scipy 1.16.2__cp314-cp314-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp314-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp314-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp314-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp314-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp314-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp314-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp314-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp314-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp314-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp314-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp314-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp314-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp314-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp314-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp314-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp314-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp314-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp314-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp314-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp314-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp314-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp314-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp314-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp314-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp314-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp314-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp314-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp314-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp314-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp314-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp314-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp314-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp314-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp314-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp314-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp314-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp314-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp314-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp314-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp314-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp314-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp314-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp314-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp314-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp314-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp314-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp314-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp314-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp314-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp314-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp314-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp314-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp314-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp314-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
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  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,1492 @@
1
+ import os
2
+ from collections import Counter
3
+ from itertools import combinations, product
4
+
5
+ import pytest
6
+ import numpy as np
7
+ from numpy.testing import (assert_allclose, assert_equal, assert_array_equal,
8
+ assert_array_less)
9
+
10
+ from scipy.spatial import distance
11
+ from scipy.stats import shapiro
12
+ from scipy.stats._sobol import _test_find_index
13
+ from scipy.stats import qmc
14
+ from scipy.stats._qmc import (
15
+ van_der_corput, n_primes, primes_from_2_to,
16
+ update_discrepancy, QMCEngine, _l1_norm,
17
+ _perturb_discrepancy, _lloyd_centroidal_voronoi_tessellation
18
+ )
19
+
20
+
21
+ class TestUtils:
22
+ def test_scale(self):
23
+ # 1d scalar
24
+ space = [[0], [1], [0.5]]
25
+ out = [[-2], [6], [2]]
26
+ scaled_space = qmc.scale(space, l_bounds=-2, u_bounds=6)
27
+
28
+ assert_allclose(scaled_space, out)
29
+
30
+ # 2d space
31
+ space = [[0, 0], [1, 1], [0.5, 0.5]]
32
+ bounds = np.array([[-2, 0], [6, 5]])
33
+ out = [[-2, 0], [6, 5], [2, 2.5]]
34
+
35
+ scaled_space = qmc.scale(space, l_bounds=bounds[0], u_bounds=bounds[1])
36
+
37
+ assert_allclose(scaled_space, out)
38
+
39
+ scaled_back_space = qmc.scale(scaled_space, l_bounds=bounds[0],
40
+ u_bounds=bounds[1], reverse=True)
41
+ assert_allclose(scaled_back_space, space)
42
+
43
+ # broadcast
44
+ space = [[0, 0, 0], [1, 1, 1], [0.5, 0.5, 0.5]]
45
+ l_bounds, u_bounds = 0, [6, 5, 3]
46
+ out = [[0, 0, 0], [6, 5, 3], [3, 2.5, 1.5]]
47
+
48
+ scaled_space = qmc.scale(space, l_bounds=l_bounds, u_bounds=u_bounds)
49
+
50
+ assert_allclose(scaled_space, out)
51
+
52
+ def test_scale_random(self):
53
+ rng = np.random.default_rng(317589836511269190194010915937762468165)
54
+ sample = rng.random((30, 10))
55
+ a = -rng.random(10) * 10
56
+ b = rng.random(10) * 10
57
+ scaled = qmc.scale(sample, a, b, reverse=False)
58
+ unscaled = qmc.scale(scaled, a, b, reverse=True)
59
+ assert_allclose(unscaled, sample)
60
+
61
+ def test_scale_errors(self):
62
+ with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
63
+ space = [0, 1, 0.5]
64
+ qmc.scale(space, l_bounds=-2, u_bounds=6)
65
+
66
+ with pytest.raises(ValueError, match=r"Bounds are not consistent"):
67
+ space = [[0, 0], [1, 1], [0.5, 0.5]]
68
+ bounds = np.array([[-2, 6], [6, 5]])
69
+ qmc.scale(space, l_bounds=bounds[0], u_bounds=bounds[1])
70
+
71
+ with pytest.raises(ValueError, match=r"'l_bounds' and 'u_bounds'"
72
+ r" must be broadcastable"):
73
+ space = [[0, 0], [1, 1], [0.5, 0.5]]
74
+ l_bounds, u_bounds = [-2, 0, 2], [6, 5]
75
+ qmc.scale(space, l_bounds=l_bounds, u_bounds=u_bounds)
76
+
77
+ with pytest.raises(ValueError, match=r"'l_bounds' and 'u_bounds'"
78
+ r" must be broadcastable"):
79
+ space = [[0, 0], [1, 1], [0.5, 0.5]]
80
+ bounds = np.array([[-2, 0, 2], [6, 5, 5]])
81
+ qmc.scale(space, l_bounds=bounds[0], u_bounds=bounds[1])
82
+
83
+ with pytest.raises(ValueError, match=r"Sample is not in unit "
84
+ r"hypercube"):
85
+ space = [[0, 0], [1, 1.5], [0.5, 0.5]]
86
+ bounds = np.array([[-2, 0], [6, 5]])
87
+ qmc.scale(space, l_bounds=bounds[0], u_bounds=bounds[1])
88
+
89
+ with pytest.raises(ValueError, match=r"Sample is out of bounds"):
90
+ out = [[-2, 0], [6, 5], [8, 2.5]]
91
+ bounds = np.array([[-2, 0], [6, 5]])
92
+ qmc.scale(out, l_bounds=bounds[0], u_bounds=bounds[1],
93
+ reverse=True)
94
+
95
+ def test_discrepancy(self):
96
+ space_1 = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
97
+ space_1 = (2.0 * space_1 - 1.0) / (2.0 * 6.0)
98
+ space_2 = np.array([[1, 5], [2, 4], [3, 3], [4, 2], [5, 1], [6, 6]])
99
+ space_2 = (2.0 * space_2 - 1.0) / (2.0 * 6.0)
100
+
101
+ # From Fang et al. Design and modeling for computer experiments, 2006
102
+ assert_allclose(qmc.discrepancy(space_1), 0.0081, atol=1e-4)
103
+ assert_allclose(qmc.discrepancy(space_2), 0.0105, atol=1e-4)
104
+
105
+ # From Zhou Y.-D. et al. Mixture discrepancy for quasi-random point
106
+ # sets. Journal of Complexity, 29 (3-4), pp. 283-301, 2013.
107
+ # Example 4 on Page 298
108
+ sample = np.array([[2, 1, 1, 2, 2, 2],
109
+ [1, 2, 2, 2, 2, 2],
110
+ [2, 1, 1, 1, 1, 1],
111
+ [1, 1, 1, 1, 2, 2],
112
+ [1, 2, 2, 2, 1, 1],
113
+ [2, 2, 2, 2, 1, 1],
114
+ [2, 2, 2, 1, 2, 2]])
115
+ sample = (2.0 * sample - 1.0) / (2.0 * 2.0)
116
+
117
+ assert_allclose(qmc.discrepancy(sample, method='MD'), 2.5000,
118
+ atol=1e-4)
119
+ assert_allclose(qmc.discrepancy(sample, method='WD'), 1.3680,
120
+ atol=1e-4)
121
+ assert_allclose(qmc.discrepancy(sample, method='CD'), 0.3172,
122
+ atol=1e-4)
123
+
124
+ # From Tim P. et al. Minimizing the L2 and Linf star discrepancies
125
+ # of a single point in the unit hypercube. JCAM, 2005
126
+ # Table 1 on Page 283
127
+ for dim in [2, 4, 8, 16, 32, 64]:
128
+ ref = np.sqrt(3**(-dim))
129
+ assert_allclose(qmc.discrepancy(np.array([[1]*dim]),
130
+ method='L2-star'), ref)
131
+
132
+ def test_discrepancy_errors(self):
133
+ sample = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
134
+
135
+ with pytest.raises(
136
+ ValueError, match=r"Sample is not in unit hypercube"
137
+ ):
138
+ qmc.discrepancy(sample)
139
+
140
+ with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
141
+ qmc.discrepancy([1, 3])
142
+
143
+ sample = [[0, 0], [1, 1], [0.5, 0.5]]
144
+ with pytest.raises(ValueError, match=r"'toto' is not a valid ..."):
145
+ qmc.discrepancy(sample, method="toto")
146
+
147
+ @pytest.mark.thread_unsafe
148
+ def test_discrepancy_parallel(self, monkeypatch):
149
+ sample = np.array([[2, 1, 1, 2, 2, 2],
150
+ [1, 2, 2, 2, 2, 2],
151
+ [2, 1, 1, 1, 1, 1],
152
+ [1, 1, 1, 1, 2, 2],
153
+ [1, 2, 2, 2, 1, 1],
154
+ [2, 2, 2, 2, 1, 1],
155
+ [2, 2, 2, 1, 2, 2]])
156
+ sample = (2.0 * sample - 1.0) / (2.0 * 2.0)
157
+
158
+ assert_allclose(qmc.discrepancy(sample, method='MD', workers=8),
159
+ 2.5000,
160
+ atol=1e-4)
161
+ assert_allclose(qmc.discrepancy(sample, method='WD', workers=8),
162
+ 1.3680,
163
+ atol=1e-4)
164
+ assert_allclose(qmc.discrepancy(sample, method='CD', workers=8),
165
+ 0.3172,
166
+ atol=1e-4)
167
+
168
+ # From Tim P. et al. Minimizing the L2 and Linf star discrepancies
169
+ # of a single point in the unit hypercube. JCAM, 2005
170
+ # Table 1 on Page 283
171
+ for dim in [2, 4, 8, 16, 32, 64]:
172
+ ref = np.sqrt(3 ** (-dim))
173
+ assert_allclose(qmc.discrepancy(np.array([[1] * dim]),
174
+ method='L2-star', workers=-1), ref)
175
+
176
+ monkeypatch.setattr(os, 'cpu_count', lambda: None)
177
+ with pytest.raises(NotImplementedError, match="Cannot determine the"):
178
+ qmc.discrepancy(sample, workers=-1)
179
+
180
+ with pytest.raises(ValueError, match="Invalid number of workers..."):
181
+ qmc.discrepancy(sample, workers=-2)
182
+
183
+ def test_geometric_discrepancy_errors(self):
184
+ sample = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
185
+
186
+ with pytest.raises(ValueError, match=r"Sample is not in unit hypercube"):
187
+ qmc.geometric_discrepancy(sample)
188
+
189
+ with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
190
+ qmc.geometric_discrepancy([1, 3])
191
+
192
+ sample = [[0, 0], [1, 1], [0.5, 0.5]]
193
+ with pytest.raises(ValueError, match=r"'toto' is not a valid ..."):
194
+ qmc.geometric_discrepancy(sample, method="toto")
195
+
196
+ sample = np.array([[0, 0], [0, 0], [0, 1]])
197
+ with pytest.warns(UserWarning, match="Sample contains duplicate points."):
198
+ qmc.geometric_discrepancy(sample)
199
+
200
+ sample = np.array([[0.5, 0.5]])
201
+ with pytest.raises(ValueError, match="Sample must contain at least two points"):
202
+ qmc.geometric_discrepancy(sample)
203
+
204
+ def test_geometric_discrepancy(self):
205
+ sample = np.array([[0, 0], [1, 1]])
206
+ assert_allclose(qmc.geometric_discrepancy(sample), np.sqrt(2))
207
+ assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), np.sqrt(2))
208
+
209
+ sample = np.array([[0, 0], [0, 1], [0.5, 1]])
210
+ assert_allclose(qmc.geometric_discrepancy(sample), 0.5)
211
+ assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), 0.75)
212
+
213
+ sample = np.array([[0, 0], [0.25, 0.25], [1, 1]])
214
+ assert_allclose(qmc.geometric_discrepancy(sample), np.sqrt(2) / 4)
215
+ assert_allclose(qmc.geometric_discrepancy(sample, method="mst"), np.sqrt(2) / 2)
216
+ assert_allclose(qmc.geometric_discrepancy(sample, metric="chebyshev"), 0.25)
217
+ assert_allclose(
218
+ qmc.geometric_discrepancy(sample, method="mst", metric="chebyshev"), 0.5
219
+ )
220
+
221
+ rng = np.random.default_rng(191468432622931918890291693003068437394)
222
+ sample = qmc.LatinHypercube(d=3, rng=rng).random(50)
223
+ assert_allclose(qmc.geometric_discrepancy(sample), 0.05106012076093356)
224
+ assert_allclose(
225
+ qmc.geometric_discrepancy(sample, method='mst'), 0.19704396643366182
226
+ )
227
+
228
+ @pytest.mark.xfail(
229
+ reason="minimum_spanning_tree ignores zero distances (#18892)",
230
+ strict=True,
231
+ )
232
+ @pytest.mark.thread_unsafe
233
+ def test_geometric_discrepancy_mst_with_zero_distances(self):
234
+ sample = np.array([[0, 0], [0, 0], [0, 1]])
235
+ assert_allclose(qmc.geometric_discrepancy(sample, method='mst'), 0.5)
236
+
237
+ def test_update_discrepancy(self):
238
+ # From Fang et al. Design and modeling for computer experiments, 2006
239
+ space_1 = np.array([[1, 3], [2, 6], [3, 2], [4, 5], [5, 1], [6, 4]])
240
+ space_1 = (2.0 * space_1 - 1.0) / (2.0 * 6.0)
241
+
242
+ disc_init = qmc.discrepancy(space_1[:-1], iterative=True)
243
+ disc_iter = update_discrepancy(space_1[-1], space_1[:-1], disc_init)
244
+
245
+ assert_allclose(disc_iter, 0.0081, atol=1e-4)
246
+
247
+ # n<d
248
+ rng = np.random.default_rng(241557431858162136881731220526394276199)
249
+ space_1 = rng.random((4, 10))
250
+
251
+ disc_ref = qmc.discrepancy(space_1)
252
+ disc_init = qmc.discrepancy(space_1[:-1], iterative=True)
253
+ disc_iter = update_discrepancy(space_1[-1], space_1[:-1], disc_init)
254
+
255
+ assert_allclose(disc_iter, disc_ref, atol=1e-4)
256
+
257
+ # errors
258
+ with pytest.raises(ValueError, match=r"Sample is not in unit "
259
+ r"hypercube"):
260
+ update_discrepancy(space_1[-1], space_1[:-1] + 1, disc_init)
261
+
262
+ with pytest.raises(ValueError, match=r"Sample is not a 2D array"):
263
+ update_discrepancy(space_1[-1], space_1[0], disc_init)
264
+
265
+ x_new = [1, 3]
266
+ with pytest.raises(ValueError, match=r"x_new is not in unit "
267
+ r"hypercube"):
268
+ update_discrepancy(x_new, space_1[:-1], disc_init)
269
+
270
+ x_new = [[0.5, 0.5]]
271
+ with pytest.raises(ValueError, match=r"x_new is not a 1D array"):
272
+ update_discrepancy(x_new, space_1[:-1], disc_init)
273
+
274
+ x_new = [0.3, 0.1, 0]
275
+ with pytest.raises(ValueError, match=r"x_new and sample must be "
276
+ r"broadcastable"):
277
+ update_discrepancy(x_new, space_1[:-1], disc_init)
278
+
279
+ def test_perm_discrepancy(self):
280
+ rng = np.random.default_rng(46449423132557934943847369749645759997)
281
+ qmc_gen = qmc.LatinHypercube(5, rng=rng)
282
+ sample = qmc_gen.random(10)
283
+ disc = qmc.discrepancy(sample)
284
+
285
+ for i in range(100):
286
+ row_1 = rng.integers(10)
287
+ row_2 = rng.integers(10)
288
+ col = rng.integers(5)
289
+
290
+ disc = _perturb_discrepancy(sample, row_1, row_2, col, disc)
291
+ sample[row_1, col], sample[row_2, col] = (
292
+ sample[row_2, col], sample[row_1, col])
293
+ disc_reference = qmc.discrepancy(sample)
294
+ assert_allclose(disc, disc_reference)
295
+
296
+ def test_discrepancy_alternative_implementation(self):
297
+ """Alternative definitions from Matt Haberland."""
298
+
299
+ def disc_c2(x):
300
+ n, s = x.shape
301
+ xij = x
302
+ disc1 = np.sum(np.prod((1
303
+ + 1/2*np.abs(xij-0.5)
304
+ - 1/2*np.abs(xij-0.5)**2), axis=1))
305
+ xij = x[None, :, :]
306
+ xkj = x[:, None, :]
307
+ disc2 = np.sum(np.sum(np.prod(1
308
+ + 1/2*np.abs(xij - 0.5)
309
+ + 1/2*np.abs(xkj - 0.5)
310
+ - 1/2*np.abs(xij - xkj), axis=2),
311
+ axis=0))
312
+ return (13/12)**s - 2/n * disc1 + 1/n**2*disc2
313
+
314
+ def disc_wd(x):
315
+ n, s = x.shape
316
+ xij = x[None, :, :]
317
+ xkj = x[:, None, :]
318
+ disc = np.sum(np.sum(np.prod(3/2
319
+ - np.abs(xij - xkj)
320
+ + np.abs(xij - xkj)**2, axis=2),
321
+ axis=0))
322
+ return -(4/3)**s + 1/n**2 * disc
323
+
324
+ def disc_md(x):
325
+ n, s = x.shape
326
+ xij = x
327
+ disc1 = np.sum(np.prod((5/3
328
+ - 1/4*np.abs(xij-0.5)
329
+ - 1/4*np.abs(xij-0.5)**2), axis=1))
330
+ xij = x[None, :, :]
331
+ xkj = x[:, None, :]
332
+ disc2 = np.sum(np.sum(np.prod(15/8
333
+ - 1/4*np.abs(xij - 0.5)
334
+ - 1/4*np.abs(xkj - 0.5)
335
+ - 3/4*np.abs(xij - xkj)
336
+ + 1/2*np.abs(xij - xkj)**2,
337
+ axis=2), axis=0))
338
+ return (19/12)**s - 2/n * disc1 + 1/n**2*disc2
339
+
340
+ def disc_star_l2(x):
341
+ n, s = x.shape
342
+ return np.sqrt(
343
+ 3 ** (-s) - 2 ** (1 - s) / n
344
+ * np.sum(np.prod(1 - x ** 2, axis=1))
345
+ + np.sum([
346
+ np.prod(1 - np.maximum(x[k, :], x[j, :]))
347
+ for k in range(n) for j in range(n)
348
+ ]) / n ** 2
349
+ )
350
+
351
+ rng = np.random.default_rng(117065081482921065782761407107747179201)
352
+ sample = rng.random((30, 10))
353
+
354
+ disc_curr = qmc.discrepancy(sample, method='CD')
355
+ disc_alt = disc_c2(sample)
356
+ assert_allclose(disc_curr, disc_alt)
357
+
358
+ disc_curr = qmc.discrepancy(sample, method='WD')
359
+ disc_alt = disc_wd(sample)
360
+ assert_allclose(disc_curr, disc_alt)
361
+
362
+ disc_curr = qmc.discrepancy(sample, method='MD')
363
+ disc_alt = disc_md(sample)
364
+ assert_allclose(disc_curr, disc_alt)
365
+
366
+ disc_curr = qmc.discrepancy(sample, method='L2-star')
367
+ disc_alt = disc_star_l2(sample)
368
+ assert_allclose(disc_curr, disc_alt)
369
+
370
+ def test_n_primes(self):
371
+ primes = n_primes(10)
372
+ assert primes[-1] == 29
373
+
374
+ primes = n_primes(168)
375
+ assert primes[-1] == 997
376
+
377
+ primes = n_primes(350)
378
+ assert primes[-1] == 2357
379
+
380
+ def test_primes(self):
381
+ primes = primes_from_2_to(50)
382
+ out = [2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47]
383
+ assert_allclose(primes, out)
384
+
385
+
386
+ class TestVDC:
387
+ def test_van_der_corput(self):
388
+ sample = van_der_corput(10)
389
+ out = [0.0, 0.5, 0.25, 0.75, 0.125, 0.625,
390
+ 0.375, 0.875, 0.0625, 0.5625]
391
+ assert_allclose(sample, out)
392
+
393
+ sample = van_der_corput(10, workers=4)
394
+ assert_allclose(sample, out)
395
+
396
+ sample = van_der_corput(10, workers=8)
397
+ assert_allclose(sample, out)
398
+
399
+ sample = van_der_corput(7, start_index=3)
400
+ assert_allclose(sample, out[3:])
401
+
402
+ def test_van_der_corput_scramble(self):
403
+ rng = 338213789010180879520345496831675783177
404
+ out = van_der_corput(10, scramble=True, rng=rng)
405
+
406
+ sample = van_der_corput(7, start_index=3, scramble=True, rng=rng)
407
+ assert_allclose(sample, out[3:])
408
+
409
+ sample = van_der_corput(
410
+ 7, start_index=3, scramble=True, rng=rng, workers=4
411
+ )
412
+ assert_allclose(sample, out[3:])
413
+
414
+ sample = van_der_corput(
415
+ 7, start_index=3, scramble=True, rng=rng, workers=8
416
+ )
417
+ assert_allclose(sample, out[3:])
418
+
419
+ def test_invalid_base_error(self):
420
+ with pytest.raises(ValueError, match=r"'base' must be at least 2"):
421
+ van_der_corput(10, base=1)
422
+
423
+
424
+ class RandomEngine(qmc.QMCEngine):
425
+ def __init__(self, d, optimization=None, rng=None):
426
+ super().__init__(d=d, optimization=optimization, rng=rng)
427
+
428
+ def _random(self, n=1, *, workers=1):
429
+ sample = self.rng.random((n, self.d))
430
+ return sample
431
+
432
+
433
+ def test_subclassing_QMCEngine():
434
+ engine = RandomEngine(2, rng=175180605424926556207367152557812293274)
435
+
436
+ sample_1 = engine.random(n=5)
437
+ sample_2 = engine.random(n=7)
438
+ assert engine.num_generated == 12
439
+
440
+ # reset and re-sample
441
+ engine.reset()
442
+ assert engine.num_generated == 0
443
+
444
+ sample_1_test = engine.random(n=5)
445
+ assert_equal(sample_1, sample_1_test)
446
+
447
+ # repeat reset and fast forward
448
+ engine.reset()
449
+ engine.fast_forward(n=5)
450
+ sample_2_test = engine.random(n=7)
451
+
452
+ assert_equal(sample_2, sample_2_test)
453
+ assert engine.num_generated == 12
454
+
455
+
456
+ def test_raises():
457
+ # input validation
458
+ with pytest.raises(ValueError, match=r"d must be a non-negative integer"):
459
+ RandomEngine((2,))
460
+
461
+ with pytest.raises(ValueError, match=r"d must be a non-negative integer"):
462
+ RandomEngine(-1)
463
+
464
+ msg = r"'u_bounds' and 'l_bounds' must be integers"
465
+ with pytest.raises(ValueError, match=msg):
466
+ engine = RandomEngine(1)
467
+ engine.integers(l_bounds=1, u_bounds=1.1)
468
+
469
+
470
+ def test_integers():
471
+ engine = RandomEngine(1, rng=231195739755290648063853336582377368684)
472
+
473
+ # basic tests
474
+ sample = engine.integers(1, n=10)
475
+ assert_equal(np.unique(sample), [0])
476
+
477
+ assert sample.dtype == np.dtype('int64')
478
+
479
+ sample = engine.integers(1, n=10, endpoint=True)
480
+ assert_equal(np.unique(sample), [0, 1])
481
+
482
+ low = -5
483
+ high = 7
484
+
485
+ # scaling logic
486
+ engine.reset()
487
+ ref_sample = engine.random(20)
488
+ ref_sample = ref_sample * (high - low) + low
489
+ ref_sample = np.floor(ref_sample).astype(np.int64)
490
+
491
+ engine.reset()
492
+ sample = engine.integers(low, u_bounds=high, n=20, endpoint=False)
493
+
494
+ assert_equal(sample, ref_sample)
495
+
496
+ # up to bounds, no less, no more
497
+ sample = engine.integers(low, u_bounds=high, n=100, endpoint=False)
498
+ assert_equal((sample.min(), sample.max()), (low, high-1))
499
+
500
+ sample = engine.integers(low, u_bounds=high, n=100, endpoint=True)
501
+ assert_equal((sample.min(), sample.max()), (low, high))
502
+
503
+
504
+ def test_integers_nd():
505
+ d = 10
506
+ rng = np.random.default_rng(3716505122102428560615700415287450951)
507
+ low = rng.integers(low=-5, high=-1, size=d)
508
+ high = rng.integers(low=1, high=5, size=d, endpoint=True)
509
+ engine = RandomEngine(d, rng=rng)
510
+
511
+ sample = engine.integers(low, u_bounds=high, n=100, endpoint=False)
512
+ assert_equal(sample.min(axis=0), low)
513
+ assert_equal(sample.max(axis=0), high-1)
514
+
515
+ sample = engine.integers(low, u_bounds=high, n=100, endpoint=True)
516
+ assert_equal(sample.min(axis=0), low)
517
+ assert_equal(sample.max(axis=0), high)
518
+
519
+
520
+ class QMCEngineTests:
521
+ """Generic tests for QMC engines."""
522
+ qmce = NotImplemented
523
+ can_scramble = NotImplemented
524
+ unscramble_nd = NotImplemented
525
+ scramble_nd = NotImplemented
526
+
527
+ scramble = [True, False]
528
+ ids = ["Scrambled", "Unscrambled"]
529
+
530
+ def engine(
531
+ self, scramble: bool,
532
+ rng=170382760648021597650530316304495310428,
533
+ **kwargs
534
+ ) -> QMCEngine:
535
+ # preserve use of `seed` during SPEC 7 transition because
536
+ # some tests rely on behavior with integer `seed` (which is
537
+ # different from behavior with integer `rng`)
538
+ if self.can_scramble:
539
+ return self.qmce(scramble=scramble, seed=rng, **kwargs)
540
+ else:
541
+ if scramble:
542
+ pytest.skip()
543
+ else:
544
+ return self.qmce(seed=rng, **kwargs)
545
+
546
+ def reference(self, scramble: bool) -> np.ndarray:
547
+ return self.scramble_nd if scramble else self.unscramble_nd
548
+
549
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
550
+ def test_0dim(self, scramble):
551
+ engine = self.engine(d=0, scramble=scramble)
552
+ sample = engine.random(4)
553
+ assert_array_equal(np.empty((4, 0)), sample)
554
+
555
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
556
+ def test_0sample(self, scramble):
557
+ engine = self.engine(d=2, scramble=scramble)
558
+ sample = engine.random(0)
559
+ assert_array_equal(np.empty((0, 2)), sample)
560
+
561
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
562
+ def test_1sample(self, scramble):
563
+ engine = self.engine(d=2, scramble=scramble)
564
+ sample = engine.random(1)
565
+ assert (1, 2) == sample.shape
566
+
567
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
568
+ def test_bounds(self, scramble):
569
+ engine = self.engine(d=100, scramble=scramble)
570
+ sample = engine.random(512)
571
+ assert np.all(sample >= 0)
572
+ assert np.all(sample <= 1)
573
+
574
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
575
+ def test_sample(self, scramble):
576
+ ref_sample = self.reference(scramble=scramble)
577
+ engine = self.engine(d=2, scramble=scramble)
578
+ sample = engine.random(n=len(ref_sample))
579
+
580
+ assert_allclose(sample, ref_sample, atol=1e-1)
581
+ assert engine.num_generated == len(ref_sample)
582
+
583
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
584
+ def test_continuing(self, scramble):
585
+ engine = self.engine(d=2, scramble=scramble)
586
+ ref_sample = engine.random(n=8)
587
+
588
+ engine = self.engine(d=2, scramble=scramble)
589
+
590
+ n_half = len(ref_sample) // 2
591
+
592
+ _ = engine.random(n=n_half)
593
+ sample = engine.random(n=n_half)
594
+ assert_allclose(sample, ref_sample[n_half:], atol=1e-1)
595
+
596
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
597
+ @pytest.mark.parametrize(
598
+ "rng",
599
+ (
600
+ 170382760648021597650530316304495310428,
601
+ np.random.default_rng(170382760648021597650530316304495310428),
602
+ None,
603
+ ),
604
+ )
605
+ @pytest.mark.thread_unsafe
606
+ def test_reset(self, scramble, rng):
607
+ engine = self.engine(d=2, scramble=scramble, rng=rng)
608
+ ref_sample = engine.random(n=8)
609
+
610
+ engine.reset()
611
+ assert engine.num_generated == 0
612
+
613
+ sample = engine.random(n=8)
614
+ assert_allclose(sample, ref_sample)
615
+
616
+ @pytest.mark.parametrize("scramble", scramble, ids=ids)
617
+ def test_fast_forward(self, scramble):
618
+ engine = self.engine(d=2, scramble=scramble)
619
+ ref_sample = engine.random(n=8)
620
+
621
+ engine = self.engine(d=2, scramble=scramble)
622
+
623
+ engine.fast_forward(4)
624
+ sample = engine.random(n=4)
625
+
626
+ assert_allclose(sample, ref_sample[4:], atol=1e-1)
627
+
628
+ # alternate fast forwarding with sampling
629
+ engine.reset()
630
+ even_draws = []
631
+ for i in range(8):
632
+ if i % 2 == 0:
633
+ even_draws.append(engine.random())
634
+ else:
635
+ engine.fast_forward(1)
636
+ assert_allclose(
637
+ ref_sample[[i for i in range(8) if i % 2 == 0]],
638
+ np.concatenate(even_draws),
639
+ atol=1e-5
640
+ )
641
+
642
+ @pytest.mark.parametrize("scramble", [True])
643
+ def test_distribution(self, scramble):
644
+ d = 50
645
+ engine = self.engine(d=d, scramble=scramble)
646
+ sample = engine.random(1024)
647
+ assert_allclose(
648
+ np.mean(sample, axis=0), np.repeat(0.5, d), atol=1e-2
649
+ )
650
+ assert_allclose(
651
+ np.percentile(sample, 25, axis=0), np.repeat(0.25, d), atol=1e-2
652
+ )
653
+ assert_allclose(
654
+ np.percentile(sample, 75, axis=0), np.repeat(0.75, d), atol=1e-2
655
+ )
656
+
657
+ def test_raises_optimizer(self):
658
+ message = r"'toto' is not a valid optimization method"
659
+ with pytest.raises(ValueError, match=message):
660
+ self.engine(d=1, scramble=False, optimization="toto")
661
+
662
+ @pytest.mark.parametrize(
663
+ "optimization,metric",
664
+ [
665
+ ("random-CD", qmc.discrepancy),
666
+ ("lloyd", lambda sample: -_l1_norm(sample))]
667
+ )
668
+ def test_optimizers(self, optimization, metric):
669
+ engine = self.engine(d=2, scramble=False)
670
+ sample_ref = engine.random(n=64)
671
+ metric_ref = metric(sample_ref)
672
+
673
+ optimal_ = self.engine(d=2, scramble=False, optimization=optimization)
674
+ sample_ = optimal_.random(n=64)
675
+ metric_ = metric(sample_)
676
+
677
+ assert metric_ < metric_ref
678
+
679
+ def test_consume_prng_state(self):
680
+ rng = np.random.default_rng(0xa29cabb11cfdf44ff6cac8bec254c2a0)
681
+ sample = []
682
+ for i in range(3):
683
+ engine = self.engine(d=2, scramble=True, rng=rng)
684
+ sample.append(engine.random(4))
685
+
686
+ with pytest.raises(AssertionError, match="Arrays are not equal"):
687
+ assert_equal(sample[0], sample[1])
688
+ with pytest.raises(AssertionError, match="Arrays are not equal"):
689
+ assert_equal(sample[0], sample[2])
690
+
691
+
692
+ class TestHalton(QMCEngineTests):
693
+ qmce = qmc.Halton
694
+ can_scramble = True
695
+ # theoretical values known from Van der Corput
696
+ unscramble_nd = np.array([[0, 0], [1 / 2, 1 / 3],
697
+ [1 / 4, 2 / 3], [3 / 4, 1 / 9],
698
+ [1 / 8, 4 / 9], [5 / 8, 7 / 9],
699
+ [3 / 8, 2 / 9], [7 / 8, 5 / 9]])
700
+ # theoretical values unknown: convergence properties checked
701
+ scramble_nd = np.array([[0.50246036, 0.93382481],
702
+ [0.00246036, 0.26715815],
703
+ [0.75246036, 0.60049148],
704
+ [0.25246036, 0.8227137 ],
705
+ [0.62746036, 0.15604704],
706
+ [0.12746036, 0.48938037],
707
+ [0.87746036, 0.71160259],
708
+ [0.37746036, 0.04493592]])
709
+
710
+ def test_workers(self):
711
+ ref_sample = self.reference(scramble=True)
712
+ engine = self.engine(d=2, scramble=True)
713
+ sample = engine.random(n=len(ref_sample), workers=8)
714
+
715
+ assert_allclose(sample, ref_sample, atol=1e-3)
716
+
717
+ # worker + integers
718
+ engine.reset()
719
+ ref_sample = engine.integers(10)
720
+ engine.reset()
721
+ sample = engine.integers(10, workers=8)
722
+ assert_equal(sample, ref_sample)
723
+
724
+
725
+ class TestLHS(QMCEngineTests):
726
+ qmce = qmc.LatinHypercube
727
+ can_scramble = True
728
+
729
+ def test_continuing(self, *args):
730
+ pytest.skip("Not applicable: not a sequence.")
731
+
732
+ def test_fast_forward(self, *args):
733
+ pytest.skip("Not applicable: not a sequence.")
734
+
735
+ def test_sample(self, *args):
736
+ pytest.skip("Not applicable: the value of reference sample is"
737
+ " implementation dependent.")
738
+
739
+ @pytest.mark.parametrize("strength", [1, 2])
740
+ @pytest.mark.parametrize("scramble", [False, True])
741
+ @pytest.mark.parametrize("optimization", [None, "random-CD"])
742
+ def test_sample_stratified(self, optimization, scramble, strength):
743
+ rng = np.random.default_rng(37511836202578819870665127532742111260)
744
+ p = 5
745
+ n = p**2
746
+ d = 6
747
+
748
+ engine = qmc.LatinHypercube(d=d, scramble=scramble,
749
+ strength=strength,
750
+ optimization=optimization,
751
+ rng=rng)
752
+ sample = engine.random(n=n)
753
+ assert sample.shape == (n, d)
754
+ assert engine.num_generated == n
755
+
756
+ # centering stratifies samples in the middle of equal segments:
757
+ # * inter-sample distance is constant in 1D sub-projections
758
+ # * after ordering, columns are equal
759
+ expected1d = (np.arange(n) + 0.5) / n
760
+ expected = np.broadcast_to(expected1d, (d, n)).T
761
+ assert np.any(sample != expected)
762
+
763
+ sorted_sample = np.sort(sample, axis=0)
764
+ tol = 0.5 / n if scramble else 0
765
+
766
+ assert_allclose(sorted_sample, expected, atol=tol)
767
+ assert np.any(sample - expected > tol)
768
+
769
+ if strength == 2 and optimization is None:
770
+ unique_elements = np.arange(p)
771
+ desired = set(product(unique_elements, unique_elements))
772
+
773
+ for i, j in combinations(range(engine.d), 2):
774
+ samples_2d = sample[:, [i, j]]
775
+ res = (samples_2d * p).astype(int)
776
+ res_set = {tuple(row) for row in res}
777
+ assert_equal(res_set, desired)
778
+
779
+ def test_optimizer_1d(self):
780
+ # discrepancy measures are invariant under permuting factors and runs
781
+ engine = self.engine(d=1, scramble=False)
782
+ sample_ref = engine.random(n=64)
783
+
784
+ optimal_ = self.engine(d=1, scramble=False, optimization="random-CD")
785
+ sample_ = optimal_.random(n=64)
786
+
787
+ assert_array_equal(sample_ref, sample_)
788
+
789
+ def test_raises(self):
790
+ message = r"not a valid strength"
791
+ with pytest.raises(ValueError, match=message):
792
+ qmc.LatinHypercube(1, strength=3)
793
+
794
+ message = r"n is not the square of a prime number"
795
+ with pytest.raises(ValueError, match=message):
796
+ engine = qmc.LatinHypercube(d=2, strength=2)
797
+ engine.random(16)
798
+
799
+ message = r"n is not the square of a prime number"
800
+ with pytest.raises(ValueError, match=message):
801
+ engine = qmc.LatinHypercube(d=2, strength=2)
802
+ engine.random(5) # because int(sqrt(5)) would result in 2
803
+
804
+ message = r"n is too small for d"
805
+ with pytest.raises(ValueError, match=message):
806
+ engine = qmc.LatinHypercube(d=5, strength=2)
807
+ engine.random(9)
808
+
809
+
810
+ class TestSobol(QMCEngineTests):
811
+ qmce = qmc.Sobol
812
+ can_scramble = True
813
+ # theoretical values from Joe Kuo2010
814
+ unscramble_nd = np.array([[0., 0.],
815
+ [0.5, 0.5],
816
+ [0.75, 0.25],
817
+ [0.25, 0.75],
818
+ [0.375, 0.375],
819
+ [0.875, 0.875],
820
+ [0.625, 0.125],
821
+ [0.125, 0.625]])
822
+
823
+ # theoretical values unknown: convergence properties checked
824
+ scramble_nd = np.array([[0.25331921, 0.41371179],
825
+ [0.8654213, 0.9821167],
826
+ [0.70097554, 0.03664616],
827
+ [0.18027647, 0.60895735],
828
+ [0.10521339, 0.21897069],
829
+ [0.53019685, 0.66619033],
830
+ [0.91122276, 0.34580743],
831
+ [0.45337471, 0.78912079]])
832
+
833
+ def test_warning(self):
834
+ with pytest.warns(UserWarning, match=r"The balance properties of "
835
+ r"Sobol' points"):
836
+ engine = qmc.Sobol(1)
837
+ engine.random(10)
838
+
839
+ def test_random_base2(self):
840
+ engine = qmc.Sobol(2, scramble=False)
841
+ sample = engine.random_base2(2)
842
+ assert_array_equal(self.unscramble_nd[:4], sample)
843
+
844
+ # resampling still having N=2**n
845
+ sample = engine.random_base2(2)
846
+ assert_array_equal(self.unscramble_nd[4:8], sample)
847
+
848
+ # resampling again but leading to N!=2**n
849
+ with pytest.raises(ValueError, match=r"The balance properties of "
850
+ r"Sobol' points"):
851
+ engine.random_base2(2)
852
+
853
+ def test_raise(self):
854
+ with pytest.raises(ValueError, match=r"Maximum supported "
855
+ r"dimensionality"):
856
+ qmc.Sobol(qmc.Sobol.MAXDIM + 1)
857
+
858
+ with pytest.raises(ValueError, match=r"Maximum supported "
859
+ r"'bits' is 64"):
860
+ qmc.Sobol(1, bits=65)
861
+
862
+ def test_high_dim(self):
863
+ engine = qmc.Sobol(1111, scramble=False)
864
+ count1 = Counter(engine.random().flatten().tolist())
865
+ count2 = Counter(engine.random().flatten().tolist())
866
+ assert_equal(count1, Counter({0.0: 1111}))
867
+ assert_equal(count2, Counter({0.5: 1111}))
868
+
869
+ @pytest.mark.parametrize("bits", [2, 3])
870
+ def test_bits(self, bits):
871
+ engine = qmc.Sobol(2, scramble=False, bits=bits)
872
+ ns = 2**bits
873
+ sample = engine.random(ns)
874
+ assert_array_equal(self.unscramble_nd[:ns], sample)
875
+
876
+ with pytest.raises(ValueError, match="increasing `bits`"):
877
+ engine.random()
878
+
879
+ def test_64bits(self):
880
+ engine = qmc.Sobol(2, scramble=False, bits=64)
881
+ sample = engine.random(8)
882
+ assert_array_equal(self.unscramble_nd, sample)
883
+
884
+
885
+ class TestPoisson(QMCEngineTests):
886
+ qmce = qmc.PoissonDisk
887
+ can_scramble = False
888
+
889
+ def test_bounds(self, *args):
890
+ pytest.skip("Too costly in memory.")
891
+
892
+ def test_fast_forward(self, *args):
893
+ pytest.skip("Not applicable: recursive process.")
894
+
895
+ def test_sample(self, *args):
896
+ pytest.skip("Not applicable: the value of reference sample is"
897
+ " implementation dependent.")
898
+
899
+ def test_continuing(self, *args):
900
+ # can continue a sampling, but will not preserve the same order
901
+ # because candidates are lost, so we will not select the same center
902
+ radius = 0.05
903
+ ns = 6
904
+ engine = self.engine(d=2, radius=radius, scramble=False)
905
+
906
+ sample_init = engine.random(n=ns)
907
+ assert len(sample_init) <= ns
908
+ assert l2_norm(sample_init) >= radius
909
+
910
+ sample_continued = engine.random(n=ns)
911
+ assert len(sample_continued) <= ns
912
+ assert l2_norm(sample_continued) >= radius
913
+
914
+ sample = np.concatenate([sample_init, sample_continued], axis=0)
915
+ assert len(sample) <= ns * 2
916
+ assert l2_norm(sample) >= radius
917
+
918
+ def test_mindist(self):
919
+ rng = np.random.default_rng(132074951149370773672162394161442690287)
920
+ ns = 50
921
+
922
+ low, high = 0.08, 0.2
923
+ radii = (high - low) * rng.random(5) + low
924
+
925
+ dimensions = [1, 3, 4]
926
+ hypersphere_methods = ["volume", "surface"]
927
+
928
+ gen = product(dimensions, radii, hypersphere_methods)
929
+
930
+ for d, radius, hypersphere in gen:
931
+ engine = self.qmce(
932
+ d=d, radius=radius, hypersphere=hypersphere, rng=rng
933
+ )
934
+ sample = engine.random(ns)
935
+
936
+ assert len(sample) <= ns
937
+ assert l2_norm(sample) >= radius
938
+
939
+ def test_fill_space(self):
940
+ radius = 0.2
941
+ engine = self.qmce(d=2, radius=radius)
942
+
943
+ sample = engine.fill_space()
944
+ # circle packing problem is np complex
945
+ assert l2_norm(sample) >= radius
946
+
947
+ @pytest.mark.parametrize("l_bounds", [[-1, -2, -1], [1, 2, 1]])
948
+ def test_sample_inside_lower_bounds(self, l_bounds):
949
+ radius = 0.2
950
+ u_bounds=[3, 3, 2]
951
+ engine = self.qmce(
952
+ d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds
953
+ )
954
+ sample = engine.random(30)
955
+
956
+ for point in sample:
957
+ assert_array_less(point, u_bounds)
958
+ assert_array_less(l_bounds, point)
959
+
960
+ @pytest.mark.parametrize("u_bounds", [[-1, -2, -1], [1, 2, 1]])
961
+ def test_sample_inside_upper_bounds(self, u_bounds):
962
+ radius = 0.2
963
+ l_bounds=[-3, -3, -2]
964
+ engine = self.qmce(
965
+ d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds
966
+ )
967
+ sample = engine.random(30)
968
+
969
+ for point in sample:
970
+ assert_array_less(point, u_bounds)
971
+ assert_array_less(l_bounds, point)
972
+
973
+ def test_inconsistent_bound_value(self):
974
+ radius = 0.2
975
+ l_bounds=[3, 2, 1]
976
+ u_bounds=[-1, -2, -1]
977
+ with pytest.raises(
978
+ ValueError,
979
+ match="Bounds are not consistent 'l_bounds' < 'u_bounds'"):
980
+ self.qmce(d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds)
981
+
982
+ @pytest.mark.parametrize("u_bounds", [[-1, -2, -1], [-1, -2]])
983
+ @pytest.mark.parametrize("l_bounds", [[3, 2]])
984
+ def test_inconsistent_bounds(self, u_bounds, l_bounds):
985
+ radius = 0.2
986
+ with pytest.raises(
987
+ ValueError,
988
+ match="'l_bounds' and 'u_bounds' must be broadcastable and respect"
989
+ " the sample dimension"):
990
+ self.qmce(
991
+ d=3, radius=radius,
992
+ l_bounds=l_bounds, u_bounds=u_bounds
993
+ )
994
+
995
+ def test_raises(self):
996
+ message = r"'toto' is not a valid hypersphere sampling"
997
+ with pytest.raises(ValueError, match=message):
998
+ qmc.PoissonDisk(1, hypersphere="toto")
999
+
1000
+
1001
+ class TestMultinomialQMC:
1002
+ def test_validations(self):
1003
+ # negative Ps
1004
+ p = np.array([0.12, 0.26, -0.05, 0.35, 0.22])
1005
+ with pytest.raises(ValueError, match=r"Elements of pvals must "
1006
+ r"be non-negative."):
1007
+ qmc.MultinomialQMC(p, n_trials=10)
1008
+
1009
+ # sum of P too large
1010
+ p = np.array([0.12, 0.26, 0.1, 0.35, 0.22])
1011
+ message = r"Elements of pvals must sum to 1."
1012
+ with pytest.raises(ValueError, match=message):
1013
+ qmc.MultinomialQMC(p, n_trials=10)
1014
+
1015
+ p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
1016
+
1017
+ message = r"Dimension of `engine` must be 1."
1018
+ with pytest.raises(ValueError, match=message):
1019
+ qmc.MultinomialQMC(p, n_trials=10, engine=qmc.Sobol(d=2))
1020
+
1021
+ message = r"`engine` must be an instance of..."
1022
+ with pytest.raises(ValueError, match=message):
1023
+ qmc.MultinomialQMC(p, n_trials=10, engine=np.random.default_rng())
1024
+
1025
+ @pytest.mark.filterwarnings('ignore::UserWarning')
1026
+ def test_MultinomialBasicDraw(self):
1027
+ rng = np.random.default_rng(6955663962957011631562466584467607969)
1028
+ p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
1029
+ n_trials = 100
1030
+ expected = np.atleast_2d(n_trials * p).astype(int)
1031
+ # preserve use of legacy keyword during SPEC 7 transition
1032
+ engine = qmc.MultinomialQMC(p, n_trials=n_trials, seed=rng)
1033
+ assert_allclose(engine.random(1), expected, atol=1)
1034
+
1035
+ def test_MultinomialDistribution(self):
1036
+ rng = np.random.default_rng(77797854505813727292048130876699859000)
1037
+ p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
1038
+ engine = qmc.MultinomialQMC(p, n_trials=8192, rng=rng)
1039
+ draws = engine.random(1)
1040
+ assert_allclose(draws / np.sum(draws), np.atleast_2d(p), atol=1e-4)
1041
+
1042
+ def test_FindIndex(self):
1043
+ p_cumulative = np.array([0.1, 0.4, 0.45, 0.6, 0.75, 0.9, 0.99, 1.0])
1044
+ size = len(p_cumulative)
1045
+ assert_equal(_test_find_index(p_cumulative, size, 0.0), 0)
1046
+ assert_equal(_test_find_index(p_cumulative, size, 0.4), 2)
1047
+ assert_equal(_test_find_index(p_cumulative, size, 0.44999), 2)
1048
+ assert_equal(_test_find_index(p_cumulative, size, 0.45001), 3)
1049
+ assert_equal(_test_find_index(p_cumulative, size, 1.0), size - 1)
1050
+
1051
+ @pytest.mark.filterwarnings('ignore::UserWarning')
1052
+ def test_other_engine(self):
1053
+ # same as test_MultinomialBasicDraw with different engine
1054
+ rng = np.random.default_rng(283753519042773243071753037669078065412)
1055
+ p = np.array([0.12, 0.26, 0.05, 0.35, 0.22])
1056
+ n_trials = 100
1057
+ expected = np.atleast_2d(n_trials * p).astype(int)
1058
+ base_engine = qmc.Sobol(1, scramble=True, rng=rng)
1059
+ engine = qmc.MultinomialQMC(p, n_trials=n_trials, engine=base_engine,
1060
+ rng=rng)
1061
+ assert_allclose(engine.random(1), expected, atol=1)
1062
+
1063
+
1064
+ class TestNormalQMC:
1065
+ def test_NormalQMC(self):
1066
+ # d = 1
1067
+ engine = qmc.MultivariateNormalQMC(mean=np.zeros(1))
1068
+ samples = engine.random()
1069
+ assert_equal(samples.shape, (1, 1))
1070
+ samples = engine.random(n=5)
1071
+ assert_equal(samples.shape, (5, 1))
1072
+ # d = 2
1073
+ engine = qmc.MultivariateNormalQMC(mean=np.zeros(2))
1074
+ samples = engine.random()
1075
+ assert_equal(samples.shape, (1, 2))
1076
+ samples = engine.random(n=5)
1077
+ assert_equal(samples.shape, (5, 2))
1078
+
1079
+ def test_NormalQMCInvTransform(self):
1080
+ # d = 1
1081
+ engine = qmc.MultivariateNormalQMC(
1082
+ mean=np.zeros(1), inv_transform=True)
1083
+ samples = engine.random()
1084
+ assert_equal(samples.shape, (1, 1))
1085
+ samples = engine.random(n=5)
1086
+ assert_equal(samples.shape, (5, 1))
1087
+ # d = 2
1088
+ engine = qmc.MultivariateNormalQMC(
1089
+ mean=np.zeros(2), inv_transform=True)
1090
+ samples = engine.random()
1091
+ assert_equal(samples.shape, (1, 2))
1092
+ samples = engine.random(n=5)
1093
+ assert_equal(samples.shape, (5, 2))
1094
+
1095
+ def test_NormalQMCSeeded(self):
1096
+ # test even dimension
1097
+ rng = np.random.default_rng(274600237797326520096085022671371676017)
1098
+ # preserve use of legacy keyword during SPEC 7 transition
1099
+ engine = qmc.MultivariateNormalQMC(
1100
+ mean=np.zeros(2), inv_transform=False, seed=rng)
1101
+ samples = engine.random(n=2)
1102
+ samples_expected = np.array([[-0.932001, -0.522923],
1103
+ [-1.477655, 0.846851]])
1104
+ assert_allclose(samples, samples_expected, atol=1e-4)
1105
+
1106
+ # test odd dimension
1107
+ rng = np.random.default_rng(274600237797326520096085022671371676017)
1108
+ engine = qmc.MultivariateNormalQMC(
1109
+ mean=np.zeros(3), inv_transform=False, rng=rng)
1110
+ samples = engine.random(n=2)
1111
+ samples_expected = np.array([[-0.932001, -0.522923, 0.036578],
1112
+ [-1.778011, 0.912428, -0.065421]])
1113
+ assert_allclose(samples, samples_expected, atol=1e-4)
1114
+
1115
+ # same test with another engine
1116
+ rng = np.random.default_rng(274600237797326520096085022671371676017)
1117
+ base_engine = qmc.Sobol(4, scramble=True, rng=rng)
1118
+ engine = qmc.MultivariateNormalQMC(
1119
+ mean=np.zeros(3), inv_transform=False,
1120
+ engine=base_engine, rng=rng
1121
+ )
1122
+ samples = engine.random(n=2)
1123
+ samples_expected = np.array([[-0.932001, -0.522923, 0.036578],
1124
+ [-1.778011, 0.912428, -0.065421]])
1125
+ assert_allclose(samples, samples_expected, atol=1e-4)
1126
+
1127
+ def test_NormalQMCSeededInvTransform(self):
1128
+ # test even dimension
1129
+ rng = np.random.default_rng(288527772707286126646493545351112463929)
1130
+ engine = qmc.MultivariateNormalQMC(
1131
+ mean=np.zeros(2), rng=rng, inv_transform=True)
1132
+ samples = engine.random(n=2)
1133
+ samples_expected = np.array([[-0.913237, -0.964026],
1134
+ [0.255904, 0.003068]])
1135
+ assert_allclose(samples, samples_expected, atol=1e-4)
1136
+
1137
+ # test odd dimension
1138
+ rng = np.random.default_rng(288527772707286126646493545351112463929)
1139
+ engine = qmc.MultivariateNormalQMC(
1140
+ mean=np.zeros(3), rng=rng, inv_transform=True)
1141
+ samples = engine.random(n=2)
1142
+ samples_expected = np.array([[-0.913237, -0.964026, 0.355501],
1143
+ [0.699261, 2.90213 , -0.6418]])
1144
+ assert_allclose(samples, samples_expected, atol=1e-4)
1145
+
1146
+ def test_other_engine(self):
1147
+ for d in (0, 1, 2):
1148
+ base_engine = qmc.Sobol(d=d, scramble=False)
1149
+ engine = qmc.MultivariateNormalQMC(mean=np.zeros(d),
1150
+ engine=base_engine,
1151
+ inv_transform=True)
1152
+ samples = engine.random()
1153
+ assert_equal(samples.shape, (1, d))
1154
+
1155
+ def test_NormalQMCShapiro(self):
1156
+ rng = np.random.default_rng(13242)
1157
+ engine = qmc.MultivariateNormalQMC(mean=np.zeros(2), rng=rng)
1158
+ samples = engine.random(n=256)
1159
+ assert all(np.abs(samples.mean(axis=0)) < 1e-2)
1160
+ assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
1161
+ # perform Shapiro-Wilk test for normality
1162
+ for i in (0, 1):
1163
+ _, pval = shapiro(samples[:, i])
1164
+ assert pval > 0.9
1165
+ # make sure samples are uncorrelated
1166
+ cov = np.cov(samples.transpose())
1167
+ assert np.abs(cov[0, 1]) < 1e-2
1168
+
1169
+ def test_NormalQMCShapiroInvTransform(self):
1170
+ rng = np.random.default_rng(32344554)
1171
+ engine = qmc.MultivariateNormalQMC(
1172
+ mean=np.zeros(2), inv_transform=True, rng=rng)
1173
+ samples = engine.random(n=256)
1174
+ assert all(np.abs(samples.mean(axis=0)) < 1e-2)
1175
+ assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
1176
+ # perform Shapiro-Wilk test for normality
1177
+ for i in (0, 1):
1178
+ _, pval = shapiro(samples[:, i])
1179
+ assert pval > 0.9
1180
+ # make sure samples are uncorrelated
1181
+ cov = np.cov(samples.transpose())
1182
+ assert np.abs(cov[0, 1]) < 1e-2
1183
+
1184
+
1185
+ class TestMultivariateNormalQMC:
1186
+
1187
+ def test_validations(self):
1188
+
1189
+ message = r"Dimension of `engine` must be consistent"
1190
+ with pytest.raises(ValueError, match=message):
1191
+ qmc.MultivariateNormalQMC([0], engine=qmc.Sobol(d=2))
1192
+
1193
+ message = r"Dimension of `engine` must be consistent"
1194
+ with pytest.raises(ValueError, match=message):
1195
+ qmc.MultivariateNormalQMC([0, 0, 0], engine=qmc.Sobol(d=4))
1196
+
1197
+ message = r"`engine` must be an instance of..."
1198
+ with pytest.raises(ValueError, match=message):
1199
+ qmc.MultivariateNormalQMC([0, 0], engine=np.random.default_rng())
1200
+
1201
+ message = r"Covariance matrix not PSD."
1202
+ with pytest.raises(ValueError, match=message):
1203
+ qmc.MultivariateNormalQMC([0, 0], [[1, 2], [2, 1]])
1204
+
1205
+ message = r"Covariance matrix is not symmetric."
1206
+ with pytest.raises(ValueError, match=message):
1207
+ qmc.MultivariateNormalQMC([0, 0], [[1, 0], [2, 1]])
1208
+
1209
+ message = r"Dimension mismatch between mean and covariance."
1210
+ with pytest.raises(ValueError, match=message):
1211
+ qmc.MultivariateNormalQMC([0], [[1, 0], [0, 1]])
1212
+
1213
+ def test_MultivariateNormalQMCNonPD(self):
1214
+ # try with non-pd but psd cov; should work
1215
+ engine = qmc.MultivariateNormalQMC(
1216
+ [0, 0, 0], [[1, 0, 1], [0, 1, 1], [1, 1, 2]],
1217
+ )
1218
+ assert engine._corr_matrix is not None
1219
+
1220
+ def test_MultivariateNormalQMC(self):
1221
+ # d = 1 scalar
1222
+ engine = qmc.MultivariateNormalQMC(mean=0, cov=5)
1223
+ samples = engine.random()
1224
+ assert_equal(samples.shape, (1, 1))
1225
+ samples = engine.random(n=5)
1226
+ assert_equal(samples.shape, (5, 1))
1227
+
1228
+ # d = 2 list
1229
+ engine = qmc.MultivariateNormalQMC(mean=[0, 1], cov=[[1, 0], [0, 1]])
1230
+ samples = engine.random()
1231
+ assert_equal(samples.shape, (1, 2))
1232
+ samples = engine.random(n=5)
1233
+ assert_equal(samples.shape, (5, 2))
1234
+
1235
+ # d = 3 np.array
1236
+ mean = np.array([0, 1, 2])
1237
+ cov = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
1238
+ engine = qmc.MultivariateNormalQMC(mean, cov)
1239
+ samples = engine.random()
1240
+ assert_equal(samples.shape, (1, 3))
1241
+ samples = engine.random(n=5)
1242
+ assert_equal(samples.shape, (5, 3))
1243
+
1244
+ def test_MultivariateNormalQMCInvTransform(self):
1245
+ # d = 1 scalar
1246
+ engine = qmc.MultivariateNormalQMC(mean=0, cov=5, inv_transform=True)
1247
+ samples = engine.random()
1248
+ assert_equal(samples.shape, (1, 1))
1249
+ samples = engine.random(n=5)
1250
+ assert_equal(samples.shape, (5, 1))
1251
+
1252
+ # d = 2 list
1253
+ engine = qmc.MultivariateNormalQMC(
1254
+ mean=[0, 1], cov=[[1, 0], [0, 1]], inv_transform=True,
1255
+ )
1256
+ samples = engine.random()
1257
+ assert_equal(samples.shape, (1, 2))
1258
+ samples = engine.random(n=5)
1259
+ assert_equal(samples.shape, (5, 2))
1260
+
1261
+ # d = 3 np.array
1262
+ mean = np.array([0, 1, 2])
1263
+ cov = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
1264
+ engine = qmc.MultivariateNormalQMC(mean, cov, inv_transform=True)
1265
+ samples = engine.random()
1266
+ assert_equal(samples.shape, (1, 3))
1267
+ samples = engine.random(n=5)
1268
+ assert_equal(samples.shape, (5, 3))
1269
+
1270
+ def test_MultivariateNormalQMCSeeded(self):
1271
+ # test even dimension
1272
+ rng = np.random.default_rng(180182791534511062935571481899241825000)
1273
+ a = rng.standard_normal((2, 2))
1274
+ A = a @ a.transpose() + np.diag(rng.random(2))
1275
+ engine = qmc.MultivariateNormalQMC(np.array([0, 0]), A,
1276
+ inv_transform=False, rng=rng)
1277
+ samples = engine.random(n=2)
1278
+ samples_expected = np.array([[-0.64419, -0.882413],
1279
+ [0.837199, 2.045301]])
1280
+ assert_allclose(samples, samples_expected, atol=1e-4)
1281
+
1282
+ # test odd dimension
1283
+ rng = np.random.default_rng(180182791534511062935571481899241825000)
1284
+ a = rng.standard_normal((3, 3))
1285
+ A = a @ a.transpose() + np.diag(rng.random(3))
1286
+ engine = qmc.MultivariateNormalQMC(np.array([0, 0, 0]), A,
1287
+ inv_transform=False, rng=rng)
1288
+ samples = engine.random(n=2)
1289
+ samples_expected = np.array([[-0.693853, -1.265338, -0.088024],
1290
+ [1.620193, 2.679222, 0.457343]])
1291
+ assert_allclose(samples, samples_expected, atol=1e-4)
1292
+
1293
+ def test_MultivariateNormalQMCSeededInvTransform(self):
1294
+ # test even dimension
1295
+ rng = np.random.default_rng(224125808928297329711992996940871155974)
1296
+ a = rng.standard_normal((2, 2))
1297
+ A = a @ a.transpose() + np.diag(rng.random(2))
1298
+ engine = qmc.MultivariateNormalQMC(
1299
+ np.array([0, 0]), A, rng=rng, inv_transform=True
1300
+ )
1301
+ samples = engine.random(n=2)
1302
+ samples_expected = np.array([[0.682171, -3.114233],
1303
+ [-0.098463, 0.668069]])
1304
+ assert_allclose(samples, samples_expected, atol=1e-4)
1305
+
1306
+ # test odd dimension
1307
+ rng = np.random.default_rng(224125808928297329711992996940871155974)
1308
+ a = rng.standard_normal((3, 3))
1309
+ A = a @ a.transpose() + np.diag(rng.random(3))
1310
+ engine = qmc.MultivariateNormalQMC(
1311
+ np.array([0, 0, 0]), A, rng=rng, inv_transform=True
1312
+ )
1313
+ samples = engine.random(n=2)
1314
+ samples_expected = np.array([[0.988061, -1.644089, -0.877035],
1315
+ [-1.771731, 1.096988, 2.024744]])
1316
+ assert_allclose(samples, samples_expected, atol=1e-4)
1317
+
1318
+ def test_MultivariateNormalQMCShapiro(self):
1319
+ # test the standard case
1320
+ rng = np.random.default_rng(188960007281846377164494575845971640)
1321
+ engine = qmc.MultivariateNormalQMC(
1322
+ mean=[0, 0], cov=[[1, 0], [0, 1]], rng=rng
1323
+ )
1324
+ samples = engine.random(n=256)
1325
+ assert all(np.abs(samples.mean(axis=0)) < 1e-2)
1326
+ assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
1327
+ # perform Shapiro-Wilk test for normality
1328
+ for i in (0, 1):
1329
+ _, pval = shapiro(samples[:, i])
1330
+ assert pval > 0.9
1331
+ # make sure samples are uncorrelated
1332
+ cov = np.cov(samples.transpose())
1333
+ assert np.abs(cov[0, 1]) < 1e-2
1334
+
1335
+ # test the correlated, non-zero mean case
1336
+ engine = qmc.MultivariateNormalQMC(
1337
+ mean=[1.0, 2.0], cov=[[1.5, 0.5], [0.5, 1.5]], rng=rng
1338
+ )
1339
+ samples = engine.random(n=256)
1340
+ assert all(np.abs(samples.mean(axis=0) - [1, 2]) < 1e-2)
1341
+ assert all(np.abs(samples.std(axis=0) - np.sqrt(1.5)) < 1e-2)
1342
+ # perform Shapiro-Wilk test for normality
1343
+ for i in (0, 1):
1344
+ _, pval = shapiro(samples[:, i])
1345
+ assert pval > 0.9
1346
+ # check covariance
1347
+ cov = np.cov(samples.transpose())
1348
+ assert np.abs(cov[0, 1] - 0.5) < 1e-2
1349
+
1350
+ def test_MultivariateNormalQMCShapiroInvTransform(self):
1351
+ # test the standard case
1352
+ rng = np.random.default_rng(200089821034563288698994840831440331329)
1353
+ engine = qmc.MultivariateNormalQMC(
1354
+ mean=[0, 0], cov=[[1, 0], [0, 1]], rng=rng, inv_transform=True
1355
+ )
1356
+ samples = engine.random(n=256)
1357
+ assert all(np.abs(samples.mean(axis=0)) < 1e-2)
1358
+ assert all(np.abs(samples.std(axis=0) - 1) < 1e-2)
1359
+ # perform Shapiro-Wilk test for normality
1360
+ for i in (0, 1):
1361
+ _, pval = shapiro(samples[:, i])
1362
+ assert pval > 0.9
1363
+ # make sure samples are uncorrelated
1364
+ cov = np.cov(samples.transpose())
1365
+ assert np.abs(cov[0, 1]) < 1e-2
1366
+
1367
+ # test the correlated, non-zero mean case
1368
+ engine = qmc.MultivariateNormalQMC(
1369
+ mean=[1.0, 2.0],
1370
+ cov=[[1.5, 0.5], [0.5, 1.5]],
1371
+ rng=rng,
1372
+ inv_transform=True,
1373
+ )
1374
+ samples = engine.random(n=256)
1375
+ assert all(np.abs(samples.mean(axis=0) - [1, 2]) < 1e-2)
1376
+ assert all(np.abs(samples.std(axis=0) - np.sqrt(1.5)) < 1e-2)
1377
+ # perform Shapiro-Wilk test for normality
1378
+ for i in (0, 1):
1379
+ _, pval = shapiro(samples[:, i])
1380
+ assert pval > 0.9
1381
+ # check covariance
1382
+ cov = np.cov(samples.transpose())
1383
+ assert np.abs(cov[0, 1] - 0.5) < 1e-2
1384
+
1385
+ def test_MultivariateNormalQMCDegenerate(self):
1386
+ # X, Y iid standard Normal and Z = X + Y, random vector (X, Y, Z)
1387
+ rng = np.random.default_rng(16320637417581448357869821654290448620)
1388
+ engine = qmc.MultivariateNormalQMC(
1389
+ mean=[0.0, 0.0, 0.0],
1390
+ cov=[[1.0, 0.0, 1.0], [0.0, 1.0, 1.0], [1.0, 1.0, 2.0]],
1391
+ rng=rng,
1392
+ )
1393
+ samples = engine.random(n=512)
1394
+ assert all(np.abs(samples.mean(axis=0)) < 1e-2)
1395
+ assert np.abs(np.std(samples[:, 0]) - 1) < 1e-2
1396
+ assert np.abs(np.std(samples[:, 1]) - 1) < 1e-2
1397
+ assert np.abs(np.std(samples[:, 2]) - np.sqrt(2)) < 1e-2
1398
+ for i in (0, 1, 2):
1399
+ _, pval = shapiro(samples[:, i])
1400
+ assert pval > 0.8
1401
+ cov = np.cov(samples.transpose())
1402
+ assert np.abs(cov[0, 1]) < 1e-2
1403
+ assert np.abs(cov[0, 2] - 1) < 1e-2
1404
+ # check to see if X + Y = Z almost exactly
1405
+ assert all(np.abs(samples[:, 0] + samples[:, 1] - samples[:, 2])
1406
+ < 1e-5)
1407
+
1408
+
1409
+ class TestLloyd:
1410
+ def test_lloyd(self):
1411
+ # quite sensible seed as it can go up before going further down
1412
+ rng = np.random.RandomState(1809831)
1413
+ sample = rng.uniform(0, 1, size=(128, 2))
1414
+ base_l1 = _l1_norm(sample)
1415
+ base_l2 = l2_norm(sample)
1416
+
1417
+ for _ in range(4):
1418
+ sample_lloyd = _lloyd_centroidal_voronoi_tessellation(
1419
+ sample, maxiter=1,
1420
+ )
1421
+ curr_l1 = _l1_norm(sample_lloyd)
1422
+ curr_l2 = l2_norm(sample_lloyd)
1423
+
1424
+ # higher is better for the distance measures
1425
+ assert base_l1 < curr_l1
1426
+ assert base_l2 < curr_l2
1427
+
1428
+ base_l1 = curr_l1
1429
+ base_l2 = curr_l2
1430
+
1431
+ sample = sample_lloyd
1432
+
1433
+ def test_lloyd_non_mutating(self):
1434
+ """
1435
+ Verify that the input samples are not mutated in place and that they do
1436
+ not share memory with the output.
1437
+ """
1438
+ sample_orig = np.array([[0.1, 0.1],
1439
+ [0.1, 0.2],
1440
+ [0.2, 0.1],
1441
+ [0.2, 0.2]])
1442
+ sample_copy = sample_orig.copy()
1443
+ new_sample = _lloyd_centroidal_voronoi_tessellation(
1444
+ sample=sample_orig
1445
+ )
1446
+ assert_allclose(sample_orig, sample_copy)
1447
+ assert not np.may_share_memory(sample_orig, new_sample)
1448
+
1449
+ def test_lloyd_errors(self):
1450
+ with pytest.raises(ValueError, match=r"`sample` is not a 2D array"):
1451
+ sample = [0, 1, 0.5]
1452
+ _lloyd_centroidal_voronoi_tessellation(sample)
1453
+
1454
+ msg = r"`sample` dimension is not >= 2"
1455
+ with pytest.raises(ValueError, match=msg):
1456
+ sample = [[0], [0.4], [1]]
1457
+ _lloyd_centroidal_voronoi_tessellation(sample)
1458
+
1459
+ msg = r"`sample` is not in unit hypercube"
1460
+ with pytest.raises(ValueError, match=msg):
1461
+ sample = [[-1.1, 0], [0.1, 0.4], [1, 2]]
1462
+ _lloyd_centroidal_voronoi_tessellation(sample)
1463
+
1464
+
1465
+ # mindist
1466
+ def l2_norm(sample):
1467
+ return distance.pdist(sample).min()
1468
+
1469
+
1470
+ @pytest.mark.parametrize('engine', [qmc.Halton, qmc.Sobol,
1471
+ qmc.LatinHypercube, qmc.PoissonDisk])
1472
+ def test_deterministic(engine):
1473
+ seed_number = 2359834584
1474
+
1475
+ rng = np.random.RandomState(seed_number)
1476
+ res1 = engine(d=1, seed=rng).random(4)
1477
+ rng = np.random.RandomState(seed_number)
1478
+ res2 = engine(d=1, seed=rng).random(4)
1479
+ assert_equal(res1, res2)
1480
+
1481
+ rng = np.random.default_rng(seed_number)
1482
+ res1 = engine(d=1, seed=rng).random(4)
1483
+ res2 = engine(d=1, rng=seed_number).random(4)
1484
+ assert_equal(res1, res2)
1485
+ rng = np.random.default_rng(seed_number)
1486
+ res3 = engine(d=1, rng=rng).random(4)
1487
+ assert_equal(res2, res1)
1488
+ assert_equal(res3, res1)
1489
+
1490
+ message = "got multiple values for argument now known as `rng`"
1491
+ with pytest.raises(TypeError, match=message):
1492
+ engine(d=1, rng=seed_number, seed=seed_number)