scipy 1.16.2__cp314-cp314-win_arm64.whl

scipy/spatial/distance.pyi

@@ -0,0 +1,210 @@
+from typing import (overload, Any, SupportsFloat, Literal, Protocol, SupportsIndex)
+
+import numpy as np
+from numpy.typing import ArrayLike, NDArray
+
+# Anything that can be parsed by `np.float64.__init__` and is thus
+# compatible with `ndarray.__setitem__` (for a float64 array)
+_FloatValue = None | str | bytes | SupportsFloat | SupportsIndex
+
+class _MetricCallback1(Protocol):
+    def __call__(
+        self, __XA: NDArray[Any], __XB: NDArray[Any]
+    ) -> _FloatValue: ...
+
+class _MetricCallback2(Protocol):
+    def __call__(
+        self, __XA: NDArray[Any], __XB: NDArray[Any], **kwargs: Any
+    ) -> _FloatValue: ...
+
+# TODO: Use a single protocol with a parameter specification variable
+# once available (PEP 612)
+_MetricCallback = _MetricCallback1 | _MetricCallback2
+
+_MetricKind = Literal[
+    'braycurtis',
+    'canberra',
+    'chebychev', 'chebyshev', 'cheby', 'cheb', 'ch',
+    'cityblock', 'cblock', 'cb', 'c',
+    'correlation', 'co',
+    'cosine', 'cos',
+    'dice',
+    'euclidean', 'euclid', 'eu', 'e',
+    'hamming', 'hamm', 'ha', 'h',
+    'minkowski', 'mi', 'm', 'pnorm',
+    'jaccard', 'jacc', 'ja', 'j',
+    'jensenshannon', 'js',
+    'kulczynski1',
+    'mahalanobis', 'mahal', 'mah',
+    'rogerstanimoto',
+    'russellrao',
+    'seuclidean', 'se', 's',
+    'sokalmichener',
+    'sokalsneath',
+    'sqeuclidean', 'sqe', 'sqeuclid',
+    'yule',
+]
+
+# Function annotations
+
+def braycurtis(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def canberra(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+# TODO: Add `metric`-specific overloads
+# Returns a float64 or float128 array, depending on the input dtype
+@overload
+def cdist(
+    XA: ArrayLike,
+    XB: ArrayLike,
+    metric: _MetricKind = ...,
+    *,
+    out: None | NDArray[np.floating[Any]] = ...,
+    p: float = ...,
+    w: ArrayLike | None = ...,
+    V: ArrayLike | None = ...,
+    VI: ArrayLike | None = ...,
+) -> NDArray[np.floating[Any]]: ...
+@overload
+def cdist(
+    XA: ArrayLike,
+    XB: ArrayLike,
+    metric: _MetricCallback,
+    *,
+    out: None | NDArray[np.floating[Any]] = ...,
+    **kwargs: Any,
+) -> NDArray[np.floating[Any]]: ...
+
+# TODO: Wait for dtype support; the return type is
+# dependent on the input arrays dtype
+def chebyshev(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> Any: ...
+
+# TODO: Wait for dtype support; the return type is
+# dependent on the input arrays dtype
+def cityblock(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> Any: ...
+
+def correlation(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ..., centered: bool = ...
+) -> np.float64: ...
+
+def cosine(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def dice(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...
+
+def directed_hausdorff(
+    u: ArrayLike, v: ArrayLike, seed: int | None = ...
+) -> tuple[float, int, int]: ...
+
+def euclidean(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...
+
+def hamming(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def is_valid_dm(
+    D: ArrayLike,
+    tol: float = ...,
+    throw: bool = ...,
+    name: str | None = ...,
+    warning: bool = ...,
+) -> bool: ...
+
+def is_valid_y(
+    y: ArrayLike,
+    warning: bool = ...,
+    throw: bool = ...,
+    name: str | None = ...,
+) -> bool: ...
+
+def jaccard(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def jensenshannon(
+    p: ArrayLike, q: ArrayLike, base: float | None = ...
+) -> np.float64: ...
+
+def kulczynski1(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def mahalanobis(
+    u: ArrayLike, v: ArrayLike, VI: ArrayLike
+) -> np.float64: ...
+
+def minkowski(
+    u: ArrayLike, v: ArrayLike, p: float = ..., w: ArrayLike | None = ...
+) -> float: ...
+
+def num_obs_dm(d: ArrayLike) -> int: ...
+
+def num_obs_y(Y: ArrayLike) -> int: ...
+
+# TODO: Add `metric`-specific overloads
+@overload
+def pdist(
+    X: ArrayLike,
+    metric: _MetricKind = ...,
+    *,
+    out: None | NDArray[np.floating[Any]] = ...,
+    p: float = ...,
+    w: ArrayLike | None = ...,
+    V: ArrayLike | None = ...,
+    VI: ArrayLike | None = ...,
+) -> NDArray[np.floating[Any]]: ...
+@overload
+def pdist(
+    X: ArrayLike,
+    metric: _MetricCallback,
+    *,
+    out: None | NDArray[np.floating[Any]] = ...,
+    **kwargs: Any,
+) -> NDArray[np.floating[Any]]: ...
+
+def seuclidean(
+    u: ArrayLike, v: ArrayLike, V: ArrayLike
+) -> float: ...
+
+def sokalmichener(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...
+
+def sokalsneath(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def sqeuclidean(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> np.float64: ...
+
+def squareform(
+    X: ArrayLike,
+    force: Literal["no", "tomatrix", "tovector"] = ...,
+    checks: bool = ...,
+) -> NDArray[Any]: ...
+
+def rogerstanimoto(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...
+
+def russellrao(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...
+
+def yule(
+    u: ArrayLike, v: ArrayLike, w: ArrayLike | None = ...
+) -> float: ...

scipy/spatial/kdtree.py

@@ -0,0 +1,25 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.spatial` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'KDTree',
+    'Rectangle',
+    'cKDTree',
+    'distance_matrix',
+    'minkowski_distance',
+    'minkowski_distance_p',
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="spatial", module="kdtree",
+                                   private_modules=["_kdtree"], all=__all__,
+                                   attribute=name)

scipy/spatial/qhull.py

@@ -0,0 +1,25 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.spatial` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'ConvexHull',
+    'Delaunay',
+    'HalfspaceIntersection',
+    'QhullError',
+    'Voronoi',
+    'tsearch',
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="spatial", module="qhull",
+                                   private_modules=["_qhull"], all=__all__,
+                                   attribute=name)

scipy/spatial/qhull_src/COPYING_QHULL.txt

@@ -0,0 +1,39 @@
+                    Qhull, Copyright (c) 1993-2020
+                    
+                            C.B. Barber
+                           Arlington, MA 
+                          
+                               and
+
+       The National Science and Technology Research Center for
+        Computation and Visualization of Geometric Structures
+                        (The Geometry Center)
+                       University of Minnesota
+
+                       email: qhull@qhull.org
+
+This software includes Qhull from C.B. Barber and The Geometry Center.  
+Files derived from Qhull 1.0 are copyrighted by the Geometry Center.  The
+remaining files are copyrighted by C.B. Barber.  Qhull is free software 
+and may be obtained via http from www.qhull.org.  It may be freely copied, 
+modified, and redistributed under the following conditions:
+
+1. All copyright notices must remain intact in all files.
+
+2. A copy of this text file must be distributed along with any copies 
+   of Qhull that you redistribute; this includes copies that you have 
+   modified, or copies of programs or other software products that 
+   include Qhull.
+
+3. If you modify Qhull, you must include a notice giving the
+   name of the person performing the modification, the date of
+   modification, and the reason for such modification.
+
+4. When distributing modified versions of Qhull, or other software 
+   products that include Qhull, you must provide notice that the original 
+   source code may be obtained as noted above.
+
+5. There is no warranty or other guarantee of fitness for Qhull, it is 
+   provided solely "as is".  Bug reports or fixes may be sent to 
+   qhull_bug@qhull.org; the authors may or may not act on them as 
+   they desire.

scipy/spatial/tests/data/cdist-X1.txt

@@ -0,0 +1,10 @@
+1.147593763490969421e-01 8.926156143344999849e-01 1.437758624645746330e-02 1.803435962879929022e-02 5.533046214065578949e-01 5.554315640747428118e-01 4.497546637814608950e-02 4.438089247948049376e-01 7.984582810220538507e-01 2.752880789161644692e-01 1.344667112315823809e-01 9.230479561452992199e-01 6.040471462941819913e-01 3.797251652770228247e-01 4.316042735592399149e-01 5.312356915348823705e-01 4.348143005129563310e-01 3.111531488508799681e-01 9.531194313908697424e-04 8.212995023500069269e-02 6.689953269869852726e-01 9.914864535288493430e-01 8.037556036341153565e-01
+9.608925123801395074e-01 2.974451233678974127e-01 9.001110330654185088e-01 5.824163330415995654e-01 7.308574928293812834e-01 2.276154562412870952e-01 7.306791076039623745e-01 8.677244866905511333e-01 9.160806456176984192e-01 6.157216959991280714e-01 5.149053524695440531e-01 3.056427344890983999e-01 9.790557366933895223e-01 4.484995861076724877e-01 4.776550391081165747e-01 7.210436977670631187e-01 9.136399501661039979e-01 4.260275733550000776e-02 5.943900041968954717e-01 3.864571606342745991e-01 9.442027665110838131e-01 4.779949058608601309e-02 6.107551944250865228e-01
+3.297286578103622023e-01 5.980207401936733502e-01 3.673301293561567205e-01 2.585830520887681949e-01 4.660558746104259686e-01 6.083795956610364986e-01 4.535206368070313632e-01 6.873989778785424276e-01 5.130152688495458468e-01 7.665877846542720198e-01 3.444402973525138023e-01 3.583658123644906102e-02 7.924818220986856732e-01 8.746685720522412444e-01 3.010105569182431884e-01 6.012239357385538163e-01 6.233737362204671006e-01 4.830438698668915176e-01 2.317286885842551047e-02 7.585989958123050547e-01 7.108257632278830451e-01 1.551024884178199281e-01 2.665485998155288083e-01
+2.456278068903017253e-02 4.148739837711815648e-01 1.986372227934196655e-01 6.920408530298168825e-01 1.003067576685774398e-01 7.421560456480125190e-01 1.808453980608998313e-01 4.251297882537475870e-01 6.773002683522370004e-01 4.084108792570182445e-01 7.462888013191590897e-01 8.069930220529277776e-01 9.211110587681808903e-01 4.141491046181076108e-01 7.486318689260342829e-01 9.515405507589296263e-01 4.634288892577109742e-03 8.027593488166355762e-01 3.010346805217798405e-01 8.663248877242523127e-01 2.479968181181605447e-01 5.619851096054278017e-01 3.903886764590250857e-01
+7.122019976035700584e-01 6.188878051047785878e-01 7.290897087051201320e-01 6.334802157757637442e-01 5.523084734954342156e-01 5.614937129563645213e-01 2.496741051791574462e-01 5.972227939599233926e-01 1.786590597761109622e-01 2.609525984850900038e-01 7.210438943286010538e-01 2.211429064605652250e-01 9.140497572472672250e-02 1.430242193668443962e-01 7.856446942916397447e-01 4.635256358156553125e-01 5.278744289813760426e-01 3.702808015407184072e-01 5.527073830480792038e-01 6.370732917599846168e-01 9.953487928925482953e-01 3.021789770611936765e-01 3.354901923998221402e-02
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+6.527328264244687261e-01 8.289483383553154505e-01 9.179741348282299818e-01 1.065639864466713105e-01 6.253616929058514184e-01 5.927750325266062381e-01 3.039157425463192563e-01 2.452766763359194302e-01 6.514027700704632107e-01 5.529218485487964463e-01 4.941158239308394151e-01 6.605306467722642516e-01 2.273688037050677346e-01 4.282616592244774534e-01 2.956128257930247250e-01 1.154803628237965896e-01 9.228220410235263849e-01 6.663525307676617659e-01 1.908852615936970087e-01 9.921383408926374159e-01 4.988716450388516188e-01 1.014900352736023414e-01 3.363930180244284474e-01
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+2.075071644012620453e-01 4.834950086973934802e-01 3.037011473860764532e-01 6.476084284887700937e-01 8.107195771564194020e-01 7.869075869075803364e-01 6.851234019375299633e-01 3.544187468104398331e-02 4.847673235908021017e-01 5.690262846164507726e-01 1.663354142616256803e-01 9.692796809752548537e-01 4.133441725866372485e-01 6.729167604487583665e-01 3.998813427407297283e-01 8.272617414104491695e-01 2.129248316324727774e-01 6.517004761357130249e-01 7.363013506605019520e-01 4.072375306356985636e-01 4.463336683526665238e-01 5.485059309728204102e-01 1.981745754527846071e-01

scipy/spatial/tests/data/cdist-X2.txt

@@ -0,0 +1,20 @@
+7.680465556300619667e-02 4.675022344069014180e-01 8.955498989131543963e-01 3.816236071436276411e-01 1.109030077070989329e-01 2.318928815459808668e-02 7.477394240984251983e-01 1.202289789304434864e-01 8.007290497575981769e-01 6.795195698871731027e-01 6.568225762396605605e-01 2.231475263228478445e-01 7.064624077661341151e-02 1.081656666815267176e-02 1.592069359090128033e-01 1.363392203645097389e-01 9.277020735447568667e-01 8.103136564528209407e-01 5.229467676276455812e-02 7.708020259874025504e-01 6.527954747473352359e-02 5.516397414886525796e-01 3.653371861367954443e-01
+8.144399106025798085e-01 7.731852525462976633e-01 6.909477620673205589e-01 9.696063817000286633e-01 4.297887511677249694e-01 6.989600553425188156e-01 7.310201335033380543e-01 3.135256147868910048e-01 5.715578037275241829e-01 3.935000744675094531e-01 2.057715781268398825e-01 5.892508589665171881e-01 8.512951599236765476e-01 9.569808799061578775e-01 6.164885878024699561e-01 4.714185430004367294e-01 6.128831737628155363e-01 6.641799309623502845e-01 6.001985185338730711e-01 4.231922889723856995e-01 7.605249308075449077e-01 1.064530958018087281e-01 6.306470691957204444e-01
+4.265470127256254518e-01 5.933766716280767239e-01 3.698589270536845053e-02 2.173799740537294412e-01 3.032679325475639009e-01 4.271831790058847611e-01 1.828944535901013690e-01 4.772333422710156592e-01 2.564773455194128138e-01 7.120329875362141347e-01 8.952243430110462530e-01 1.808777012183288013e-01 3.612151871458374464e-01 3.960999167923041631e-01 1.821669970670747318e-02 8.835474857189200559e-01 1.353104648821573663e-01 3.457291739160937016e-01 1.126467375304566199e-01 4.107293162402323450e-01 4.051719311053743056e-01 4.007382985250427243e-01 1.286905671428811848e-01
+2.910657003883979632e-01 9.616259180685315933e-03 2.033032441536681834e-01 1.096599110293863255e-01 4.191101704605176836e-01 5.462131536027151624e-01 8.393047907010142694e-01 9.046805198676335369e-01 7.009863472176891541e-01 2.508215985039629059e-01 6.754410796667598138e-01 6.740895474032024826e-01 1.358993708621679675e-01 8.219861775211464439e-01 6.322220445623235596e-01 2.766813559002430090e-01 6.575983861590951607e-01 9.515869708336625044e-01 8.654526462353933081e-01 3.450245117834797037e-01 5.649032890631299209e-01 4.717687914789682191e-01 3.296483580510030098e-01
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