scipy 1.16.2__cp314-cp314-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp314-win_arm64.lib +0 -0
- scipy/_cyutility.cp314-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp314-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp314-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp314-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp314-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp314-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp314-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp314-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp314-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp314-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp314-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp314-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp314-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp314-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp314-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp314-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp314-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
- scipy/fftpack/_helper.py +115 -0
- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp314-win_arm64.lib +0 -0
- scipy/fftpack/convolve.cp314-win_arm64.pyd +0 -0
- scipy/fftpack/helper.py +19 -0
- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
- scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
- scipy/fftpack/tests/test.npz +0 -0
- scipy/fftpack/tests/test_basic.py +877 -0
- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp314-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp314-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp314-win_arm64.lib +0 -0
- scipy/integrate/_odepack.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_odepack_py.py +273 -0
- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp314-win_arm64.lib +0 -0
- scipy/integrate/_quadpack.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +1283 -0
- scipy/integrate/_quadrature.py +1336 -0
- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp314-win_arm64.lib +0 -0
- scipy/integrate/_test_multivariate.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp314-win_arm64.lib +0 -0
- scipy/integrate/_test_odeint_banded.cp314-win_arm64.pyd +0 -0
- scipy/integrate/_vode.cp314-win_arm64.lib +0 -0
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- scipy/integrate/lsoda.py +15 -0
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- scipy/integrate/quadpack.py +23 -0
- scipy/integrate/tests/__init__.py +0 -0
- scipy/integrate/tests/test__quad_vec.py +211 -0
- scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
- scipy/integrate/tests/test_bvp.py +714 -0
- scipy/integrate/tests/test_cubature.py +1375 -0
- scipy/integrate/tests/test_integrate.py +840 -0
- scipy/integrate/tests/test_odeint_jac.py +74 -0
- scipy/integrate/tests/test_quadpack.py +680 -0
- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
- scipy/interpolate/_bary_rational.py +715 -0
- scipy/interpolate/_bsplines.py +2469 -0
- scipy/interpolate/_cubic.py +973 -0
- scipy/interpolate/_dfitpack.cp314-win_arm64.lib +0 -0
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- scipy/io/_fast_matrix_market/__init__.py +600 -0
- scipy/io/_fast_matrix_market/_fmm_core.cp314-win_arm64.lib +0 -0
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- scipy/io/_harwell_boeing/__init__.py +7 -0
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"""
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Unit tests for the differential global minimization algorithm.
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"""
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import multiprocessing
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from multiprocessing.dummy import Pool as ThreadPool
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import platform
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from scipy.optimize._differentialevolution import (DifferentialEvolutionSolver,
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_ConstraintWrapper)
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from scipy.optimize import differential_evolution, OptimizeResult
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from scipy.optimize._constraints import (Bounds, NonlinearConstraint,
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LinearConstraint)
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from scipy.optimize import rosen, minimize
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from scipy.sparse import csr_array
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from scipy import stats
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import numpy as np
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from numpy.testing import (assert_equal, assert_allclose, assert_almost_equal,
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assert_string_equal, assert_, suppress_warnings)
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from pytest import raises as assert_raises, warns
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import pytest
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class TestDifferentialEvolutionSolver:
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def setup_method(self):
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self.old_seterr = np.seterr(invalid='raise')
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self.limits = np.array([[0., 0.],
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[2., 2.]])
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self.bounds = [(0., 2.), (0., 2.)]
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self.dummy_solver = DifferentialEvolutionSolver(self.quadratic,
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[(0, 100)])
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# dummy_solver2 will be used to test mutation strategies
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self.dummy_solver2 = DifferentialEvolutionSolver(self.quadratic,
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[(0, 1)],
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popsize=7,
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mutation=0.5)
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# create a population that's only 7 members long
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# [0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7]
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population = np.atleast_2d(np.arange(0.1, 0.8, 0.1)).T
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self.dummy_solver2.population = population
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def teardown_method(self):
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np.seterr(**self.old_seterr)
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def quadratic(self, x):
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return x[0]**2
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def test__strategy_resolves(self):
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# test that the correct mutation function is resolved by
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# different requested strategy arguments
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='best1exp')
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assert_equal(solver.strategy, 'best1exp')
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assert_equal(solver.mutation_func.__name__, '_best1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='best1bin')
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assert_equal(solver.strategy, 'best1bin')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='rand1bin')
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assert_equal(solver.strategy, 'rand1bin')
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assert_equal(solver.mutation_func.__name__, '_rand1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='rand1exp')
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assert_equal(solver.strategy, 'rand1exp')
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assert_equal(solver.mutation_func.__name__, '_rand1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='rand2exp')
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assert_equal(solver.strategy, 'rand2exp')
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self.bounds,
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strategy='best2bin')
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assert_equal(solver.strategy, 'best2bin')
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assert_equal(solver.mutation_func.__name__, '_best2')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='rand2bin')
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assert_equal(solver.strategy, 'rand2bin')
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assert_equal(solver.mutation_func.__name__, '_rand2')
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self.bounds,
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strategy='rand2exp')
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assert_equal(solver.strategy, 'rand2exp')
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assert_equal(solver.mutation_func.__name__, '_rand2')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='randtobest1bin')
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assert_equal(solver.strategy, 'randtobest1bin')
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assert_equal(solver.mutation_func.__name__, '_randtobest1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='randtobest1exp')
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assert_equal(solver.strategy, 'randtobest1exp')
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assert_equal(solver.mutation_func.__name__, '_randtobest1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='currenttobest1bin')
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assert_equal(solver.strategy, 'currenttobest1bin')
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assert_equal(solver.mutation_func.__name__, '_currenttobest1')
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solver = DifferentialEvolutionSolver(rosen,
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self.bounds,
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strategy='currenttobest1exp')
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assert_equal(solver.strategy, 'currenttobest1exp')
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assert_equal(solver.mutation_func.__name__, '_currenttobest1')
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def test__mutate1(self):
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# strategies */1/*, i.e. rand/1/bin, best/1/exp, etc.
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result = np.array([0.05])
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trial = self.dummy_solver2._best1(np.array([2, 3, 4, 5, 6]))
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assert_allclose(trial, result)
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result = np.array([0.25])
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trial = self.dummy_solver2._rand1(np.array([2, 3, 4, 5, 6]))
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assert_allclose(trial, result)
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def test__mutate2(self):
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# strategies */2/*, i.e. rand/2/bin, best/2/exp, etc.
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# [0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7]
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result = np.array([-0.1])
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trial = self.dummy_solver2._best2(np.array([2, 3, 4, 5, 6]))
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assert_allclose(trial, result)
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result = np.array([0.1])
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trial = self.dummy_solver2._rand2(np.array([2, 3, 4, 5, 6]))
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assert_allclose(trial, result)
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def test__randtobest1(self):
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149
|
+
# strategies randtobest/1/*
|
150
|
+
result = np.array([0.15])
|
151
|
+
trial = self.dummy_solver2._randtobest1(np.array([2, 3, 4, 5, 6]))
|
152
|
+
assert_allclose(trial, result)
|
153
|
+
|
154
|
+
def test__currenttobest1(self):
|
155
|
+
# strategies currenttobest/1/*
|
156
|
+
result = np.array([0.1])
|
157
|
+
trial = self.dummy_solver2._currenttobest1(
|
158
|
+
1,
|
159
|
+
np.array([2, 3, 4, 5, 6])
|
160
|
+
)
|
161
|
+
assert_allclose(trial, result)
|
162
|
+
|
163
|
+
def test_can_init_with_dithering(self):
|
164
|
+
mutation = (0.5, 1)
|
165
|
+
solver = DifferentialEvolutionSolver(self.quadratic,
|
166
|
+
self.bounds,
|
167
|
+
mutation=mutation)
|
168
|
+
|
169
|
+
assert_equal(solver.dither, list(mutation))
|
170
|
+
|
171
|
+
def test_invalid_mutation_values_arent_accepted(self):
|
172
|
+
func = rosen
|
173
|
+
mutation = (0.5, 3)
|
174
|
+
assert_raises(ValueError,
|
175
|
+
DifferentialEvolutionSolver,
|
176
|
+
func,
|
177
|
+
self.bounds,
|
178
|
+
mutation=mutation)
|
179
|
+
|
180
|
+
mutation = (-1, 1)
|
181
|
+
assert_raises(ValueError,
|
182
|
+
DifferentialEvolutionSolver,
|
183
|
+
func,
|
184
|
+
self.bounds,
|
185
|
+
mutation=mutation)
|
186
|
+
|
187
|
+
mutation = (0.1, np.nan)
|
188
|
+
assert_raises(ValueError,
|
189
|
+
DifferentialEvolutionSolver,
|
190
|
+
func,
|
191
|
+
self.bounds,
|
192
|
+
mutation=mutation)
|
193
|
+
|
194
|
+
mutation = 0.5
|
195
|
+
solver = DifferentialEvolutionSolver(func,
|
196
|
+
self.bounds,
|
197
|
+
mutation=mutation)
|
198
|
+
assert_equal(0.5, solver.scale)
|
199
|
+
assert_equal(None, solver.dither)
|
200
|
+
|
201
|
+
def test_invalid_functional(self):
|
202
|
+
def func(x):
|
203
|
+
return np.array([np.sum(x ** 2), np.sum(x)])
|
204
|
+
|
205
|
+
with assert_raises(
|
206
|
+
RuntimeError,
|
207
|
+
match=r"func\(x, \*args\) must return a scalar value"):
|
208
|
+
differential_evolution(func, [(-2, 2), (-2, 2)])
|
209
|
+
|
210
|
+
def test__scale_parameters(self):
|
211
|
+
trial = np.array([0.3])
|
212
|
+
assert_equal(30, self.dummy_solver._scale_parameters(trial))
|
213
|
+
|
214
|
+
# it should also work with the limits reversed
|
215
|
+
self.dummy_solver.limits = np.array([[100], [0.]])
|
216
|
+
assert_equal(30, self.dummy_solver._scale_parameters(trial))
|
217
|
+
|
218
|
+
def test__unscale_parameters(self):
|
219
|
+
trial = np.array([30])
|
220
|
+
assert_equal(0.3, self.dummy_solver._unscale_parameters(trial))
|
221
|
+
|
222
|
+
# it should also work with the limits reversed
|
223
|
+
self.dummy_solver.limits = np.array([[100], [0.]])
|
224
|
+
assert_equal(0.3, self.dummy_solver._unscale_parameters(trial))
|
225
|
+
|
226
|
+
def test_equal_bounds(self):
|
227
|
+
with np.errstate(invalid='raise'):
|
228
|
+
solver = DifferentialEvolutionSolver(
|
229
|
+
self.quadratic,
|
230
|
+
bounds=[(2.0, 2.0), (1.0, 3.0)]
|
231
|
+
)
|
232
|
+
v = solver._unscale_parameters([2.0, 2.0])
|
233
|
+
assert_allclose(v, 0.5)
|
234
|
+
|
235
|
+
res = differential_evolution(self.quadratic, [(2.0, 2.0), (3.0, 3.0)])
|
236
|
+
assert_equal(res.x, [2.0, 3.0])
|
237
|
+
|
238
|
+
def test__ensure_constraint(self):
|
239
|
+
trial = np.array([1.1, -100, 0.9, 2., 300., -0.00001])
|
240
|
+
self.dummy_solver._ensure_constraint(trial)
|
241
|
+
|
242
|
+
assert_equal(trial[2], 0.9)
|
243
|
+
assert_(np.logical_and(trial >= 0, trial <= 1).all())
|
244
|
+
|
245
|
+
def test_differential_evolution(self):
|
246
|
+
# test that the Jmin of DifferentialEvolutionSolver
|
247
|
+
# is the same as the function evaluation
|
248
|
+
solver = DifferentialEvolutionSolver(
|
249
|
+
self.quadratic, [(-2, 2)], maxiter=1, polish=False
|
250
|
+
)
|
251
|
+
result = solver.solve()
|
252
|
+
assert_equal(result.fun, self.quadratic(result.x))
|
253
|
+
|
254
|
+
solver = DifferentialEvolutionSolver(
|
255
|
+
self.quadratic, [(-2, 2)], maxiter=1, polish=True
|
256
|
+
)
|
257
|
+
result = solver.solve()
|
258
|
+
assert_equal(result.fun, self.quadratic(result.x))
|
259
|
+
|
260
|
+
def test_best_solution_retrieval(self):
|
261
|
+
# test that the getter property method for the best solution works.
|
262
|
+
solver = DifferentialEvolutionSolver(self.quadratic, [(-2, 2)])
|
263
|
+
result = solver.solve()
|
264
|
+
assert_equal(result.x, solver.x)
|
265
|
+
|
266
|
+
def test_intermediate_result(self):
|
267
|
+
# Check that intermediate result object passed into the callback
|
268
|
+
# function contains the expected information and that raising
|
269
|
+
# `StopIteration` causes the expected behavior.
|
270
|
+
maxiter = 10
|
271
|
+
|
272
|
+
def func(x):
|
273
|
+
val = rosen(x)
|
274
|
+
if val < func.val:
|
275
|
+
func.x = x
|
276
|
+
func.val = val
|
277
|
+
return val
|
278
|
+
func.x = None
|
279
|
+
func.val = np.inf
|
280
|
+
|
281
|
+
def callback(intermediate_result):
|
282
|
+
callback.nit += 1
|
283
|
+
callback.intermediate_result = intermediate_result
|
284
|
+
assert intermediate_result.population.ndim == 2
|
285
|
+
assert intermediate_result.population.shape[1] == 2
|
286
|
+
assert intermediate_result.nit == callback.nit
|
287
|
+
|
288
|
+
# Check that `x` and `fun` attributes are the best found so far
|
289
|
+
assert_equal(intermediate_result.x, callback.func.x)
|
290
|
+
assert_equal(intermediate_result.fun, callback.func.val)
|
291
|
+
|
292
|
+
# Check for consistency between `fun`, `population_energies`,
|
293
|
+
# `x`, and `population`
|
294
|
+
assert_equal(intermediate_result.fun, rosen(intermediate_result.x))
|
295
|
+
for i in range(len(intermediate_result.population_energies)):
|
296
|
+
res = intermediate_result.population_energies[i]
|
297
|
+
ref = rosen(intermediate_result.population[i])
|
298
|
+
assert_equal(res, ref)
|
299
|
+
assert_equal(intermediate_result.x,
|
300
|
+
intermediate_result.population[0])
|
301
|
+
assert_equal(intermediate_result.fun,
|
302
|
+
intermediate_result.population_energies[0])
|
303
|
+
|
304
|
+
assert intermediate_result.message == 'in progress'
|
305
|
+
assert intermediate_result.success is True
|
306
|
+
assert isinstance(intermediate_result, OptimizeResult)
|
307
|
+
if callback.nit == maxiter:
|
308
|
+
raise StopIteration
|
309
|
+
callback.nit = 0
|
310
|
+
callback.intermediate_result = None
|
311
|
+
callback.func = func
|
312
|
+
|
313
|
+
bounds = [(0, 2), (0, 2)]
|
314
|
+
kwargs = dict(func=func, bounds=bounds, rng=838245, polish=False)
|
315
|
+
res = differential_evolution(**kwargs, callback=callback)
|
316
|
+
ref = differential_evolution(**kwargs, maxiter=maxiter)
|
317
|
+
|
318
|
+
# Check that final `intermediate_result` is equivalent to returned
|
319
|
+
# result object and that terminating with callback `StopIteration`
|
320
|
+
# after `maxiter` iterations is equivalent to terminating with
|
321
|
+
# `maxiter` parameter.
|
322
|
+
assert res.success is ref.success is False
|
323
|
+
assert callback.nit == res.nit == maxiter
|
324
|
+
assert res.message == 'callback function requested stop early'
|
325
|
+
assert ref.message == 'Maximum number of iterations has been exceeded.'
|
326
|
+
for field, val in ref.items():
|
327
|
+
if field in {'message', 'success'}: # checked separately
|
328
|
+
continue
|
329
|
+
assert_equal(callback.intermediate_result[field], val)
|
330
|
+
assert_equal(res[field], val)
|
331
|
+
|
332
|
+
# Check that polish occurs after `StopIteration` as advertised
|
333
|
+
callback.nit = 0
|
334
|
+
func.val = np.inf
|
335
|
+
kwargs['polish'] = True
|
336
|
+
res = differential_evolution(**kwargs, callback=callback)
|
337
|
+
assert res.fun < ref.fun
|
338
|
+
|
339
|
+
def test_callback_terminates(self):
|
340
|
+
# test that if the callback returns true, then the minimization halts
|
341
|
+
bounds = [(0, 2), (0, 2)]
|
342
|
+
expected_msg = 'callback function requested stop early'
|
343
|
+
def callback_python_true(param, convergence=0.):
|
344
|
+
return True
|
345
|
+
|
346
|
+
result = differential_evolution(
|
347
|
+
rosen, bounds, callback=callback_python_true
|
348
|
+
)
|
349
|
+
assert_string_equal(result.message, expected_msg)
|
350
|
+
|
351
|
+
# if callback raises StopIteration then solve should be interrupted
|
352
|
+
def callback_stop(intermediate_result):
|
353
|
+
raise StopIteration
|
354
|
+
|
355
|
+
result = differential_evolution(rosen, bounds, callback=callback_stop)
|
356
|
+
assert not result.success
|
357
|
+
|
358
|
+
def callback_evaluates_true(param, convergence=0.):
|
359
|
+
# DE should stop if bool(self.callback) is True
|
360
|
+
return [10]
|
361
|
+
|
362
|
+
result = differential_evolution(rosen, bounds, callback=callback_evaluates_true)
|
363
|
+
assert_string_equal(result.message, expected_msg)
|
364
|
+
assert not result.success
|
365
|
+
|
366
|
+
def callback_evaluates_false(param, convergence=0.):
|
367
|
+
return []
|
368
|
+
|
369
|
+
result = differential_evolution(rosen, bounds,
|
370
|
+
callback=callback_evaluates_false)
|
371
|
+
assert result.success
|
372
|
+
|
373
|
+
def test_args_tuple_is_passed(self):
|
374
|
+
# test that the args tuple is passed to the cost function properly.
|
375
|
+
bounds = [(-10, 10)]
|
376
|
+
args = (1., 2., 3.)
|
377
|
+
|
378
|
+
def quadratic(x, *args):
|
379
|
+
if not isinstance(args, tuple):
|
380
|
+
raise ValueError('args should be a tuple')
|
381
|
+
return args[0] + args[1] * x + args[2] * x**2.
|
382
|
+
|
383
|
+
result = differential_evolution(quadratic,
|
384
|
+
bounds,
|
385
|
+
args=args,
|
386
|
+
polish=True)
|
387
|
+
assert_almost_equal(result.fun, 2 / 3.)
|
388
|
+
|
389
|
+
def test_init_with_invalid_strategy(self):
|
390
|
+
# test that passing an invalid strategy raises ValueError
|
391
|
+
func = rosen
|
392
|
+
bounds = [(-3, 3)]
|
393
|
+
assert_raises(ValueError,
|
394
|
+
differential_evolution,
|
395
|
+
func,
|
396
|
+
bounds,
|
397
|
+
strategy='abc')
|
398
|
+
|
399
|
+
def test_bounds_checking(self):
|
400
|
+
# test that the bounds checking works
|
401
|
+
func = rosen
|
402
|
+
bounds = [(-3)]
|
403
|
+
assert_raises(ValueError,
|
404
|
+
differential_evolution,
|
405
|
+
func,
|
406
|
+
bounds)
|
407
|
+
bounds = [(-3, 3), (3, 4, 5)]
|
408
|
+
assert_raises(ValueError,
|
409
|
+
differential_evolution,
|
410
|
+
func,
|
411
|
+
bounds)
|
412
|
+
|
413
|
+
# test that we can use a new-type Bounds object
|
414
|
+
result = differential_evolution(rosen, Bounds([0, 0], [2, 2]))
|
415
|
+
assert_almost_equal(result.x, (1., 1.))
|
416
|
+
|
417
|
+
def test_select_samples(self):
|
418
|
+
# select_samples should return 5 separate random numbers.
|
419
|
+
limits = np.arange(12., dtype='float64').reshape(2, 6)
|
420
|
+
bounds = list(zip(limits[0, :], limits[1, :]))
|
421
|
+
solver = DifferentialEvolutionSolver(None, bounds, popsize=1)
|
422
|
+
candidate = 0
|
423
|
+
r1, r2, r3, r4, r5 = solver._select_samples(candidate, 5)
|
424
|
+
assert_equal(
|
425
|
+
len(np.unique(np.array([candidate, r1, r2, r3, r4, r5]))), 6)
|
426
|
+
|
427
|
+
def test_maxiter_stops_solve(self):
|
428
|
+
# test that if the maximum number of iterations is exceeded
|
429
|
+
# the solver stops.
|
430
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, maxiter=1)
|
431
|
+
result = solver.solve()
|
432
|
+
assert_equal(result.success, False)
|
433
|
+
assert_equal(result.message,
|
434
|
+
'Maximum number of iterations has been exceeded.')
|
435
|
+
|
436
|
+
def test_maxfun_stops_solve(self):
|
437
|
+
# test that if the maximum number of function evaluations is exceeded
|
438
|
+
# during initialisation the solver stops
|
439
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, maxfun=1,
|
440
|
+
polish=False)
|
441
|
+
result = solver.solve()
|
442
|
+
|
443
|
+
assert_equal(result.nfev, 2)
|
444
|
+
assert_equal(result.success, False)
|
445
|
+
assert_equal(result.message,
|
446
|
+
'Maximum number of function evaluations has '
|
447
|
+
'been exceeded.')
|
448
|
+
|
449
|
+
# test that if the maximum number of function evaluations is exceeded
|
450
|
+
# during the actual minimisation, then the solver stops.
|
451
|
+
# Have to turn polishing off, as this will still occur even if maxfun
|
452
|
+
# is reached. For popsize=5 and len(bounds)=2, then there are only 10
|
453
|
+
# function evaluations during initialisation.
|
454
|
+
solver = DifferentialEvolutionSolver(rosen,
|
455
|
+
self.bounds,
|
456
|
+
popsize=5,
|
457
|
+
polish=False,
|
458
|
+
maxfun=40)
|
459
|
+
result = solver.solve()
|
460
|
+
|
461
|
+
assert_equal(result.nfev, 41)
|
462
|
+
assert_equal(result.success, False)
|
463
|
+
assert_equal(result.message,
|
464
|
+
'Maximum number of function evaluations has '
|
465
|
+
'been exceeded.')
|
466
|
+
|
467
|
+
# now repeat for updating='deferred version
|
468
|
+
# 47 function evaluations is not a multiple of the population size,
|
469
|
+
# so maxfun is reached partway through a population evaluation.
|
470
|
+
solver = DifferentialEvolutionSolver(rosen,
|
471
|
+
self.bounds,
|
472
|
+
popsize=5,
|
473
|
+
polish=False,
|
474
|
+
maxfun=47,
|
475
|
+
updating='deferred')
|
476
|
+
result = solver.solve()
|
477
|
+
|
478
|
+
assert_equal(result.nfev, 47)
|
479
|
+
assert_equal(result.success, False)
|
480
|
+
assert_equal(result.message,
|
481
|
+
'Maximum number of function evaluations has '
|
482
|
+
'been reached.')
|
483
|
+
|
484
|
+
def test_quadratic(self):
|
485
|
+
# test the quadratic function from object
|
486
|
+
solver = DifferentialEvolutionSolver(self.quadratic,
|
487
|
+
[(-100, 100)],
|
488
|
+
tol=0.02)
|
489
|
+
solver.solve()
|
490
|
+
assert_equal(np.argmin(solver.population_energies), 0)
|
491
|
+
|
492
|
+
def test_quadratic_from_diff_ev(self):
|
493
|
+
# test the quadratic function from differential_evolution function
|
494
|
+
differential_evolution(self.quadratic,
|
495
|
+
[(-100, 100)],
|
496
|
+
tol=0.02,
|
497
|
+
seed=1)
|
498
|
+
|
499
|
+
def test_rng_gives_repeatability(self):
|
500
|
+
result = differential_evolution(self.quadratic,
|
501
|
+
[(-100, 100)],
|
502
|
+
polish=False,
|
503
|
+
rng=1,
|
504
|
+
tol=0.5)
|
505
|
+
result2 = differential_evolution(self.quadratic,
|
506
|
+
[(-100, 100)],
|
507
|
+
polish=False,
|
508
|
+
rng=1,
|
509
|
+
tol=0.5)
|
510
|
+
assert_equal(result.x, result2.x)
|
511
|
+
assert_equal(result.nfev, result2.nfev)
|
512
|
+
|
513
|
+
def test_random_generator(self):
|
514
|
+
# check that np.random.Generator can be used (numpy >= 1.17)
|
515
|
+
# obtain a np.random.Generator object
|
516
|
+
rng = np.random.default_rng()
|
517
|
+
|
518
|
+
inits = ['random', 'latinhypercube', 'sobol', 'halton']
|
519
|
+
for init in inits:
|
520
|
+
differential_evolution(self.quadratic,
|
521
|
+
[(-100, 100)],
|
522
|
+
polish=False,
|
523
|
+
rng=rng,
|
524
|
+
tol=0.5,
|
525
|
+
init=init)
|
526
|
+
|
527
|
+
def test_exp_runs(self):
|
528
|
+
# test whether exponential mutation loop runs
|
529
|
+
solver = DifferentialEvolutionSolver(rosen,
|
530
|
+
self.bounds,
|
531
|
+
strategy='best1exp',
|
532
|
+
maxiter=1)
|
533
|
+
|
534
|
+
solver.solve()
|
535
|
+
|
536
|
+
def test_gh_4511_regression(self):
|
537
|
+
# This modification of the differential evolution docstring example
|
538
|
+
# uses a custom popsize that had triggered an off-by-one error.
|
539
|
+
# Because we do not care about solving the optimization problem in
|
540
|
+
# this test, we use maxiter=1 to reduce the testing time.
|
541
|
+
bounds = [(-5, 5), (-5, 5)]
|
542
|
+
# result = differential_evolution(rosen, bounds, popsize=1815,
|
543
|
+
# maxiter=1)
|
544
|
+
|
545
|
+
# the original issue arose because of rounding error in arange, with
|
546
|
+
# linspace being a much better solution. 1815 is quite a large popsize
|
547
|
+
# to use and results in a long test time (~13s). I used the original
|
548
|
+
# issue to figure out the lowest number of samples that would cause
|
549
|
+
# this rounding error to occur, 49.
|
550
|
+
differential_evolution(rosen, bounds, popsize=49, maxiter=1)
|
551
|
+
|
552
|
+
def test_calculate_population_energies(self):
|
553
|
+
# if popsize is 3, then the overall generation has size (6,)
|
554
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, popsize=3)
|
555
|
+
solver._calculate_population_energies(solver.population)
|
556
|
+
solver._promote_lowest_energy()
|
557
|
+
assert_equal(np.argmin(solver.population_energies), 0)
|
558
|
+
|
559
|
+
# initial calculation of the energies should require 6 nfev.
|
560
|
+
assert_equal(solver._nfev, 6)
|
561
|
+
|
562
|
+
def test_iteration(self):
|
563
|
+
# test that DifferentialEvolutionSolver is iterable
|
564
|
+
# if popsize is 3, then the overall generation has size (6,)
|
565
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, popsize=3,
|
566
|
+
maxfun=12)
|
567
|
+
x, fun = next(solver)
|
568
|
+
assert_equal(np.size(x, 0), 2)
|
569
|
+
|
570
|
+
# 6 nfev are required for initial calculation of energies, 6 nfev are
|
571
|
+
# required for the evolution of the 6 population members.
|
572
|
+
assert_equal(solver._nfev, 12)
|
573
|
+
|
574
|
+
# the next generation should halt because it exceeds maxfun
|
575
|
+
assert_raises(StopIteration, next, solver)
|
576
|
+
|
577
|
+
# check a proper minimisation can be done by an iterable solver
|
578
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds)
|
579
|
+
_, fun_prev = next(solver)
|
580
|
+
for i, soln in enumerate(solver):
|
581
|
+
x_current, fun_current = soln
|
582
|
+
assert fun_prev >= fun_current
|
583
|
+
_, fun_prev = x_current, fun_current
|
584
|
+
# need to have this otherwise the solver would never stop.
|
585
|
+
if i == 50:
|
586
|
+
break
|
587
|
+
|
588
|
+
def test_convergence(self):
|
589
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, tol=0.2,
|
590
|
+
polish=False)
|
591
|
+
solver.solve()
|
592
|
+
assert_(solver.convergence < 0.2)
|
593
|
+
|
594
|
+
def test_maxiter_none_GH5731(self):
|
595
|
+
# Pre 0.17 the previous default for maxiter and maxfun was None.
|
596
|
+
# the numerical defaults are now 1000 and np.inf. However, some scripts
|
597
|
+
# will still supply None for both of those, this will raise a TypeError
|
598
|
+
# in the solve method.
|
599
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, maxiter=None,
|
600
|
+
maxfun=None)
|
601
|
+
solver.solve()
|
602
|
+
|
603
|
+
def test_population_initiation(self):
|
604
|
+
# test the different modes of population initiation
|
605
|
+
|
606
|
+
# init must be either 'latinhypercube' or 'random'
|
607
|
+
# raising ValueError is something else is passed in
|
608
|
+
assert_raises(ValueError,
|
609
|
+
DifferentialEvolutionSolver,
|
610
|
+
*(rosen, self.bounds),
|
611
|
+
**{'init': 'rubbish'})
|
612
|
+
|
613
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds)
|
614
|
+
|
615
|
+
# check that population initiation:
|
616
|
+
# 1) resets _nfev to 0
|
617
|
+
# 2) all population energies are np.inf
|
618
|
+
solver.init_population_random()
|
619
|
+
assert_equal(solver._nfev, 0)
|
620
|
+
assert_(np.all(np.isinf(solver.population_energies)))
|
621
|
+
|
622
|
+
solver.init_population_lhs()
|
623
|
+
assert_equal(solver._nfev, 0)
|
624
|
+
assert_(np.all(np.isinf(solver.population_energies)))
|
625
|
+
|
626
|
+
solver.init_population_qmc(qmc_engine='halton')
|
627
|
+
assert_equal(solver._nfev, 0)
|
628
|
+
assert_(np.all(np.isinf(solver.population_energies)))
|
629
|
+
|
630
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds, init='sobol')
|
631
|
+
solver.init_population_qmc(qmc_engine='sobol')
|
632
|
+
assert_equal(solver._nfev, 0)
|
633
|
+
assert_(np.all(np.isinf(solver.population_energies)))
|
634
|
+
|
635
|
+
# we should be able to initialize with our own array
|
636
|
+
population = np.linspace(-1, 3, 10).reshape(5, 2)
|
637
|
+
solver = DifferentialEvolutionSolver(rosen, self.bounds,
|
638
|
+
init=population,
|
639
|
+
strategy='best2bin',
|
640
|
+
atol=0.01, rng=1, popsize=5)
|
641
|
+
|
642
|
+
assert_equal(solver._nfev, 0)
|
643
|
+
assert_(np.all(np.isinf(solver.population_energies)))
|
644
|
+
assert_(solver.num_population_members == 5)
|
645
|
+
assert_(solver.population_shape == (5, 2))
|
646
|
+
|
647
|
+
# check that the population was initialized correctly
|
648
|
+
unscaled_population = np.clip(solver._unscale_parameters(population),
|
649
|
+
0, 1)
|
650
|
+
assert_almost_equal(solver.population[:5], unscaled_population)
|
651
|
+
|
652
|
+
# population values need to be clipped to bounds
|
653
|
+
assert_almost_equal(np.min(solver.population[:5]), 0)
|
654
|
+
assert_almost_equal(np.max(solver.population[:5]), 1)
|
655
|
+
|
656
|
+
# shouldn't be able to initialize with an array if it's the wrong shape
|
657
|
+
# this would have too many parameters
|
658
|
+
population = np.linspace(-1, 3, 15).reshape(5, 3)
|
659
|
+
assert_raises(ValueError,
|
660
|
+
DifferentialEvolutionSolver,
|
661
|
+
*(rosen, self.bounds),
|
662
|
+
**{'init': population})
|
663
|
+
|
664
|
+
# provide an initial solution
|
665
|
+
# bounds are [(0, 2), (0, 2)]
|
666
|
+
x0 = np.random.uniform(low=0.0, high=2.0, size=2)
|
667
|
+
solver = DifferentialEvolutionSolver(
|
668
|
+
rosen, self.bounds, x0=x0
|
669
|
+
)
|
670
|
+
# parameters are scaled to unit interval
|
671
|
+
assert_allclose(solver.population[0], x0 / 2.0)
|
672
|
+
|
673
|
+
def test_x0(self):
|
674
|
+
# smoke test that checks that x0 is usable.
|
675
|
+
res = differential_evolution(rosen, self.bounds, x0=[0.2, 0.8])
|
676
|
+
assert res.success
|
677
|
+
|
678
|
+
# check what happens if some of the x0 lay outside the bounds
|
679
|
+
with assert_raises(ValueError):
|
680
|
+
differential_evolution(rosen, self.bounds, x0=[0.2, 2.1])
|
681
|
+
|
682
|
+
def test_infinite_objective_function(self):
|
683
|
+
# Test that there are no problems if the objective function
|
684
|
+
# returns inf on some runs
|
685
|
+
def sometimes_inf(x):
|
686
|
+
if x[0] < .5:
|
687
|
+
return np.inf
|
688
|
+
return x[1]
|
689
|
+
bounds = [(0, 1), (0, 1)]
|
690
|
+
differential_evolution(sometimes_inf, bounds=bounds, disp=False)
|
691
|
+
|
692
|
+
def test_deferred_updating(self):
|
693
|
+
# check setting of deferred updating, with default workers
|
694
|
+
bounds = [(0., 2.), (0., 2.)]
|
695
|
+
solver = DifferentialEvolutionSolver(rosen, bounds, updating='deferred')
|
696
|
+
assert_(solver._updating == 'deferred')
|
697
|
+
assert_(solver._mapwrapper._mapfunc is map)
|
698
|
+
res = solver.solve()
|
699
|
+
assert res.success
|
700
|
+
|
701
|
+
# check that deferred updating works with an exponential crossover
|
702
|
+
res = differential_evolution(
|
703
|
+
rosen, bounds, updating='deferred', strategy='best1exp'
|
704
|
+
)
|
705
|
+
assert res.success
|
706
|
+
|
707
|
+
@pytest.mark.thread_unsafe
|
708
|
+
def test_immediate_updating(self):
|
709
|
+
# check setting of immediate updating, with default workers
|
710
|
+
bounds = [(0., 2.), (0., 2.)]
|
711
|
+
solver = DifferentialEvolutionSolver(rosen, bounds)
|
712
|
+
assert_(solver._updating == 'immediate')
|
713
|
+
|
714
|
+
# Safely forking from a multithreaded process is
|
715
|
+
# problematic, and deprecated in Python 3.12, so
|
716
|
+
# we use a slower but portable alternative
|
717
|
+
# see gh-19848
|
718
|
+
ctx = multiprocessing.get_context("spawn")
|
719
|
+
with ctx.Pool(2) as p:
|
720
|
+
# should raise a UserWarning because the updating='immediate'
|
721
|
+
# is being overridden by the workers keyword
|
722
|
+
with warns(UserWarning):
|
723
|
+
with DifferentialEvolutionSolver(rosen, bounds, workers=p.map) as s:
|
724
|
+
solver.solve()
|
725
|
+
assert s._updating == 'deferred'
|
726
|
+
|
727
|
+
@pytest.mark.fail_slow(10)
|
728
|
+
def test_parallel(self):
|
729
|
+
# smoke test for parallelization with deferred updating
|
730
|
+
bounds = [(0., 2.), (0., 2.)]
|
731
|
+
# use threads instead of Process to speed things up for this simple example
|
732
|
+
with ThreadPool(2) as p, DifferentialEvolutionSolver(
|
733
|
+
rosen, bounds, updating='deferred', workers=p.map, tol=0.1, popsize=3
|
734
|
+
) as solver:
|
735
|
+
assert solver._mapwrapper.pool is not None
|
736
|
+
assert solver._updating == 'deferred'
|
737
|
+
solver.solve()
|
738
|
+
|
739
|
+
with DifferentialEvolutionSolver(
|
740
|
+
rosen, bounds, updating='deferred', workers=2, popsize=3, tol=0.1
|
741
|
+
) as solver:
|
742
|
+
assert solver._mapwrapper.pool is not None
|
743
|
+
assert solver._updating == 'deferred'
|
744
|
+
solver.solve()
|
745
|
+
|
746
|
+
def test_converged(self):
|
747
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)])
|
748
|
+
solver.solve()
|
749
|
+
assert_(solver.converged())
|
750
|
+
|
751
|
+
def test_constraint_violation_fn(self):
|
752
|
+
def constr_f(x):
|
753
|
+
return [x[0] + x[1]]
|
754
|
+
|
755
|
+
def constr_f2(x):
|
756
|
+
return np.array([x[0]**2 + x[1], x[0] - x[1]])
|
757
|
+
|
758
|
+
nlc = NonlinearConstraint(constr_f, -np.inf, 1.9)
|
759
|
+
|
760
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
761
|
+
constraints=(nlc,))
|
762
|
+
|
763
|
+
cv = solver._constraint_violation_fn(np.array([1.0, 1.0]))
|
764
|
+
assert_almost_equal(cv, 0.1)
|
765
|
+
|
766
|
+
nlc2 = NonlinearConstraint(constr_f2, -np.inf, 1.8)
|
767
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
768
|
+
constraints=(nlc, nlc2))
|
769
|
+
|
770
|
+
# for multiple constraints the constraint violations should
|
771
|
+
# be concatenated.
|
772
|
+
xs = [(1.2, 1), (2.0, 2.0), (0.5, 0.5)]
|
773
|
+
vs = [(0.3, 0.64, 0.0), (2.1, 4.2, 0.0), (0, 0, 0)]
|
774
|
+
|
775
|
+
for x, v in zip(xs, vs):
|
776
|
+
cv = solver._constraint_violation_fn(np.array(x))
|
777
|
+
assert_allclose(cv, np.atleast_2d(v))
|
778
|
+
|
779
|
+
# vectorized calculation of a series of solutions
|
780
|
+
assert_allclose(
|
781
|
+
solver._constraint_violation_fn(np.array(xs)), np.array(vs)
|
782
|
+
)
|
783
|
+
|
784
|
+
# the following line is used in _calculate_population_feasibilities.
|
785
|
+
# _constraint_violation_fn returns an (1, M) array when
|
786
|
+
# x.shape == (N,), i.e. a single solution. Therefore this list
|
787
|
+
# comprehension should generate (S, 1, M) array.
|
788
|
+
constraint_violation = np.array([solver._constraint_violation_fn(x)
|
789
|
+
for x in np.array(xs)])
|
790
|
+
assert constraint_violation.shape == (3, 1, 3)
|
791
|
+
|
792
|
+
# we need reasonable error messages if the constraint function doesn't
|
793
|
+
# return the right thing
|
794
|
+
def constr_f3(x):
|
795
|
+
# returns (S, M), rather than (M, S)
|
796
|
+
return constr_f2(x).T
|
797
|
+
|
798
|
+
nlc2 = NonlinearConstraint(constr_f3, -np.inf, 1.8)
|
799
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
800
|
+
constraints=(nlc, nlc2),
|
801
|
+
vectorized=False)
|
802
|
+
solver.vectorized = True
|
803
|
+
with pytest.raises(
|
804
|
+
RuntimeError, match="An array returned from a Constraint"
|
805
|
+
):
|
806
|
+
solver._constraint_violation_fn(np.array(xs))
|
807
|
+
|
808
|
+
def test_constraint_population_feasibilities(self):
|
809
|
+
def constr_f(x):
|
810
|
+
return [x[0] + x[1]]
|
811
|
+
|
812
|
+
def constr_f2(x):
|
813
|
+
return [x[0]**2 + x[1], x[0] - x[1]]
|
814
|
+
|
815
|
+
nlc = NonlinearConstraint(constr_f, -np.inf, 1.9)
|
816
|
+
|
817
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
818
|
+
constraints=(nlc,))
|
819
|
+
|
820
|
+
# are population feasibilities correct
|
821
|
+
# [0.5, 0.5] corresponds to scaled values of [1., 1.]
|
822
|
+
feas, cv = solver._calculate_population_feasibilities(
|
823
|
+
np.array([[0.5, 0.5], [1., 1.]]))
|
824
|
+
assert_equal(feas, [False, False])
|
825
|
+
assert_almost_equal(cv, np.array([[0.1], [2.1]]))
|
826
|
+
assert cv.shape == (2, 1)
|
827
|
+
|
828
|
+
nlc2 = NonlinearConstraint(constr_f2, -np.inf, 1.8)
|
829
|
+
|
830
|
+
for vectorize in [False, True]:
|
831
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
832
|
+
constraints=(nlc, nlc2),
|
833
|
+
vectorized=vectorize,
|
834
|
+
updating='deferred')
|
835
|
+
|
836
|
+
feas, cv = solver._calculate_population_feasibilities(
|
837
|
+
np.array([[0.5, 0.5], [0.6, 0.5]]))
|
838
|
+
assert_equal(feas, [False, False])
|
839
|
+
assert_almost_equal(cv, np.array([[0.1, 0.2, 0], [0.3, 0.64, 0]]))
|
840
|
+
|
841
|
+
feas, cv = solver._calculate_population_feasibilities(
|
842
|
+
np.array([[0.5, 0.5], [1., 1.]]))
|
843
|
+
assert_equal(feas, [False, False])
|
844
|
+
assert_almost_equal(cv, np.array([[0.1, 0.2, 0], [2.1, 4.2, 0]]))
|
845
|
+
assert cv.shape == (2, 3)
|
846
|
+
|
847
|
+
feas, cv = solver._calculate_population_feasibilities(
|
848
|
+
np.array([[0.25, 0.25], [1., 1.]]))
|
849
|
+
assert_equal(feas, [True, False])
|
850
|
+
assert_almost_equal(cv, np.array([[0.0, 0.0, 0.], [2.1, 4.2, 0]]))
|
851
|
+
assert cv.shape == (2, 3)
|
852
|
+
|
853
|
+
@pytest.mark.thread_unsafe
|
854
|
+
def test_constraint_solve(self):
|
855
|
+
def constr_f(x):
|
856
|
+
return np.array([x[0] + x[1]])
|
857
|
+
|
858
|
+
nlc = NonlinearConstraint(constr_f, -np.inf, 1.9)
|
859
|
+
|
860
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
861
|
+
constraints=(nlc,))
|
862
|
+
|
863
|
+
# trust-constr warns if the constraint function is linear
|
864
|
+
with warns(UserWarning):
|
865
|
+
res = solver.solve()
|
866
|
+
|
867
|
+
assert constr_f(res.x) <= 1.9
|
868
|
+
assert res.success
|
869
|
+
|
870
|
+
@pytest.mark.fail_slow(10)
|
871
|
+
@pytest.mark.thread_unsafe
|
872
|
+
def test_impossible_constraint(self):
|
873
|
+
def constr_f(x):
|
874
|
+
return np.array([x[0] + x[1]])
|
875
|
+
|
876
|
+
nlc = NonlinearConstraint(constr_f, -np.inf, -1)
|
877
|
+
|
878
|
+
solver = DifferentialEvolutionSolver(
|
879
|
+
rosen, [(0, 2), (0, 2)], constraints=(nlc,), popsize=1, rng=1, maxiter=100
|
880
|
+
)
|
881
|
+
|
882
|
+
# a UserWarning is issued because the 'trust-constr' polishing is
|
883
|
+
# attempted on the least infeasible solution found.
|
884
|
+
with warns(UserWarning):
|
885
|
+
res = solver.solve()
|
886
|
+
|
887
|
+
assert res.maxcv > 0
|
888
|
+
assert not res.success
|
889
|
+
|
890
|
+
# test _promote_lowest_energy works when none of the population is
|
891
|
+
# feasible. In this case, the solution with the lowest constraint
|
892
|
+
# violation should be promoted.
|
893
|
+
solver = DifferentialEvolutionSolver(
|
894
|
+
rosen, [(0, 2), (0, 2)], constraints=(nlc,), polish=False)
|
895
|
+
next(solver)
|
896
|
+
assert not solver.feasible.all()
|
897
|
+
assert not np.isfinite(solver.population_energies).all()
|
898
|
+
|
899
|
+
# now swap two of the entries in the population
|
900
|
+
l = 20
|
901
|
+
cv = solver.constraint_violation[0]
|
902
|
+
|
903
|
+
solver.population_energies[[0, l]] = solver.population_energies[[l, 0]]
|
904
|
+
solver.population[[0, l], :] = solver.population[[l, 0], :]
|
905
|
+
solver.constraint_violation[[0, l], :] = (
|
906
|
+
solver.constraint_violation[[l, 0], :])
|
907
|
+
|
908
|
+
solver._promote_lowest_energy()
|
909
|
+
assert_equal(solver.constraint_violation[0], cv)
|
910
|
+
|
911
|
+
def test_accept_trial(self):
|
912
|
+
# _accept_trial(self, energy_trial, feasible_trial, cv_trial,
|
913
|
+
# energy_orig, feasible_orig, cv_orig)
|
914
|
+
def constr_f(x):
|
915
|
+
return [x[0] + x[1]]
|
916
|
+
nlc = NonlinearConstraint(constr_f, -np.inf, 1.9)
|
917
|
+
solver = DifferentialEvolutionSolver(rosen, [(0, 2), (0, 2)],
|
918
|
+
constraints=(nlc,))
|
919
|
+
fn = solver._accept_trial
|
920
|
+
# both solutions are feasible, select lower energy
|
921
|
+
assert fn(0.1, True, np.array([0.]), 1.0, True, np.array([0.]))
|
922
|
+
assert (fn(1.0, True, np.array([0.0]), 0.1, True, np.array([0.0])) is False)
|
923
|
+
assert fn(0.1, True, np.array([0.]), 0.1, True, np.array([0.]))
|
924
|
+
|
925
|
+
# trial is feasible, original is not
|
926
|
+
assert fn(9.9, True, np.array([0.]), 1.0, False, np.array([1.]))
|
927
|
+
|
928
|
+
# trial and original are infeasible
|
929
|
+
# cv_trial have to be <= cv_original to be better
|
930
|
+
assert (fn(0.1, False, np.array([0.5, 0.5]),
|
931
|
+
1.0, False, np.array([1., 1.0])))
|
932
|
+
assert (fn(0.1, False, np.array([0.5, 0.5]),
|
933
|
+
1.0, False, np.array([1., 0.50])))
|
934
|
+
assert not (fn(1.0, False, np.array([0.5, 0.5]),
|
935
|
+
1.0, False, np.array([1.0, 0.4])))
|
936
|
+
|
937
|
+
def test_constraint_wrapper(self):
|
938
|
+
lb = np.array([0, 20, 30])
|
939
|
+
ub = np.array([0.5, np.inf, 70])
|
940
|
+
x0 = np.array([1, 2, 3])
|
941
|
+
pc = _ConstraintWrapper(Bounds(lb, ub), x0)
|
942
|
+
assert (pc.violation(x0) > 0).any()
|
943
|
+
assert (pc.violation([0.25, 21, 31]) == 0).all()
|
944
|
+
|
945
|
+
# check vectorized Bounds constraint
|
946
|
+
xs = np.arange(1, 16).reshape(5, 3)
|
947
|
+
violations = []
|
948
|
+
for x in xs:
|
949
|
+
violations.append(pc.violation(x))
|
950
|
+
np.testing.assert_allclose(pc.violation(xs.T), np.array(violations).T)
|
951
|
+
|
952
|
+
x0 = np.array([1, 2, 3, 4])
|
953
|
+
A = np.array([[1, 2, 3, 4], [5, 0, 0, 6], [7, 0, 8, 0]])
|
954
|
+
pc = _ConstraintWrapper(LinearConstraint(A, -np.inf, 0), x0)
|
955
|
+
assert (pc.violation(x0) > 0).any()
|
956
|
+
assert (pc.violation([-10, 2, -10, 4]) == 0).all()
|
957
|
+
|
958
|
+
# check vectorized LinearConstraint, for 7 lots of parameter vectors
|
959
|
+
# with each parameter vector being 4 long, with 3 constraints
|
960
|
+
# xs is the same shape as stored in the differential evolution
|
961
|
+
# population, but it's sent to the violation function as (len(x), M)
|
962
|
+
xs = np.arange(1, 29).reshape(7, 4)
|
963
|
+
violations = []
|
964
|
+
for x in xs:
|
965
|
+
violations.append(pc.violation(x))
|
966
|
+
np.testing.assert_allclose(pc.violation(xs.T), np.array(violations).T)
|
967
|
+
|
968
|
+
pc = _ConstraintWrapper(LinearConstraint(csr_array(A), -np.inf, 0),
|
969
|
+
x0)
|
970
|
+
assert (pc.violation(x0) > 0).any()
|
971
|
+
assert (pc.violation([-10, 2, -10, 4]) == 0).all()
|
972
|
+
|
973
|
+
def fun(x):
|
974
|
+
return A.dot(x)
|
975
|
+
|
976
|
+
nonlinear = NonlinearConstraint(fun, -np.inf, 0)
|
977
|
+
pc = _ConstraintWrapper(nonlinear, [-10, 2, -10, 4])
|
978
|
+
assert (pc.violation(x0) > 0).any()
|
979
|
+
assert (pc.violation([-10, 2, -10, 4]) == 0).all()
|
980
|
+
|
981
|
+
def test_constraint_wrapper_violation(self):
|
982
|
+
def cons_f(x):
|
983
|
+
# written in vectorised form to accept an array of (N, S)
|
984
|
+
# returning (M, S)
|
985
|
+
# where N is the number of parameters,
|
986
|
+
# S is the number of solution vectors to be examined,
|
987
|
+
# and M is the number of constraint components
|
988
|
+
return np.array([x[0] ** 2 + x[1],
|
989
|
+
x[0] ** 2 - x[1]])
|
990
|
+
|
991
|
+
nlc = NonlinearConstraint(cons_f, [-1, -0.8500], [2, 2])
|
992
|
+
pc = _ConstraintWrapper(nlc, [0.5, 1])
|
993
|
+
assert np.size(pc.bounds[0]) == 2
|
994
|
+
|
995
|
+
xs = [(0.5, 1), (0.5, 1.2), (1.2, 1.2), (0.1, -1.2), (0.1, 2.0)]
|
996
|
+
vs = [(0, 0), (0, 0.1), (0.64, 0), (0.19, 0), (0.01, 1.14)]
|
997
|
+
|
998
|
+
for x, v in zip(xs, vs):
|
999
|
+
assert_allclose(pc.violation(x), v)
|
1000
|
+
|
1001
|
+
# now check that we can vectorize the constraint wrapper
|
1002
|
+
assert_allclose(pc.violation(np.array(xs).T),
|
1003
|
+
np.array(vs).T)
|
1004
|
+
assert pc.fun(np.array(xs).T).shape == (2, len(xs))
|
1005
|
+
assert pc.violation(np.array(xs).T).shape == (2, len(xs))
|
1006
|
+
assert pc.num_constr == 2
|
1007
|
+
assert pc.parameter_count == 2
|
1008
|
+
|
1009
|
+
def test_matrix_linear_constraint(self):
|
1010
|
+
# gh20041 supplying an np.matrix to construct a LinearConstraint caused
|
1011
|
+
# _ConstraintWrapper to start returning constraint violations of the
|
1012
|
+
# wrong shape.
|
1013
|
+
with suppress_warnings() as sup:
|
1014
|
+
sup.filter(PendingDeprecationWarning)
|
1015
|
+
matrix = np.matrix([[1, 1, 1, 1.],
|
1016
|
+
[2, 2, 2, 2.]])
|
1017
|
+
lc = LinearConstraint(matrix, 0, 1)
|
1018
|
+
x0 = np.ones(4)
|
1019
|
+
cw = _ConstraintWrapper(lc, x0)
|
1020
|
+
# the shape of the constraint violation should be the same as the number
|
1021
|
+
# of constraints applied.
|
1022
|
+
assert cw.violation(x0).shape == (2,)
|
1023
|
+
|
1024
|
+
# let's try a vectorised violation call.
|
1025
|
+
xtrial = np.arange(4 * 5).reshape(4, 5)
|
1026
|
+
assert cw.violation(xtrial).shape == (2, 5)
|
1027
|
+
|
1028
|
+
@pytest.mark.fail_slow(20)
|
1029
|
+
def test_L1(self):
|
1030
|
+
# Lampinen ([5]) test problem 1
|
1031
|
+
|
1032
|
+
def f(x):
|
1033
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1034
|
+
fun = np.sum(5*x[1:5]) - 5*x[1:5]@x[1:5] - np.sum(x[5:])
|
1035
|
+
return fun
|
1036
|
+
|
1037
|
+
A = np.zeros((10, 14)) # 1-indexed to match reference
|
1038
|
+
A[1, [1, 2, 10, 11]] = 2, 2, 1, 1
|
1039
|
+
A[2, [1, 10]] = -8, 1
|
1040
|
+
A[3, [4, 5, 10]] = -2, -1, 1
|
1041
|
+
A[4, [1, 3, 10, 11]] = 2, 2, 1, 1
|
1042
|
+
A[5, [2, 11]] = -8, 1
|
1043
|
+
A[6, [6, 7, 11]] = -2, -1, 1
|
1044
|
+
A[7, [2, 3, 11, 12]] = 2, 2, 1, 1
|
1045
|
+
A[8, [3, 12]] = -8, 1
|
1046
|
+
A[9, [8, 9, 12]] = -2, -1, 1
|
1047
|
+
A = A[1:, 1:]
|
1048
|
+
|
1049
|
+
b = np.array([10, 0, 0, 10, 0, 0, 10, 0, 0])
|
1050
|
+
|
1051
|
+
L = LinearConstraint(A, -np.inf, b)
|
1052
|
+
|
1053
|
+
bounds = [(0, 1)]*9 + [(0, 100)]*3 + [(0, 1)]
|
1054
|
+
|
1055
|
+
# using a lower popsize to speed the test up
|
1056
|
+
res = differential_evolution(
|
1057
|
+
f, bounds, strategy='best1bin', rng=12345, constraints=(L,),
|
1058
|
+
popsize=5, tol=0.01
|
1059
|
+
)
|
1060
|
+
|
1061
|
+
x_opt = (1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 3, 3, 1)
|
1062
|
+
f_opt = -15
|
1063
|
+
|
1064
|
+
assert_allclose(f(x_opt), f_opt, atol=6e-4)
|
1065
|
+
assert res.success
|
1066
|
+
assert_allclose(res.x, x_opt, atol=6e-4)
|
1067
|
+
assert_allclose(res.fun, f_opt, atol=5e-3)
|
1068
|
+
assert_(np.all(A@res.x <= b))
|
1069
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1070
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1071
|
+
|
1072
|
+
# now repeat the same solve, using the same overall constraints,
|
1073
|
+
# but using a sparse array for the LinearConstraint instead of an
|
1074
|
+
# array
|
1075
|
+
|
1076
|
+
L = LinearConstraint(csr_array(A), -np.inf, b)
|
1077
|
+
|
1078
|
+
# using a lower popsize to speed the test up
|
1079
|
+
res = differential_evolution(
|
1080
|
+
f, bounds, strategy='best1bin', rng=1211134, constraints=(L,),
|
1081
|
+
popsize=2, tol=0.05
|
1082
|
+
)
|
1083
|
+
|
1084
|
+
assert_allclose(f(x_opt), f_opt)
|
1085
|
+
assert res.success
|
1086
|
+
assert_allclose(res.x, x_opt, atol=5e-4)
|
1087
|
+
assert_allclose(res.fun, f_opt, atol=5e-3)
|
1088
|
+
assert_(np.all(A@res.x <= b))
|
1089
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1090
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1091
|
+
|
1092
|
+
# now repeat the same solve, using the same overall constraints,
|
1093
|
+
# but specify half the constraints in terms of LinearConstraint,
|
1094
|
+
# and the other half by NonlinearConstraint
|
1095
|
+
def c1(x):
|
1096
|
+
x = np.hstack(([0], x))
|
1097
|
+
return [2*x[2] + 2*x[3] + x[11] + x[12],
|
1098
|
+
-8*x[3] + x[12]]
|
1099
|
+
|
1100
|
+
def c2(x):
|
1101
|
+
x = np.hstack(([0], x))
|
1102
|
+
return -2*x[8] - x[9] + x[12]
|
1103
|
+
|
1104
|
+
L = LinearConstraint(A[:5, :], -np.inf, b[:5])
|
1105
|
+
L2 = LinearConstraint(A[5:6, :], -np.inf, b[5:6])
|
1106
|
+
N = NonlinearConstraint(c1, -np.inf, b[6:8])
|
1107
|
+
N2 = NonlinearConstraint(c2, -np.inf, b[8:9])
|
1108
|
+
constraints = (L, N, L2, N2)
|
1109
|
+
|
1110
|
+
with suppress_warnings() as sup:
|
1111
|
+
sup.filter(UserWarning)
|
1112
|
+
res = differential_evolution(
|
1113
|
+
f, bounds, strategy='best1bin', rng=1211134,
|
1114
|
+
constraints=constraints, popsize=2, tol=0.05
|
1115
|
+
)
|
1116
|
+
|
1117
|
+
assert_allclose(res.x, x_opt, atol=6e-4)
|
1118
|
+
assert_allclose(res.fun, f_opt, atol=5e-3)
|
1119
|
+
assert_(np.all(A@res.x <= b))
|
1120
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1121
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1122
|
+
|
1123
|
+
@pytest.mark.fail_slow(10)
|
1124
|
+
def test_L2(self):
|
1125
|
+
# Lampinen ([5]) test problem 2
|
1126
|
+
|
1127
|
+
def f(x):
|
1128
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1129
|
+
fun = ((x[1]-10)**2 + 5*(x[2]-12)**2 + x[3]**4 + 3*(x[4]-11)**2 +
|
1130
|
+
10*x[5]**6 + 7*x[6]**2 + x[7]**4 - 4*x[6]*x[7] - 10*x[6] -
|
1131
|
+
8*x[7])
|
1132
|
+
return fun
|
1133
|
+
|
1134
|
+
def c1(x):
|
1135
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1136
|
+
return [127 - 2*x[1]**2 - 3*x[2]**4 - x[3] - 4*x[4]**2 - 5*x[5],
|
1137
|
+
196 - 23*x[1] - x[2]**2 - 6*x[6]**2 + 8*x[7],
|
1138
|
+
282 - 7*x[1] - 3*x[2] - 10*x[3]**2 - x[4] + x[5],
|
1139
|
+
-4*x[1]**2 - x[2]**2 + 3*x[1]*x[2] - 2*x[3]**2 -
|
1140
|
+
5*x[6] + 11*x[7]]
|
1141
|
+
|
1142
|
+
N = NonlinearConstraint(c1, 0, np.inf)
|
1143
|
+
bounds = [(-10, 10)]*7
|
1144
|
+
constraints = (N)
|
1145
|
+
|
1146
|
+
with suppress_warnings() as sup:
|
1147
|
+
sup.filter(UserWarning)
|
1148
|
+
res = differential_evolution(f, bounds, strategy='best1bin',
|
1149
|
+
rng=1234, constraints=constraints)
|
1150
|
+
|
1151
|
+
f_opt = 680.6300599487869
|
1152
|
+
x_opt = (2.330499, 1.951372, -0.4775414, 4.365726,
|
1153
|
+
-0.6244870, 1.038131, 1.594227)
|
1154
|
+
|
1155
|
+
assert_allclose(f(x_opt), f_opt)
|
1156
|
+
assert_allclose(res.fun, f_opt)
|
1157
|
+
assert_allclose(res.x, x_opt, atol=1e-5)
|
1158
|
+
assert res.success
|
1159
|
+
assert_(np.all(np.array(c1(res.x)) >= 0))
|
1160
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1161
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1162
|
+
|
1163
|
+
@pytest.mark.fail_slow(10)
|
1164
|
+
def test_L3(self):
|
1165
|
+
# Lampinen ([5]) test problem 3
|
1166
|
+
|
1167
|
+
def f(x):
|
1168
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1169
|
+
fun = (x[1]**2 + x[2]**2 + x[1]*x[2] - 14*x[1] - 16*x[2] +
|
1170
|
+
(x[3]-10)**2 + 4*(x[4]-5)**2 + (x[5]-3)**2 + 2*(x[6]-1)**2 +
|
1171
|
+
5*x[7]**2 + 7*(x[8]-11)**2 + 2*(x[9]-10)**2 +
|
1172
|
+
(x[10] - 7)**2 + 45
|
1173
|
+
)
|
1174
|
+
return fun # maximize
|
1175
|
+
|
1176
|
+
A = np.zeros((4, 11))
|
1177
|
+
A[1, [1, 2, 7, 8]] = -4, -5, 3, -9
|
1178
|
+
A[2, [1, 2, 7, 8]] = -10, 8, 17, -2
|
1179
|
+
A[3, [1, 2, 9, 10]] = 8, -2, -5, 2
|
1180
|
+
A = A[1:, 1:]
|
1181
|
+
b = np.array([-105, 0, -12])
|
1182
|
+
|
1183
|
+
def c1(x):
|
1184
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1185
|
+
return [3*x[1] - 6*x[2] - 12*(x[9]-8)**2 + 7*x[10],
|
1186
|
+
-3*(x[1]-2)**2 - 4*(x[2]-3)**2 - 2*x[3]**2 + 7*x[4] + 120,
|
1187
|
+
-x[1]**2 - 2*(x[2]-2)**2 + 2*x[1]*x[2] - 14*x[5] + 6*x[6],
|
1188
|
+
-5*x[1]**2 - 8*x[2] - (x[3]-6)**2 + 2*x[4] + 40,
|
1189
|
+
-0.5*(x[1]-8)**2 - 2*(x[2]-4)**2 - 3*x[5]**2 + x[6] + 30]
|
1190
|
+
|
1191
|
+
L = LinearConstraint(A, b, np.inf)
|
1192
|
+
N = NonlinearConstraint(c1, 0, np.inf)
|
1193
|
+
bounds = [(-10, 10)]*10
|
1194
|
+
constraints = (L, N)
|
1195
|
+
|
1196
|
+
with suppress_warnings() as sup:
|
1197
|
+
sup.filter(UserWarning)
|
1198
|
+
res = differential_evolution(f, bounds, rng=1234,
|
1199
|
+
constraints=constraints, popsize=3)
|
1200
|
+
|
1201
|
+
x_opt = (2.171996, 2.363683, 8.773926, 5.095984, 0.9906548,
|
1202
|
+
1.430574, 1.321644, 9.828726, 8.280092, 8.375927)
|
1203
|
+
f_opt = 24.3062091
|
1204
|
+
|
1205
|
+
assert_allclose(f(x_opt), f_opt, atol=1e-5)
|
1206
|
+
assert_allclose(res.x, x_opt, atol=1e-6)
|
1207
|
+
assert_allclose(res.fun, f_opt, atol=1e-5)
|
1208
|
+
assert res.success
|
1209
|
+
assert_(np.all(A @ res.x >= b))
|
1210
|
+
assert_(np.all(np.array(c1(res.x)) >= 0))
|
1211
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1212
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1213
|
+
|
1214
|
+
@pytest.mark.fail_slow(10)
|
1215
|
+
def test_L4(self):
|
1216
|
+
# Lampinen ([5]) test problem 4
|
1217
|
+
def f(x):
|
1218
|
+
return np.sum(x[:3])
|
1219
|
+
|
1220
|
+
A = np.zeros((4, 9))
|
1221
|
+
A[1, [4, 6]] = 0.0025, 0.0025
|
1222
|
+
A[2, [5, 7, 4]] = 0.0025, 0.0025, -0.0025
|
1223
|
+
A[3, [8, 5]] = 0.01, -0.01
|
1224
|
+
A = A[1:, 1:]
|
1225
|
+
b = np.array([1, 1, 1])
|
1226
|
+
|
1227
|
+
def c1(x):
|
1228
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1229
|
+
return [x[1]*x[6] - 833.33252*x[4] - 100*x[1] + 83333.333,
|
1230
|
+
x[2]*x[7] - 1250*x[5] - x[2]*x[4] + 1250*x[4],
|
1231
|
+
x[3]*x[8] - 1250000 - x[3]*x[5] + 2500*x[5]]
|
1232
|
+
|
1233
|
+
L = LinearConstraint(A, -np.inf, 1)
|
1234
|
+
N = NonlinearConstraint(c1, 0, np.inf)
|
1235
|
+
|
1236
|
+
bounds = [(100, 10000)] + [(1000, 10000)]*2 + [(10, 1000)]*5
|
1237
|
+
constraints = (L, N)
|
1238
|
+
|
1239
|
+
with suppress_warnings() as sup:
|
1240
|
+
sup.filter(UserWarning)
|
1241
|
+
res = differential_evolution(
|
1242
|
+
f, bounds, strategy='best1bin', rng=1234,
|
1243
|
+
constraints=constraints, popsize=3, tol=0.05
|
1244
|
+
)
|
1245
|
+
|
1246
|
+
f_opt = 7049.248
|
1247
|
+
|
1248
|
+
x_opt = [579.306692, 1359.97063, 5109.9707, 182.0177, 295.601172,
|
1249
|
+
217.9823, 286.416528, 395.601172]
|
1250
|
+
|
1251
|
+
assert_allclose(f(x_opt), f_opt, atol=0.001)
|
1252
|
+
assert_allclose(res.fun, f_opt, atol=0.001)
|
1253
|
+
|
1254
|
+
# use higher tol here for 32-bit Windows, see gh-11693
|
1255
|
+
if (platform.system() == 'Windows' and np.dtype(np.intp).itemsize < 8):
|
1256
|
+
assert_allclose(res.x, x_opt, rtol=2.4e-6, atol=0.0035)
|
1257
|
+
else:
|
1258
|
+
# tolerance determined from macOS + MKL failure, see gh-12701
|
1259
|
+
assert_allclose(res.x, x_opt, rtol=5e-6, atol=0.0024)
|
1260
|
+
|
1261
|
+
assert res.success
|
1262
|
+
assert_(np.all(A @ res.x <= b))
|
1263
|
+
assert_(np.all(np.array(c1(res.x)) >= 0))
|
1264
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1265
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1266
|
+
|
1267
|
+
@pytest.mark.fail_slow(10)
|
1268
|
+
def test_L5(self):
|
1269
|
+
# Lampinen ([5]) test problem 5
|
1270
|
+
|
1271
|
+
def f(x):
|
1272
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1273
|
+
fun = (np.sin(2*np.pi*x[1])**3*np.sin(2*np.pi*x[2]) /
|
1274
|
+
(x[1]**3*(x[1]+x[2])))
|
1275
|
+
return -fun # maximize
|
1276
|
+
|
1277
|
+
def c1(x):
|
1278
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1279
|
+
return [x[1]**2 - x[2] + 1,
|
1280
|
+
1 - x[1] + (x[2]-4)**2]
|
1281
|
+
|
1282
|
+
N = NonlinearConstraint(c1, -np.inf, 0)
|
1283
|
+
bounds = [(0, 10)]*2
|
1284
|
+
constraints = (N)
|
1285
|
+
|
1286
|
+
res = differential_evolution(f, bounds, strategy='rand1bin', rng=1234,
|
1287
|
+
constraints=constraints)
|
1288
|
+
|
1289
|
+
x_opt = (1.22797135, 4.24537337)
|
1290
|
+
f_opt = -0.095825
|
1291
|
+
assert_allclose(f(x_opt), f_opt, atol=2e-5)
|
1292
|
+
assert_allclose(res.fun, f_opt, atol=1e-4)
|
1293
|
+
assert res.success
|
1294
|
+
assert_(np.all(np.array(c1(res.x)) <= 0))
|
1295
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1296
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1297
|
+
|
1298
|
+
@pytest.mark.fail_slow(10)
|
1299
|
+
def test_L6(self):
|
1300
|
+
# Lampinen ([5]) test problem 6
|
1301
|
+
def f(x):
|
1302
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1303
|
+
fun = (x[1]-10)**3 + (x[2] - 20)**3
|
1304
|
+
return fun
|
1305
|
+
|
1306
|
+
def c1(x):
|
1307
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1308
|
+
return [(x[1]-5)**2 + (x[2] - 5)**2 - 100,
|
1309
|
+
-(x[1]-6)**2 - (x[2] - 5)**2 + 82.81]
|
1310
|
+
|
1311
|
+
N = NonlinearConstraint(c1, 0, np.inf)
|
1312
|
+
bounds = [(13, 100), (0, 100)]
|
1313
|
+
constraints = (N)
|
1314
|
+
res = differential_evolution(f, bounds, strategy='rand1bin', rng=1234,
|
1315
|
+
constraints=constraints, tol=1e-7)
|
1316
|
+
x_opt = (14.095, 0.84296)
|
1317
|
+
f_opt = -6961.814744
|
1318
|
+
|
1319
|
+
assert_allclose(f(x_opt), f_opt, atol=1e-6)
|
1320
|
+
assert_allclose(res.fun, f_opt, atol=0.001)
|
1321
|
+
assert_allclose(res.x, x_opt, atol=1e-4)
|
1322
|
+
assert res.success
|
1323
|
+
assert_(np.all(np.array(c1(res.x)) >= 0))
|
1324
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1325
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1326
|
+
|
1327
|
+
def test_L7(self):
|
1328
|
+
# Lampinen ([5]) test problem 7
|
1329
|
+
def f(x):
|
1330
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1331
|
+
fun = (5.3578547*x[3]**2 + 0.8356891*x[1]*x[5] +
|
1332
|
+
37.293239*x[1] - 40792.141)
|
1333
|
+
return fun
|
1334
|
+
|
1335
|
+
def c1(x):
|
1336
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1337
|
+
return [
|
1338
|
+
85.334407 + 0.0056858*x[2]*x[5] + 0.0006262*x[1]*x[4] -
|
1339
|
+
0.0022053*x[3]*x[5],
|
1340
|
+
|
1341
|
+
80.51249 + 0.0071317*x[2]*x[5] + 0.0029955*x[1]*x[2] +
|
1342
|
+
0.0021813*x[3]**2,
|
1343
|
+
|
1344
|
+
9.300961 + 0.0047026*x[3]*x[5] + 0.0012547*x[1]*x[3] +
|
1345
|
+
0.0019085*x[3]*x[4]
|
1346
|
+
]
|
1347
|
+
|
1348
|
+
N = NonlinearConstraint(c1, [0, 90, 20], [92, 110, 25])
|
1349
|
+
|
1350
|
+
bounds = [(78, 102), (33, 45)] + [(27, 45)]*3
|
1351
|
+
constraints = (N)
|
1352
|
+
|
1353
|
+
res = differential_evolution(f, bounds, strategy='rand1bin', rng=1234,
|
1354
|
+
constraints=constraints)
|
1355
|
+
|
1356
|
+
# using our best solution, rather than Lampinen/Koziel. Koziel solution
|
1357
|
+
# doesn't satisfy constraints, Lampinen f_opt just plain wrong.
|
1358
|
+
x_opt = [78.00000686, 33.00000362, 29.99526064, 44.99999971,
|
1359
|
+
36.77579979]
|
1360
|
+
|
1361
|
+
f_opt = -30665.537578
|
1362
|
+
|
1363
|
+
assert_allclose(f(x_opt), f_opt)
|
1364
|
+
assert_allclose(res.x, x_opt, atol=1e-3)
|
1365
|
+
assert_allclose(res.fun, f_opt, atol=1e-3)
|
1366
|
+
|
1367
|
+
assert res.success
|
1368
|
+
assert_(np.all(np.array(c1(res.x)) >= np.array([0, 90, 20])))
|
1369
|
+
assert_(np.all(np.array(c1(res.x)) <= np.array([92, 110, 25])))
|
1370
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1371
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1372
|
+
|
1373
|
+
@pytest.mark.xslow
|
1374
|
+
@pytest.mark.xfail(platform.machine() == 'ppc64le',
|
1375
|
+
reason="fails on ppc64le")
|
1376
|
+
def test_L8(self):
|
1377
|
+
def f(x):
|
1378
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1379
|
+
fun = 3*x[1] + 0.000001*x[1]**3 + 2*x[2] + 0.000002/3*x[2]**3
|
1380
|
+
return fun
|
1381
|
+
|
1382
|
+
A = np.zeros((3, 5))
|
1383
|
+
A[1, [4, 3]] = 1, -1
|
1384
|
+
A[2, [3, 4]] = 1, -1
|
1385
|
+
A = A[1:, 1:]
|
1386
|
+
b = np.array([-.55, -.55])
|
1387
|
+
|
1388
|
+
def c1(x):
|
1389
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1390
|
+
return [
|
1391
|
+
1000*np.sin(-x[3]-0.25) + 1000*np.sin(-x[4]-0.25) +
|
1392
|
+
894.8 - x[1],
|
1393
|
+
1000*np.sin(x[3]-0.25) + 1000*np.sin(x[3]-x[4]-0.25) +
|
1394
|
+
894.8 - x[2],
|
1395
|
+
1000*np.sin(x[4]-0.25) + 1000*np.sin(x[4]-x[3]-0.25) +
|
1396
|
+
1294.8
|
1397
|
+
]
|
1398
|
+
L = LinearConstraint(A, b, np.inf)
|
1399
|
+
N = NonlinearConstraint(c1, np.full(3, -0.001), np.full(3, 0.001))
|
1400
|
+
|
1401
|
+
bounds = [(0, 1200)]*2+[(-.55, .55)]*2
|
1402
|
+
constraints = (L, N)
|
1403
|
+
|
1404
|
+
with suppress_warnings() as sup:
|
1405
|
+
sup.filter(UserWarning)
|
1406
|
+
# original Lampinen test was with rand1bin, but that takes a
|
1407
|
+
# huge amount of CPU time. Changing strategy to best1bin speeds
|
1408
|
+
# things up a lot
|
1409
|
+
res = differential_evolution(f, bounds, strategy='best1bin',
|
1410
|
+
rng=1234, constraints=constraints,
|
1411
|
+
maxiter=5000)
|
1412
|
+
|
1413
|
+
x_opt = (679.9453, 1026.067, 0.1188764, -0.3962336)
|
1414
|
+
f_opt = 5126.4981
|
1415
|
+
|
1416
|
+
assert_allclose(f(x_opt), f_opt, atol=1e-3)
|
1417
|
+
assert_allclose(res.x[:2], x_opt[:2], atol=2e-3)
|
1418
|
+
assert_allclose(res.x[2:], x_opt[2:], atol=2e-3)
|
1419
|
+
assert_allclose(res.fun, f_opt, atol=2e-2)
|
1420
|
+
assert res.success
|
1421
|
+
assert_(np.all(A@res.x >= b))
|
1422
|
+
assert_(np.all(np.array(c1(res.x)) >= -0.001))
|
1423
|
+
assert_(np.all(np.array(c1(res.x)) <= 0.001))
|
1424
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1425
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1426
|
+
|
1427
|
+
@pytest.mark.fail_slow(5)
|
1428
|
+
def test_L9(self):
|
1429
|
+
# Lampinen ([5]) test problem 9
|
1430
|
+
|
1431
|
+
def f(x):
|
1432
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1433
|
+
return x[1]**2 + (x[2]-1)**2
|
1434
|
+
|
1435
|
+
def c1(x):
|
1436
|
+
x = np.hstack(([0], x)) # 1-indexed to match reference
|
1437
|
+
return [x[2] - x[1]**2]
|
1438
|
+
|
1439
|
+
N = NonlinearConstraint(c1, [-.001], [0.001])
|
1440
|
+
|
1441
|
+
bounds = [(-1, 1)]*2
|
1442
|
+
constraints = (N)
|
1443
|
+
res = differential_evolution(f, bounds, strategy='rand1bin', rng=1234,
|
1444
|
+
constraints=constraints)
|
1445
|
+
|
1446
|
+
x_opt = [np.sqrt(2)/2, 0.5]
|
1447
|
+
f_opt = 0.75
|
1448
|
+
|
1449
|
+
assert_allclose(f(x_opt), f_opt)
|
1450
|
+
assert_allclose(np.abs(res.x), x_opt, atol=1e-3)
|
1451
|
+
assert_allclose(res.fun, f_opt, atol=1e-3)
|
1452
|
+
assert res.success
|
1453
|
+
assert_(np.all(np.array(c1(res.x)) >= -0.001))
|
1454
|
+
assert_(np.all(np.array(c1(res.x)) <= 0.001))
|
1455
|
+
assert_(np.all(res.x >= np.array(bounds)[:, 0]))
|
1456
|
+
assert_(np.all(res.x <= np.array(bounds)[:, 1]))
|
1457
|
+
|
1458
|
+
@pytest.mark.fail_slow(10)
|
1459
|
+
def test_integrality(self):
|
1460
|
+
# test fitting discrete distribution to data
|
1461
|
+
rng = np.random.default_rng(6519843218105)
|
1462
|
+
dist = stats.nbinom
|
1463
|
+
shapes = (5, 0.5)
|
1464
|
+
x = dist.rvs(*shapes, size=10000, random_state=rng)
|
1465
|
+
|
1466
|
+
def func(p, *args):
|
1467
|
+
dist, x = args
|
1468
|
+
# negative log-likelihood function
|
1469
|
+
ll = -np.log(dist.pmf(x, *p)).sum(axis=-1)
|
1470
|
+
if np.isnan(ll): # occurs when x is outside of support
|
1471
|
+
ll = np.inf # we don't want that
|
1472
|
+
return ll
|
1473
|
+
|
1474
|
+
integrality = [True, False]
|
1475
|
+
bounds = [(1, 18), (0, 0.95)]
|
1476
|
+
|
1477
|
+
res = differential_evolution(func, bounds, args=(dist, x),
|
1478
|
+
integrality=integrality, polish=False,
|
1479
|
+
rng=rng)
|
1480
|
+
# tolerance has to be fairly relaxed for the second parameter
|
1481
|
+
# because we're fitting a distribution to random variates.
|
1482
|
+
assert res.x[0] == 5
|
1483
|
+
assert_allclose(res.x, shapes, rtol=0.025)
|
1484
|
+
|
1485
|
+
# check that we can still use integrality constraints with polishing
|
1486
|
+
res2 = differential_evolution(func, bounds, args=(dist, x),
|
1487
|
+
integrality=integrality, polish=True,
|
1488
|
+
rng=rng)
|
1489
|
+
|
1490
|
+
def func2(p, *args):
|
1491
|
+
n, dist, x = args
|
1492
|
+
return func(np.array([n, p[0]]), dist, x)
|
1493
|
+
|
1494
|
+
# compare the DE derived solution to an LBFGSB solution (that doesn't
|
1495
|
+
# have to find the integral values). Note we're setting x0 to be the
|
1496
|
+
# output from the first DE result, thereby making the polishing step
|
1497
|
+
# and this minimisation pretty much equivalent.
|
1498
|
+
LBFGSB = minimize(func2, res2.x[1], args=(5, dist, x),
|
1499
|
+
bounds=[(0, 0.95)])
|
1500
|
+
assert_allclose(res2.x[1], LBFGSB.x)
|
1501
|
+
assert res2.fun <= res.fun
|
1502
|
+
|
1503
|
+
def test_integrality_limits(self):
|
1504
|
+
def f(x):
|
1505
|
+
return x
|
1506
|
+
|
1507
|
+
integrality = [True, False, True]
|
1508
|
+
bounds = [(0.2, 1.1), (0.9, 2.2), (3.3, 4.9)]
|
1509
|
+
|
1510
|
+
# no integrality constraints
|
1511
|
+
solver = DifferentialEvolutionSolver(f, bounds=bounds, polish=False,
|
1512
|
+
integrality=False)
|
1513
|
+
assert_allclose(solver.limits[0], [0.2, 0.9, 3.3])
|
1514
|
+
assert_allclose(solver.limits[1], [1.1, 2.2, 4.9])
|
1515
|
+
|
1516
|
+
# with integrality constraints
|
1517
|
+
solver = DifferentialEvolutionSolver(f, bounds=bounds, polish=False,
|
1518
|
+
integrality=integrality)
|
1519
|
+
assert_allclose(solver.limits[0], [0.5, 0.9, 3.5])
|
1520
|
+
assert_allclose(solver.limits[1], [1.5, 2.2, 4.5])
|
1521
|
+
assert_equal(solver.integrality, [True, False, True])
|
1522
|
+
assert solver.polish is False
|
1523
|
+
|
1524
|
+
bounds = [(-1.2, -0.9), (0.9, 2.2), (-10.3, 4.1)]
|
1525
|
+
solver = DifferentialEvolutionSolver(f, bounds=bounds, polish=False,
|
1526
|
+
integrality=integrality)
|
1527
|
+
assert_allclose(solver.limits[0], [-1.5, 0.9, -10.5])
|
1528
|
+
assert_allclose(solver.limits[1], [-0.5, 2.2, 4.5])
|
1529
|
+
|
1530
|
+
# A lower bound of -1.2 is converted to
|
1531
|
+
# np.nextafter(np.ceil(-1.2) - 0.5, np.inf)
|
1532
|
+
# with a similar process to the upper bound. Check that the
|
1533
|
+
# conversions work
|
1534
|
+
assert_allclose(np.round(solver.limits[0]), [-1.0, 1.0, -10.0])
|
1535
|
+
assert_allclose(np.round(solver.limits[1]), [-1.0, 2.0, 4.0])
|
1536
|
+
|
1537
|
+
bounds = [(-10.2, -8.1), (0.9, 2.2), (-10.9, -9.9999)]
|
1538
|
+
solver = DifferentialEvolutionSolver(f, bounds=bounds, polish=False,
|
1539
|
+
integrality=integrality)
|
1540
|
+
assert_allclose(solver.limits[0], [-10.5, 0.9, -10.5])
|
1541
|
+
assert_allclose(solver.limits[1], [-8.5, 2.2, -9.5])
|
1542
|
+
|
1543
|
+
bounds = [(-10.2, -10.1), (0.9, 2.2), (-10.9, -9.9999)]
|
1544
|
+
with pytest.raises(ValueError, match='One of the integrality'):
|
1545
|
+
DifferentialEvolutionSolver(f, bounds=bounds, polish=False,
|
1546
|
+
integrality=integrality)
|
1547
|
+
|
1548
|
+
@pytest.mark.thread_unsafe
|
1549
|
+
@pytest.mark.fail_slow(10)
|
1550
|
+
def test_vectorized(self):
|
1551
|
+
def quadratic(x):
|
1552
|
+
return np.sum(x**2)
|
1553
|
+
|
1554
|
+
def quadratic_vec(x):
|
1555
|
+
return np.sum(x**2, axis=0)
|
1556
|
+
|
1557
|
+
# A vectorized function needs to accept (len(x), S) and return (S,)
|
1558
|
+
with pytest.raises(RuntimeError, match='The vectorized function'):
|
1559
|
+
differential_evolution(quadratic, self.bounds,
|
1560
|
+
vectorized=True, updating='deferred')
|
1561
|
+
|
1562
|
+
# vectorized overrides the updating keyword, check for warning
|
1563
|
+
with warns(UserWarning, match="differential_evolution: the 'vector"):
|
1564
|
+
differential_evolution(quadratic_vec, self.bounds,
|
1565
|
+
vectorized=True)
|
1566
|
+
|
1567
|
+
# vectorized defers to the workers keyword, check for warning
|
1568
|
+
with warns(UserWarning, match="differential_evolution: the 'workers"):
|
1569
|
+
differential_evolution(quadratic_vec, self.bounds,
|
1570
|
+
vectorized=True, workers=map,
|
1571
|
+
updating='deferred')
|
1572
|
+
|
1573
|
+
ncalls = [0]
|
1574
|
+
|
1575
|
+
def rosen_vec(x):
|
1576
|
+
ncalls[0] += 1
|
1577
|
+
return rosen(x)
|
1578
|
+
|
1579
|
+
bounds = [(0, 10), (0, 10)]
|
1580
|
+
res1 = differential_evolution(rosen, bounds, updating='deferred',
|
1581
|
+
rng=1)
|
1582
|
+
res2 = differential_evolution(rosen_vec, bounds, vectorized=True,
|
1583
|
+
updating='deferred', rng=1)
|
1584
|
+
|
1585
|
+
# the two minimisation runs should be functionally equivalent
|
1586
|
+
assert_allclose(res1.x, res2.x)
|
1587
|
+
assert ncalls[0] == res2.nfev
|
1588
|
+
assert res1.nit == res2.nit
|
1589
|
+
|
1590
|
+
def test_vectorized_constraints(self):
|
1591
|
+
def constr_f(x):
|
1592
|
+
return np.array([x[0] + x[1]])
|
1593
|
+
|
1594
|
+
def constr_f2(x):
|
1595
|
+
return np.array([x[0]**2 + x[1], x[0] - x[1]])
|
1596
|
+
|
1597
|
+
nlc1 = NonlinearConstraint(constr_f, -np.inf, 1.9)
|
1598
|
+
nlc2 = NonlinearConstraint(constr_f2, (0.9, 0.5), (2.0, 2.0))
|
1599
|
+
|
1600
|
+
def rosen_vec(x):
|
1601
|
+
# accept an (len(x0), S) array, returning a (S,) array
|
1602
|
+
v = 100 * (x[1:] - x[:-1]**2.0)**2.0
|
1603
|
+
v += (1 - x[:-1])**2.0
|
1604
|
+
return np.squeeze(v)
|
1605
|
+
|
1606
|
+
bounds = [(0, 10), (0, 10)]
|
1607
|
+
|
1608
|
+
res1 = differential_evolution(rosen, bounds, updating='deferred',
|
1609
|
+
rng=1, constraints=[nlc1, nlc2],
|
1610
|
+
polish=False)
|
1611
|
+
res2 = differential_evolution(rosen_vec, bounds, vectorized=True,
|
1612
|
+
updating='deferred', rng=1,
|
1613
|
+
constraints=[nlc1, nlc2],
|
1614
|
+
polish=False)
|
1615
|
+
# the two minimisation runs should be functionally equivalent
|
1616
|
+
assert_allclose(res1.x, res2.x)
|
1617
|
+
|
1618
|
+
def test_constraint_violation_error_message(self):
|
1619
|
+
|
1620
|
+
def func(x):
|
1621
|
+
return np.cos(x[0]) + np.sin(x[1])
|
1622
|
+
|
1623
|
+
# Intentionally infeasible constraints.
|
1624
|
+
c0 = NonlinearConstraint(lambda x: x[1] - (x[0]-1)**2, 0, np.inf)
|
1625
|
+
c1 = NonlinearConstraint(lambda x: x[1] + x[0]**2, -np.inf, 0)
|
1626
|
+
|
1627
|
+
result = differential_evolution(func,
|
1628
|
+
bounds=[(-1, 2), (-1, 1)],
|
1629
|
+
constraints=[c0, c1],
|
1630
|
+
maxiter=10,
|
1631
|
+
polish=False,
|
1632
|
+
rng=864197532)
|
1633
|
+
assert result.success is False
|
1634
|
+
# The numerical value in the error message might be sensitive to
|
1635
|
+
# changes in the implementation. It can be updated if the code is
|
1636
|
+
# changed. The essential part of the test is that there is a number
|
1637
|
+
# after the '=', so if necessary, the text could be reduced to, say,
|
1638
|
+
# "MAXCV = 0.".
|
1639
|
+
assert "MAXCV = 0." in result.message
|
1640
|
+
|
1641
|
+
@pytest.mark.fail_slow(20) # fail-slow exception by request - see gh-20806
|
1642
|
+
def test_strategy_fn(self):
|
1643
|
+
# examines ability to customize strategy by mimicking one of the
|
1644
|
+
# in-built strategies
|
1645
|
+
parameter_count = 4
|
1646
|
+
popsize = 10
|
1647
|
+
bounds = [(0, 10.)] * parameter_count
|
1648
|
+
total_popsize = parameter_count * popsize
|
1649
|
+
mutation = 0.8
|
1650
|
+
recombination = 0.7
|
1651
|
+
|
1652
|
+
calls = [0]
|
1653
|
+
def custom_strategy_fn(candidate, population, rng=None):
|
1654
|
+
calls[0] += 1
|
1655
|
+
trial = np.copy(population[candidate])
|
1656
|
+
fill_point = rng.choice(parameter_count)
|
1657
|
+
|
1658
|
+
pool = np.arange(total_popsize)
|
1659
|
+
rng.shuffle(pool)
|
1660
|
+
idxs = pool[:2 + 1]
|
1661
|
+
idxs = idxs[idxs != candidate][:2]
|
1662
|
+
|
1663
|
+
r0, r1 = idxs[:2]
|
1664
|
+
|
1665
|
+
bprime = (population[0] + mutation *
|
1666
|
+
(population[r0] - population[r1]))
|
1667
|
+
|
1668
|
+
crossovers = rng.uniform(size=parameter_count)
|
1669
|
+
crossovers = crossovers < recombination
|
1670
|
+
crossovers[fill_point] = True
|
1671
|
+
trial = np.where(crossovers, bprime, trial)
|
1672
|
+
return trial
|
1673
|
+
|
1674
|
+
solver = DifferentialEvolutionSolver(
|
1675
|
+
rosen,
|
1676
|
+
bounds,
|
1677
|
+
popsize=popsize,
|
1678
|
+
recombination=recombination,
|
1679
|
+
mutation=mutation,
|
1680
|
+
maxiter=2,
|
1681
|
+
strategy=custom_strategy_fn,
|
1682
|
+
rng=10,
|
1683
|
+
polish=False
|
1684
|
+
)
|
1685
|
+
assert solver.strategy is custom_strategy_fn
|
1686
|
+
solver.solve()
|
1687
|
+
assert calls[0] > 0
|
1688
|
+
|
1689
|
+
# check custom strategy works with updating='deferred'
|
1690
|
+
res = differential_evolution(
|
1691
|
+
rosen, bounds, strategy=custom_strategy_fn, updating='deferred'
|
1692
|
+
)
|
1693
|
+
assert res.success
|
1694
|
+
|
1695
|
+
def custom_strategy_fn(candidate, population, rng=None):
|
1696
|
+
return np.array([1.0, 2.0])
|
1697
|
+
|
1698
|
+
with pytest.raises(RuntimeError, match="strategy*"):
|
1699
|
+
differential_evolution(
|
1700
|
+
rosen,
|
1701
|
+
bounds,
|
1702
|
+
strategy=custom_strategy_fn
|
1703
|
+
)
|