scipy 1.16.2__cp314-cp314t-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp314t-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp314t-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp314t-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp314t-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp314t-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp314t-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp314t-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp314t-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp314t-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp314t-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp314t-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp314t-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp314t-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp314t-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp314t-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp314t-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp314t-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp314t-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp314t-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp314t-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp314t-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp314t-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp314t-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp314t-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp314t-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp314t-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp314t-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp314t-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp314t-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp314t-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp314t-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp314t-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp314t-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp314t-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp314t-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp314t-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp314t-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp314t-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp314t-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp314t-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp314t-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp314t-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp314t-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp314t-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp314t-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp314t-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp314t-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp314t-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp314t-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp314t-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
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  1511. scipy/stats/tests/test_odds_ratio.py +148 -0
  1512. scipy/stats/tests/test_qmc.py +1492 -0
  1513. scipy/stats/tests/test_quantile.py +199 -0
  1514. scipy/stats/tests/test_rank.py +345 -0
  1515. scipy/stats/tests/test_relative_risk.py +95 -0
  1516. scipy/stats/tests/test_resampling.py +2000 -0
  1517. scipy/stats/tests/test_sampling.py +1450 -0
  1518. scipy/stats/tests/test_sensitivity_analysis.py +310 -0
  1519. scipy/stats/tests/test_stats.py +9707 -0
  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,1125 @@
1
+ #
2
+ # Created by: Pearu Peterson, March 2002
3
+ #
4
+ """ Test functions for linalg.matfuncs module
5
+
6
+ """
7
+ import functools
8
+ import pytest
9
+
10
+ import numpy as np
11
+ from numpy import array, identity, sqrt
12
+ from numpy.testing import (assert_array_almost_equal, assert_allclose, assert_,
13
+ assert_array_less, assert_array_equal, assert_warns,
14
+ suppress_warnings)
15
+
16
+ import scipy.linalg
17
+ from scipy.linalg import (funm, signm, logm, sqrtm, fractional_matrix_power,
18
+ expm, expm_frechet, expm_cond, norm, khatri_rao,
19
+ cosm, sinm, tanm, coshm, sinhm, tanhm)
20
+
21
+ from scipy.linalg import _matfuncs_inv_ssq
22
+ from scipy.linalg._matfuncs import pick_pade_structure
23
+ from scipy.linalg._matfuncs_inv_ssq import LogmExactlySingularWarning
24
+ import scipy.linalg._expm_frechet
25
+ from scipy.linalg import LinAlgWarning
26
+ from scipy.optimize import minimize
27
+
28
+
29
+ def _get_al_mohy_higham_2012_experiment_1():
30
+ """
31
+ Return the test matrix from Experiment (1) of [1]_.
32
+
33
+ References
34
+ ----------
35
+ .. [1] Awad H. Al-Mohy and Nicholas J. Higham (2012)
36
+ "Improved Inverse Scaling and Squaring Algorithms
37
+ for the Matrix Logarithm."
38
+ SIAM Journal on Scientific Computing, 34 (4). C152-C169.
39
+ ISSN 1095-7197
40
+
41
+ """
42
+ A = np.array([
43
+ [3.2346e-1, 3e4, 3e4, 3e4],
44
+ [0, 3.0089e-1, 3e4, 3e4],
45
+ [0, 0, 3.2210e-1, 3e4],
46
+ [0, 0, 0, 3.0744e-1]], dtype=float)
47
+ return A
48
+
49
+
50
+ class TestSignM:
51
+
52
+ def test_nils(self):
53
+ a = array([[29.2, -24.2, 69.5, 49.8, 7.],
54
+ [-9.2, 5.2, -18., -16.8, -2.],
55
+ [-10., 6., -20., -18., -2.],
56
+ [-9.6, 9.6, -25.5, -15.4, -2.],
57
+ [9.8, -4.8, 18., 18.2, 2.]])
58
+ cr = array([[11.94933333,-2.24533333,15.31733333,21.65333333,-2.24533333],
59
+ [-3.84266667,0.49866667,-4.59066667,-7.18666667,0.49866667],
60
+ [-4.08,0.56,-4.92,-7.6,0.56],
61
+ [-4.03466667,1.04266667,-5.59866667,-7.02666667,1.04266667],
62
+ [4.15733333,-0.50133333,4.90933333,7.81333333,-0.50133333]])
63
+ r = signm(a)
64
+ assert_array_almost_equal(r,cr)
65
+
66
+ def test_defective1(self):
67
+ a = array([[0.0,1,0,0],[1,0,1,0],[0,0,0,1],[0,0,1,0]])
68
+ signm(a)
69
+ #XXX: what would be the correct result?
70
+
71
+ def test_defective2(self):
72
+ a = array((
73
+ [29.2,-24.2,69.5,49.8,7.0],
74
+ [-9.2,5.2,-18.0,-16.8,-2.0],
75
+ [-10.0,6.0,-20.0,-18.0,-2.0],
76
+ [-9.6,9.6,-25.5,-15.4,-2.0],
77
+ [9.8,-4.8,18.0,18.2,2.0]))
78
+ signm(a)
79
+ #XXX: what would be the correct result?
80
+
81
+ def test_defective3(self):
82
+ a = array([[-2., 25., 0., 0., 0., 0., 0.],
83
+ [0., -3., 10., 3., 3., 3., 0.],
84
+ [0., 0., 2., 15., 3., 3., 0.],
85
+ [0., 0., 0., 0., 15., 3., 0.],
86
+ [0., 0., 0., 0., 3., 10., 0.],
87
+ [0., 0., 0., 0., 0., -2., 25.],
88
+ [0., 0., 0., 0., 0., 0., -3.]])
89
+ signm(a)
90
+ #XXX: what would be the correct result?
91
+
92
+
93
+ class TestLogM:
94
+ def setup_method(self):
95
+ self.rng = np.random.default_rng(1738098768840254)
96
+
97
+ @pytest.mark.filterwarnings("ignore:.*inaccurate.*:RuntimeWarning")
98
+ def test_nils(self):
99
+ a = array([[-2., 25., 0., 0., 0., 0., 0.],
100
+ [0., -3., 10., 3., 3., 3., 0.],
101
+ [0., 0., 2., 15., 3., 3., 0.],
102
+ [0., 0., 0., 0., 15., 3., 0.],
103
+ [0., 0., 0., 0., 3., 10., 0.],
104
+ [0., 0., 0., 0., 0., -2., 25.],
105
+ [0., 0., 0., 0., 0., 0., -3.]])
106
+ m = (identity(7)*3.1+0j)-a
107
+ logm(m)
108
+ #XXX: what would be the correct result?
109
+
110
+ @pytest.mark.filterwarnings("ignore:.*inaccurate.*:RuntimeWarning")
111
+ def test_al_mohy_higham_2012_experiment_1_logm(self):
112
+ # The logm completes the round trip successfully.
113
+ # Note that the expm leg of the round trip is badly conditioned.
114
+ A = _get_al_mohy_higham_2012_experiment_1()
115
+ A_logm = logm(A)
116
+ A_round_trip = expm(A_logm)
117
+ assert_allclose(A_round_trip, A, rtol=5e-5, atol=1e-14)
118
+
119
+ def test_al_mohy_higham_2012_experiment_1_funm_log(self):
120
+ # The raw funm with np.log does not complete the round trip.
121
+ # Note that the expm leg of the round trip is badly conditioned.
122
+ A = _get_al_mohy_higham_2012_experiment_1()
123
+ A_funm_log = funm(A, np.log)
124
+ A_round_trip = expm(A_funm_log)
125
+ assert_(not np.allclose(A_round_trip, A, rtol=1e-5, atol=1e-14))
126
+
127
+ def test_round_trip_random_float(self):
128
+ for n in range(1, 6):
129
+ M_unscaled = self.rng.uniform(size=(n, n))
130
+ for scale in np.logspace(-4, 4, 9):
131
+ M = M_unscaled * scale
132
+
133
+ # Eigenvalues are related to the branch cut.
134
+ W = np.linalg.eigvals(M)
135
+ err_msg = f'M:{M} eivals:{W}'
136
+
137
+ # Check sqrtm round trip because it is used within logm.
138
+ M_sqrtm = sqrtm(M)
139
+ M_sqrtm_round_trip = M_sqrtm @ M_sqrtm
140
+ assert_allclose(M_sqrtm_round_trip, M)
141
+
142
+ # Check logm round trip.
143
+ with suppress_warnings() as sup:
144
+ sup.filter(category=RuntimeWarning)
145
+
146
+ M_logm = logm(M)
147
+ M_logm_round_trip = expm(M_logm)
148
+ assert_allclose(M_logm_round_trip, M, err_msg=err_msg)
149
+
150
+ def test_round_trip_random_complex(self):
151
+
152
+ for n in range(1, 6):
153
+ M_unscaled = (self.rng.standard_normal((n, n)) +
154
+ 1j*self.rng.standard_normal((n, n)))
155
+ for scale in np.logspace(-4, 4, 9):
156
+ M = M_unscaled * scale
157
+ M_logm = logm(M)
158
+ M_round_trip = expm(M_logm)
159
+ assert_allclose(M_round_trip, M)
160
+
161
+ def test_logm_type_preservation_and_conversion(self):
162
+ # The logm matrix function should preserve the type of a matrix
163
+ # whose eigenvalues are positive with zero imaginary part.
164
+ # Test this preservation for variously structured matrices.
165
+ complex_dtype_chars = ('F', 'D', 'G')
166
+ for matrix_as_list in (
167
+ [[1, 0], [0, 1]],
168
+ [[1, 0], [1, 1]],
169
+ [[2, 1], [1, 1]],
170
+ [[2, 3], [1, 2]]):
171
+
172
+ # check that the spectrum has the expected properties
173
+ W = scipy.linalg.eigvals(matrix_as_list)
174
+ assert_(not any(w.imag or w.real < 0 for w in W))
175
+
176
+ # check float type preservation
177
+ A = np.array(matrix_as_list, dtype=float)
178
+ A_logm = logm(A)
179
+ assert_(A_logm.dtype.char not in complex_dtype_chars)
180
+
181
+ # check complex type preservation
182
+ A = np.array(matrix_as_list, dtype=complex)
183
+ A_logm = logm(A)
184
+ assert_(A_logm.dtype.char in complex_dtype_chars)
185
+
186
+ # check float->complex type conversion for the matrix negation
187
+ A = -np.array(matrix_as_list, dtype=float)
188
+ A_logm = logm(A)
189
+ assert_(A_logm.dtype.char in complex_dtype_chars)
190
+
191
+ def test_complex_spectrum_real_logm(self):
192
+ # This matrix has complex eigenvalues and real logm.
193
+ # Its output dtype depends on its input dtype.
194
+ M = [[1, 1, 2], [2, 1, 1], [1, 2, 1]]
195
+ for dt in float, complex:
196
+ X = np.array(M, dtype=dt)
197
+ w = scipy.linalg.eigvals(X)
198
+ assert_(1e-2 < np.absolute(w.imag).sum())
199
+ Y = logm(X)
200
+ assert_(np.issubdtype(Y.dtype, np.inexact))
201
+ assert_allclose(expm(Y), X)
202
+
203
+ def test_real_mixed_sign_spectrum(self):
204
+ # These matrices have real eigenvalues with mixed signs.
205
+ # The output logm dtype is complex, regardless of input dtype.
206
+ for M in (
207
+ [[1, 0], [0, -1]],
208
+ [[0, 1], [1, 0]]):
209
+ for dt in float, complex:
210
+ A = np.array(M, dtype=dt)
211
+ A_logm, info = logm(A)
212
+ assert_(np.issubdtype(A_logm.dtype, np.complexfloating))
213
+
214
+ @pytest.mark.thread_unsafe
215
+ def test_exactly_singular(self):
216
+ A = np.array([[0, 0], [1j, 1j]])
217
+ B = np.asarray([[1, 1], [0, 0]])
218
+ for M in A, A.T, B, B.T:
219
+ expected_warning = _matfuncs_inv_ssq.LogmExactlySingularWarning
220
+ L = assert_warns(expected_warning, logm, M)
221
+ E = expm(L)
222
+ assert_allclose(E, M, atol=1e-14)
223
+
224
+ @pytest.mark.thread_unsafe
225
+ def test_nearly_singular(self):
226
+ M = np.array([[1e-100]])
227
+ expected_warning = _matfuncs_inv_ssq.LogmNearlySingularWarning
228
+ L = assert_warns(expected_warning, logm, M)
229
+ E = expm(L)
230
+ assert_allclose(E, M, atol=1e-14)
231
+
232
+ def test_opposite_sign_complex_eigenvalues(self):
233
+ # See gh-6113
234
+ E = [[0, 1], [-1, 0]]
235
+ L = [[0, np.pi*0.5], [-np.pi*0.5, 0]]
236
+ assert_allclose(expm(L), E, atol=1e-14)
237
+ assert_allclose(logm(E), L, atol=1e-14)
238
+ E = [[1j, 4], [0, -1j]]
239
+ L = [[1j*np.pi*0.5, 2*np.pi], [0, -1j*np.pi*0.5]]
240
+ assert_allclose(expm(L), E, atol=1e-14)
241
+ assert_allclose(logm(E), L, atol=1e-14)
242
+ E = [[1j, 0], [0, -1j]]
243
+ L = [[1j*np.pi*0.5, 0], [0, -1j*np.pi*0.5]]
244
+ assert_allclose(expm(L), E, atol=1e-14)
245
+ assert_allclose(logm(E), L, atol=1e-14)
246
+
247
+ def test_readonly(self):
248
+ n = 5
249
+ a = np.ones((n, n)) + np.identity(n)
250
+ a.flags.writeable = False
251
+ logm(a)
252
+
253
+ @pytest.mark.xfail(reason="ValueError: attempt to get argmax of an empty sequence")
254
+ @pytest.mark.parametrize('dt', [int, float, np.float32, complex, np.complex64])
255
+ def test_empty(self, dt):
256
+ a = np.empty((0, 0), dtype=dt)
257
+ log_a = logm(a)
258
+ a0 = np.eye(2, dtype=dt)
259
+ log_a0 = logm(a0)
260
+
261
+ assert log_a.shape == (0, 0)
262
+ assert log_a.dtype == log_a0.dtype
263
+
264
+ @pytest.mark.thread_unsafe
265
+ @pytest.mark.parametrize('dtype', [int, float, np.float32, complex, np.complex64])
266
+ def test_no_ZeroDivisionError(self, dtype):
267
+ # gh-17136 reported inconsistent behavior in `logm` depending on input dtype:
268
+ # sometimes it raised an error, and sometimes it printed a warning message.
269
+ # check that this is resolved and that the warning is emitted properly.
270
+ with (pytest.warns(RuntimeWarning, match="logm result may be inaccurate"),
271
+ pytest.warns(LogmExactlySingularWarning)):
272
+ logm(np.zeros((2, 2), dtype=dtype))
273
+
274
+
275
+ class TestSqrtM:
276
+
277
+ def test_round_trip_random_float(self):
278
+ rng = np.random.default_rng(1738151906092735)
279
+ for n in range(1, 6):
280
+ M_unscaled = rng.standard_normal((n, n))
281
+ for scale in np.logspace(-4, 4, 9):
282
+ M = M_unscaled * scale
283
+ M_sqrtm = sqrtm(M)
284
+ M_sqrtm_round_trip = M_sqrtm.dot(M_sqrtm)
285
+ assert_allclose(M_sqrtm_round_trip, M)
286
+
287
+ def test_round_trip_random_complex(self):
288
+ rng = np.random.default_rng(1738151906092736)
289
+ for n in range(1, 6):
290
+ M_unscaled = (rng.standard_normal((n, n)) +
291
+ 1j * rng.standard_normal((n, n)))
292
+ for scale in np.logspace(-4, 4, 9):
293
+ M = M_unscaled * scale
294
+ M_sqrtm = sqrtm(M)
295
+ M_sqrtm_round_trip = M_sqrtm.dot(M_sqrtm)
296
+ assert_allclose(M_sqrtm_round_trip, M)
297
+
298
+ def test_bad(self):
299
+ # See https://web.archive.org/web/20051220232650/http://www.maths.man.ac.uk/~nareports/narep336.ps.gz
300
+ e = 2**-5
301
+ se = sqrt(e)
302
+ a = array([[1.0,0,0,1],
303
+ [0,e,0,0],
304
+ [0,0,e,0],
305
+ [0,0,0,1]])
306
+ sa = array([[1,0,0,0.5],
307
+ [0,se,0,0],
308
+ [0,0,se,0],
309
+ [0,0,0,1]])
310
+ assert_array_almost_equal(sa @ sa, a)
311
+ # Check default sqrtm.
312
+ esa = sqrtm(a)
313
+ assert_array_almost_equal(esa @ esa, a)
314
+
315
+ def test_sqrtm_type_preservation_and_conversion(self):
316
+ # The sqrtm matrix function should preserve the type of a matrix
317
+ # whose eigenvalues are nonnegative with zero imaginary part.
318
+ # Test this preservation for variously structured matrices.
319
+ complex_dtype_chars = ('F', 'D', 'G')
320
+ for matrix_as_list in (
321
+ [[1, 0], [0, 1]],
322
+ [[1, 0], [1, 1]],
323
+ [[2, 1], [1, 1]],
324
+ [[2, 3], [1, 2]],
325
+ [[1, 1], [1, 1]]):
326
+
327
+ # check that the spectrum has the expected properties
328
+ W = scipy.linalg.eigvals(matrix_as_list)
329
+ assert_(not any(w.imag or w.real < 0 for w in W))
330
+
331
+ # Last test matrix is singular so suppress the warning
332
+ with suppress_warnings() as sup:
333
+ sup.filter(category=LinAlgWarning)
334
+
335
+ # check float type preservation
336
+ A = np.array(matrix_as_list, dtype=float)
337
+ A_sqrtm = sqrtm(A)
338
+ assert_(A_sqrtm.dtype.char not in complex_dtype_chars)
339
+
340
+ # check complex type preservation
341
+ A = np.array(matrix_as_list, dtype=complex)
342
+ A_sqrtm = sqrtm(A)
343
+ assert_(A_sqrtm.dtype.char in complex_dtype_chars)
344
+
345
+ # check float->complex type conversion for the matrix negation
346
+ A = -np.array(matrix_as_list, dtype=float)
347
+ A_sqrtm = sqrtm(A)
348
+ assert_(A_sqrtm.dtype.char in complex_dtype_chars)
349
+
350
+ def test_sqrtm_type_conversion_mixed_sign_or_complex_spectrum(self):
351
+ complex_dtype_chars = ('F', 'D', 'G')
352
+ for matrix_as_list in (
353
+ [[1, 0], [0, -1]],
354
+ [[0, 1], [1, 0]],
355
+ [[0, 1, 0], [0, 0, -1], [1, 0, 0]]):
356
+
357
+ # check that the spectrum has the expected properties
358
+ W = scipy.linalg.eigvals(matrix_as_list)
359
+ assert_(any(w.imag or w.real < 0 for w in W))
360
+
361
+ # check complex->complex
362
+ A = np.array(matrix_as_list, dtype=complex)
363
+ A_sqrtm = sqrtm(A)
364
+ assert_(A_sqrtm.dtype.char in complex_dtype_chars)
365
+
366
+ # check float->complex
367
+ A = np.array(matrix_as_list, dtype=float)
368
+ A_sqrtm = sqrtm(A)
369
+ assert_(A_sqrtm.dtype.char in complex_dtype_chars)
370
+
371
+ def test_al_mohy_higham_2012_experiment_1(self):
372
+ # Matrix square root of a tricky upper triangular matrix.
373
+ A = _get_al_mohy_higham_2012_experiment_1()
374
+ A_sqrtm = sqrtm(A)
375
+ A_round_trip = A_sqrtm @ A_sqrtm
376
+ assert_allclose(A_round_trip, A, rtol=1e-5)
377
+ assert_allclose(np.tril(A_round_trip), np.tril(A))
378
+
379
+ def test_strict_upper_triangular(self):
380
+ # This matrix has no square root but upper triangular hence upper
381
+ # triangle will be filled with junk values.
382
+ for dt in int, float:
383
+ A = np.array([
384
+ [0, 3, 0, 0],
385
+ [0, 0, 3, 0],
386
+ [0, 0, 0, 3],
387
+ [0, 0, 0, 0]], dtype=dt)
388
+ with suppress_warnings() as sup:
389
+ sup.filter(category=LinAlgWarning)
390
+
391
+ A_sqrtm = sqrtm(A)
392
+ assert_allclose(np.tril(A_sqrtm), np.zeros((4, 4)))
393
+ assert np.isnan(A_sqrtm).any()
394
+ assert np.isinf(A_sqrtm).any()
395
+
396
+ # Future edit: This squareroot is not possible to find algorithmically
397
+ # with the current methods. Now sqrtm docstring has another example of
398
+ # such matrix whose squareroot is not a polynomial in it. Hence no need
399
+ # to test it here.
400
+ """
401
+ def test_weird_matrix(self):
402
+ # The square root of matrix B exists.
403
+ for dt in int, float:
404
+ A = np.array([
405
+ [0, 0, 1],
406
+ [0, 0, 0],
407
+ [0, 1, 0]], dtype=dt)
408
+ B = np.array([
409
+ [0, 1, 0],
410
+ [0, 0, 0],
411
+ [0, 0, 0]], dtype=dt)
412
+ assert_array_equal(B, A @ A)
413
+
414
+ # But scipy sqrtm is not clever enough to find it.
415
+ B_sqrtm, info = sqrtm(B, disp=False)
416
+ assert_(np.isnan(B_sqrtm).all())
417
+ """
418
+
419
+ def test_opposite_sign_complex_eigenvalues(self):
420
+ M = [[2j, 4], [0, -2j]]
421
+ R = [[1+1j, 2], [0, 1-1j]]
422
+ assert_allclose(np.dot(R, R), M, atol=1e-14)
423
+ assert_allclose(sqrtm(M), R, atol=1e-14)
424
+
425
+ def test_gh4866(self):
426
+ M = np.array([[1, 0, 0, 1],
427
+ [0, 0, 0, 0],
428
+ [0, 0, 0, 0],
429
+ [1, 0, 0, 1]])
430
+ R = np.array([[sqrt(0.5), 0, 0, sqrt(0.5)],
431
+ [0, 0, 0, 0],
432
+ [0, 0, 0, 0],
433
+ [sqrt(0.5), 0, 0, sqrt(0.5)]])
434
+ assert_allclose(R @ R, M, atol=1e-14)
435
+ with suppress_warnings() as sup:
436
+ sup.filter(category=LinAlgWarning)
437
+
438
+ assert_allclose(sqrtm(M), R, atol=1e-14)
439
+
440
+ def test_gh5336(self):
441
+ M = np.diag([2, 1, 0])
442
+ R = np.diag([sqrt(2), 1, 0])
443
+ assert_allclose(R @ R, M, atol=1e-14)
444
+ with suppress_warnings() as sup:
445
+ sup.filter(category=LinAlgWarning)
446
+ assert_allclose(sqrtm(M), R, atol=1e-14)
447
+
448
+ def test_gh7839(self):
449
+ M = np.zeros((2, 2))
450
+ R = np.zeros((2, 2))
451
+ # Catch and silence LinAlgWarning
452
+ with suppress_warnings() as sup:
453
+ sup.filter(category=LinAlgWarning)
454
+
455
+ assert_allclose(sqrtm(M), R, atol=1e-14)
456
+
457
+ def test_gh17918(self):
458
+ M = np.empty((19, 19))
459
+ M.fill(0.94)
460
+ np.fill_diagonal(M, 1)
461
+ assert np.isrealobj(sqrtm(M))
462
+
463
+ def test_gh23278(self):
464
+ M = np.array([[1., 0., 0.], [0, 1, -1j], [0, 1j, 2]])
465
+ sq = sqrtm(M)
466
+ assert_allclose(sq @ sq, M, atol=1e-14)
467
+ sq = sqrtm(M.astype(np.complex64))
468
+ assert_allclose(sq @ sq, M, atol=1e-6)
469
+
470
+ def test_data_size_preservation_uint_in_float_out(self):
471
+ M = np.eye(10, dtype=np.uint8)
472
+ assert sqrtm(M).dtype == np.float64
473
+ M = np.eye(10, dtype=np.uint16)
474
+ assert sqrtm(M).dtype == np.float64
475
+ M = np.eye(10, dtype=np.uint32)
476
+ assert sqrtm(M).dtype == np.float64
477
+ M = np.eye(10, dtype=np.uint64)
478
+ assert sqrtm(M).dtype == np.float64
479
+
480
+ def test_data_size_preservation_int_in_float_out(self):
481
+ M = np.eye(10, dtype=np.int8)
482
+ assert sqrtm(M).dtype == np.float64
483
+ M = np.eye(10, dtype=np.int16)
484
+ assert sqrtm(M).dtype == np.float64
485
+ M = np.eye(10, dtype=np.int32)
486
+ assert sqrtm(M).dtype == np.float64
487
+ M = np.eye(10, dtype=np.int64)
488
+ assert sqrtm(M).dtype == np.float64
489
+
490
+ def test_data_size_preservation_int_in_comp_out(self):
491
+ M = np.array([[2, 4], [0, -2]], dtype=np.int8)
492
+ assert sqrtm(M).dtype == np.complex128
493
+ M = np.array([[2, 4], [0, -2]], dtype=np.int16)
494
+ assert sqrtm(M).dtype == np.complex128
495
+ M = np.array([[2, 4], [0, -2]], dtype=np.int32)
496
+ assert sqrtm(M).dtype == np.complex128
497
+ M = np.array([[2, 4], [0, -2]], dtype=np.int64)
498
+ assert sqrtm(M).dtype == np.complex128
499
+
500
+ def test_data_size_preservation_float_in_float_out(self):
501
+ M = np.eye(10, dtype=np.float16)
502
+ assert sqrtm(M).dtype == np.float32
503
+ M = np.eye(10, dtype=np.float32)
504
+ assert sqrtm(M).dtype == np.float32
505
+ M = np.eye(10, dtype=np.float64)
506
+ assert sqrtm(M).dtype == np.float64
507
+ if hasattr(np, 'float128'):
508
+ M = np.eye(10, dtype=np.float128)
509
+ assert sqrtm(M).dtype == np.float64
510
+
511
+ def test_data_size_preservation_float_in_comp_out(self):
512
+ M = np.array([[2, 4], [0, -2]], dtype=np.float16)
513
+ assert sqrtm(M).dtype == np.complex64
514
+ M = np.array([[2, 4], [0, -2]], dtype=np.float32)
515
+ assert sqrtm(M).dtype == np.complex64
516
+ M = np.array([[2, 4], [0, -2]], dtype=np.float64)
517
+ assert sqrtm(M).dtype == np.complex128
518
+ if hasattr(np, 'float128') and hasattr(np, 'complex256'):
519
+ M = np.array([[2, 4], [0, -2]], dtype=np.float128)
520
+ assert sqrtm(M).dtype == np.complex128
521
+
522
+ def test_data_size_preservation_comp_in_comp_out(self):
523
+ M = np.array([[2j, 4], [0, -2j]], dtype=np.complex64)
524
+ assert sqrtm(M).dtype == np.complex64
525
+ M = np.array([[2j, 4], [0, -2j]], dtype=np.complex128)
526
+ assert sqrtm(M).dtype == np.complex128
527
+ if hasattr(np, 'complex256'):
528
+ M = np.array([[2j, 4], [0, -2j]], dtype=np.complex256)
529
+ assert sqrtm(M).dtype == np.complex128
530
+
531
+ @pytest.mark.parametrize('dt', [int, float, np.float32, complex, np.complex64])
532
+ def test_empty(self, dt):
533
+ a = np.empty((0, 0), dtype=dt)
534
+ s = sqrtm(a)
535
+ a0 = np.eye(2, dtype=dt)
536
+ s0 = sqrtm(a0)
537
+
538
+ assert s.shape == (0, 0)
539
+ assert s.dtype == s0.dtype
540
+
541
+ def test_cf_noncontig_nd_inputs(self):
542
+ # Check that non-contiguous arrays are handled correctly.
543
+ # Generate an L, U pair for invertible random matrix.
544
+ rng = np.random.default_rng(1738151906092737)
545
+ n = 13
546
+ A = rng.uniform(size=(3, 2*n, 2*n))
547
+ L, U = np.tril(A, k=-1) + np.eye(2*n), np.triu(A)
548
+ A = L @ U
549
+ # Create strided views of 3D array.
550
+ A_noncontig_c = A[:, ::2, ::2]
551
+ A_noncontig_f = np.asfortranarray(A)[:, 1::2, 1::2]
552
+ assert_allclose(sqrtm(A[:, ::2, ::2]), sqrtm(A_noncontig_c))
553
+ assert_allclose(sqrtm(A[:, 1::2, 1::2]), sqrtm(A_noncontig_f))
554
+
555
+ def test_empty_sizes(self):
556
+ A = np.empty(shape=[4, 0, 5, 5], dtype=float)
557
+ assert_array_equal(sqrtm(A), A)
558
+
559
+ def test_negative_strides(self):
560
+ rng = np.random.default_rng(1738151906092738)
561
+ A = rng.uniform(size=(3, 5, 5))
562
+ A_negneg_orig = A[:, ::-1, ::-1]
563
+ A_negneg_copy = A[:, ::-1, ::-1].copy()
564
+ assert_allclose(sqrtm(A_negneg_orig), sqrtm(A_negneg_copy))
565
+
566
+ A_posneg_orig = A[:, :, ::-1]
567
+ A_posneg_copy = A[:, :, ::-1].copy()
568
+ assert_allclose(sqrtm(A_posneg_orig), sqrtm(A_posneg_copy))
569
+
570
+ A_negpos_orig = A[:, ::-1, :]
571
+ A_negpos_copy = A[:, ::-1, :].copy()
572
+ assert_allclose(sqrtm(A_negpos_orig), sqrtm(A_negpos_copy))
573
+
574
+
575
+ class TestFractionalMatrixPower:
576
+ def test_round_trip_random_complex(self):
577
+ np.random.seed(1234)
578
+ for p in range(1, 5):
579
+ for n in range(1, 5):
580
+ M_unscaled = np.random.randn(n, n) + 1j * np.random.randn(n, n)
581
+ for scale in np.logspace(-4, 4, 9):
582
+ M = M_unscaled * scale
583
+ M_root = fractional_matrix_power(M, 1/p)
584
+ M_round_trip = np.linalg.matrix_power(M_root, p)
585
+ assert_allclose(M_round_trip, M)
586
+
587
+ def test_round_trip_random_float(self):
588
+ # This test is more annoying because it can hit the branch cut;
589
+ # this happens when the matrix has an eigenvalue
590
+ # with no imaginary component and with a real negative component,
591
+ # and it means that the principal branch does not exist.
592
+ np.random.seed(1234)
593
+ for p in range(1, 5):
594
+ for n in range(1, 5):
595
+ M_unscaled = np.random.randn(n, n)
596
+ for scale in np.logspace(-4, 4, 9):
597
+ M = M_unscaled * scale
598
+ M_root = fractional_matrix_power(M, 1/p)
599
+ M_round_trip = np.linalg.matrix_power(M_root, p)
600
+ assert_allclose(M_round_trip, M)
601
+
602
+ def test_larger_abs_fractional_matrix_powers(self):
603
+ np.random.seed(1234)
604
+ for n in (2, 3, 5):
605
+ for i in range(10):
606
+ M = np.random.randn(n, n) + 1j * np.random.randn(n, n)
607
+ M_one_fifth = fractional_matrix_power(M, 0.2)
608
+ # Test the round trip.
609
+ M_round_trip = np.linalg.matrix_power(M_one_fifth, 5)
610
+ assert_allclose(M, M_round_trip)
611
+ # Test a large abs fractional power.
612
+ X = fractional_matrix_power(M, -5.4)
613
+ Y = np.linalg.matrix_power(M_one_fifth, -27)
614
+ assert_allclose(X, Y)
615
+ # Test another large abs fractional power.
616
+ X = fractional_matrix_power(M, 3.8)
617
+ Y = np.linalg.matrix_power(M_one_fifth, 19)
618
+ assert_allclose(X, Y)
619
+
620
+ def test_random_matrices_and_powers(self):
621
+ # Each independent iteration of this fuzz test picks random parameters.
622
+ # It tries to hit some edge cases.
623
+ rng = np.random.default_rng(1726500458620605)
624
+ nsamples = 20
625
+ for i in range(nsamples):
626
+ # Sample a matrix size and a random real power.
627
+ n = rng.integers(1, 5)
628
+ p = rng.random()
629
+
630
+ # Sample a random real or complex matrix.
631
+ matrix_scale = np.exp(rng.integers(-4, 5))
632
+ A = rng.random(size=[n, n])
633
+ if [True, False][rng.choice(2)]:
634
+ A = A + 1j * rng.random(size=[n, n])
635
+ A = A * matrix_scale
636
+
637
+ # Check a couple of analytically equivalent ways
638
+ # to compute the fractional matrix power.
639
+ # These can be compared because they both use the principal branch.
640
+ A_power = fractional_matrix_power(A, p)
641
+ A_logm = logm(A)
642
+ A_power_expm_logm = expm(A_logm * p)
643
+ assert_allclose(A_power, A_power_expm_logm)
644
+
645
+ def test_al_mohy_higham_2012_experiment_1(self):
646
+ # Fractional powers of a tricky upper triangular matrix.
647
+ A = _get_al_mohy_higham_2012_experiment_1()
648
+
649
+ # Test remainder matrix power.
650
+ A_funm_sqrt = funm(A, np.sqrt)
651
+ A_sqrtm = sqrtm(A)
652
+ A_rem_power = _matfuncs_inv_ssq._remainder_matrix_power(A, 0.5)
653
+ A_power = fractional_matrix_power(A, 0.5)
654
+ assert_allclose(A_rem_power, A_power, rtol=1e-11)
655
+ assert_allclose(A_sqrtm, A_power)
656
+ assert_allclose(A_sqrtm, A_funm_sqrt)
657
+
658
+ # Test more fractional powers.
659
+ for p in (1/2, 5/3):
660
+ A_power = fractional_matrix_power(A, p)
661
+ A_round_trip = fractional_matrix_power(A_power, 1/p)
662
+ assert_allclose(A_round_trip, A, rtol=1e-2)
663
+ assert_allclose(np.tril(A_round_trip, 1), np.tril(A, 1))
664
+
665
+ def test_briggs_helper_function(self):
666
+ np.random.seed(1234)
667
+ for a in np.random.randn(10) + 1j * np.random.randn(10):
668
+ for k in range(5):
669
+ x_observed = _matfuncs_inv_ssq._briggs_helper_function(a, k)
670
+ x_expected = a ** np.exp2(-k) - 1
671
+ assert_allclose(x_observed, x_expected)
672
+
673
+ def test_type_preservation_and_conversion(self):
674
+ # The fractional_matrix_power matrix function should preserve
675
+ # the type of a matrix whose eigenvalues
676
+ # are positive with zero imaginary part.
677
+ # Test this preservation for variously structured matrices.
678
+ complex_dtype_chars = ('F', 'D', 'G')
679
+ for matrix_as_list in (
680
+ [[1, 0], [0, 1]],
681
+ [[1, 0], [1, 1]],
682
+ [[2, 1], [1, 1]],
683
+ [[2, 3], [1, 2]]):
684
+
685
+ # check that the spectrum has the expected properties
686
+ W = scipy.linalg.eigvals(matrix_as_list)
687
+ assert_(not any(w.imag or w.real < 0 for w in W))
688
+
689
+ # Check various positive and negative powers
690
+ # with absolute values bigger and smaller than 1.
691
+ for p in (-2.4, -0.9, 0.2, 3.3):
692
+
693
+ # check float type preservation
694
+ A = np.array(matrix_as_list, dtype=float)
695
+ A_power = fractional_matrix_power(A, p)
696
+ assert_(A_power.dtype.char not in complex_dtype_chars)
697
+
698
+ # check complex type preservation
699
+ A = np.array(matrix_as_list, dtype=complex)
700
+ A_power = fractional_matrix_power(A, p)
701
+ assert_(A_power.dtype.char in complex_dtype_chars)
702
+
703
+ # check float->complex for the matrix negation
704
+ A = -np.array(matrix_as_list, dtype=float)
705
+ A_power = fractional_matrix_power(A, p)
706
+ assert_(A_power.dtype.char in complex_dtype_chars)
707
+
708
+ def test_type_conversion_mixed_sign_or_complex_spectrum(self):
709
+ complex_dtype_chars = ('F', 'D', 'G')
710
+ for matrix_as_list in (
711
+ [[1, 0], [0, -1]],
712
+ [[0, 1], [1, 0]],
713
+ [[0, 1, 0], [0, 0, 1], [1, 0, 0]]):
714
+
715
+ # check that the spectrum has the expected properties
716
+ W = scipy.linalg.eigvals(matrix_as_list)
717
+ assert_(any(w.imag or w.real < 0 for w in W))
718
+
719
+ # Check various positive and negative powers
720
+ # with absolute values bigger and smaller than 1.
721
+ for p in (-2.4, -0.9, 0.2, 3.3):
722
+
723
+ # check complex->complex
724
+ A = np.array(matrix_as_list, dtype=complex)
725
+ A_power = fractional_matrix_power(A, p)
726
+ assert_(A_power.dtype.char in complex_dtype_chars)
727
+
728
+ # check float->complex
729
+ A = np.array(matrix_as_list, dtype=float)
730
+ A_power = fractional_matrix_power(A, p)
731
+ assert_(A_power.dtype.char in complex_dtype_chars)
732
+
733
+ @pytest.mark.xfail(reason='Too unstable across LAPACKs.')
734
+ def test_singular(self):
735
+ # Negative fractional powers do not work with singular matrices.
736
+ for matrix_as_list in (
737
+ [[0, 0], [0, 0]],
738
+ [[1, 1], [1, 1]],
739
+ [[1, 2], [3, 6]],
740
+ [[0, 0, 0], [0, 1, 1], [0, -1, 1]]):
741
+
742
+ # Check fractional powers both for float and for complex types.
743
+ for newtype in (float, complex):
744
+ A = np.array(matrix_as_list, dtype=newtype)
745
+ for p in (-0.7, -0.9, -2.4, -1.3):
746
+ A_power = fractional_matrix_power(A, p)
747
+ assert_(np.isnan(A_power).all())
748
+ for p in (0.2, 1.43):
749
+ A_power = fractional_matrix_power(A, p)
750
+ A_round_trip = fractional_matrix_power(A_power, 1/p)
751
+ assert_allclose(A_round_trip, A)
752
+
753
+ def test_opposite_sign_complex_eigenvalues(self):
754
+ M = [[2j, 4], [0, -2j]]
755
+ R = [[1+1j, 2], [0, 1-1j]]
756
+ assert_allclose(np.dot(R, R), M, atol=1e-14)
757
+ assert_allclose(fractional_matrix_power(M, 0.5), R, atol=1e-14)
758
+
759
+
760
+ class TestExpM:
761
+ def test_zero(self):
762
+ a = array([[0.,0],[0,0]])
763
+ assert_array_almost_equal(expm(a),[[1,0],[0,1]])
764
+
765
+ def test_single_elt(self):
766
+ elt = expm(1)
767
+ assert_allclose(elt, np.array([[np.e]]))
768
+
769
+ @pytest.mark.parametrize('func', [expm, cosm, sinm, tanm, coshm, sinhm, tanhm])
770
+ @pytest.mark.parametrize('dt',[int, float, np.float32, complex, np.complex64])
771
+ @pytest.mark.parametrize('shape', [(0, 0), (1, 1)])
772
+ def test_small_empty_matrix_input(self, func, dt, shape):
773
+ # regression test for gh-11082 / gh-20372 - test behavior of expm
774
+ # and related functions for small and zero-sized arrays.
775
+ A = np.zeros(shape, dtype=dt)
776
+ A0 = np.zeros((10, 10), dtype=dt)
777
+ result = func(A)
778
+ result0 = func(A0)
779
+ assert result.shape == shape
780
+ assert result.dtype == result0.dtype
781
+
782
+ def test_2x2_input(self):
783
+ E = np.e
784
+ a = array([[1, 4], [1, 1]])
785
+ aa = (E**4 + 1)/(2*E)
786
+ bb = (E**4 - 1)/E
787
+ assert_allclose(expm(a), array([[aa, bb], [bb/4, aa]]))
788
+ assert expm(a.astype(np.complex64)).dtype.char == 'F'
789
+ assert expm(a.astype(np.float32)).dtype.char == 'f'
790
+
791
+ def test_nx2x2_input(self):
792
+ E = np.e
793
+ # These are integer matrices with integer eigenvalues
794
+ a = np.array([[[1, 4], [1, 1]],
795
+ [[1, 3], [1, -1]],
796
+ [[1, 3], [4, 5]],
797
+ [[1, 3], [5, 3]],
798
+ [[4, 5], [-3, -4]]], order='F')
799
+ # Exact results are computed symbolically
800
+ a_res = np.array([
801
+ [[(E**4+1)/(2*E), (E**4-1)/E],
802
+ [(E**4-1)/4/E, (E**4+1)/(2*E)]],
803
+ [[1/(4*E**2)+(3*E**2)/4, (3*E**2)/4-3/(4*E**2)],
804
+ [E**2/4-1/(4*E**2), 3/(4*E**2)+E**2/4]],
805
+ [[3/(4*E)+E**7/4, -3/(8*E)+(3*E**7)/8],
806
+ [-1/(2*E)+E**7/2, 1/(4*E)+(3*E**7)/4]],
807
+ [[5/(8*E**2)+(3*E**6)/8, -3/(8*E**2)+(3*E**6)/8],
808
+ [-5/(8*E**2)+(5*E**6)/8, 3/(8*E**2)+(5*E**6)/8]],
809
+ [[-3/(2*E)+(5*E)/2, -5/(2*E)+(5*E)/2],
810
+ [3/(2*E)-(3*E)/2, 5/(2*E)-(3*E)/2]]
811
+ ])
812
+ assert_allclose(expm(a), a_res)
813
+
814
+ def test_readonly(self):
815
+ n = 7
816
+ a = np.ones((n, n))
817
+ a.flags.writeable = False
818
+ expm(a)
819
+
820
+ @pytest.mark.thread_unsafe
821
+ @pytest.mark.fail_slow(5)
822
+ def test_gh18086(self):
823
+ A = np.zeros((400, 400), dtype=float)
824
+ rng = np.random.default_rng(100)
825
+ i = rng.integers(0, 399, 500)
826
+ j = rng.integers(0, 399, 500)
827
+ A[i, j] = rng.random(500)
828
+ # Problem appears when m = 9
829
+ Am = np.empty((5, 400, 400), dtype=float)
830
+ Am[0] = A.copy()
831
+ m, s = pick_pade_structure(Am)
832
+ assert m == 9
833
+ # Check that result is accurate
834
+ first_res = expm(A)
835
+ np.testing.assert_array_almost_equal(logm(first_res), A)
836
+ # Check that result is consistent
837
+ for i in range(5):
838
+ next_res = expm(A)
839
+ np.testing.assert_array_almost_equal(first_res, next_res)
840
+
841
+
842
+ class TestExpmFrechet:
843
+
844
+ def test_expm_frechet(self):
845
+ # a test of the basic functionality
846
+ M = np.array([
847
+ [1, 2, 3, 4],
848
+ [5, 6, 7, 8],
849
+ [0, 0, 1, 2],
850
+ [0, 0, 5, 6],
851
+ ], dtype=float)
852
+ A = np.array([
853
+ [1, 2],
854
+ [5, 6],
855
+ ], dtype=float)
856
+ E = np.array([
857
+ [3, 4],
858
+ [7, 8],
859
+ ], dtype=float)
860
+ expected_expm = scipy.linalg.expm(A)
861
+ expected_frechet = scipy.linalg.expm(M)[:2, 2:]
862
+ for kwargs in ({}, {'method':'SPS'}, {'method':'blockEnlarge'}):
863
+ observed_expm, observed_frechet = expm_frechet(A, E, **kwargs)
864
+ assert_allclose(expected_expm, observed_expm)
865
+ assert_allclose(expected_frechet, observed_frechet)
866
+
867
+ def test_small_norm_expm_frechet(self):
868
+ # methodically test matrices with a range of norms, for better coverage
869
+ M_original = np.array([
870
+ [1, 2, 3, 4],
871
+ [5, 6, 7, 8],
872
+ [0, 0, 1, 2],
873
+ [0, 0, 5, 6],
874
+ ], dtype=float)
875
+ A_original = np.array([
876
+ [1, 2],
877
+ [5, 6],
878
+ ], dtype=float)
879
+ E_original = np.array([
880
+ [3, 4],
881
+ [7, 8],
882
+ ], dtype=float)
883
+ A_original_norm_1 = scipy.linalg.norm(A_original, 1)
884
+ selected_m_list = [1, 3, 5, 7, 9, 11, 13, 15]
885
+ m_neighbor_pairs = zip(selected_m_list[:-1], selected_m_list[1:])
886
+ for ma, mb in m_neighbor_pairs:
887
+ ell_a = scipy.linalg._expm_frechet.ell_table_61[ma]
888
+ ell_b = scipy.linalg._expm_frechet.ell_table_61[mb]
889
+ target_norm_1 = 0.5 * (ell_a + ell_b)
890
+ scale = target_norm_1 / A_original_norm_1
891
+ M = scale * M_original
892
+ A = scale * A_original
893
+ E = scale * E_original
894
+ expected_expm = scipy.linalg.expm(A)
895
+ expected_frechet = scipy.linalg.expm(M)[:2, 2:]
896
+ observed_expm, observed_frechet = expm_frechet(A, E)
897
+ assert_allclose(expected_expm, observed_expm)
898
+ assert_allclose(expected_frechet, observed_frechet)
899
+
900
+ def test_fuzz(self):
901
+ rng = np.random.default_rng(1726500908359153)
902
+ # try a bunch of crazy inputs
903
+ rfuncs = (
904
+ np.random.uniform,
905
+ np.random.normal,
906
+ np.random.standard_cauchy,
907
+ np.random.exponential)
908
+ ntests = 100
909
+ for i in range(ntests):
910
+ rfunc = rfuncs[rng.choice(4)]
911
+ target_norm_1 = rng.exponential()
912
+ n = rng.integers(2, 16)
913
+ A_original = rfunc(size=(n,n))
914
+ E_original = rfunc(size=(n,n))
915
+ A_original_norm_1 = scipy.linalg.norm(A_original, 1)
916
+ scale = target_norm_1 / A_original_norm_1
917
+ A = scale * A_original
918
+ E = scale * E_original
919
+ M = np.vstack([
920
+ np.hstack([A, E]),
921
+ np.hstack([np.zeros_like(A), A])])
922
+ expected_expm = scipy.linalg.expm(A)
923
+ expected_frechet = scipy.linalg.expm(M)[:n, n:]
924
+ observed_expm, observed_frechet = expm_frechet(A, E)
925
+ assert_allclose(expected_expm, observed_expm, atol=5e-8)
926
+ assert_allclose(expected_frechet, observed_frechet, atol=1e-7)
927
+
928
+ def test_problematic_matrix(self):
929
+ # this test case uncovered a bug which has since been fixed
930
+ A = np.array([
931
+ [1.50591997, 1.93537998],
932
+ [0.41203263, 0.23443516],
933
+ ], dtype=float)
934
+ E = np.array([
935
+ [1.87864034, 2.07055038],
936
+ [1.34102727, 0.67341123],
937
+ ], dtype=float)
938
+ scipy.linalg.norm(A, 1)
939
+ sps_expm, sps_frechet = expm_frechet(
940
+ A, E, method='SPS')
941
+ blockEnlarge_expm, blockEnlarge_frechet = expm_frechet(
942
+ A, E, method='blockEnlarge')
943
+ assert_allclose(sps_expm, blockEnlarge_expm)
944
+ assert_allclose(sps_frechet, blockEnlarge_frechet)
945
+
946
+ @pytest.mark.slow
947
+ @pytest.mark.skip(reason='this test is deliberately slow')
948
+ def test_medium_matrix(self):
949
+ # profile this to see the speed difference
950
+ n = 1000
951
+ A = np.random.exponential(size=(n, n))
952
+ E = np.random.exponential(size=(n, n))
953
+ sps_expm, sps_frechet = expm_frechet(
954
+ A, E, method='SPS')
955
+ blockEnlarge_expm, blockEnlarge_frechet = expm_frechet(
956
+ A, E, method='blockEnlarge')
957
+ assert_allclose(sps_expm, blockEnlarge_expm)
958
+ assert_allclose(sps_frechet, blockEnlarge_frechet)
959
+
960
+
961
+ def _help_expm_cond_search(A, A_norm, X, X_norm, eps, p):
962
+ p = np.reshape(p, A.shape)
963
+ p_norm = norm(p)
964
+ perturbation = eps * p * (A_norm / p_norm)
965
+ X_prime = expm(A + perturbation)
966
+ scaled_relative_error = norm(X_prime - X) / (X_norm * eps)
967
+ return -scaled_relative_error
968
+
969
+
970
+ def _normalized_like(A, B):
971
+ return A * (scipy.linalg.norm(B) / scipy.linalg.norm(A))
972
+
973
+
974
+ def _relative_error(f, A, perturbation):
975
+ X = f(A)
976
+ X_prime = f(A + perturbation)
977
+ return norm(X_prime - X) / norm(X)
978
+
979
+
980
+ class TestExpmConditionNumber:
981
+ def test_expm_cond_smoke(self):
982
+ np.random.seed(1234)
983
+ for n in range(1, 4):
984
+ A = np.random.randn(n, n)
985
+ kappa = expm_cond(A)
986
+ assert_array_less(0, kappa)
987
+
988
+ def test_expm_bad_condition_number(self):
989
+ A = np.array([
990
+ [-1.128679820, 9.614183771e4, -4.524855739e9, 2.924969411e14],
991
+ [0, -1.201010529, 9.634696872e4, -4.681048289e9],
992
+ [0, 0, -1.132893222, 9.532491830e4],
993
+ [0, 0, 0, -1.179475332],
994
+ ])
995
+ kappa = expm_cond(A)
996
+ assert_array_less(1e36, kappa)
997
+
998
+ def test_univariate(self):
999
+ np.random.seed(12345)
1000
+ for x in np.linspace(-5, 5, num=11):
1001
+ A = np.array([[x]])
1002
+ assert_allclose(expm_cond(A), abs(x))
1003
+ for x in np.logspace(-2, 2, num=11):
1004
+ A = np.array([[x]])
1005
+ assert_allclose(expm_cond(A), abs(x))
1006
+ for i in range(10):
1007
+ A = np.random.randn(1, 1)
1008
+ assert_allclose(expm_cond(A), np.absolute(A)[0, 0])
1009
+
1010
+ @pytest.mark.slow
1011
+ def test_expm_cond_fuzz(self):
1012
+ rng = np.random.RandomState(12345)
1013
+ eps = 1e-5
1014
+ nsamples = 10
1015
+ for i in range(nsamples):
1016
+ n = rng.randint(2, 5)
1017
+ A = rng.randn(n, n)
1018
+ A_norm = scipy.linalg.norm(A)
1019
+ X = expm(A)
1020
+ X_norm = scipy.linalg.norm(X)
1021
+ kappa = expm_cond(A)
1022
+
1023
+ # Look for the small perturbation that gives the greatest
1024
+ # relative error.
1025
+ f = functools.partial(_help_expm_cond_search,
1026
+ A, A_norm, X, X_norm, eps)
1027
+ guess = np.ones(n*n)
1028
+ out = minimize(f, guess, method='L-BFGS-B')
1029
+ xopt = out.x
1030
+ yopt = f(xopt)
1031
+ p_best = eps * _normalized_like(np.reshape(xopt, A.shape), A)
1032
+ p_best_relerr = _relative_error(expm, A, p_best)
1033
+ assert_allclose(p_best_relerr, -yopt * eps)
1034
+
1035
+ # Check that the identified perturbation indeed gives greater
1036
+ # relative error than random perturbations with similar norms.
1037
+ for j in range(5):
1038
+ p_rand = eps * _normalized_like(rng.randn(*A.shape), A)
1039
+ assert_allclose(norm(p_best), norm(p_rand))
1040
+ p_rand_relerr = _relative_error(expm, A, p_rand)
1041
+ assert_array_less(p_rand_relerr, p_best_relerr)
1042
+
1043
+ # The greatest relative error should not be much greater than
1044
+ # eps times the condition number kappa.
1045
+ # In the limit as eps approaches zero it should never be greater.
1046
+ assert_array_less(p_best_relerr, (1 + 2*eps) * eps * kappa)
1047
+
1048
+
1049
+ class TestKhatriRao:
1050
+
1051
+ def test_basic(self):
1052
+ a = khatri_rao(array([[1, 2], [3, 4]]),
1053
+ array([[5, 6], [7, 8]]))
1054
+
1055
+ assert_array_equal(a, array([[5, 12],
1056
+ [7, 16],
1057
+ [15, 24],
1058
+ [21, 32]]))
1059
+
1060
+ b = khatri_rao(np.empty([2, 2]), np.empty([2, 2]))
1061
+ assert_array_equal(b.shape, (4, 2))
1062
+
1063
+ def test_number_of_columns_equality(self):
1064
+ with pytest.raises(ValueError):
1065
+ a = array([[1, 2, 3],
1066
+ [4, 5, 6]])
1067
+ b = array([[1, 2],
1068
+ [3, 4]])
1069
+ khatri_rao(a, b)
1070
+
1071
+ def test_to_assure_2d_array(self):
1072
+ with pytest.raises(ValueError):
1073
+ # both arrays are 1-D
1074
+ a = array([1, 2, 3])
1075
+ b = array([4, 5, 6])
1076
+ khatri_rao(a, b)
1077
+
1078
+ with pytest.raises(ValueError):
1079
+ # first array is 1-D
1080
+ a = array([1, 2, 3])
1081
+ b = array([
1082
+ [1, 2, 3],
1083
+ [4, 5, 6]
1084
+ ])
1085
+ khatri_rao(a, b)
1086
+
1087
+ with pytest.raises(ValueError):
1088
+ # second array is 1-D
1089
+ a = array([
1090
+ [1, 2, 3],
1091
+ [7, 8, 9]
1092
+ ])
1093
+ b = array([4, 5, 6])
1094
+ khatri_rao(a, b)
1095
+
1096
+ def test_equality_of_two_equations(self):
1097
+ a = array([[1, 2], [3, 4]])
1098
+ b = array([[5, 6], [7, 8]])
1099
+
1100
+ res1 = khatri_rao(a, b)
1101
+ res2 = np.vstack([np.kron(a[:, k], b[:, k])
1102
+ for k in range(b.shape[1])]).T
1103
+
1104
+ assert_array_equal(res1, res2)
1105
+
1106
+ def test_empty(self):
1107
+ a = np.empty((0, 2))
1108
+ b = np.empty((3, 2))
1109
+ res = khatri_rao(a, b)
1110
+ assert_allclose(res, np.empty((0, 2)))
1111
+
1112
+ a = np.empty((3, 0))
1113
+ b = np.empty((5, 0))
1114
+ res = khatri_rao(a, b)
1115
+ assert_allclose(res, np.empty((15, 0)))
1116
+
1117
+ @pytest.mark.parametrize('func',
1118
+ [logm, sqrtm, signm])
1119
+ def test_disp_dep(func):
1120
+ with pytest.deprecated_call():
1121
+ func(np.eye(2), disp=False)
1122
+
1123
+ def test_blocksize_dep():
1124
+ with pytest.deprecated_call():
1125
+ sqrtm(np.eye(2), blocksize=10)