endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
@@ -1,97 +1,97 @@
1
- from django.db import models
2
-
3
- class ProductManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- def sum_weights(product_materials):
8
- # sum up the weights
9
- weight = 0
10
- reference_unit = None
11
- for product_material in product_materials:
12
- if not reference_unit:
13
- reference_unit = product_material.unit
14
- else:
15
- assert reference_unit == product_material.unit, "ProductMaterial units do not match"
16
- weight += product_material.quantity
17
-
18
- return weight, reference_unit
19
-
20
- def sum_emissions(product_materials):
21
- # sum up the emissions
22
- emission = 0
23
- reference_unit = None
24
- for product_material in product_materials:
25
- if not reference_unit:
26
- reference_unit = product_material.unit
27
- else:
28
- assert reference_unit == product_material.unit, "ProductMaterial units do not match"
29
- emission, emission_unit = product_material.get_emission()
30
- assert reference_unit == emission_unit, "ProductMaterial units do not match"
31
- emission += emission
32
-
33
- return emission, reference_unit
34
-
35
- class Product(models.Model):
36
- objects = ProductManager()
37
-
38
- name = models.CharField(max_length=255)
39
- name_de = models.CharField(max_length=255, null=True)
40
- name_en = models.CharField(max_length=255, null=True)
41
-
42
- transport_route = models.ForeignKey("TransportRoute", on_delete=models.SET_NULL, null=True)
43
- product_group = models.ForeignKey("ProductGroup", on_delete=models.SET_NULL, null=True)
44
-
45
- def natural_key(self):
46
- return (self.name,)
47
-
48
- def __str__(self):
49
- return self.name
50
-
51
- def get_product_weight(self):
52
- # check if there is a product material weight
53
- from .product_material import ProductMaterial
54
- product_materials = ProductMaterial.objects.filter(product=self, component="product")
55
- if product_materials:
56
- return self.get_product_material_weight()
57
-
58
- # check if there is a product weight
59
- #TODO
60
-
61
- def get_package_weight(self):
62
- # check if there is a package material weight
63
- from .product_material import ProductMaterial
64
- product_materials = ProductMaterial.objects.filter(product=self, component="package")
65
- if product_materials:
66
- return self.get_package_material_weight()
67
-
68
- # check if there is a package weight
69
- #TODO
70
-
71
- def get_product_material_weight(self):
72
- # get all materials with component == "product"
73
- from .product_material import ProductMaterial
74
- product_materials = ProductMaterial.objects.filter(product=self, component="product")
75
-
76
- return sum_weights(product_materials)
77
-
78
- def get_package_material_weight(self):
79
- # get all materials with component == "package"
80
- from .product_material import ProductMaterial
81
- product_materials = ProductMaterial.objects.filter(product=self, component="package")
82
-
83
- return sum_weights(product_materials)
84
-
85
- def get_product_material_emission(self):
86
- # get all materials with component == "product"
87
- from .product_material import ProductMaterial
88
- product_materials = ProductMaterial.objects.filter(product=self, component="product")
89
-
90
- return sum_emissions(product_materials)
91
-
92
- def get_package_material_emission(self):
93
- # get all materials with component == "package"
94
- from .product_material import ProductMaterial
95
- product_materials = ProductMaterial.objects.filter(product=self, component="package")
96
-
97
- return sum_emissions(product_materials)
1
+ from django.db import models
2
+
3
+ class ProductManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ def sum_weights(product_materials):
8
+ # sum up the weights
9
+ weight = 0
10
+ reference_unit = None
11
+ for product_material in product_materials:
12
+ if not reference_unit:
13
+ reference_unit = product_material.unit
14
+ else:
15
+ assert reference_unit == product_material.unit, "ProductMaterial units do not match"
16
+ weight += product_material.quantity
17
+
18
+ return weight, reference_unit
19
+
20
+ def sum_emissions(product_materials):
21
+ # sum up the emissions
22
+ emission = 0
23
+ reference_unit = None
24
+ for product_material in product_materials:
25
+ if not reference_unit:
26
+ reference_unit = product_material.unit
27
+ else:
28
+ assert reference_unit == product_material.unit, "ProductMaterial units do not match"
29
+ emission, emission_unit = product_material.get_emission()
30
+ assert reference_unit == emission_unit, "ProductMaterial units do not match"
31
+ emission += emission
32
+
33
+ return emission, reference_unit
34
+
35
+ class Product(models.Model):
36
+ objects = ProductManager()
37
+
38
+ name = models.CharField(max_length=255)
39
+ name_de = models.CharField(max_length=255, null=True)
40
+ name_en = models.CharField(max_length=255, null=True)
41
+
42
+ transport_route = models.ForeignKey("TransportRoute", on_delete=models.SET_NULL, null=True)
43
+ product_group = models.ForeignKey("ProductGroup", on_delete=models.SET_NULL, null=True)
44
+
45
+ def natural_key(self):
46
+ return (self.name,)
47
+
48
+ def __str__(self):
49
+ return self.name
50
+
51
+ def get_product_weight(self):
52
+ # check if there is a product material weight
53
+ from .product_material import ProductMaterial
54
+ product_materials = ProductMaterial.objects.filter(product=self, component="product")
55
+ if product_materials:
56
+ return self.get_product_material_weight()
57
+
58
+ # check if there is a product weight
59
+ #TODO
60
+
61
+ def get_package_weight(self):
62
+ # check if there is a package material weight
63
+ from .product_material import ProductMaterial
64
+ product_materials = ProductMaterial.objects.filter(product=self, component="package")
65
+ if product_materials:
66
+ return self.get_package_material_weight()
67
+
68
+ # check if there is a package weight
69
+ #TODO
70
+
71
+ def get_product_material_weight(self):
72
+ # get all materials with component == "product"
73
+ from .product_material import ProductMaterial
74
+ product_materials = ProductMaterial.objects.filter(product=self, component="product")
75
+
76
+ return sum_weights(product_materials)
77
+
78
+ def get_package_material_weight(self):
79
+ # get all materials with component == "package"
80
+ from .product_material import ProductMaterial
81
+ product_materials = ProductMaterial.objects.filter(product=self, component="package")
82
+
83
+ return sum_weights(product_materials)
84
+
85
+ def get_product_material_emission(self):
86
+ # get all materials with component == "product"
87
+ from .product_material import ProductMaterial
88
+ product_materials = ProductMaterial.objects.filter(product=self, component="product")
89
+
90
+ return sum_emissions(product_materials)
91
+
92
+ def get_package_material_emission(self):
93
+ # get all materials with component == "package"
94
+ from .product_material import ProductMaterial
95
+ product_materials = ProductMaterial.objects.filter(product=self, component="package")
96
+
97
+ return sum_emissions(product_materials)
@@ -1,19 +1,19 @@
1
- from django.db import models
2
-
3
- class ProductGroupManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- class ProductGroup(models.Model):
8
- objects = ProductGroupManager()
9
-
10
- name = models.CharField(max_length=255)
11
- name_de = models.CharField(max_length=255, null=True)
12
- name_en = models.CharField(max_length=255, null=True)
13
-
14
- def natural_key(self):
15
- return (self.name,)
16
-
17
- def __str__(self):
18
- return self.name
19
-
1
+ from django.db import models
2
+
3
+ class ProductGroupManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ class ProductGroup(models.Model):
8
+ objects = ProductGroupManager()
9
+
10
+ name = models.CharField(max_length=255)
11
+ name_de = models.CharField(max_length=255, null=True)
12
+ name_en = models.CharField(max_length=255, null=True)
13
+
14
+ def natural_key(self):
15
+ return (self.name,)
16
+
17
+ def __str__(self):
18
+ return self.name
19
+
@@ -1,24 +1,24 @@
1
- from django.db import models
2
-
3
- class ProductMaterial(models.Model):
4
- component = models.CharField(max_length=255)
5
- material = models.ForeignKey("Material", on_delete=models.CASCADE)
6
- product = models.ForeignKey("Product", on_delete=models.CASCADE, related_name="product_materials")
7
- unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
8
- quantity = models.FloatField()
9
-
10
- def get_emission(self):
11
- from ..emission import EmissionFactor
12
- emission_factor:EmissionFactor = self.material.emission_factor
13
- if emission_factor is None:
14
- raise Exception("No emission factor for material " + self.material.name + " found.")
15
-
16
- # make sure product_material.unit is the same as emission_factor.unit
17
- if self.unit != emission_factor.unit:
18
- raise Exception("Unit mismatch: " + self.unit.name + " != " + emission_factor.unit.name)
19
-
20
- emmision_value = emission_factor.value * self.quantity
21
- emission_unit = emission_factor.unit
22
- return emmision_value, emission_unit
23
-
24
-
1
+ from django.db import models
2
+
3
+ class ProductMaterial(models.Model):
4
+ component = models.CharField(max_length=255)
5
+ material = models.ForeignKey("Material", on_delete=models.CASCADE)
6
+ product = models.ForeignKey("Product", on_delete=models.CASCADE, related_name="product_materials")
7
+ unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
8
+ quantity = models.FloatField()
9
+
10
+ def get_emission(self):
11
+ from ..emission import EmissionFactor
12
+ emission_factor:EmissionFactor = self.material.emission_factor
13
+ if emission_factor is None:
14
+ raise Exception("No emission factor for material " + self.material.name + " found.")
15
+
16
+ # make sure product_material.unit is the same as emission_factor.unit
17
+ if self.unit != emission_factor.unit:
18
+ raise Exception("Unit mismatch: " + self.unit.name + " != " + emission_factor.unit.name)
19
+
20
+ emmision_value = emission_factor.value * self.quantity
21
+ emission_unit = emission_factor.unit
22
+ return emmision_value, emission_unit
23
+
24
+
@@ -1,26 +1,26 @@
1
- from django.db import models
2
- import pandas as pd
3
-
4
- class ProductWeightManager(models.Manager):
5
- def get_by_natural_key(self, product, product_group, weight):
6
- return self.get(product=product, product_group=product_group, weight=weight)
7
-
8
- class ProductWeight(models.Model):
9
- objects = ProductWeightManager()
10
-
11
- name = models.CharField(max_length=255, null = True)
12
- product = models.ForeignKey("Product", on_delete=models.CASCADE)
13
- measured = models.FloatField(null=True)
14
- verified = models.FloatField(null=True)
15
- manufacturer = models.FloatField(null=True)
16
- unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
17
-
18
- def get_weight(self):
19
- if not pd.isnull(self.verified):
20
- return self.verified
21
- elif not pd.isnull(self.measured):
22
- return self.measured
23
- elif not pd.isnull(self.manufacturer):
24
- return self.manufacturer
25
- else:
26
- return None
1
+ from django.db import models
2
+ import pandas as pd
3
+
4
+ class ProductWeightManager(models.Manager):
5
+ def get_by_natural_key(self, product, product_group, weight):
6
+ return self.get(product=product, product_group=product_group, weight=weight)
7
+
8
+ class ProductWeight(models.Model):
9
+ objects = ProductWeightManager()
10
+
11
+ name = models.CharField(max_length=255, null = True)
12
+ product = models.ForeignKey("Product", on_delete=models.CASCADE)
13
+ measured = models.FloatField(null=True)
14
+ verified = models.FloatField(null=True)
15
+ manufacturer = models.FloatField(null=True)
16
+ unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
17
+
18
+ def get_weight(self):
19
+ if not pd.isnull(self.verified):
20
+ return self.verified
21
+ elif not pd.isnull(self.measured):
22
+ return self.measured
23
+ elif not pd.isnull(self.manufacturer):
24
+ return self.manufacturer
25
+ else:
26
+ return None
@@ -1,99 +1,99 @@
1
- from django.db import models
2
- from typing import List
3
-
4
- class ReferenceProductManager(models.Manager):
5
- def get_by_natural_key(self, product_name:str, product_group_name:str):
6
- return self.get(product__name=product_name, product_group__name=product_group_name)
7
-
8
- class ReferenceProduct(models.Model):
9
- name = models.CharField(max_length=255)
10
- product = models.ForeignKey("Product", on_delete=models.CASCADE)
11
- product_group = models.OneToOneField("ProductGroup", on_delete=models.CASCADE, related_name="reference_product")
12
- emission_factor_total = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, blank = True)
13
- emission_factor_package = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, related_name="reference_product_package")
14
- emission_factor_product = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, related_name="reference_product_product")
15
-
16
- objects = ReferenceProductManager()
17
-
18
- def __str__(self):
19
- return self.product.name + " (" + self.product_group.name + ")"
20
-
21
- def set_emission_factors(self):
22
- from .product import Product
23
- from .product_material import ProductMaterial
24
- from ..emission import EmissionFactor
25
-
26
- product:Product = self.product
27
- materials = product.product_materials.all()
28
- emission_factor_name = f"{self.product_group.name}_{product.name}_total_emission_factor"
29
- emission_factor_package_name = f"{self.product_group.name}_{product.name}_package_emission_factor"
30
- emission_factor_product_name = f"{self.product_group.name}_{product.name}_product_emission_factor"
31
-
32
- product_emissions = 0
33
- package_emissions = 0
34
-
35
- product_weight, product_weight_unit = product.get_product_material_weight()
36
- package_weight, package_weight_unit = product.get_package_material_weight()
37
- product_emission, product_emission_unit = product.get_product_material_emission()
38
- package_emission, package_emission_unit = product.get_package_material_emission()
39
-
40
- total_weight = product_weight + package_weight
41
- total_emission = product_emission + package_emission
42
-
43
- reference_unit = product_weight_unit
44
- assert reference_unit == package_weight_unit, "Package weight units do not match"
45
- assert reference_unit == product_emission_unit, "Product emission units do not match"
46
- assert reference_unit == package_emission_unit, "Package emission units do not match"
47
-
48
- product_emission_factor_value = product_emission / product_weight
49
- package_emission_factor_value = package_emission / package_weight
50
- total_emission_factor_value = total_emission / total_weight
51
-
52
- emission_factor, created = EmissionFactor.objects.get_or_create(
53
- name=emission_factor_name,
54
- defaults={
55
- "name": emission_factor_name,
56
- "value": total_emission_factor_value,
57
- "unit": reference_unit
58
- }
59
- )
60
- self.emission_factor_total = emission_factor
61
-
62
- emission_factor_package, created = EmissionFactor.objects.get_or_create(
63
- name=emission_factor_package_name,
64
- defaults={
65
- "name": emission_factor_package_name,
66
- "value": package_emission_factor_value,
67
- "unit": reference_unit
68
- }
69
- )
70
- self.emission_factor_package = emission_factor_package
71
-
72
- emission_factor_product, created = EmissionFactor.objects.get_or_create(
73
- name=emission_factor_product_name,
74
- defaults={
75
- "name": emission_factor_product_name,
76
- "value": product_emission_factor_value,
77
- "unit": reference_unit
78
- }
79
- )
80
- self.emission_factor_product = emission_factor_product
81
-
82
- self.save()
83
-
84
- def get_emission_factor(self, component:str):
85
- # check if emission_factor_total exists:
86
- if self.emission_factor_total is None:
87
- self.set_emission_factors()
88
-
89
- if component == "total":
90
- return self.emission_factor_total
91
- elif component == "package":
92
- return self.emission_factor_package
93
- elif component == "product":
94
- return self.emission_factor_product
95
- else:
96
- raise Exception("Unknown component: " + component)
97
-
98
-
99
-
1
+ from django.db import models
2
+ from typing import List
3
+
4
+ class ReferenceProductManager(models.Manager):
5
+ def get_by_natural_key(self, product_name:str, product_group_name:str):
6
+ return self.get(product__name=product_name, product_group__name=product_group_name)
7
+
8
+ class ReferenceProduct(models.Model):
9
+ name = models.CharField(max_length=255)
10
+ product = models.ForeignKey("Product", on_delete=models.CASCADE)
11
+ product_group = models.OneToOneField("ProductGroup", on_delete=models.CASCADE, related_name="reference_product")
12
+ emission_factor_total = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, blank = True)
13
+ emission_factor_package = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, related_name="reference_product_package")
14
+ emission_factor_product = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True, related_name="reference_product_product")
15
+
16
+ objects = ReferenceProductManager()
17
+
18
+ def __str__(self):
19
+ return self.product.name + " (" + self.product_group.name + ")"
20
+
21
+ def set_emission_factors(self):
22
+ from .product import Product
23
+ from .product_material import ProductMaterial
24
+ from ..emission import EmissionFactor
25
+
26
+ product:Product = self.product
27
+ materials = product.product_materials.all()
28
+ emission_factor_name = f"{self.product_group.name}_{product.name}_total_emission_factor"
29
+ emission_factor_package_name = f"{self.product_group.name}_{product.name}_package_emission_factor"
30
+ emission_factor_product_name = f"{self.product_group.name}_{product.name}_product_emission_factor"
31
+
32
+ product_emissions = 0
33
+ package_emissions = 0
34
+
35
+ product_weight, product_weight_unit = product.get_product_material_weight()
36
+ package_weight, package_weight_unit = product.get_package_material_weight()
37
+ product_emission, product_emission_unit = product.get_product_material_emission()
38
+ package_emission, package_emission_unit = product.get_package_material_emission()
39
+
40
+ total_weight = product_weight + package_weight
41
+ total_emission = product_emission + package_emission
42
+
43
+ reference_unit = product_weight_unit
44
+ assert reference_unit == package_weight_unit, "Package weight units do not match"
45
+ assert reference_unit == product_emission_unit, "Product emission units do not match"
46
+ assert reference_unit == package_emission_unit, "Package emission units do not match"
47
+
48
+ product_emission_factor_value = product_emission / product_weight
49
+ package_emission_factor_value = package_emission / package_weight
50
+ total_emission_factor_value = total_emission / total_weight
51
+
52
+ emission_factor, created = EmissionFactor.objects.get_or_create(
53
+ name=emission_factor_name,
54
+ defaults={
55
+ "name": emission_factor_name,
56
+ "value": total_emission_factor_value,
57
+ "unit": reference_unit
58
+ }
59
+ )
60
+ self.emission_factor_total = emission_factor
61
+
62
+ emission_factor_package, created = EmissionFactor.objects.get_or_create(
63
+ name=emission_factor_package_name,
64
+ defaults={
65
+ "name": emission_factor_package_name,
66
+ "value": package_emission_factor_value,
67
+ "unit": reference_unit
68
+ }
69
+ )
70
+ self.emission_factor_package = emission_factor_package
71
+
72
+ emission_factor_product, created = EmissionFactor.objects.get_or_create(
73
+ name=emission_factor_product_name,
74
+ defaults={
75
+ "name": emission_factor_product_name,
76
+ "value": product_emission_factor_value,
77
+ "unit": reference_unit
78
+ }
79
+ )
80
+ self.emission_factor_product = emission_factor_product
81
+
82
+ self.save()
83
+
84
+ def get_emission_factor(self, component:str):
85
+ # check if emission_factor_total exists:
86
+ if self.emission_factor_total is None:
87
+ self.set_emission_factors()
88
+
89
+ if component == "total":
90
+ return self.emission_factor_total
91
+ elif component == "package":
92
+ return self.emission_factor_package
93
+ elif component == "product":
94
+ return self.emission_factor_product
95
+ else:
96
+ raise Exception("Unknown component: " + component)
97
+
98
+
99
+