megadetector 5.0.5__py3-none-any.whl → 5.0.7__py3-none-any.whl

{megadetector-5.0.5.dist-info → megadetector-5.0.7.dist-info}/RECORD

@@ -8,29 +8,30 @@ api/batch_processing/api_core/server_utils.py,sha256=oFusP1E29op5DN1nEaR-jQZgREx
 api/batch_processing/api_core/batch_service/score.py,sha256=ZuPQV7O1u9QNPhWVSYxQqvYgXo9p15e-XhnUyuz0vLE,17347
 api/batch_processing/api_core_support/aggregate_results_manually.py,sha256=8yDXbw12G8Y6SOv09tY-0hPXMNG_iRPv6mzxBiccsaU,2275
 api/batch_processing/api_support/summarize_daily_activity.py,sha256=SmRGAMWTKXf9bDXUPsTySMiIg8K1LDkAC8KVBVH_mPg,5383
-api/batch_processing/data_preparation/manage_local_batch.py,sha256=8vzWcHLqnoCIsqj4XhuTIEuamz6zzS0YgruUfi2OMRY,86533
-api/batch_processing/data_preparation/manage_video_batch.py,sha256=WP3YV29xwseRVLBOIHjYbw8gPcbwg3aJM7Mx7uMlAPI,7075
+api/batch_processing/data_preparation/manage_local_batch.py,sha256=Nb9MxJyAJC2e4twWkoGfI-crSSgB9g8Ue28cbbeE5QA,88618
+api/batch_processing/data_preparation/manage_video_batch.py,sha256=fobPIMmfvdqa1OzxsurEYCFVnUTHGrtrGBiCq3xnYHs,9668
 api/batch_processing/integration/digiKam/setup.py,sha256=7P1X3JYrBDXmLUeLRrzxNfDkL5lo-pY8nXsp9Cz8rOI,203
 api/batch_processing/integration/digiKam/xmp_integration.py,sha256=AbGPTe9RjjOkKdiZDSElai61QyfeiLQQqJR2fiJpymA,17775
 api/batch_processing/integration/eMammal/test_scripts/config_template.py,sha256=UnvrgaFRBu59MuVUJa2WpG8ebcOJWcNeZEx6GWuYLzc,73
 api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py,sha256=eIzEKiwzCfifCOCGf-jf8G4dMuzyxQMWlrFzt-Z-nVk,3608
 api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py,sha256=OYMu97p8vprSv03QcnS6aSxPBocn9sgaozfUqq_JpyM,1369
-api/batch_processing/postprocessing/add_max_conf.py,sha256=pqD-I-e0vqtf49Jm-SNhh9u7jhnVlyi4Lf5prNksldU,1529
-api/batch_processing/postprocessing/categorize_detections_by_size.py,sha256=RtoAh2oPDwkOaxkDmD6CZyZXByvPdscMmui5d3lt27o,3338
+api/batch_processing/postprocessing/add_max_conf.py,sha256=y4Xr_OHRxcop3vsLWQJ56eYIemm2HHKqVfvKJonTcQA,1530
+api/batch_processing/postprocessing/categorize_detections_by_size.py,sha256=b_O2OM44zIXewR4RjzeS2ue-32k5jE6KgjiPn8JRxAA,4877
 api/batch_processing/postprocessing/combine_api_outputs.py,sha256=WsOV4EsK9JUCMka1_-u-vinmWc6Ko8B0PD5fmwoXHh0,8233
-api/batch_processing/postprocessing/compare_batch_results.py,sha256=puzEA02yrCjtfjdhur0RSnqyIjG09hvxJQdEMS-srgU,32705
+api/batch_processing/postprocessing/compare_batch_results.py,sha256=65Kq6mChsPElQfjhWgLDmnO9b6igatQvXiasB2YVHno,34652
 api/batch_processing/postprocessing/convert_output_format.py,sha256=aLboVVZdlGUNYOZhme0w8LtYrd04i15oK0apOgZaYWk,12947
-api/batch_processing/postprocessing/load_api_results.py,sha256=oLgUbQg_i3THmlMVKP9_F3yBeqVK_i_9H6b_8e9z64Y,7421
-api/batch_processing/postprocessing/md_to_coco.py,sha256=kvFTBbk4QnosOqot7vnsr8nxIMeA_2ekeyCiyCsnppo,10141
-api/batch_processing/postprocessing/md_to_labelme.py,sha256=kEpI8utZSsTXLtqf7Oned6EHDt5CPVjBVpzvNqjf8oo,7020
+api/batch_processing/postprocessing/load_api_results.py,sha256=1BwpXUUQiGJeOUDfQTiA9thNd5jbSbOU3siTO1_Dw5s,6997
+api/batch_processing/postprocessing/md_to_coco.py,sha256=dRAkCGWtcNy_vsSTkX1h_0DZAsW6zNO7F-8XSkR8wAo,10139
+api/batch_processing/postprocessing/md_to_labelme.py,sha256=lfheIrXqzjq6lInmlYgYq354PrVvH2SPNXKr8e3S_DQ,7075
 api/batch_processing/postprocessing/merge_detections.py,sha256=B4QnqW9nvcEJpXzAK20TVB0t6L8c7PR5OjPy8FX-5Z8,15930
-api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=WkXiFuFAFRaKETGIxk0Vv9lDtHANNHHN6lBz2l5Lw40,66033
+api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=l_uyOTTINq9GBZlHsAnPteEvA-rWmKZH-eWVcqbMPUM,73653
+api/batch_processing/postprocessing/render_detection_confusion_matrix.py,sha256=h-a7tWNBSe3VRUg-Z4aX-ySUzrF8NfiEYWA1lHbZrmo,25040
 api/batch_processing/postprocessing/separate_detections_into_folders.py,sha256=l5NKxDDxROc2EXt8EslrswXAZkQXgWTy5FSqCqa09Ug,28720
-api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=Q4V7RWSjrBCt7VEsakx0c_haHlRdrLSzy0uqD5ELjp4,20809
-api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=crm_UX8jE6JurUHmS2yI-awYn3_MXqvo2xOlFZ_qig8,5475
-api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=-XQ5IKY33y4CR1ELj-DOFbvtH51d-CtB6Dc-wiDOXoE,6899
-api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=Q0dRNGRO6l83pTbqkfiF0qOFsy2wfbpher3fd23Y_TU,2184
-api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=-n7PcULN5hmxy6gU98frgXwDUeTJWZDOnjMVVBkC6YM,54584
+api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=EROwcj4K-abAwzyZjPCQocuayIVma85lV-D6WvvRMuc,26368
+api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=etJK9DmHppMe3WqGXypuilW-n-7hOjOO9w_k1khlaVU,5476
+api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=fYqPZhaL-6cbpKHz96O3Ch65Y8xux2LQ2-ZlMGhOlM0,9053
+api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=YdMvM814TX0ZRTnP7BfowE62PoMoCOYcJOFl69DlKhQ,2189
+api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=D-q20g9kLXCNB8IMyeLYxdMSvipzmgu2buEh--HJrC0,62882
 api/synchronous/api_core/animal_detection_api/api_backend.py,sha256=PJXV0RFb6FoPBmdRug5W_5nbFwY2C_8CvDpFHjDs9w4,4934
 api/synchronous/api_core/animal_detection_api/api_frontend.py,sha256=_FGLf5C2tXQABFEGaA2Kzq05hj_D60BaIfWLCI-Os_4,10690
 api/synchronous/api_core/animal_detection_api/config.py,sha256=yEf7JZwRJCtHEV80kYvnNnUFJNds_AYLhomffwfFQi0,1017
@@ -38,7 +39,7 @@ api/synchronous/api_core/animal_detection_api/data_management/annotations/annota
 api/synchronous/api_core/animal_detection_api/detection/process_video.py,sha256=b2xcQThAdlgirumxynHULYLviCr_q5sCDfdkKEqVFyU,22089
 api/synchronous/api_core/animal_detection_api/detection/pytorch_detector.py,sha256=nI2xctI6FSdbWjSFHYlMT0LTH6CCATOe9DF-I8MLEpc,11505
 api/synchronous/api_core/animal_detection_api/detection/run_detector.py,sha256=LBveNOLE3AWSTcQ1MUbbWXaQIutr9e2vtz6RG2SjlWQ,23821
-api/synchronous/api_core/animal_detection_api/detection/run_detector_batch.py,sha256=ZntMoo1Gb8rRUvFA4RJ9A7SGEZAlHInAIjxeMiGrdGU,41829
+api/synchronous/api_core/animal_detection_api/detection/run_detector_batch.py,sha256=eivQu5yee5WtBmNQRQ2p636Gf8IB5slyrQL4QRZ2HeM,41849
 api/synchronous/api_core/animal_detection_api/detection/run_inference_with_yolov5_val.py,sha256=yxMFxQQDvkydWVpM0ecopDXtPi89gaqMX0TKjyxNyjI,22118
 api/synchronous/api_core/animal_detection_api/detection/run_tiled_inference.py,sha256=cs1IehE2DXj8Nr3CbnYMXqwcFM1vUBT1Rm5We5nlcSM,28785
 api/synchronous/api_core/animal_detection_api/detection/tf_detector.py,sha256=xOO8kzd-Um2X_sAZyop524LM53nipv5pNx8YueGTJrc,6760
@@ -57,39 +58,6 @@ api/synchronous/api_core/animal_detection_api/md_utils/url_utils.py,sha256=aFN7_
 api/synchronous/api_core/animal_detection_api/md_utils/write_html_image_list.py,sha256=myXMdOwUERZWp9p2RPu8TcStCsu2X7aJNtcomlhoeqA,7573
 api/synchronous/api_core/animal_detection_api/md_visualization/visualization_utils.py,sha256=Up8hfM_KYyToIUhTv3sSrXGoYl8Hm57NO5t5AHMW3tk,31680
 api/synchronous/api_core/tests/load_test.py,sha256=Xiq2JFv9mnSHehwrm-grZ1Flv9qtkW-zUrTu1cYPry8,3386
-api/synchronous/api_core/yolov5/detect.py,sha256=qCNxiyz23NscQ9PiK9SfyvsYP4ciHNSydmC1pUwbzgY,13296
-api/synchronous/api_core/yolov5/export.py,sha256=zhGuz5JEkN7wOrwt7TNZby2MQKXaSDD5eGVyV0x4UU4,29941
-api/synchronous/api_core/yolov5/hubconf.py,sha256=lja94O2fNPugd766NWLohGGKe8uYL3CcoCQWqU9NRow,6465
-api/synchronous/api_core/yolov5/train.py,sha256=xvV9cem0nnRkD74GL5b12OT1_zYfjHu_VXzGsfVkKo8,34919
-api/synchronous/api_core/yolov5/val.py,sha256=L1W5ev0MkNpAkC1pHn6PIT_zUEzoNtGtHsk8reyJX-8,19434
-api/synchronous/api_core/yolov5/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-api/synchronous/api_core/yolov5/models/common.py,sha256=3HlH4myzir6ayBakq7afJ8mFjTtefzdm85dTManKvrU,35329
-api/synchronous/api_core/yolov5/models/experimental.py,sha256=mgAH6xBRO9KDK2wUi04NnDTBbH7BG79a601SgVuvneA,4146
-api/synchronous/api_core/yolov5/models/tf.py,sha256=q6E1ihkzvNFO_HevsTUPpGjV5khvVxsOVgD44JEAJXg,25502
-api/synchronous/api_core/yolov5/models/yolo.py,sha256=wCOZqYJ6rTGDDTM7e9KBWIQkzmFz4msSBjyswbtZ3FI,15354
-api/synchronous/api_core/yolov5/utils/__init__.py,sha256=EzJ0SYWEjKTqO81GwH-CaGOHFj2U74_SzPsEfAl4-D4,1093
-api/synchronous/api_core/yolov5/utils/activations.py,sha256=jMA9XaVgjAoRTAZqf5EYzm3Vl-5eAryuHAzDUR6NFJk,3449
-api/synchronous/api_core/yolov5/utils/augmentations.py,sha256=OEpzoz2LsxSze3TV4MqnDTESIRSjRA2GS4zRzWKdDns,11910
-api/synchronous/api_core/yolov5/utils/autoanchor.py,sha256=ED5gl4HWF1ECwoMQ0DIMraFXYkRrbET5oFsigfF8mM0,7443
-api/synchronous/api_core/yolov5/utils/autobatch.py,sha256=l1h-OF7bMrrdkjBY4iINdNfXByv_X9FbLIdEA2peZMA,2600
-api/synchronous/api_core/yolov5/utils/benchmarks.py,sha256=Gja7nJludYFVHLpB6gEn1jOrDphORI4yiYGV7IubQ3w,6325
-api/synchronous/api_core/yolov5/utils/callbacks.py,sha256=A-pteFVbql5vPtMCfQ7GT6HL25lisTMicicLmVfPgAs,2402
-api/synchronous/api_core/yolov5/utils/dataloaders.py,sha256=XFnQcXRCiHnFVNVy0Cas8AVwCGuZK_Bt8AuxyuffHVI,47301
-api/synchronous/api_core/yolov5/utils/downloads.py,sha256=7yrhzoQs9pqperi9TQMXC7B1tqJMBRKtr_PR6USSiWM,7111
-api/synchronous/api_core/yolov5/utils/general.py,sha256=bwXU8Z1S_E1VBKvTBX6XUzL16-j3SmO_ZmgseEyQdr4,41842
-api/synchronous/api_core/yolov5/utils/loss.py,sha256=Yagud7Hc5GUbM2VRD6ghAqwPi8M7LlJjKfFw9nOz8d4,9919
-api/synchronous/api_core/yolov5/utils/metrics.py,sha256=7A2nBrxUDH5lynMRZePALx-tTvBp6pj0I0uRsy8m8ZY,14361
-api/synchronous/api_core/yolov5/utils/plots.py,sha256=LQ_ZuJA1xIZznRDNvglx4qjPu36QOVSrq6p9baCKafg,21021
-api/synchronous/api_core/yolov5/utils/torch_utils.py,sha256=H5PFUbO_hCuH-BFNiLkQPeK9708ggHu1r8sDaA6LLuc,13562
-api/synchronous/api_core/yolov5/utils/aws/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-api/synchronous/api_core/yolov5/utils/aws/resume.py,sha256=GeIf_rNsmIEpmvOPQ7bZp8pF9OPy6287VjbegHlRR0g,1198
-api/synchronous/api_core/yolov5/utils/flask_rest_api/example_request.py,sha256=t2NqIw3dksG9XZCz3-QjwtFCHBbFFIW2TKpXEZr_5bg,368
-api/synchronous/api_core/yolov5/utils/flask_rest_api/restapi.py,sha256=lPY_R2_n1KMcT1R3G7y8d83idT2GmJ6dj5SnZYxtX-M,1410
-api/synchronous/api_core/yolov5/utils/loggers/__init__.py,sha256=GIS8lmdizxGlqhRGgoVROnJxxQNcQhYw08dCQbtkvlQ,8095
-api/synchronous/api_core/yolov5/utils/loggers/wandb/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-api/synchronous/api_core/yolov5/utils/loggers/wandb/log_dataset.py,sha256=C0hoUQUinn56QBkLgCWZpNYZu6xpTKy0tTY0tC_8z44,1032
-api/synchronous/api_core/yolov5/utils/loggers/wandb/sweep.py,sha256=psU3WRTwnzbq7P_lcdT0pyl6rI5DwR6_ALx_ECPAJj8,1213
-api/synchronous/api_core/yolov5/utils/loggers/wandb/wandb_utils.py,sha256=BgWPOU6dFsiG-gTpyFPzsttpoui_eCAMtOklrFquuRc,27586
 classification/aggregate_classifier_probs.py,sha256=1X5hpC2JRj790jyFEWES2RI1UbcjzhGcslhMJpvMpDM,3488
 classification/analyze_failed_images.py,sha256=WG2ubdkClRo6-v3JqD6dQ7X0aah1L_rYry2BHzirOYE,8463
 classification/cache_batchapi_outputs.py,sha256=EyVG8ynGSX3R7aiz6cN7mDhX7miyMg7FnMXnO2OzScQ,6400
@@ -103,7 +71,7 @@ classification/json_to_azcopy_list.py,sha256=o57wLHJPDrP9OPSY-3x81WI3mmcH1DyIOUh
 classification/json_validator.py,sha256=ZizcEPpW1J26p-oGyfvcffBy2voNRKCNXKF8NtxIt5A,26618
 classification/map_classification_categories.py,sha256=2B4K-TdE77VNw8XG1h8X7CuUvw0JSIrALdy6a1FvkXw,10738
 classification/merge_classification_detection_output.py,sha256=2FDTauvkbMZ3putJH837Ux67HTGsCAnGCOXhnnqjt6g,20123
-classification/prepare_classification_script.py,sha256=6BRxiEPSIl3nTVrZHE5qqUGDe_AxAEqnUg7sxMZSFMg,6141
+classification/prepare_classification_script.py,sha256=7xwqws57Fkn0rmH5sADlem9trOJkiriSRwPredeIXho,5952
 classification/prepare_classification_script_mc.py,sha256=IMCsLyGL70cViVTH0eow0sYDM9E81AsBGrctNveXP10,7440
 classification/run_classifier.py,sha256=eBpkZzP7TtrnwOIlc99fTpe1QocmDuERaIw9mXqwAWI,9363
 classification/save_mislabeled.py,sha256=WmOKNXgrvvIkUdehiiWHNiKc5M7q0UM2If0vea0_7K8,3466
@@ -118,108 +86,117 @@ data_management/cct_json_utils.py,sha256=JX5pJh5QLyKDhcXheUYgbRSd99uB9Ui-EfsRZ_F
 data_management/cct_to_csv.py,sha256=urIL8IUByhKZ4FLLa9TKlzT6mu8upLzAPN1WNnDZdIY,3859
 data_management/cct_to_md.py,sha256=0QtqUdUkrema2BSNTeJqHYkDuwOLc7tOQwq1KxTbtPE,4485
 data_management/cct_to_wi.py,sha256=nJKUhLXcZXKE5tAR9UxbqCjeikfaABfB746wpv-1BmI,8336
-data_management/coco_to_yolo.py,sha256=TBg2vfjvSZz1_B06cKRLze6yQJaluwKHdVfoRW1AN_0,24969
-data_management/generate_crops_from_cct.py,sha256=bkNLgYjTIiI8PcLS23VnmGPOUqYMPWmFM3DQjXWDT2A,4286
-data_management/get_image_sizes.py,sha256=lxNvpAHnFvuibRRqjJ_VO1XrfDxwGFTHibG8bkMmHJA,4118
-data_management/labelme_to_coco.py,sha256=F7WZ9-7rnzPgUsrtn9KRXBMElviziiWjLehSd8E6v8A,12925
+data_management/coco_to_yolo.py,sha256=8c-9cCjelKTwMOL6gQc9oAWum7UPxIr0FP_tiK8NyLc,25880
+data_management/generate_crops_from_cct.py,sha256=m6HJ8bB4N50HYV4SXAUV43k1XJl71QZmmWZ4L-9T45Y,4283
+data_management/get_image_sizes.py,sha256=yUCI5zQmA9G_GDaQiApwoafmO37cUi97dw-Ekh5leOE,4220
+data_management/labelme_to_coco.py,sha256=9RpOp-IV5miJag4KInLijR7koH8eZSztKdAmArhoMx4,14204
+data_management/labelme_to_yolo.py,sha256=XjhrmoGxyo1N-N8kueGzmy_m6FWR4SO8sNHFppoH-GQ,8480
+data_management/ocr_tools.py,sha256=8cVJMQvzvv_6HXV8zMR4nJH72-L_f3Dy9IjIb3E32Js,29920
 data_management/read_exif.py,sha256=HGCp5gvD8MHQ0xGGTX2_PD5JHFTdMtqjZ8ql2pt5Fn0,19036
 data_management/remove_exif.py,sha256=_WDrKfRwK0UWCkj4SiLutGCd7-WRaKYoTgLfBWPDhGU,1555
-data_management/resize_coco_dataset.py,sha256=WFlLHOhNVEZrUtzk8-zeVL32-FKlOiMHX3xoQce75k0,7416
-data_management/yolo_output_to_md_output.py,sha256=QsW0iAlnJiOYxdMbDEq9K63DyajFB4YWlcpL4rV9jYc,13487
-data_management/yolo_to_coco.py,sha256=qY-B8PxFtG4vNlwocRXDK-wUeOEbVZnIF6hbxLFe-J4,7226
+data_management/resize_coco_dataset.py,sha256=pG1yVktPSp6Vc3DThrJO7lmo67_KvOdqEtFpwM6QjOA,7398
+data_management/yolo_output_to_md_output.py,sha256=vxUdn4bqg0S67ozvxtnlX77X6S7nCvyZbKAyvCh_Suc,16313
+data_management/yolo_to_coco.py,sha256=Xb9UVO-HHYrkJyxbASWJDZrZCyW3JwBPI_WN5SQHys4,8078
 data_management/annotations/annotation_constants.py,sha256=P2CZCbAE0ImLLfaNRb1SMlP3q1fULWAIjgrYOrF9L0g,1566
 data_management/databases/add_width_and_height_to_db.py,sha256=71mOEK3xo9gbxK1TVZzBA9nNi-1ElmBZbIPKrUm9XG0,619
 data_management/databases/combine_coco_camera_traps_files.py,sha256=cwu_REQXdHWfVLtCvTvFEIvM7z8GwHVoawVuHcWv2aw,6888
-data_management/databases/integrity_check_json_db.py,sha256=x9BO7fDXCfdyHc-oiwVoeesIp_M9Q2bUOdh9DsohTbc,14377
+data_management/databases/integrity_check_json_db.py,sha256=aQe36eEnhxHFpm9XGmFXCf4jsTvfXuBWMfKdIKKN4tU,14535
 data_management/databases/remove_corrupted_images_from_db.py,sha256=Dod8UQDFveAUJlrH9Svcp_HezdILRHp74TbAl3YGf84,6138
 data_management/databases/subset_json_db.py,sha256=UeVn3jlcpEw-K9E-QyRwxdzl7zaV80iv_u4v6kHUd_E,2749
 data_management/importers/add_nacti_sizes.py,sha256=qsBHPyJ7MPzl0vgJX5iErZxWkTJ6QRcyLJ8GM2YBu2U,1172
-data_management/importers/auckland_doc_test_to_json.py,sha256=09MS1_8ZLytlRC5MAcpbrbKxfH6CDLhTOQ9F-10CFTA,12897
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 taxonomy_mapping/retrieve_sample_image.py,sha256=BySUy69DeGwPiIs9Ws5vIILJCTXeVImE5AVoawOiECM,1992
 taxonomy_mapping/simple_image_download.py,sha256=dXXVhhaR_bI-Elmk4Tmjt2ftdYzHbkuJCTzIMOJfLKs,6874
-taxonomy_mapping/species_lookup.py,sha256=wuyrZdFjIGmMdOoRgbON1AHcGEVZ1LjyOhfPE1jTJjY,27402
-taxonomy_mapping/taxonomy_csv_checker.py,sha256=db6Biubc0vLxIYe8fhkEW-GqYulT6tfPe8HOyDf3ksc,4795
+taxonomy_mapping/species_lookup.py,sha256=oRqaUbiH_xULH7z5mkrtaFhacxlyM8KT-V-c4FnNq4w,28303
+taxonomy_mapping/taxonomy_csv_checker.py,sha256=xmV2SBOfQEuZBMGmXyUzbuNxvd_oXKysXkxU6-IhKJg,4874
 taxonomy_mapping/taxonomy_graph.py,sha256=ZDm2enGanBlm8KXWvCndqmeerOp9LREaetSl-Lxy07s,12361
 taxonomy_mapping/validate_lila_category_mappings.py,sha256=CApYVWIZ8TTJ3vvQTgfjIvWDGHpPo-Zn9jqJFaw3DNw,2314
-megadetector-5.0.5.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
-megadetector-5.0.5.dist-info/METADATA,sha256=uxNQ7tegoX833G258AU6HbYlLywar56IDKrHrIiBmqI,7603
-megadetector-5.0.5.dist-info/WHEEL,sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A,92
-megadetector-5.0.5.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
-megadetector-5.0.5.dist-info/RECORD,,
+megadetector-5.0.7.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
+megadetector-5.0.7.dist-info/METADATA,sha256=xgK96jYJkxj6kXvCzY3y8HlYb0-Oa44nmfETb2Ba7xI,7513
+megadetector-5.0.7.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+megadetector-5.0.7.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
+megadetector-5.0.7.dist-info/RECORD,,

{megadetector-5.0.5.dist-info → megadetector-5.0.7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.2)
+Generator: bdist_wheel (0.42.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py

@@ -481,4 +481,4 @@ with open(wi_mapping_table_file,'w') as f:
             
     # ...for each dataset    
 
-# ...with open()
+# ...with open()

taxonomy_mapping/map_new_lila_datasets.py

@@ -15,15 +15,25 @@ import json
 # Created by get_lila_category_list.py
 input_lila_category_list_file = os.path.expanduser('~/lila/lila_categories_list/lila_dataset_to_categories.json')
 
-output_file = os.path.expanduser('~/lila/lila_additions_2022.08.22.csv')
+output_file = os.path.expanduser('~/lila/lila_additions_2023.12.29.csv')
 
 datasets_to_map = [
-    # 'NACTI'
-    # 'Channel Islands Camera Traps'
-    'ENA24'
+    'Trail Camera Images of New Zealand Animals'
     ]
 
 
+#%% Initialize taxonomic lookup
+
+from taxonomy_mapping.species_lookup import (
+    initialize_taxonomy_lookup,
+    get_preferred_taxonomic_match)
+
+# from taxonomy_mapping.species_lookup import (
+#    get_taxonomic_info, print_taxonomy_matche)
+
+initialize_taxonomy_lookup(force_init=False)
+
+
 #%% Read the list of datasets
 
 with open(input_lila_category_list_file,'r') as f:
@@ -57,46 +67,14 @@ for dataset_name in datasets_to_map:
 print('Need to create {} mappings'.format(len(category_mappings)))
 
 
-#%% Initialize taxonomic lookup
-
-from taxonomy_mapping.species_lookup import (
-    initialize_taxonomy_lookup,
-    get_preferred_taxonomic_match)
-
-# from taxonomy_mapping.species_lookup import (
-#    get_taxonomic_info, print_taxonomy_matche)
-
-initialize_taxonomy_lookup()
-
-
-#%% Manual lookup
-
-if False:
-    
-    #%%
-    
-    # q = 'white-throated monkey'
-    q = 'cingulata'
-    taxonomy_preference = 'inat'
-    m = get_preferred_taxonomic_match(q,taxonomy_preference)
-    
-    if m is None:
-        print('No match')
-    else:
-        if m.source != taxonomy_preference:
-            print('\n*** non-preferred match ***\n')
-            # raise ValueError('')
-        print(m.source)
-        print(m.taxonomy_string)
-        import clipboard; clipboard.copy(m.taxonomy_string)
-
-
 #%% Match every query against our taxonomies
 
 output_rows = []
 
 taxonomy_preference = 'inat'
 
+allow_non_preferred_matches = True
+
 # mapping_string = category_mappings[1]; print(mapping_string)
 for mapping_string in category_mappings:
     
@@ -108,7 +86,7 @@ for mapping_string in category_mappings:
 
     taxonomic_match = get_preferred_taxonomic_match(query,taxonomy_preference=taxonomy_preference)
     
-    if taxonomic_match.source == taxonomy_preference:
+    if (taxonomic_match.source == taxonomy_preference) or allow_non_preferred_matches:
     
         output_row = {
             'dataset_name': dataset_name,
@@ -148,3 +126,29 @@ output_df = pd.DataFrame(data=output_rows, columns=[
     'dataset_name', 'query', 'source', 'taxonomy_level',
     'scientific_name', 'common_name', 'taxonomy_string'])
 output_df.to_csv(output_file, index=None, header=True)
+
+
+#%% Manual lookup
+
+if False:
+    
+    #%%
+    
+    # q = 'white-throated monkey'
+    # q = 'cingulata'
+    # q = 'notamacropus'
+    q = 'porzana'
+    taxonomy_preference = 'inat'
+    m = get_preferred_taxonomic_match(q,taxonomy_preference)
+    # print(m.scientific_name); import clipboard; clipboard.copy(m.scientific_name)
+    
+    if m is None:
+        print('No match')
+    else:
+        if m.source != taxonomy_preference:
+            print('\n*** non-preferred match ***\n')
+            # raise ValueError('')
+        print(m.source)
+        print(m.taxonomy_string)
+        # print(m.scientific_name); import clipboard; clipboard.copy(m.scientific_name)
+        import clipboard; clipboard.copy(m.taxonomy_string)

taxonomy_mapping/prepare_lila_taxonomy_release.py

@@ -13,8 +13,9 @@ import os
 import json
 import pandas as pd
 
-lila_taxonomy_file = os.path.expanduser('~/git/agentmorrisprivate/lila-taxonomy/lila-taxonomy-mapping.csv')
-release_taxonomy_file = os.path.expanduser('~/lila/lila-taxonomy-mapping_release.22.08.22.0000.csv')
+lila_taxonomy_file = 'c:/git/agentmorrisprivate/lila-taxonomy/lila-taxonomy-mapping.csv'
+release_taxonomy_file = os.path.expanduser('~/lila/lila-taxonomy-mapping_release.csv')
+# import clipboard; clipboard.copy(release_taxonomy_file)
 
 # Created by get_lila_category_list.py... contains counts for each category
 lila_dataset_to_categories_file = os.path.expanduser('~/lila/lila_categories_list/lila_dataset_to_categories.json')
@@ -129,3 +130,5 @@ for i_row,row in df.iterrows():
 
 df = df.drop('source',axis=1)
 df.to_csv(release_taxonomy_file,header=True,index=False)
+
+print('Wrote final output to {}'.format(release_taxonomy_file))

taxonomy_mapping/preview_lila_taxonomy.py

@@ -15,11 +15,10 @@ from tqdm import tqdm
 import os
 import pandas as pd
 
-# lila_taxonomy_file = r"G:\git\agentmorrisprivate\lila-taxonomy\lila-taxonomy-mapping.csv"
-lila_taxonomy_file = r"G:\temp\lila\lila-taxonomy-mapping_release.22.07.03.1608.csv"
-# lila_taxonomy_file = r"G:\temp\lila\lila_additions_2022.06.29.csv"
+# lila_taxonomy_file = r"c:\git\agentmorrisprivate\lila-taxonomy\lila-taxonomy-mapping.csv"
+lila_taxonomy_file = os.path.expanduser('~/lila/lila_additions_2023.12.29.csv')
 
-preview_base = r'g:\temp\lila\lila_taxonomy_preview'
+preview_base = os.path.expanduser('~/lila/lila_taxonomy_preview')
 os.makedirs(preview_base,exist_ok=True)
 html_output_file = os.path.join(preview_base,'index.html')
 
@@ -172,15 +171,14 @@ for i_row,row in tqdm(df.iterrows(),total=len(df)):
 
 print('\nMade {} taxonomy changes'.format(n_taxonomy_changes))
 
+# Optionally re-write
 if False:
     df.to_csv(lila_taxonomy_file,header=True,index=False)
 
 
 #%% List null mappings
 
-#
-# These should all be things like "unidentified" and "fire"
-#
+# These should all be things like "empty", "unidentified", "fire", "car", etc.
 
 # i_row = 0; row = df.iloc[i_row]
 for i_row,row in df.iterrows():
@@ -393,20 +391,20 @@ remapped_queries = {'papio':'papio+baboon',
 
 import os
 from taxonomy_mapping import retrieve_sample_image
+
 scientific_name_to_paths = {}
 image_base = os.path.join(preview_base,'images')
 images_per_query = 15
 min_valid_images_per_query = 3
 min_valid_image_size = 3000
 
+# TODO: trivially prallelizable
+#
 # i_row = 0; row = df.iloc[i_row]
 for i_row,row in df.iterrows():
     
     s = row['scientific_name']
     
-    # if s != 'mirafra':
-    #    continue
-    
     if (not isinstance(s,str)) or (len(s)==0):
         continue
     
@@ -416,17 +414,17 @@ for i_row,row in df.iterrows():
         query = remapped_queries[query]
         
     query_folder = os.path.join(image_base,query)
+    os.makedirs(query_folder,exist_ok=True)
     
     # Check whether we already have enough images for this query
-    if os.path.isdir(query_folder):
-        image_files = os.listdir(query_folder)
-        image_fullpaths = [os.path.join(query_folder,fn) for fn in image_files]
-        sizes = [os.path.getsize(p) for p in image_fullpaths]
-        sizes_above_threshold = [x for x in sizes if x > min_valid_image_size]
-        if len(sizes_above_threshold) > min_valid_images_per_query:
-            # print('Skipping query {}, already have {} images'.format(s,len(sizes_above_threshold)))
-            continue
-    
+    image_files = os.listdir(query_folder)
+    image_fullpaths = [os.path.join(query_folder,fn) for fn in image_files]
+    sizes = [os.path.getsize(p) for p in image_fullpaths]
+    sizes_above_threshold = [x for x in sizes if x > min_valid_image_size]
+    if len(sizes_above_threshold) > min_valid_images_per_query:
+        print('Skipping query {}, already have {} images'.format(s,len(sizes_above_threshold)))
+        continue
+
     # Check whether we've already run this query for a previous row
     if query in scientific_name_to_paths:
         continue
@@ -448,14 +446,16 @@ from md_utils import path_utils
 all_images = path_utils.recursive_file_list(image_base,False)
 
 for fn in tqdm(all_images):
-    if fn.endswith('.jpeg'):
+    if fn.lower().endswith('.jpeg'):
         new_fn = fn[0:-5] + '.jpg'
-        # print('Renaming {} to {}'.format(fn,new_fn))
         os.rename(fn, new_fn)
 
 
 #%% Choose representative images for each scientific name
 
+# Specifically, sort by size, and take the largest unique sizes. Very small files tend
+# to be bogus thumbnails, etc.
+
 max_images_per_query = 4
 scientific_name_to_preferred_images = {}
 
@@ -506,7 +506,7 @@ for images in scientific_name_to_preferred_images.values():
 print('Using a total of {} images'.format(len(used_images)))
 used_images_set = set(used_images)
 
-import path_utils
+from md_utils import path_utils
 all_images = path_utils.recursive_file_list(image_base,False)
 
 unused_images = []
@@ -523,7 +523,7 @@ for fn in tqdm(unused_images):
 
 #%% Produce HTML preview
 
-with open(html_output_file, 'w') as f:
+with open(html_output_file, 'w', encoding='utf-8') as f:
     
     f.write('<html><head></head><body>\n')
 
@@ -555,10 +555,11 @@ with open(html_output_file, 'w') as f:
         f.write('<p class="speciesinfo_p" style="font-weight:bold;font-size:130%">')
 
         if isinstance(row.scientific_name,str):
-            f.write('{}: <b><u>{}</u></b> mapped to {} {} ({}) ({})</p>\n'.format(
+            output_string = '{}: <b><u>{}</u></b> mapped to {} {} ({}) ({})</p>\n'.format(
                 row.dataset_name, row.query, 
                 row.taxonomy_level, row.scientific_name, common_name_string,
-                row.common_name))
+                row.common_name)
+            f.write(output_string)
         else:
             f.write('{}: <b><u>{}</u></b> unmapped'.format(row.dataset_name,row.query))
 
@@ -586,6 +587,5 @@ with open(html_output_file, 'w') as f:
 
 #%% Open HTML preview
 
-from md_utils.path_utils import open_file # from ai4eutils
+from md_utils.path_utils import open_file
 open_file(html_output_file)
-