endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
@@ -1,26 +1,26 @@
1
- # Generated by Django 4.2.11 on 2024-03-09 17:44
2
-
3
- from django.db import migrations, models
4
-
5
-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0001_initial'),
10
- ]
11
-
12
- operations = [
13
- migrations.CreateModel(
14
- name='RawVideoFile',
15
- fields=[
16
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
17
- ('uuid', models.UUIDField()),
18
- ('file', models.FileField(upload_to='raw_data/')),
19
- ('original_file_name', models.CharField(max_length=255)),
20
- ('hash', models.CharField(max_length=255, unique=True)),
21
- ('uploaded_at', models.DateTimeField(auto_now_add=True)),
22
- ('state_frames_extracted', models.BooleanField(default=False)),
23
- ('frame_dir', models.CharField(max_length=255)),
24
- ],
25
- ),
26
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-09 17:44
2
+
3
+ from django.db import migrations, models
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0001_initial'),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.CreateModel(
14
+ name='RawVideoFile',
15
+ fields=[
16
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
17
+ ('uuid', models.UUIDField()),
18
+ ('file', models.FileField(upload_to='raw_data/')),
19
+ ('original_file_name', models.CharField(max_length=255)),
20
+ ('hash', models.CharField(max_length=255, unique=True)),
21
+ ('uploaded_at', models.DateTimeField(auto_now_add=True)),
22
+ ('state_frames_extracted', models.BooleanField(default=False)),
23
+ ('frame_dir', models.CharField(max_length=255)),
24
+ ],
25
+ ),
26
+ ]
@@ -1,18 +1,18 @@
1
- # Generated by Django 4.2.11 on 2024-03-09 20:44
2
-
3
- from django.db import migrations, models
4
-
5
-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0002_rawvideofile'),
10
- ]
11
-
12
- operations = [
13
- migrations.AddField(
14
- model_name='rawvideofile',
15
- name='frames_required',
16
- field=models.BooleanField(default=True),
17
- ),
18
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-09 20:44
2
+
3
+ from django.db import migrations, models
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0002_rawvideofile'),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.AddField(
14
+ model_name='rawvideofile',
15
+ name='frames_required',
16
+ field=models.BooleanField(default=True),
17
+ ),
18
+ ]
@@ -1,18 +1,18 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 12:08
2
-
3
- from django.db import migrations
4
-
5
-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0003_rawvideofile_frames_required'),
10
- ]
11
-
12
- operations = [
13
- migrations.RenameField(
14
- model_name='rawvideofile',
15
- old_name='hash',
16
- new_name='video_hash',
17
- ),
18
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 12:08
2
+
3
+ from django.db import migrations
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0003_rawvideofile_frames_required'),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.RenameField(
14
+ model_name='rawvideofile',
15
+ old_name='hash',
16
+ new_name='video_hash',
17
+ ),
18
+ ]
@@ -1,56 +1,56 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 13:07
2
-
3
- from django.db import migrations, models
4
- import django.db.models.deletion
5
-
6
-
7
- class Migration(migrations.Migration):
8
-
9
- dependencies = [
10
- ('endoreg_db', '0004_rename_hash_rawvideofile_video_hash'),
11
- ]
12
-
13
- operations = [
14
- migrations.CreateModel(
15
- name='FFMpegMeta',
16
- fields=[
17
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
18
- ('duration', models.FloatField(blank=True, null=True)),
19
- ('width', models.IntegerField(blank=True, null=True)),
20
- ('height', models.IntegerField(blank=True, null=True)),
21
- ('frame_rate', models.FloatField(blank=True, null=True)),
22
- ('video_codec', models.CharField(blank=True, max_length=50, null=True)),
23
- ('audio_codec', models.CharField(blank=True, max_length=50, null=True)),
24
- ('audio_channels', models.IntegerField(blank=True, null=True)),
25
- ('audio_sample_rate', models.IntegerField(blank=True, null=True)),
26
- ],
27
- ),
28
- migrations.RemoveField(
29
- model_name='videoimportmeta',
30
- name='center',
31
- ),
32
- migrations.RemoveField(
33
- model_name='videoimportmeta',
34
- name='endoscope',
35
- ),
36
- migrations.RemoveField(
37
- model_name='videoimportmeta',
38
- name='processor',
39
- ),
40
- migrations.CreateModel(
41
- name='VideoMeta',
42
- fields=[
43
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
44
- ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
45
- ('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
46
- ('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
47
- ('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
48
- ('processor', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
49
- ],
50
- ),
51
- migrations.AddField(
52
- model_name='rawvideofile',
53
- name='video_meta',
54
- field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa'),
55
- ),
56
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 13:07
2
+
3
+ from django.db import migrations, models
4
+ import django.db.models.deletion
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ('endoreg_db', '0004_rename_hash_rawvideofile_video_hash'),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.CreateModel(
15
+ name='FFMpegMeta',
16
+ fields=[
17
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
18
+ ('duration', models.FloatField(blank=True, null=True)),
19
+ ('width', models.IntegerField(blank=True, null=True)),
20
+ ('height', models.IntegerField(blank=True, null=True)),
21
+ ('frame_rate', models.FloatField(blank=True, null=True)),
22
+ ('video_codec', models.CharField(blank=True, max_length=50, null=True)),
23
+ ('audio_codec', models.CharField(blank=True, max_length=50, null=True)),
24
+ ('audio_channels', models.IntegerField(blank=True, null=True)),
25
+ ('audio_sample_rate', models.IntegerField(blank=True, null=True)),
26
+ ],
27
+ ),
28
+ migrations.RemoveField(
29
+ model_name='videoimportmeta',
30
+ name='center',
31
+ ),
32
+ migrations.RemoveField(
33
+ model_name='videoimportmeta',
34
+ name='endoscope',
35
+ ),
36
+ migrations.RemoveField(
37
+ model_name='videoimportmeta',
38
+ name='processor',
39
+ ),
40
+ migrations.CreateModel(
41
+ name='VideoMeta',
42
+ fields=[
43
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
44
+ ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
45
+ ('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
46
+ ('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
47
+ ('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
48
+ ('processor', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
49
+ ],
50
+ ),
51
+ migrations.AddField(
52
+ model_name='rawvideofile',
53
+ name='video_meta',
54
+ field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa'),
55
+ ),
56
+ ]
@@ -1,25 +1,25 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 14:46
2
-
3
- from django.db import migrations, models
4
- import django.db.models.deletion
5
-
6
-
7
- class Migration(migrations.Migration):
8
-
9
- dependencies = [
10
- ('endoreg_db', '0005_ffmpegmeta_remove_videoimportmeta_center_and_more'),
11
- ]
12
-
13
- operations = [
14
- migrations.AddField(
15
- model_name='rawvideofile',
16
- name='center',
17
- field=models.ForeignKey(default=1, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center'),
18
- preserve_default=False,
19
- ),
20
- migrations.AlterField(
21
- model_name='videometa',
22
- name='processor',
23
- field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor'),
24
- ),
25
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 14:46
2
+
3
+ from django.db import migrations, models
4
+ import django.db.models.deletion
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ('endoreg_db', '0005_ffmpegmeta_remove_videoimportmeta_center_and_more'),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AddField(
15
+ model_name='rawvideofile',
16
+ name='center',
17
+ field=models.ForeignKey(default=1, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center'),
18
+ preserve_default=False,
19
+ ),
20
+ migrations.AlterField(
21
+ model_name='videometa',
22
+ name='processor',
23
+ field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor'),
24
+ ),
25
+ ]
@@ -1,19 +1,19 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 15:05
2
-
3
- from django.db import migrations, models
4
- import django.db.models.deletion
5
-
6
-
7
- class Migration(migrations.Migration):
8
-
9
- dependencies = [
10
- ('endoreg_db', '0006_rawvideofile_center_alter_videometa_processor'),
11
- ]
12
-
13
- operations = [
14
- migrations.AddField(
15
- model_name='rawvideofile',
16
- name='processor',
17
- field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor'),
18
- ),
19
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 15:05
2
+
3
+ from django.db import migrations, models
4
+ import django.db.models.deletion
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ('endoreg_db', '0006_rawvideofile_center_alter_videometa_processor'),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AddField(
15
+ model_name='rawvideofile',
16
+ name='processor',
17
+ field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor'),
18
+ ),
19
+ ]
@@ -1,18 +1,18 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 15:45
2
-
3
- from django.db import migrations
4
-
5
-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0007_rawvideofile_processor'),
10
- ]
11
-
12
- operations = [
13
- migrations.RenameField(
14
- model_name='rawvideofile',
15
- old_name='frames_required',
16
- new_name='state_frames_required',
17
- ),
18
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 15:45
2
+
3
+ from django.db import migrations
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0007_rawvideofile_processor'),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.RenameField(
14
+ model_name='rawvideofile',
15
+ old_name='frames_required',
16
+ new_name='state_frames_required',
17
+ ),
18
+ ]
@@ -1,31 +1,31 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 17:44
2
-
3
- from django.db import migrations, models
4
- import django.db.models.deletion
5
-
6
-
7
- class Migration(migrations.Migration):
8
-
9
- dependencies = [
10
- ('endoreg_db', '0008_rename_frames_required_rawvideofile_state_frames_required'),
11
- ]
12
-
13
- operations = [
14
- migrations.CreateModel(
15
- name='SensitiveMeta',
16
- fields=[
17
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
18
- ('examination_date', models.DateField(blank=True, null=True)),
19
- ('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
20
- ('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
21
- ('patient_dob', models.DateField(blank=True, null=True)),
22
- ('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
23
- ('endoscope_serial_number', models.CharField(blank=True, max_length=255, null=True)),
24
- ],
25
- ),
26
- migrations.AddField(
27
- model_name='rawvideofile',
28
- name='sensitive_meta',
29
- field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.sensitivemeta'),
30
- ),
31
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 17:44
2
+
3
+ from django.db import migrations, models
4
+ import django.db.models.deletion
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ('endoreg_db', '0008_rename_frames_required_rawvideofile_state_frames_required'),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.CreateModel(
15
+ name='SensitiveMeta',
16
+ fields=[
17
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
18
+ ('examination_date', models.DateField(blank=True, null=True)),
19
+ ('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
20
+ ('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
21
+ ('patient_dob', models.DateField(blank=True, null=True)),
22
+ ('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
23
+ ('endoscope_serial_number', models.CharField(blank=True, max_length=255, null=True)),
24
+ ],
25
+ ),
26
+ migrations.AddField(
27
+ model_name='rawvideofile',
28
+ name='sensitive_meta',
29
+ field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.sensitivemeta'),
30
+ ),
31
+ ]
@@ -1,18 +1,18 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 17:50
2
-
3
- from django.db import migrations
4
-
5
-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0009_sensitivemeta_rawvideofile_sensitive_meta'),
10
- ]
11
-
12
- operations = [
13
- migrations.RenameField(
14
- model_name='sensitivemeta',
15
- old_name='endoscope_serial_number',
16
- new_name='endoscope_sn',
17
- ),
18
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 17:50
2
+
3
+ from django.db import migrations
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0009_sensitivemeta_rawvideofile_sensitive_meta'),
10
+ ]
11
+
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+ operations = [
13
+ migrations.RenameField(
14
+ model_name='sensitivemeta',
15
+ old_name='endoscope_serial_number',
16
+ new_name='endoscope_sn',
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+ ),
18
+ ]
@@ -1,18 +1,18 @@
1
- # Generated by Django 4.2.11 on 2024-03-10 18:01
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-
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- from django.db import migrations, models
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-
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-
6
- class Migration(migrations.Migration):
7
-
8
- dependencies = [
9
- ('endoreg_db', '0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn'),
10
- ]
11
-
12
- operations = [
13
- migrations.AddField(
14
- model_name='rawvideofile',
15
- name='state_sensitive_data_retrieved',
16
- field=models.BooleanField(default=False),
17
- ),
18
- ]
1
+ # Generated by Django 4.2.11 on 2024-03-10 18:01
2
+
3
+ from django.db import migrations, models
4
+
5
+
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+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ('endoreg_db', '0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn'),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.AddField(
14
+ model_name='rawvideofile',
15
+ name='state_sensitive_data_retrieved',
16
+ field=models.BooleanField(default=False),
17
+ ),
18
+ ]