endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import Event
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
-
6
- MODEL_0 = Event
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": [], # e.g. ["intervention_types"]
17
- "foreign_key_models": [] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import Event
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
+
6
+ MODEL_0 = Event
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": [], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,75 +1,75 @@
1
- from django.conf import settings
2
- from django.core.management.base import BaseCommand
3
- from ...models import (
4
- Examination,
5
- ExaminationType, # Replace 'your_app_name' with the actual app name
6
- ExaminationTime,
7
- ExaminationTimeType,
8
- )
9
- import os
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import EXAMINATION_DATA_DIR
12
-
13
- SOURCE_DIR = EXAMINATION_DATA_DIR
14
-
15
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
- "ExaminationType",
17
- "Examination",
18
- "ExaminationTimeType",
19
- "ExaminationTime"
20
- ]
21
-
22
- IMPORT_METADATA = {
23
- # "": { # same as model name in "import models", e.g. "Intervention"
24
- # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
- # "model": None, # e.g. Intervention
26
- # "foreign_keys": [], # e.g. ["intervention_types"]
27
- # "foreign_key_models": [] # e.g. [InterventionType]
28
- # },
29
- "ExaminationType": {
30
- "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
- "model": ExaminationType, # e.g. Intervention
32
- "foreign_keys": [], # e.g. ["intervention_types"]
33
- "foreign_key_models": [] # e.g. [InterventionType]
34
- },
35
- "Examination": {
36
- "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
- "model": Examination, # e.g. Intervention
38
- "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
- "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
- },
41
- "ExaminationTimeType": {
42
- "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
- "model": ExaminationTimeType, # e.g. Intervention
44
- "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
- "foreign_key_models": [Examination] # e.g. [InterventionType]
46
- },
47
- "ExaminationTime": {
48
- "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
- "model": ExaminationTime, # e.g. Intervention
50
- "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
- "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
- },
53
- }
54
-
55
- class Command(BaseCommand):
56
- help = """Load all .yaml files in the data/intervention directory
57
- into the Intervention and InterventionType model"""
58
-
59
- def add_arguments(self, parser):
60
- parser.add_argument(
61
- '--verbose',
62
- action='store_true',
63
- help='Display verbose output',
64
- )
65
-
66
- def handle(self, *args, **options):
67
- verbose = options['verbose']
68
- for model_name in IMPORT_MODELS:
69
- _metadata = IMPORT_METADATA[model_name]
70
- load_model_data_from_yaml(
71
- self,
72
- model_name,
73
- _metadata,
74
- verbose
1
+ from django.conf import settings
2
+ from django.core.management.base import BaseCommand
3
+ from ...models import (
4
+ Examination,
5
+ ExaminationType, # Replace 'your_app_name' with the actual app name
6
+ ExaminationTime,
7
+ ExaminationTimeType,
8
+ )
9
+ import os
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import EXAMINATION_DATA_DIR
12
+
13
+ SOURCE_DIR = EXAMINATION_DATA_DIR
14
+
15
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
+ "ExaminationType",
17
+ "Examination",
18
+ "ExaminationTimeType",
19
+ "ExaminationTime"
20
+ ]
21
+
22
+ IMPORT_METADATA = {
23
+ # "": { # same as model name in "import models", e.g. "Intervention"
24
+ # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
+ # "model": None, # e.g. Intervention
26
+ # "foreign_keys": [], # e.g. ["intervention_types"]
27
+ # "foreign_key_models": [] # e.g. [InterventionType]
28
+ # },
29
+ "ExaminationType": {
30
+ "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
+ "model": ExaminationType, # e.g. Intervention
32
+ "foreign_keys": [], # e.g. ["intervention_types"]
33
+ "foreign_key_models": [] # e.g. [InterventionType]
34
+ },
35
+ "Examination": {
36
+ "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
+ "model": Examination, # e.g. Intervention
38
+ "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
+ "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
+ },
41
+ "ExaminationTimeType": {
42
+ "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
+ "model": ExaminationTimeType, # e.g. Intervention
44
+ "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
+ "foreign_key_models": [Examination] # e.g. [InterventionType]
46
+ },
47
+ "ExaminationTime": {
48
+ "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
+ "model": ExaminationTime, # e.g. Intervention
50
+ "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
+ "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
+ },
53
+ }
54
+
55
+ class Command(BaseCommand):
56
+ help = """Load all .yaml files in the data/intervention directory
57
+ into the Intervention and InterventionType model"""
58
+
59
+ def add_arguments(self, parser):
60
+ parser.add_argument(
61
+ '--verbose',
62
+ action='store_true',
63
+ help='Display verbose output',
64
+ )
65
+
66
+ def handle(self, *args, **options):
67
+ verbose = options['verbose']
68
+ for model_name in IMPORT_MODELS:
69
+ _metadata = IMPORT_METADATA[model_name]
70
+ load_model_data_from_yaml(
71
+ self,
72
+ model_name,
73
+ _metadata,
74
+ verbose
75
75
  )
@@ -1,113 +1,113 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- CaseTemplateRuleType,
4
- CaseTemplateRuleValueType,
5
- CaseTemplateRuleValue,
6
- CaseTemplateRule,
7
- CaseTemplateType,
8
- CaseTemplate,
9
- SingleCategoricalValueDistribution,
10
- NumericValueDistribution,
11
- MultipleCategoricalValueDistribution,
12
- DateValueDistribution,
13
-
14
- QuizQuestionType,
15
- QuizAnswerType,
16
- QuizQuestion,
17
- QuizAnswer,
18
-
19
- # Other models for ForeignKeys
20
- Unit, Center
21
- )
22
- from collections import OrderedDict
23
-
24
- from ...utils import load_model_data_from_yaml
25
- from ...data import (
26
- CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
- CASE_TEMPLATE_RULE_DATA_DIR,
28
- CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
- CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
- CASE_TEMPLATE_TYPE_DATA_DIR,
31
- CASE_TEMPLATE_DATA_DIR,
32
- )
33
-
34
- IMPORT_METADATA = OrderedDict({
35
- CaseTemplateRuleType.__name__: {
36
- "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
- "model": CaseTemplateRuleType,
38
- "foreign_keys": [],
39
- "foreign_key_models": []
40
- },
41
- CaseTemplateRuleValueType.__name__: {
42
- "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
- "model": CaseTemplateRuleValueType,
44
- "foreign_keys": [],
45
- "foreign_key_models": []
46
- },
47
- CaseTemplateRuleValue.__name__: {
48
- "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
- "model": CaseTemplateRuleValue,
50
- "foreign_keys": ["value_type"],
51
- "foreign_key_models": [CaseTemplateRuleValueType]
52
- },
53
- CaseTemplateRule.__name__: {
54
- "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
- "model": CaseTemplateRule,
56
- "foreign_keys": [
57
- "rule_type",
58
- # "rule_values",
59
- "chained_rules",
60
- "value_type",
61
- "single_categorical_value_distribution",
62
- "numerical_value_distribution",
63
- "multiple_categorical_value_distribution",
64
- "date_value_distribution"
65
- ],
66
- "foreign_key_models": [
67
- CaseTemplateRuleType,
68
- # CaseTemplateRuleValue,
69
- CaseTemplateRule,
70
- CaseTemplateRuleValueType,
71
- SingleCategoricalValueDistribution,
72
- NumericValueDistribution,
73
- MultipleCategoricalValueDistribution,
74
- DateValueDistribution
75
-
76
- ]
77
- },
78
- CaseTemplateType.__name__: {
79
- "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
- "model": CaseTemplateType,
81
- "foreign_keys": [],
82
- "foreign_key_models": []
83
- },
84
- CaseTemplate.__name__: {
85
- "dir": CASE_TEMPLATE_DATA_DIR,
86
- "model": CaseTemplate,
87
- "foreign_keys": ["template_type", "rules"],
88
- "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
- },
90
-
91
- })
92
-
93
- class Command(BaseCommand):
94
- help = """Load all .yaml files in the data/intervention directory
95
- into the Intervention and InterventionType model"""
96
-
97
- def add_arguments(self, parser):
98
- parser.add_argument(
99
- '--verbose',
100
- action='store_true',
101
- help='Display verbose output',
102
- )
103
-
104
- def handle(self, *args, **options):
105
- verbose = options['verbose']
106
- for model_name in IMPORT_METADATA.keys():
107
- _metadata = IMPORT_METADATA[model_name]
108
- load_model_data_from_yaml(
109
- self,
110
- model_name,
111
- _metadata,
112
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ CaseTemplateRuleType,
4
+ CaseTemplateRuleValueType,
5
+ CaseTemplateRuleValue,
6
+ CaseTemplateRule,
7
+ CaseTemplateType,
8
+ CaseTemplate,
9
+ SingleCategoricalValueDistribution,
10
+ NumericValueDistribution,
11
+ MultipleCategoricalValueDistribution,
12
+ DateValueDistribution,
13
+
14
+ QuizQuestionType,
15
+ QuizAnswerType,
16
+ QuizQuestion,
17
+ QuizAnswer,
18
+
19
+ # Other models for ForeignKeys
20
+ Unit, Center
21
+ )
22
+ from collections import OrderedDict
23
+
24
+ from ...utils import load_model_data_from_yaml
25
+ from ...data import (
26
+ CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
+ CASE_TEMPLATE_RULE_DATA_DIR,
28
+ CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
+ CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
+ CASE_TEMPLATE_TYPE_DATA_DIR,
31
+ CASE_TEMPLATE_DATA_DIR,
32
+ )
33
+
34
+ IMPORT_METADATA = OrderedDict({
35
+ CaseTemplateRuleType.__name__: {
36
+ "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
+ "model": CaseTemplateRuleType,
38
+ "foreign_keys": [],
39
+ "foreign_key_models": []
40
+ },
41
+ CaseTemplateRuleValueType.__name__: {
42
+ "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
+ "model": CaseTemplateRuleValueType,
44
+ "foreign_keys": [],
45
+ "foreign_key_models": []
46
+ },
47
+ CaseTemplateRuleValue.__name__: {
48
+ "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
+ "model": CaseTemplateRuleValue,
50
+ "foreign_keys": ["value_type"],
51
+ "foreign_key_models": [CaseTemplateRuleValueType]
52
+ },
53
+ CaseTemplateRule.__name__: {
54
+ "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
+ "model": CaseTemplateRule,
56
+ "foreign_keys": [
57
+ "rule_type",
58
+ # "rule_values",
59
+ "chained_rules",
60
+ "value_type",
61
+ "single_categorical_value_distribution",
62
+ "numerical_value_distribution",
63
+ "multiple_categorical_value_distribution",
64
+ "date_value_distribution"
65
+ ],
66
+ "foreign_key_models": [
67
+ CaseTemplateRuleType,
68
+ # CaseTemplateRuleValue,
69
+ CaseTemplateRule,
70
+ CaseTemplateRuleValueType,
71
+ SingleCategoricalValueDistribution,
72
+ NumericValueDistribution,
73
+ MultipleCategoricalValueDistribution,
74
+ DateValueDistribution
75
+
76
+ ]
77
+ },
78
+ CaseTemplateType.__name__: {
79
+ "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
+ "model": CaseTemplateType,
81
+ "foreign_keys": [],
82
+ "foreign_key_models": []
83
+ },
84
+ CaseTemplate.__name__: {
85
+ "dir": CASE_TEMPLATE_DATA_DIR,
86
+ "model": CaseTemplate,
87
+ "foreign_keys": ["template_type", "rules"],
88
+ "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
+ },
90
+
91
+ })
92
+
93
+ class Command(BaseCommand):
94
+ help = """Load all .yaml files in the data/intervention directory
95
+ into the Intervention and InterventionType model"""
96
+
97
+ def add_arguments(self, parser):
98
+ parser.add_argument(
99
+ '--verbose',
100
+ action='store_true',
101
+ help='Display verbose output',
102
+ )
103
+
104
+ def handle(self, *args, **options):
105
+ verbose = options['verbose']
106
+ for model_name in IMPORT_METADATA.keys():
107
+ _metadata = IMPORT_METADATA[model_name]
108
+ load_model_data_from_yaml(
109
+ self,
110
+ model_name,
111
+ _metadata,
112
+ verbose
113
113
  )
@@ -1,44 +1,44 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- Gender,
4
-
5
- # Other models for ForeignKeys
6
- Unit, Center
7
- )
8
- from collections import OrderedDict
9
-
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import (
12
- GENDER_DATA_DIR,
13
- )
14
-
15
- IMPORT_METADATA = OrderedDict({
16
- Gender.__name__: {
17
- "dir": GENDER_DATA_DIR,
18
- "model": Gender,
19
- "foreign_keys": [],
20
- "foreign_key_models": []
21
- },
22
- })
23
-
24
- class Command(BaseCommand):
25
- help = """Load all .yaml files in the data/intervention directory
26
- into the Intervention and InterventionType model"""
27
-
28
- def add_arguments(self, parser):
29
- parser.add_argument(
30
- '--verbose',
31
- action='store_true',
32
- help='Display verbose output',
33
- )
34
-
35
- def handle(self, *args, **options):
36
- verbose = options['verbose']
37
- for model_name in IMPORT_METADATA.keys():
38
- _metadata = IMPORT_METADATA[model_name]
39
- load_model_data_from_yaml(
40
- self,
41
- model_name,
42
- _metadata,
43
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ Gender,
4
+
5
+ # Other models for ForeignKeys
6
+ Unit, Center
7
+ )
8
+ from collections import OrderedDict
9
+
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import (
12
+ GENDER_DATA_DIR,
13
+ )
14
+
15
+ IMPORT_METADATA = OrderedDict({
16
+ Gender.__name__: {
17
+ "dir": GENDER_DATA_DIR,
18
+ "model": Gender,
19
+ "foreign_keys": [],
20
+ "foreign_key_models": []
21
+ },
22
+ })
23
+
24
+ class Command(BaseCommand):
25
+ help = """Load all .yaml files in the data/intervention directory
26
+ into the Intervention and InterventionType model"""
27
+
28
+ def add_arguments(self, parser):
29
+ parser.add_argument(
30
+ '--verbose',
31
+ action='store_true',
32
+ help='Display verbose output',
33
+ )
34
+
35
+ def handle(self, *args, **options):
36
+ verbose = options['verbose']
37
+ for model_name in IMPORT_METADATA.keys():
38
+ _metadata = IMPORT_METADATA[model_name]
39
+ load_model_data_from_yaml(
40
+ self,
41
+ model_name,
42
+ _metadata,
43
+ verbose
44
44
  )