endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
endoreg_db/data/medication_schedule/enoxaparin.yaml CHANGED
@@ -1,26 +1,26 @@
1
- - model: endoreg_db.medication_schedule
2
- fields:
3
- name: "enoxaparin-80mg-twice_daily"
4
- name_de: "Enoxaparin 80mg, 2x täglich"
5
- name_en: "Enoxaparin 80mg, twice daily"
6
- therapy_duration_d: -1
7
- medication: "enoxaparin"
8
- dose: 80
9
- unit: "miligram"
10
- intake_times: [
11
- "daily-morning",
12
- "daily-evening"
13
- ]
14
-
15
- - model: endoreg_db.medication_schedule
16
- fields:
17
- name: "enoxaparin-40mg-one_daily"
18
- name_de: "Enoxaparin 80mg, 1x täglich"
19
- name_en: "Enoxaparin 80mg, once daily"
20
- therapy_duration_d: -1
21
- medication: "enoxaparin"
22
- dose: 40
23
- unit: "miligram"
24
- intake_times: [
25
- "daily-morning"
26
- ]
1
+ - model: endoreg_db.medication_schedule
2
+ fields:
3
+ name: "enoxaparin-80mg-twice_daily"
4
+ name_de: "Enoxaparin 80mg, 2x täglich"
5
+ name_en: "Enoxaparin 80mg, twice daily"
6
+ therapy_duration_d: -1
7
+ medication: "enoxaparin"
8
+ dose: 80
9
+ unit: "miligram"
10
+ intake_times: [
11
+ "daily-morning",
12
+ "daily-evening"
13
+ ]
14
+
15
+ - model: endoreg_db.medication_schedule
16
+ fields:
17
+ name: "enoxaparin-40mg-one_daily"
18
+ name_de: "Enoxaparin 80mg, 1x täglich"
19
+ name_en: "Enoxaparin 80mg, once daily"
20
+ therapy_duration_d: -1
21
+ medication: "enoxaparin"
22
+ dose: 40
23
+ unit: "miligram"
24
+ intake_times: [
25
+ "daily-morning"
26
+ ]
endoreg_db/data/model_type/data.yaml CHANGED
@@ -1,7 +1,7 @@
1
- - model: endoreg_db.model_type
2
- fields:
3
- name: "multilabel_classification"
4
-
5
- - model: endoreg_db.model_type
6
- fields:
1
+ - model: endoreg_db.model_type
2
+ fields:
3
+ name: "multilabel_classification"
4
+
5
+ - model: endoreg_db.model_type
6
+ fields:
7
7
  name: "object_detection"
endoreg_db/data/patient_lab_sample_type/generic.yaml CHANGED
@@ -1,6 +1,6 @@
1
- - model: endoreg_db.patient_lab_sample_type
2
- fields:
3
- name: "generic"
4
- name_de: "generisch"
5
- name_en: "generic"
1
+ - model: endoreg_db.patient_lab_sample_type
2
+ fields:
3
+ name: "generic"
4
+ name_de: "generisch"
5
+ name_en: "generic"
6
6
  description: "Generische Laborprobe"
endoreg_db/data/pdf_type/data.yaml CHANGED
@@ -1,28 +1,28 @@
1
-
2
- - model: endoreg_db.pdf_type
3
- fields:
4
- name: "ukw-endoscopy-examination-report-generic"
5
- patient_info_line: "ukw-examination-generic-patient-info-line"
6
- endoscope_info_line: "ukw-examination-generic-endoscope-info-line"
7
- examiner_info_line: "ukw-examination-generic-examiner-info-line"
8
- cut_off_above_lines: [
9
- "ukw-examination-generic-endoscope-info-line",
10
- "ukw-examination-generic-examiner-info-line"
11
- ]
12
- cut_off_below_lines: [
13
- "ukw-examination-generic-cut-off-below-line-01"
14
- ]
15
-
16
-
17
- - model: endoreg_db.pdf_type
18
- fields:
19
- name: "ukw-endoscopy-histology-report-generic"
20
- patient_info_line: "ukw-histology-generic-patient-info-line"
21
- endoscope_info_line: "ukw-histology-generic-endoscope-info-line"
22
- examiner_info_line: "ukw-histology-generic-examiner-info-line"
23
- cut_off_above_lines: [
24
- "ukw-histology-generic-patient-info-line"
25
- ]
26
- cut_off_below_lines: [
27
- "ukw-endoscopy-histology-cut-off-below-line-flag-01"
28
- ]
1
+
2
+ - model: endoreg_db.pdf_type
3
+ fields:
4
+ name: "ukw-endoscopy-examination-report-generic"
5
+ patient_info_line: "ukw-examination-generic-patient-info-line"
6
+ endoscope_info_line: "ukw-examination-generic-endoscope-info-line"
7
+ examiner_info_line: "ukw-examination-generic-examiner-info-line"
8
+ cut_off_above_lines: [
9
+ "ukw-examination-generic-endoscope-info-line",
10
+ "ukw-examination-generic-examiner-info-line"
11
+ ]
12
+ cut_off_below_lines: [
13
+ "ukw-examination-generic-cut-off-below-line-01"
14
+ ]
15
+
16
+
17
+ - model: endoreg_db.pdf_type
18
+ fields:
19
+ name: "ukw-endoscopy-histology-report-generic"
20
+ patient_info_line: "ukw-histology-generic-patient-info-line"
21
+ endoscope_info_line: "ukw-histology-generic-endoscope-info-line"
22
+ examiner_info_line: "ukw-histology-generic-examiner-info-line"
23
+ cut_off_above_lines: [
24
+ "ukw-histology-generic-patient-info-line"
25
+ ]
26
+ cut_off_below_lines: [
27
+ "ukw-endoscopy-histology-cut-off-below-line-flag-01"
28
+ ]
endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml CHANGED
@@ -1,66 +1,66 @@
1
- - fields:
2
- name: extraction_balloon_escort_2
3
- name_de: Escort II Extraction Balloon
4
- product_group: Balloon
5
- transport_route: generic_overseas
6
- model: endoreg_db.Product
7
- - fields:
8
- name: esophageal_dilator
9
- name_de: Esophageal Dilator
10
- product_group: Bougie
11
- transport_route: generic_europe
12
- model: endoreg_db.Product
13
- - fields:
14
- name: visiglide_2
15
- name_de: VisiGlide 2
16
- product_group: Wire
17
- transport_route: generic_overseas
18
- model: endoreg_db.Product
19
- - fields:
20
- name: peg_freka_15_ch
21
- name_de: Freka PEG CH/FR15
22
- product_group: PEG
23
- transport_route: generic_europe
24
- model: endoreg_db.Product
25
- - fields:
26
- name: biopsy_grasper_hot_radial_jaw_4
27
- name_de: Biopsiezange 4 Hot Radial Jaw
28
- product_group: Instrument
29
- transport_route: generic_overseas
30
- model: endoreg_db.Product
31
- - fields:
32
- name: nitinol_stent_aix_oel
33
- name_de: Nitinol Stent, aix stent OEL
34
- product_group: Metal-Stent
35
- transport_route: generic_europe
36
- model: endoreg_db.Product
37
- - fields:
38
- name: biliary_stent_cotton_leung_sof_flex
39
- name_de: Cotton-Leung Sof-Flex Biliary Stent
40
- product_group: Plastic-Stent
41
- transport_route: generic_overseas
42
- model: endoreg_db.Product
43
- - fields:
44
- name: bite_protector
45
- name_de: "Einmal Bei\xDFring"
46
- product_group: Plastic
47
- transport_route: generic_europe
48
- model: endoreg_db.Product
49
- - fields:
50
- name: pressure_syringe_60_ml
51
- name_de: Druckspritze 60ml System Alliance II
52
- product_group: Plastic-Large
53
- transport_route: generic_overseas
54
- model: endoreg_db.Product
55
- - fields:
56
- name: foliodress_gown_standard
57
- name_de: Foliodress gown Standard
58
- product_group: Coat
59
- transport_route: generic_europe
60
- model: endoreg_db.Product
61
- - fields:
62
- name: absorbant_pad
63
- name_de: Unterlage
64
- product_group: Absorbant-Pad
65
- transport_route: generic_overseas
66
- model: endoreg_db.Product
1
+ - fields:
2
+ name: extraction_balloon_escort_2
3
+ name_de: Escort II Extraction Balloon
4
+ product_group: Balloon
5
+ transport_route: generic_overseas
6
+ model: endoreg_db.Product
7
+ - fields:
8
+ name: esophageal_dilator
9
+ name_de: Esophageal Dilator
10
+ product_group: Bougie
11
+ transport_route: generic_europe
12
+ model: endoreg_db.Product
13
+ - fields:
14
+ name: visiglide_2
15
+ name_de: VisiGlide 2
16
+ product_group: Wire
17
+ transport_route: generic_overseas
18
+ model: endoreg_db.Product
19
+ - fields:
20
+ name: peg_freka_15_ch
21
+ name_de: Freka PEG CH/FR15
22
+ product_group: PEG
23
+ transport_route: generic_europe
24
+ model: endoreg_db.Product
25
+ - fields:
26
+ name: biopsy_grasper_hot_radial_jaw_4
27
+ name_de: Biopsiezange 4 Hot Radial Jaw
28
+ product_group: Instrument
29
+ transport_route: generic_overseas
30
+ model: endoreg_db.Product
31
+ - fields:
32
+ name: nitinol_stent_aix_oel
33
+ name_de: Nitinol Stent, aix stent OEL
34
+ product_group: Metal-Stent
35
+ transport_route: generic_europe
36
+ model: endoreg_db.Product
37
+ - fields:
38
+ name: biliary_stent_cotton_leung_sof_flex
39
+ name_de: Cotton-Leung Sof-Flex Biliary Stent
40
+ product_group: Plastic-Stent
41
+ transport_route: generic_overseas
42
+ model: endoreg_db.Product
43
+ - fields:
44
+ name: bite_protector
45
+ name_de: "Einmal Bei\xDFring"
46
+ product_group: Plastic
47
+ transport_route: generic_europe
48
+ model: endoreg_db.Product
49
+ - fields:
50
+ name: pressure_syringe_60_ml
51
+ name_de: Druckspritze 60ml System Alliance II
52
+ product_group: Plastic-Large
53
+ transport_route: generic_overseas
54
+ model: endoreg_db.Product
55
+ - fields:
56
+ name: foliodress_gown_standard
57
+ name_de: Foliodress gown Standard
58
+ product_group: Coat
59
+ transport_route: generic_europe
60
+ model: endoreg_db.Product
61
+ - fields:
62
+ name: absorbant_pad
63
+ name_de: Unterlage
64
+ product_group: Absorbant-Pad
65
+ transport_route: generic_overseas
66
+ model: endoreg_db.Product
endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml CHANGED
@@ -1,33 +1,33 @@
1
- - fields:
2
- name: Balloon
3
- model: endoreg_db.ProductGroup
4
- - fields:
5
- name: Bougie
6
- model: endoreg_db.ProductGroup
7
- - fields:
8
- name: Wire
9
- model: endoreg_db.ProductGroup
10
- - fields:
11
- name: PEG
12
- model: endoreg_db.ProductGroup
13
- - fields:
14
- name: Instrument
15
- model: endoreg_db.ProductGroup
16
- - fields:
17
- name: Metal-Stent
18
- model: endoreg_db.ProductGroup
19
- - fields:
20
- name: Plastic-Stent
21
- model: endoreg_db.ProductGroup
22
- - fields:
23
- name: Plastic
24
- model: endoreg_db.ProductGroup
25
- - fields:
26
- name: Plastic-Large
27
- model: endoreg_db.ProductGroup
28
- - fields:
29
- name: Coat
30
- model: endoreg_db.ProductGroup
31
- - fields:
32
- name: Absorbant-Pad
33
- model: endoreg_db.ProductGroup
1
+ - fields:
2
+ name: Balloon
3
+ model: endoreg_db.ProductGroup
4
+ - fields:
5
+ name: Bougie
6
+ model: endoreg_db.ProductGroup
7
+ - fields:
8
+ name: Wire
9
+ model: endoreg_db.ProductGroup
10
+ - fields:
11
+ name: PEG
12
+ model: endoreg_db.ProductGroup
13
+ - fields:
14
+ name: Instrument
15
+ model: endoreg_db.ProductGroup
16
+ - fields:
17
+ name: Metal-Stent
18
+ model: endoreg_db.ProductGroup
19
+ - fields:
20
+ name: Plastic-Stent
21
+ model: endoreg_db.ProductGroup
22
+ - fields:
23
+ name: Plastic
24
+ model: endoreg_db.ProductGroup
25
+ - fields:
26
+ name: Plastic-Large
27
+ model: endoreg_db.ProductGroup
28
+ - fields:
29
+ name: Coat
30
+ model: endoreg_db.ProductGroup
31
+ - fields:
32
+ name: Absorbant-Pad
33
+ model: endoreg_db.ProductGroup