|
1389
|
+
mean=[0.0, 0.0, 0.0],
|
1390
|
+
cov=[[1.0, 0.0, 1.0], [0.0, 1.0, 1.0], [1.0, 1.0, 2.0]],
|
1391
|
+
rng=rng,
|
1392
|
+
)
|
1393
|
+
samples = engine.random(n=512)
|
1394
|
+
assert all(np.abs(samples.mean(axis=0)) < 1e-2)
|
1395
|
+
assert np.abs(np.std(samples[:, 0]) - 1) < 1e-2
|
1396
|
+
assert np.abs(np.std(samples[:, 1]) - 1) < 1e-2
|
1397
|
+
assert np.abs(np.std(samples[:, 2]) - np.sqrt(2)) < 1e-2
|
1398
|
+
for i in (0, 1, 2):
|
1399
|
+
_, pval = shapiro(samples[:, i])
|
1400
|
+
assert pval > 0.8
|
1401
|
+
cov = np.cov(samples.transpose())
|
1402
|
+
assert np.abs(cov[0, 1]) < 1e-2
|
1403
|
+
assert np.abs(cov[0, 2] - 1) < 1e-2
|
1404
|
+
# check to see if X + Y = Z almost exactly
|
1405
|
+
assert all(np.abs(samples[:, 0] + samples[:, 1] - samples[:, 2])
|
1406
|
+
< 1e-5)
|
1407
|
+
|
1408
|
+
|
1409
|
+
class TestLloyd:
|
1410
|
+
def test_lloyd(self):
|
1411
|
+
# quite sensible seed as it can go up before going further down
|
1412
|
+
rng = np.random.RandomState(1809831)
|
1413
|
+
sample = rng.uniform(0, 1, size=(128, 2))
|
1414
|
+
base_l1 = _l1_norm(sample)
|
1415
|
+
base_l2 = l2_norm(sample)
|
1416
|
+
|
1417
|
+
for _ in range(4):
|
1418
|
+
sample_lloyd = _lloyd_centroidal_voronoi_tessellation(
|
1419
|
+
sample, maxiter=1,
|
1420
|
+
)
|
1421
|
+
curr_l1 = _l1_norm(sample_lloyd)
|
1422
|
+
curr_l2 = l2_norm(sample_lloyd)
|
1423
|
+
|
1424
|
+
# higher is better for the distance measures
|
1425
|
+
assert base_l1 < curr_l1
|
1426
|
+
assert base_l2 < curr_l2
|
1427
|
+
|
1428
|
+
base_l1 = curr_l1
|
1429
|
+
base_l2 = curr_l2
|
1430
|
+
|
1431
|
+
sample = sample_lloyd
|
1432
|
+
|
1433
|
+
def test_lloyd_non_mutating(self):
|
1434
|
+
"""
|
1435
|
+
Verify that the input samples are not mutated in place and that they do
|
1436
|
+
not share memory with the output.
|
1437
|
+
"""
|
1438
|
+
sample_orig = np.array([[0.1, 0.1],
|
1439
|
+
[0.1, 0.2],
|
1440
|
+
[0.2, 0.1],
|
1441
|
+
[0.2, 0.2]])
|
1442
|
+
sample_copy = sample_orig.copy()
|
1443
|
+
new_sample = _lloyd_centroidal_voronoi_tessellation(
|
1444
|
+
sample=sample_orig
|
1445
|
+
)
|
1446
|
+
assert_allclose(sample_orig, sample_copy)
|
1447
|
+
assert not np.may_share_memory(sample_orig, new_sample)
|
1448
|
+
|
1449
|
+
def test_lloyd_errors(self):
|
1450
|
+
with pytest.raises(ValueError, match=r"`sample` is not a 2D array"):
|
1451
|
+
sample = [0, 1, 0.5]
|
1452
|
+
_lloyd_centroidal_voronoi_tessellation(sample)
|
1453
|
+
|
1454
|
+
msg = r"`sample` dimension is not >= 2"
|
1455
|
+
with pytest.raises(ValueError, match=msg):
|
1456
|
+
sample = [[0], [0.4], [1]]
|
1457
|
+
_lloyd_centroidal_voronoi_tessellation(sample)
|
1458
|
+
|
1459
|
+
msg = r"`sample` is not in unit hypercube"
|
1460
|
+
with pytest.raises(ValueError, match=msg):
|
1461
|
+
sample = [[-1.1, 0], [0.1, 0.4], [1, 2]]
|
1462
|
+
_lloyd_centroidal_voronoi_tessellation(sample)
|
1463
|
+
|
1464
|
+
|
1465
|
+
# mindist
|
1466
|
+
def l2_norm(sample):
|
1467
|
+
return distance.pdist(sample).min()
|
1468
|
+
|
1469
|
+
|
1470
|
+
@pytest.mark.parametrize('engine', [qmc.Halton, qmc.Sobol,
|
1471
|
+
qmc.LatinHypercube, qmc.PoissonDisk])
|
1472
|
+
def test_deterministic(engine):
|
1473
|
+
seed_number = 2359834584
|
1474
|
+
|
1475
|
+
rng = np.random.RandomState(seed_number)
|
1476
|
+
res1 = engine(d=1, seed=rng).random(4)
|
1477
|
+
rng = np.random.RandomState(seed_number)
|
1478
|
+
res2 = engine(d=1, seed=rng).random(4)
|
1479
|
+
assert_equal(res1, res2)
|
1480
|
+
|
1481
|
+
rng = np.random.default_rng(seed_number)
|
1482
|
+
res1 = engine(d=1, seed=rng).random(4)
|
1483
|
+
res2 = engine(d=1, rng=seed_number).random(4)
|
1484
|
+
assert_equal(res1, res2)
|
1485
|
+
rng = np.random.default_rng(seed_number)
|
1486
|
+
res3 = engine(d=1, rng=rng).random(4)
|
1487
|
+
assert_equal(res2, res1)
|
1488
|
+
assert_equal(res3, res1)
|
1489
|
+
|
1490
|
+
message = "got multiple values for argument now known as `rng`"
|
1491
|
+
with pytest.raises(TypeError, match=message):
|
1492
|
+
engine(d=1, rng=seed_number, seed=seed_number)
|