scipy 1.16.2__cp314-cp314t-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp314t-win_arm64.lib +0 -0
- scipy/_cyutility.cp314t-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp314t-win_arm64.lib +0 -0
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- scipy/_lib/_test_deprecation_call.cp314t-win_arm64.lib +0 -0
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- scipy/_lib/_test_deprecation_def.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp314t-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
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- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp314t-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp314t-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp314t-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp314t-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp314t-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
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- scipy/fft/_realtransforms_backend.py +63 -0
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- scipy/fft/tests/test_helper.py +558 -0
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- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
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- scipy/integrate/__init__.py +122 -0
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- scipy/integrate/_ivp/__init__.py +8 -0
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- scipy/integrate/_lebedev.py +5450 -0
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- scipy/integrate/_ode.py +1395 -0
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- scipy/integrate/tests/test_tanhsinh.py +1171 -0
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"""Cholesky decomposition functions."""
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import numpy as np
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from numpy import asarray_chkfinite, asarray, atleast_2d, empty_like
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# Local imports
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from scipy._lib._util import _apply_over_batch
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from ._misc import LinAlgError, _datacopied
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from .lapack import get_lapack_funcs
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__all__ = ['cholesky', 'cho_factor', 'cho_solve', 'cholesky_banded',
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'cho_solve_banded']
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def _cholesky(a, lower=False, overwrite_a=False, clean=True,
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check_finite=True):
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"""Common code for cholesky() and cho_factor()."""
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a1 = asarray_chkfinite(a) if check_finite else asarray(a)
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a1 = atleast_2d(a1)
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# Dimension check
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if a1.ndim != 2:
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raise ValueError(f'Input array needs to be 2D but received a {a1.ndim}d-array.')
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# Squareness check
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if a1.shape[0] != a1.shape[1]:
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raise ValueError('Input array is expected to be square but has '
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f'the shape: {a1.shape}.')
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# Quick return for square empty array
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if a1.size == 0:
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dt = cholesky(np.eye(1, dtype=a1.dtype)).dtype
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return empty_like(a1, dtype=dt), lower
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overwrite_a = overwrite_a or _datacopied(a1, a)
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potrf, = get_lapack_funcs(('potrf',), (a1,))
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c, info = potrf(a1, lower=lower, overwrite_a=overwrite_a, clean=clean)
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if info > 0:
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raise LinAlgError(
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f"{info}-th leading minor of the array is not positive definite"
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)
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if info < 0:
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raise ValueError(
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f'LAPACK reported an illegal value in {-info}-th argument '
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f'on entry to "POTRF".'
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)
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return c, lower
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@_apply_over_batch(('a', 2))
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def cholesky(a, lower=False, overwrite_a=False, check_finite=True):
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"""
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Compute the Cholesky decomposition of a matrix.
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Returns the Cholesky decomposition, :math:`A = L L^*` or
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:math:`A = U^* U` of a Hermitian positive-definite matrix A.
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Parameters
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----------
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a : (M, M) array_like
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Matrix to be decomposed
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lower : bool, optional
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Whether to compute the upper- or lower-triangular Cholesky
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factorization. During decomposition, only the selected half of the
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matrix is referenced. Default is upper-triangular.
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overwrite_a : bool, optional
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Whether to overwrite data in `a` (may improve performance).
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check_finite : bool, optional
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Whether to check that the entire input matrix contains only finite numbers.
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Disabling may give a performance gain, but may result in problems
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(crashes, non-termination) if the inputs do contain infinities or NaNs.
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Returns
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-------
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c : (M, M) ndarray
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Upper- or lower-triangular Cholesky factor of `a`.
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Raises
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------
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LinAlgError : if decomposition fails.
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Notes
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-----
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During the finiteness check (if selected), the entire matrix `a` is
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checked. During decomposition, `a` is assumed to be symmetric or Hermitian
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(as applicable), and only the half selected by option `lower` is referenced.
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Consequently, if `a` is asymmetric/non-Hermitian, `cholesky` may still
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succeed if the symmetric/Hermitian matrix represented by the selected half
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is positive definite, yet it may fail if an element in the other half is
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non-finite.
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Examples
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--------
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>>> import numpy as np
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>>> from scipy.linalg import cholesky
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>>> a = np.array([[1,-2j],[2j,5]])
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>>> L = cholesky(a, lower=True)
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>>> L
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array([[ 1.+0.j, 0.+0.j],
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[ 0.+2.j, 1.+0.j]])
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>>> L @ L.T.conj()
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array([[ 1.+0.j, 0.-2.j],
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[ 0.+2.j, 5.+0.j]])
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"""
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c, lower = _cholesky(a, lower=lower, overwrite_a=overwrite_a, clean=True,
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check_finite=check_finite)
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return c
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@_apply_over_batch(("a", 2))
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def cho_factor(a, lower=False, overwrite_a=False, check_finite=True):
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"""
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Compute the Cholesky decomposition of a matrix, to use in cho_solve
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Returns a matrix containing the Cholesky decomposition,
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``A = L L*`` or ``A = U* U`` of a Hermitian positive-definite matrix `a`.
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The return value can be directly used as the first parameter to cho_solve.
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.. warning::
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The returned matrix also contains random data in the entries not
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used by the Cholesky decomposition. If you need to zero these
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entries, use the function `cholesky` instead.
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Parameters
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----------
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a : (M, M) array_like
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Matrix to be decomposed
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lower : bool, optional
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Whether to compute the upper or lower triangular Cholesky factorization.
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During decomposition, only the selected half of the matrix is referenced.
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(Default: upper-triangular)
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overwrite_a : bool, optional
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Whether to overwrite data in a (may improve performance)
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check_finite : bool, optional
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Whether to check that the entire input matrix contains only finite numbers.
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Disabling may give a performance gain, but may result in problems
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(crashes, non-termination) if the inputs do contain infinities or NaNs.
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Returns
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-------
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c : (M, M) ndarray
|
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+
Matrix whose upper or lower triangle contains the Cholesky factor
|
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+
of `a`. Other parts of the matrix contain random data.
|
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+
lower : bool
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+
Flag indicating whether the factor is in the lower or upper triangle
|
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+
|
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|
+
Raises
|
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+
------
|
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+
LinAlgError
|
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+
Raised if decomposition fails.
|
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+
|
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|
+
See Also
|
154
|
+
--------
|
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+
cho_solve : Solve a linear set equations using the Cholesky factorization
|
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+
of a matrix.
|
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+
|
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+
Notes
|
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+
-----
|
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|
+
During the finiteness check (if selected), the entire matrix `a` is
|
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+
checked. During decomposition, `a` is assumed to be symmetric or Hermitian
|
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+
(as applicable), and only the half selected by option `lower` is referenced.
|
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+
Consequently, if `a` is asymmetric/non-Hermitian, `cholesky` may still
|
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+
succeed if the symmetric/Hermitian matrix represented by the selected half
|
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+
is positive definite, yet it may fail if an element in the other half is
|
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+
non-finite.
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+
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+
Examples
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+
--------
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+
>>> import numpy as np
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+
>>> from scipy.linalg import cho_factor
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+
>>> A = np.array([[9, 3, 1, 5], [3, 7, 5, 1], [1, 5, 9, 2], [5, 1, 2, 6]])
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+
>>> c, low = cho_factor(A)
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+
>>> c
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+
array([[3. , 1. , 0.33333333, 1.66666667],
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+
[3. , 2.44948974, 1.90515869, -0.27216553],
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+
[1. , 5. , 2.29330749, 0.8559528 ],
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+
[5. , 1. , 2. , 1.55418563]])
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+
>>> np.allclose(np.triu(c).T @ np. triu(c) - A, np.zeros((4, 4)))
|
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+
True
|
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+
|
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+
"""
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+
c, lower = _cholesky(a, lower=lower, overwrite_a=overwrite_a, clean=False,
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+
check_finite=check_finite)
|
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+
return c, lower
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+
|
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+
|
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+
def cho_solve(c_and_lower, b, overwrite_b=False, check_finite=True):
|
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+
"""Solve the linear equations A x = b, given the Cholesky factorization of A.
|
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+
|
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|
+
Parameters
|
192
|
+
----------
|
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|
+
(c, lower) : tuple, (array, bool)
|
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|
+
Cholesky factorization of a, as given by cho_factor
|
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|
+
b : array
|
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|
+
Right-hand side
|
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|
+
overwrite_b : bool, optional
|
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|
+
Whether to overwrite data in b (may improve performance)
|
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|
+
check_finite : bool, optional
|
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|
+
Whether to check that the input matrices contain only finite numbers.
|
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|
+
Disabling may give a performance gain, but may result in problems
|
202
|
+
(crashes, non-termination) if the inputs do contain infinities or NaNs.
|
203
|
+
|
204
|
+
Returns
|
205
|
+
-------
|
206
|
+
x : array
|
207
|
+
The solution to the system A x = b
|
208
|
+
|
209
|
+
See Also
|
210
|
+
--------
|
211
|
+
cho_factor : Cholesky factorization of a matrix
|
212
|
+
|
213
|
+
Examples
|
214
|
+
--------
|
215
|
+
>>> import numpy as np
|
216
|
+
>>> from scipy.linalg import cho_factor, cho_solve
|
217
|
+
>>> A = np.array([[9, 3, 1, 5], [3, 7, 5, 1], [1, 5, 9, 2], [5, 1, 2, 6]])
|
218
|
+
>>> c, low = cho_factor(A)
|
219
|
+
>>> x = cho_solve((c, low), [1, 1, 1, 1])
|
220
|
+
>>> np.allclose(A @ x - [1, 1, 1, 1], np.zeros(4))
|
221
|
+
True
|
222
|
+
|
223
|
+
"""
|
224
|
+
c, lower = c_and_lower
|
225
|
+
return _cho_solve(c, b, lower, overwrite_b=overwrite_b, check_finite=check_finite)
|
226
|
+
|
227
|
+
|
228
|
+
@_apply_over_batch(('c', 2), ('b', '1|2'))
|
229
|
+
def _cho_solve(c, b, lower, overwrite_b, check_finite):
|
230
|
+
if check_finite:
|
231
|
+
b1 = asarray_chkfinite(b)
|
232
|
+
c = asarray_chkfinite(c)
|
233
|
+
else:
|
234
|
+
b1 = asarray(b)
|
235
|
+
c = asarray(c)
|
236
|
+
|
237
|
+
if c.ndim != 2 or c.shape[0] != c.shape[1]:
|
238
|
+
raise ValueError("The factored matrix c is not square.")
|
239
|
+
if c.shape[1] != b1.shape[0]:
|
240
|
+
raise ValueError(f"incompatible dimensions ({c.shape} and {b1.shape})")
|
241
|
+
|
242
|
+
# accommodate empty arrays
|
243
|
+
if b1.size == 0:
|
244
|
+
dt = cho_solve((np.eye(2, dtype=b1.dtype), True),
|
245
|
+
np.ones(2, dtype=c.dtype)).dtype
|
246
|
+
return empty_like(b1, dtype=dt)
|
247
|
+
|
248
|
+
overwrite_b = overwrite_b or _datacopied(b1, b)
|
249
|
+
|
250
|
+
potrs, = get_lapack_funcs(('potrs',), (c, b1))
|
251
|
+
x, info = potrs(c, b1, lower=lower, overwrite_b=overwrite_b)
|
252
|
+
if info != 0:
|
253
|
+
raise ValueError(f'illegal value in {-info}th argument of internal potrs')
|
254
|
+
return x
|
255
|
+
|
256
|
+
|
257
|
+
@_apply_over_batch(("ab", 2))
|
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|
+
def cholesky_banded(ab, overwrite_ab=False, lower=False, check_finite=True):
|
259
|
+
"""
|
260
|
+
Cholesky decompose a banded Hermitian positive-definite matrix
|
261
|
+
|
262
|
+
The matrix a is stored in ab either in lower-diagonal or upper-
|
263
|
+
diagonal ordered form::
|
264
|
+
|
265
|
+
ab[u + i - j, j] == a[i,j] (if upper form; i <= j)
|
266
|
+
ab[ i - j, j] == a[i,j] (if lower form; i >= j)
|
267
|
+
|
268
|
+
Example of ab (shape of a is (6,6), u=2)::
|
269
|
+
|
270
|
+
upper form:
|
271
|
+
* * a02 a13 a24 a35
|
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|
+
* a01 a12 a23 a34 a45
|
273
|
+
a00 a11 a22 a33 a44 a55
|
274
|
+
|
275
|
+
lower form:
|
276
|
+
a00 a11 a22 a33 a44 a55
|
277
|
+
a10 a21 a32 a43 a54 *
|
278
|
+
a20 a31 a42 a53 * *
|
279
|
+
|
280
|
+
Parameters
|
281
|
+
----------
|
282
|
+
ab : (u + 1, M) array_like
|
283
|
+
Banded matrix
|
284
|
+
overwrite_ab : bool, optional
|
285
|
+
Discard data in ab (may enhance performance)
|
286
|
+
lower : bool, optional
|
287
|
+
Is the matrix in the lower form. (Default is upper form)
|
288
|
+
check_finite : bool, optional
|
289
|
+
Whether to check that the input matrix contains only finite numbers.
|
290
|
+
Disabling may give a performance gain, but may result in problems
|
291
|
+
(crashes, non-termination) if the inputs do contain infinities or NaNs.
|
292
|
+
|
293
|
+
Returns
|
294
|
+
-------
|
295
|
+
c : (u + 1, M) ndarray
|
296
|
+
Cholesky factorization of a, in the same banded format as ab
|
297
|
+
|
298
|
+
See Also
|
299
|
+
--------
|
300
|
+
cho_solve_banded :
|
301
|
+
Solve a linear set equations, given the Cholesky factorization
|
302
|
+
of a banded Hermitian.
|
303
|
+
|
304
|
+
Examples
|
305
|
+
--------
|
306
|
+
>>> import numpy as np
|
307
|
+
>>> from scipy.linalg import cholesky_banded
|
308
|
+
>>> from numpy import allclose, zeros, diag
|
309
|
+
>>> Ab = np.array([[0, 0, 1j, 2, 3j], [0, -1, -2, 3, 4], [9, 8, 7, 6, 9]])
|
310
|
+
>>> A = np.diag(Ab[0,2:], k=2) + np.diag(Ab[1,1:], k=1)
|
311
|
+
>>> A = A + A.conj().T + np.diag(Ab[2, :])
|
312
|
+
>>> c = cholesky_banded(Ab)
|
313
|
+
>>> C = np.diag(c[0, 2:], k=2) + np.diag(c[1, 1:], k=1) + np.diag(c[2, :])
|
314
|
+
>>> np.allclose(C.conj().T @ C - A, np.zeros((5, 5)))
|
315
|
+
True
|
316
|
+
|
317
|
+
"""
|
318
|
+
if check_finite:
|
319
|
+
ab = asarray_chkfinite(ab)
|
320
|
+
else:
|
321
|
+
ab = asarray(ab)
|
322
|
+
|
323
|
+
# accommodate square empty matrices
|
324
|
+
if ab.size == 0:
|
325
|
+
dt = cholesky_banded(np.array([[0, 0], [1, 1]], dtype=ab.dtype)).dtype
|
326
|
+
return empty_like(ab, dtype=dt)
|
327
|
+
|
328
|
+
pbtrf, = get_lapack_funcs(('pbtrf',), (ab,))
|
329
|
+
c, info = pbtrf(ab, lower=lower, overwrite_ab=overwrite_ab)
|
330
|
+
if info > 0:
|
331
|
+
raise LinAlgError(f"{info}-th leading minor not positive definite")
|
332
|
+
if info < 0:
|
333
|
+
raise ValueError(f'illegal value in {info}-th argument of internal pbtrf')
|
334
|
+
return c
|
335
|
+
|
336
|
+
|
337
|
+
def cho_solve_banded(cb_and_lower, b, overwrite_b=False, check_finite=True):
|
338
|
+
"""
|
339
|
+
Solve the linear equations ``A x = b``, given the Cholesky factorization of
|
340
|
+
the banded Hermitian ``A``.
|
341
|
+
|
342
|
+
Parameters
|
343
|
+
----------
|
344
|
+
(cb, lower) : tuple, (ndarray, bool)
|
345
|
+
`cb` is the Cholesky factorization of A, as given by cholesky_banded.
|
346
|
+
`lower` must be the same value that was given to cholesky_banded.
|
347
|
+
b : array_like
|
348
|
+
Right-hand side
|
349
|
+
overwrite_b : bool, optional
|
350
|
+
If True, the function will overwrite the values in `b`.
|
351
|
+
check_finite : bool, optional
|
352
|
+
Whether to check that the input matrices contain only finite numbers.
|
353
|
+
Disabling may give a performance gain, but may result in problems
|
354
|
+
(crashes, non-termination) if the inputs do contain infinities or NaNs.
|
355
|
+
|
356
|
+
Returns
|
357
|
+
-------
|
358
|
+
x : array
|
359
|
+
The solution to the system A x = b
|
360
|
+
|
361
|
+
See Also
|
362
|
+
--------
|
363
|
+
cholesky_banded : Cholesky factorization of a banded matrix
|
364
|
+
|
365
|
+
Notes
|
366
|
+
-----
|
367
|
+
|
368
|
+
.. versionadded:: 0.8.0
|
369
|
+
|
370
|
+
Examples
|
371
|
+
--------
|
372
|
+
>>> import numpy as np
|
373
|
+
>>> from scipy.linalg import cholesky_banded, cho_solve_banded
|
374
|
+
>>> Ab = np.array([[0, 0, 1j, 2, 3j], [0, -1, -2, 3, 4], [9, 8, 7, 6, 9]])
|
375
|
+
>>> A = np.diag(Ab[0,2:], k=2) + np.diag(Ab[1,1:], k=1)
|
376
|
+
>>> A = A + A.conj().T + np.diag(Ab[2, :])
|
377
|
+
>>> c = cholesky_banded(Ab)
|
378
|
+
>>> x = cho_solve_banded((c, False), np.ones(5))
|
379
|
+
>>> np.allclose(A @ x - np.ones(5), np.zeros(5))
|
380
|
+
True
|
381
|
+
|
382
|
+
"""
|
383
|
+
(cb, lower) = cb_and_lower
|
384
|
+
return _cho_solve_banded(cb, b, lower, overwrite_b=overwrite_b,
|
385
|
+
check_finite=check_finite)
|
386
|
+
|
387
|
+
|
388
|
+
@_apply_over_batch(('cb', 2), ('b', '1|2'))
|
389
|
+
def _cho_solve_banded(cb, b, lower, overwrite_b, check_finite):
|
390
|
+
if check_finite:
|
391
|
+
cb = asarray_chkfinite(cb)
|
392
|
+
b = asarray_chkfinite(b)
|
393
|
+
else:
|
394
|
+
cb = asarray(cb)
|
395
|
+
b = asarray(b)
|
396
|
+
|
397
|
+
# Validate shapes.
|
398
|
+
if cb.shape[-1] != b.shape[0]:
|
399
|
+
raise ValueError("shapes of cb and b are not compatible.")
|
400
|
+
|
401
|
+
# accommodate empty arrays
|
402
|
+
if b.size == 0:
|
403
|
+
m = cholesky_banded(np.array([[0, 0], [1, 1]], dtype=cb.dtype))
|
404
|
+
dt = cho_solve_banded((m, True), np.ones(2, dtype=b.dtype)).dtype
|
405
|
+
return empty_like(b, dtype=dt)
|
406
|
+
|
407
|
+
pbtrs, = get_lapack_funcs(('pbtrs',), (cb, b))
|
408
|
+
x, info = pbtrs(cb, b, lower=lower, overwrite_b=overwrite_b)
|
409
|
+
if info > 0:
|
410
|
+
raise LinAlgError(f"{info}th leading minor not positive definite")
|
411
|
+
if info < 0:
|
412
|
+
raise ValueError(f'illegal value in {-info}th argument of internal pbtrs')
|
413
|
+
return x
|
@@ -0,0 +1,236 @@
|
|
1
|
+
from collections.abc import Iterable
|
2
|
+
import numpy as np
|
3
|
+
|
4
|
+
from scipy._lib._util import _asarray_validated, _apply_over_batch
|
5
|
+
from scipy.linalg import block_diag, LinAlgError
|
6
|
+
from .lapack import _compute_lwork, get_lapack_funcs
|
7
|
+
|
8
|
+
__all__ = ['cossin']
|
9
|
+
|
10
|
+
|
11
|
+
def cossin(X, p=None, q=None, separate=False,
|
12
|
+
swap_sign=False, compute_u=True, compute_vh=True):
|
13
|
+
"""
|
14
|
+
Compute the cosine-sine (CS) decomposition of an orthogonal/unitary matrix.
|
15
|
+
|
16
|
+
X is an ``(m, m)`` orthogonal/unitary matrix, partitioned as the following
|
17
|
+
where upper left block has the shape of ``(p, q)``::
|
18
|
+
|
19
|
+
┌ ┐
|
20
|
+
│ I 0 0 │ 0 0 0 │
|
21
|
+
┌ ┐ ┌ ┐│ 0 C 0 │ 0 -S 0 │┌ ┐*
|
22
|
+
│ X11 │ X12 │ │ U1 │ ││ 0 0 0 │ 0 0 -I ││ V1 │ │
|
23
|
+
│ ────┼──── │ = │────┼────││─────────┼─────────││────┼────│
|
24
|
+
│ X21 │ X22 │ │ │ U2 ││ 0 0 0 │ I 0 0 ││ │ V2 │
|
25
|
+
└ ┘ └ ┘│ 0 S 0 │ 0 C 0 │└ ┘
|
26
|
+
│ 0 0 I │ 0 0 0 │
|
27
|
+
└ ┘
|
28
|
+
|
29
|
+
``U1``, ``U2``, ``V1``, ``V2`` are square orthogonal/unitary matrices of
|
30
|
+
dimensions ``(p,p)``, ``(m-p,m-p)``, ``(q,q)``, and ``(m-q,m-q)``
|
31
|
+
respectively, and ``C`` and ``S`` are ``(r, r)`` nonnegative diagonal
|
32
|
+
matrices satisfying ``C^2 + S^2 = I`` where ``r = min(p, m-p, q, m-q)``.
|
33
|
+
|
34
|
+
Moreover, the rank of the identity matrices are ``min(p, q) - r``,
|
35
|
+
``min(p, m - q) - r``, ``min(m - p, q) - r``, and ``min(m - p, m - q) - r``
|
36
|
+
respectively.
|
37
|
+
|
38
|
+
X can be supplied either by itself and block specifications p, q or its
|
39
|
+
subblocks in an iterable from which the shapes would be derived. See the
|
40
|
+
examples below.
|
41
|
+
|
42
|
+
Parameters
|
43
|
+
----------
|
44
|
+
X : array_like, iterable
|
45
|
+
complex unitary or real orthogonal matrix to be decomposed, or iterable
|
46
|
+
of subblocks ``X11``, ``X12``, ``X21``, ``X22``, when ``p``, ``q`` are
|
47
|
+
omitted.
|
48
|
+
p : int, optional
|
49
|
+
Number of rows of the upper left block ``X11``, used only when X is
|
50
|
+
given as an array.
|
51
|
+
q : int, optional
|
52
|
+
Number of columns of the upper left block ``X11``, used only when X is
|
53
|
+
given as an array.
|
54
|
+
separate : bool, optional
|
55
|
+
if ``True``, the low level components are returned instead of the
|
56
|
+
matrix factors, i.e. ``(u1,u2)``, ``theta``, ``(v1h,v2h)`` instead of
|
57
|
+
``u``, ``cs``, ``vh``.
|
58
|
+
swap_sign : bool, optional
|
59
|
+
if ``True``, the ``-S``, ``-I`` block will be the bottom left,
|
60
|
+
otherwise (by default) they will be in the upper right block.
|
61
|
+
compute_u : bool, optional
|
62
|
+
if ``False``, ``u`` won't be computed and an empty array is returned.
|
63
|
+
compute_vh : bool, optional
|
64
|
+
if ``False``, ``vh`` won't be computed and an empty array is returned.
|
65
|
+
|
66
|
+
Returns
|
67
|
+
-------
|
68
|
+
u : ndarray
|
69
|
+
When ``compute_u=True``, contains the block diagonal orthogonal/unitary
|
70
|
+
matrix consisting of the blocks ``U1`` (``p`` x ``p``) and ``U2``
|
71
|
+
(``m-p`` x ``m-p``) orthogonal/unitary matrices. If ``separate=True``,
|
72
|
+
this contains the tuple of ``(U1, U2)``.
|
73
|
+
cs : ndarray
|
74
|
+
The cosine-sine factor with the structure described above.
|
75
|
+
If ``separate=True``, this contains the ``theta`` array containing the
|
76
|
+
angles in radians.
|
77
|
+
vh : ndarray
|
78
|
+
When ``compute_vh=True`, contains the block diagonal orthogonal/unitary
|
79
|
+
matrix consisting of the blocks ``V1H`` (``q`` x ``q``) and ``V2H``
|
80
|
+
(``m-q`` x ``m-q``) orthogonal/unitary matrices. If ``separate=True``,
|
81
|
+
this contains the tuple of ``(V1H, V2H)``.
|
82
|
+
|
83
|
+
Notes
|
84
|
+
-----
|
85
|
+
The documentation is written assuming array arguments are of specified
|
86
|
+
"core" shapes. However, array argument(s) of this function may have additional
|
87
|
+
"batch" dimensions prepended to the core shape. In this case, the array is treated
|
88
|
+
as a batch of lower-dimensional slices; see :ref:`linalg_batch` for details.
|
89
|
+
|
90
|
+
References
|
91
|
+
----------
|
92
|
+
.. [1] Brian D. Sutton. Computing the complete CS decomposition. Numer.
|
93
|
+
Algorithms, 50(1):33-65, 2009.
|
94
|
+
|
95
|
+
Examples
|
96
|
+
--------
|
97
|
+
>>> import numpy as np
|
98
|
+
>>> from scipy.linalg import cossin
|
99
|
+
>>> from scipy.stats import unitary_group
|
100
|
+
>>> x = unitary_group.rvs(4)
|
101
|
+
>>> u, cs, vdh = cossin(x, p=2, q=2)
|
102
|
+
>>> np.allclose(x, u @ cs @ vdh)
|
103
|
+
True
|
104
|
+
|
105
|
+
Same can be entered via subblocks without the need of ``p`` and ``q``. Also
|
106
|
+
let's skip the computation of ``u``
|
107
|
+
|
108
|
+
>>> ue, cs, vdh = cossin((x[:2, :2], x[:2, 2:], x[2:, :2], x[2:, 2:]),
|
109
|
+
... compute_u=False)
|
110
|
+
>>> print(ue)
|
111
|
+
[]
|
112
|
+
>>> np.allclose(x, u @ cs @ vdh)
|
113
|
+
True
|
114
|
+
|
115
|
+
"""
|
116
|
+
|
117
|
+
if p or q:
|
118
|
+
p = 1 if p is None else int(p)
|
119
|
+
q = 1 if q is None else int(q)
|
120
|
+
X = _asarray_validated(X, check_finite=True)
|
121
|
+
if not np.equal(*X.shape[-2:]):
|
122
|
+
raise ValueError("Cosine Sine decomposition only supports square"
|
123
|
+
f" matrices, got {X.shape[-2:]}")
|
124
|
+
m = X.shape[-2]
|
125
|
+
if p >= m or p <= 0:
|
126
|
+
raise ValueError(f"invalid p={p}, 0<p<{X.shape[-2]} must hold")
|
127
|
+
if q >= m or q <= 0:
|
128
|
+
raise ValueError(f"invalid q={q}, 0<q<{X.shape[-2]} must hold")
|
129
|
+
|
130
|
+
x11, x12, x21, x22 = (X[..., :p, :q], X[..., :p, q:],
|
131
|
+
X[..., p:, :q], X[..., p:, q:])
|
132
|
+
elif not isinstance(X, Iterable):
|
133
|
+
raise ValueError("When p and q are None, X must be an Iterable"
|
134
|
+
" containing the subblocks of X")
|
135
|
+
else:
|
136
|
+
if len(X) != 4:
|
137
|
+
raise ValueError("When p and q are None, exactly four arrays"
|
138
|
+
f" should be in X, got {len(X)}")
|
139
|
+
x11, x12, x21, x22 = (np.atleast_2d(x) for x in X)
|
140
|
+
|
141
|
+
return _cossin(x11, x12, x21, x22, separate=separate, swap_sign=swap_sign,
|
142
|
+
compute_u=compute_u, compute_vh=compute_vh)
|
143
|
+
|
144
|
+
|
145
|
+
@_apply_over_batch(('x11', 2), ('x12', 2), ('x21', 2), ('x22', 2))
|
146
|
+
def _cossin(x11, x12, x21, x22, separate, swap_sign, compute_u, compute_vh):
|
147
|
+
|
148
|
+
for name, block in zip(["x11", "x12", "x21", "x22"],
|
149
|
+
[x11, x12, x21, x22]):
|
150
|
+
if block.shape[1] == 0:
|
151
|
+
raise ValueError(f"{name} can't be empty")
|
152
|
+
p, q = x11.shape
|
153
|
+
mmp, mmq = x22.shape
|
154
|
+
|
155
|
+
if x12.shape != (p, mmq):
|
156
|
+
raise ValueError(f"Invalid x12 dimensions: desired {(p, mmq)}, "
|
157
|
+
f"got {x12.shape}")
|
158
|
+
|
159
|
+
if x21.shape != (mmp, q):
|
160
|
+
raise ValueError(f"Invalid x21 dimensions: desired {(mmp, q)}, "
|
161
|
+
f"got {x21.shape}")
|
162
|
+
|
163
|
+
if p + mmp != q + mmq:
|
164
|
+
raise ValueError("The subblocks have compatible sizes but "
|
165
|
+
"don't form a square array (instead they form a"
|
166
|
+
f" {p + mmp}x{q + mmq} array). This might be "
|
167
|
+
"due to missing p, q arguments.")
|
168
|
+
|
169
|
+
m = p + mmp
|
170
|
+
|
171
|
+
cplx = any([np.iscomplexobj(x) for x in [x11, x12, x21, x22]])
|
172
|
+
driver = "uncsd" if cplx else "orcsd"
|
173
|
+
csd, csd_lwork = get_lapack_funcs([driver, driver + "_lwork"],
|
174
|
+
[x11, x12, x21, x22])
|
175
|
+
lwork = _compute_lwork(csd_lwork, m=m, p=p, q=q)
|
176
|
+
lwork_args = ({'lwork': lwork[0], 'lrwork': lwork[1]} if cplx else
|
177
|
+
{'lwork': lwork})
|
178
|
+
*_, theta, u1, u2, v1h, v2h, info = csd(x11=x11, x12=x12, x21=x21, x22=x22,
|
179
|
+
compute_u1=compute_u,
|
180
|
+
compute_u2=compute_u,
|
181
|
+
compute_v1t=compute_vh,
|
182
|
+
compute_v2t=compute_vh,
|
183
|
+
trans=False, signs=swap_sign,
|
184
|
+
**lwork_args)
|
185
|
+
|
186
|
+
method_name = csd.typecode + driver
|
187
|
+
if info < 0:
|
188
|
+
raise ValueError(f'illegal value in argument {-info} '
|
189
|
+
f'of internal {method_name}')
|
190
|
+
if info > 0:
|
191
|
+
raise LinAlgError(f"{method_name} did not converge: {info}")
|
192
|
+
|
193
|
+
if separate:
|
194
|
+
return (u1, u2), theta, (v1h, v2h)
|
195
|
+
|
196
|
+
U = block_diag(u1, u2)
|
197
|
+
VDH = block_diag(v1h, v2h)
|
198
|
+
|
199
|
+
# Construct the middle factor CS
|
200
|
+
c = np.diag(np.cos(theta))
|
201
|
+
s = np.diag(np.sin(theta))
|
202
|
+
r = min(p, q, m - p, m - q)
|
203
|
+
n11 = min(p, q) - r
|
204
|
+
n12 = min(p, m - q) - r
|
205
|
+
n21 = min(m - p, q) - r
|
206
|
+
n22 = min(m - p, m - q) - r
|
207
|
+
Id = np.eye(np.max([n11, n12, n21, n22, r]), dtype=theta.dtype)
|
208
|
+
CS = np.zeros((m, m), dtype=theta.dtype)
|
209
|
+
|
210
|
+
CS[:n11, :n11] = Id[:n11, :n11]
|
211
|
+
|
212
|
+
xs = n11 + r
|
213
|
+
xe = n11 + r + n12
|
214
|
+
ys = n11 + n21 + n22 + 2 * r
|
215
|
+
ye = n11 + n21 + n22 + 2 * r + n12
|
216
|
+
CS[xs: xe, ys:ye] = Id[:n12, :n12] if swap_sign else -Id[:n12, :n12]
|
217
|
+
|
218
|
+
xs = p + n22 + r
|
219
|
+
xe = p + n22 + r + + n21
|
220
|
+
ys = n11 + r
|
221
|
+
ye = n11 + r + n21
|
222
|
+
CS[xs:xe, ys:ye] = -Id[:n21, :n21] if swap_sign else Id[:n21, :n21]
|
223
|
+
|
224
|
+
CS[p:p + n22, q:q + n22] = Id[:n22, :n22]
|
225
|
+
CS[n11:n11 + r, n11:n11 + r] = c
|
226
|
+
CS[p + n22:p + n22 + r, n11 + r + n21 + n22:2 * r + n11 + n21 + n22] = c
|
227
|
+
|
228
|
+
xs = n11
|
229
|
+
xe = n11 + r
|
230
|
+
ys = n11 + n21 + n22 + r
|
231
|
+
ye = n11 + n21 + n22 + 2 * r
|
232
|
+
CS[xs:xe, ys:ye] = s if swap_sign else -s
|
233
|
+
|
234
|
+
CS[p + n22:p + n22 + r, n11:n11 + r] = -s if swap_sign else s
|
235
|
+
|
236
|
+
return U, CS, VDH
|
Binary file
|
Binary file
|