endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
@@ -1,7 +1,7 @@
1
- - model: endoreg_db.single_categorical_value_distribution
2
- fields:
3
- name: "gender_random"
4
- categories: {
5
- "male": 0.5,
6
- "female": 0.5
1
+ - model: endoreg_db.single_categorical_value_distribution
2
+ fields:
3
+ name: "gender_random"
4
+ categories: {
5
+ "male": 0.5,
6
+ "female": 0.5
7
7
  }
@@ -1,132 +1,132 @@
1
- - fields:
2
- name: material_emission_cardboard
3
- unit: kilogram
4
- value: 0.828
5
- model: EmissionFactor
6
- - fields:
7
- name: material_emission_foil
8
- unit: kilogram
9
- value: 2.574
10
- model: EmissionFactor
11
- - fields:
12
- name: material_emission_gold
13
- unit: kilogram
14
- value: 4.018
15
- model: EmissionFactor
16
- - fields:
17
- name: material_emission_metal
18
- unit: kilogram
19
- value: 4.018
20
- model: EmissionFactor
21
- - fields:
22
- name: material_emission_nickel
23
- unit: kilogram
24
- value: 4.018
25
- model: EmissionFactor
26
- - fields:
27
- name: material_emission_paper
28
- unit: kilogram
29
- value: 0.919
30
- model: EmissionFactor
31
- - fields:
32
- name: material_emission_paper_coated
33
- unit: kilogram
34
- value: 2.0175
35
- model: EmissionFactor
36
- - fields:
37
- name: material_emission_plastic
38
- unit: kilogram
39
- value: 3.116
40
- model: EmissionFactor
41
- - fields:
42
- name: material_emission_plastic_coated
43
- unit: kilogram
44
- value: 3.116
45
- model: EmissionFactor
46
- - fields:
47
- name: material_emission_silicone
48
- unit: kilogram
49
- value: 2.0
50
- model: EmissionFactor
51
- - fields:
52
- name: material_emission_steel
53
- unit: kilogram
54
- value: 4.018
55
- model: EmissionFactor
56
- - fields:
57
- name: material_emission_tantal
58
- unit: kilogram
59
- value: 4.018
60
- model: EmissionFactor
61
- - fields:
62
- name: material_emission_textile
63
- unit: kilogram
64
- value: 2.0
65
- model: EmissionFactor
66
- - fields:
67
- name: material_emission_titan
68
- unit: kilogram
69
- value: 4.018
70
- model: EmissionFactor
71
- - fields:
72
- name: use_resource_emission_ukw_gas
73
- unit: liter
74
- value: 2.01574
75
- model: EmissionFactor
76
- - fields:
77
- name: use_resource_emission_ukw_oil
78
- unit: cubic_meter
79
- value: 3.17522
80
- model: EmissionFactor
81
- - fields:
82
- name: use_resource_emission_ukw_electricity_extern
83
- unit: kilowatt-hours
84
- value: 0.0
85
- model: EmissionFactor
86
- - fields:
87
- name: use_resource_emission_ukw_electricity_selfmade
88
- unit: kilowatt-hours
89
- value: 0.0
90
- model: EmissionFactor
91
- - fields:
92
- name: transport_resource_emission_ukw_gas
93
- unit: liter
94
- value: 0.3434
95
- model: EmissionFactor
96
- - fields:
97
- name: transport_resource_emission_ukw_oil
98
- unit: cubic_meter
99
- value: 0.69723
100
- model: EmissionFactor
101
- - fields:
102
- name: transport_resource_emission_ukw_electricity_extern
103
- unit: kilowatt-hours
104
- value: 0.05048
105
- model: EmissionFactor
106
- - fields:
107
- name: transport_resource_emission_ukw_electricity_selfmade
108
- unit: kilowatt-hours
109
- value: 0.0
110
- model: EmissionFactor
111
-
112
- - fields:
113
- name: transport_product_emission_generic_europe
114
- unit: "kilogram"
115
- value: 0.13213
116
- model: EmissionFactor
117
- - fields:
118
- name: transport_product_emission_generic_overseas
119
- unit: "kilogram"
120
- value: 1.308373
121
- model: EmissionFactor
122
- - fields:
123
- name: waste_emission_medical
124
- unit: "kilogram"
125
- value: 0.0212801937984496
126
- model: EmissionFactor
127
-
128
- - fields:
129
- name: waste_emission_general
130
- unit: "kilogram"
131
- value: 0.0212801937984496
132
- model: EmissionFactor
1
+ - fields:
2
+ name: material_emission_cardboard
3
+ unit: kilogram
4
+ value: 0.828
5
+ model: EmissionFactor
6
+ - fields:
7
+ name: material_emission_foil
8
+ unit: kilogram
9
+ value: 2.574
10
+ model: EmissionFactor
11
+ - fields:
12
+ name: material_emission_gold
13
+ unit: kilogram
14
+ value: 4.018
15
+ model: EmissionFactor
16
+ - fields:
17
+ name: material_emission_metal
18
+ unit: kilogram
19
+ value: 4.018
20
+ model: EmissionFactor
21
+ - fields:
22
+ name: material_emission_nickel
23
+ unit: kilogram
24
+ value: 4.018
25
+ model: EmissionFactor
26
+ - fields:
27
+ name: material_emission_paper
28
+ unit: kilogram
29
+ value: 0.919
30
+ model: EmissionFactor
31
+ - fields:
32
+ name: material_emission_paper_coated
33
+ unit: kilogram
34
+ value: 2.0175
35
+ model: EmissionFactor
36
+ - fields:
37
+ name: material_emission_plastic
38
+ unit: kilogram
39
+ value: 3.116
40
+ model: EmissionFactor
41
+ - fields:
42
+ name: material_emission_plastic_coated
43
+ unit: kilogram
44
+ value: 3.116
45
+ model: EmissionFactor
46
+ - fields:
47
+ name: material_emission_silicone
48
+ unit: kilogram
49
+ value: 2.0
50
+ model: EmissionFactor
51
+ - fields:
52
+ name: material_emission_steel
53
+ unit: kilogram
54
+ value: 4.018
55
+ model: EmissionFactor
56
+ - fields:
57
+ name: material_emission_tantal
58
+ unit: kilogram
59
+ value: 4.018
60
+ model: EmissionFactor
61
+ - fields:
62
+ name: material_emission_textile
63
+ unit: kilogram
64
+ value: 2.0
65
+ model: EmissionFactor
66
+ - fields:
67
+ name: material_emission_titan
68
+ unit: kilogram
69
+ value: 4.018
70
+ model: EmissionFactor
71
+ - fields:
72
+ name: use_resource_emission_ukw_gas
73
+ unit: liter
74
+ value: 2.01574
75
+ model: EmissionFactor
76
+ - fields:
77
+ name: use_resource_emission_ukw_oil
78
+ unit: cubic_meter
79
+ value: 3.17522
80
+ model: EmissionFactor
81
+ - fields:
82
+ name: use_resource_emission_ukw_electricity_extern
83
+ unit: kilowatt-hours
84
+ value: 0.0
85
+ model: EmissionFactor
86
+ - fields:
87
+ name: use_resource_emission_ukw_electricity_selfmade
88
+ unit: kilowatt-hours
89
+ value: 0.0
90
+ model: EmissionFactor
91
+ - fields:
92
+ name: transport_resource_emission_ukw_gas
93
+ unit: liter
94
+ value: 0.3434
95
+ model: EmissionFactor
96
+ - fields:
97
+ name: transport_resource_emission_ukw_oil
98
+ unit: cubic_meter
99
+ value: 0.69723
100
+ model: EmissionFactor
101
+ - fields:
102
+ name: transport_resource_emission_ukw_electricity_extern
103
+ unit: kilowatt-hours
104
+ value: 0.05048
105
+ model: EmissionFactor
106
+ - fields:
107
+ name: transport_resource_emission_ukw_electricity_selfmade
108
+ unit: kilowatt-hours
109
+ value: 0.0
110
+ model: EmissionFactor
111
+
112
+ - fields:
113
+ name: transport_product_emission_generic_europe
114
+ unit: "kilogram"
115
+ value: 0.13213
116
+ model: EmissionFactor
117
+ - fields:
118
+ name: transport_product_emission_generic_overseas
119
+ unit: "kilogram"
120
+ value: 1.308373
121
+ model: EmissionFactor
122
+ - fields:
123
+ name: waste_emission_medical
124
+ unit: "kilogram"
125
+ value: 0.0212801937984496
126
+ model: EmissionFactor
127
+
128
+ - fields:
129
+ name: waste_emission_general
130
+ unit: "kilogram"
131
+ value: 0.0212801937984496
132
+ model: EmissionFactor
@@ -1,11 +1,11 @@
1
- - model: endoreg_db.endoscope_type
2
- fields:
3
- name: "gastroscope"
4
- name_de: "Gastroskop"
5
- name_en: "Gastroscope"
6
-
7
- - model: endoreg_db.endoscope_type
8
- fields:
9
- name: "colonoscope"
10
- name_de: "Koloskop"
1
+ - model: endoreg_db.endoscope_type
2
+ fields:
3
+ name: "gastroscope"
4
+ name_de: "Gastroskop"
5
+ name_en: "Gastroscope"
6
+
7
+ - model: endoreg_db.endoscope_type
8
+ fields:
9
+ name: "colonoscope"
10
+ name_de: "Koloskop"
11
11
  name_en: "Colonoscope"
@@ -1,45 +1,45 @@
1
- - model: endoreg_db.endoscopy_processor
2
- fields:
3
- name: "olympus_cv_1500"
4
- image_width: 1920
5
- image_height: 1080
6
-
7
- endoscope_image_x: 550
8
- endoscope_image_y: 0
9
- endoscope_image_width: 1350
10
- endoscope_image_height: 1080
11
-
12
- examination_date_x: 0
13
- examination_date_y: 0
14
- examination_date_width: 390
15
- examination_date_height: 40
16
-
17
- examination_time_x: 240
18
- examination_time_y: 7
19
- examination_time_width: 115
20
- examination_time_height: 35
21
-
22
- patient_first_name_x: 80
23
- patient_first_name_y: 110
24
- patient_first_name_width: 440
25
- patient_first_name_height: 33
26
-
27
- patient_last_name_x: 70
28
- patient_last_name_y: 83
29
- patient_last_name_width: 450
30
- patient_last_name_height: 27
31
-
32
- patient_dob_x: 70
33
- patient_dob_y: 180
34
- patient_dob_width: 160
35
- patient_dob_height: 50
36
-
37
- endoscope_type_x: 70
38
- endoscope_type_y: 630
39
- endoscope_type_width: 280
40
- endoscope_type_height: 35
41
-
42
- endoscope_sn_x: 70
43
- endoscope_sn_y: 670
44
- endoscope_sn_width: 280
45
- endoscope_sn_height: 35
1
+ - model: endoreg_db.endoscopy_processor
2
+ fields:
3
+ name: "olympus_cv_1500"
4
+ image_width: 1920
5
+ image_height: 1080
6
+
7
+ endoscope_image_x: 550
8
+ endoscope_image_y: 0
9
+ endoscope_image_width: 1350
10
+ endoscope_image_height: 1080
11
+
12
+ examination_date_x: 0
13
+ examination_date_y: 0
14
+ examination_date_width: 390
15
+ examination_date_height: 40
16
+
17
+ examination_time_x: 240
18
+ examination_time_y: 7
19
+ examination_time_width: 115
20
+ examination_time_height: 35
21
+
22
+ patient_first_name_x: 80
23
+ patient_first_name_y: 110
24
+ patient_first_name_width: 440
25
+ patient_first_name_height: 33
26
+
27
+ patient_last_name_x: 70
28
+ patient_last_name_y: 83
29
+ patient_last_name_width: 450
30
+ patient_last_name_height: 27
31
+
32
+ patient_dob_x: 70
33
+ patient_dob_y: 180
34
+ patient_dob_width: 160
35
+ patient_dob_height: 50
36
+
37
+ endoscope_type_x: 70
38
+ endoscope_type_y: 630
39
+ endoscope_type_width: 280
40
+ endoscope_type_height: 35
41
+
42
+ endoscope_sn_x: 70
43
+ endoscope_sn_y: 670
44
+ endoscope_sn_width: 280
45
+ endoscope_sn_height: 35
@@ -1,28 +1,28 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "coro_des_implantation"
4
- name_de: "Koronarstent-Implantation (DES)"
5
- name_en: "Coronary Stent Implantation (DES)"
6
- - model: endoreg_db.event
7
- fields:
8
- name: "coro_bms_implantation"
9
- name_de: "Koronarstent-Implantation (BMS)"
10
- name_en: "Coronary Stent Implantation (BMS)"
11
- - model: endoreg_db.event
12
- fields:
13
- name: "complication_coro_stent_thrombosis"
14
- name_de: "Komplikation: Koronar Stent Thrombose"
15
- name_en: "Complication: Coronary Stent Thrombosis"
16
-
17
- - model: endoreg_db.event
18
- fields:
19
- name: "pulmonary_embolism"
20
- name_de: "Lungenembolie"
21
- name_en: "Pulmonary Embolism"
22
-
23
- - model: endoreg_db.event
24
- fields:
25
- name: "deep_vein_thrombosis"
26
- name_de: "Tiefe Beinvenenthrombose"
27
- name_en: "Deep Vein Thrombosis"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "coro_des_implantation"
4
+ name_de: "Koronarstent-Implantation (DES)"
5
+ name_en: "Coronary Stent Implantation (DES)"
6
+ - model: endoreg_db.event
7
+ fields:
8
+ name: "coro_bms_implantation"
9
+ name_de: "Koronarstent-Implantation (BMS)"
10
+ name_en: "Coronary Stent Implantation (BMS)"
11
+ - model: endoreg_db.event
12
+ fields:
13
+ name: "complication_coro_stent_thrombosis"
14
+ name_de: "Komplikation: Koronar Stent Thrombose"
15
+ name_en: "Complication: Coronary Stent Thrombosis"
16
+
17
+ - model: endoreg_db.event
18
+ fields:
19
+ name: "pulmonary_embolism"
20
+ name_de: "Lungenembolie"
21
+ name_en: "Pulmonary Embolism"
22
+
23
+ - model: endoreg_db.event
24
+ fields:
25
+ name: "deep_vein_thrombosis"
26
+ name_de: "Tiefe Beinvenenthrombose"
27
+ name_en: "Deep Vein Thrombosis"
28
28
 
@@ -1,14 +1,14 @@
1
-
2
- - model: endoreg_db.event
3
- fields:
4
- name: "stroke"
5
- name_de: "Schlaganfall"
6
- name_en: "Stroke"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "transient_ischemic_attack"
11
- name_de: "Transitorische ischämische Attacke"
12
- name_en: "Transient Ischemic Attack"
13
-
1
+
2
+ - model: endoreg_db.event
3
+ fields:
4
+ name: "stroke"
5
+ name_de: "Schlaganfall"
6
+ name_en: "Stroke"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "transient_ischemic_attack"
11
+ name_de: "Transitorische ischämische Attacke"
12
+ name_en: "Transient Ischemic Attack"
13
+
14
14
 
@@ -1,13 +1,13 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
4
- name_de: "Hüft-TEP Operation"
5
- name_en: "Hip replacement surgery"
6
- description: "Hip replacement surgery"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "knee_replacement_surgery"
11
- name_de: "Knie-TEP Operation"
12
- name_en: "Knee replacement surgery"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
4
+ name_de: "Hüft-TEP Operation"
5
+ name_en: "Hip replacement surgery"
6
+ description: "Hip replacement surgery"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "knee_replacement_surgery"
11
+ name_de: "Knie-TEP Operation"
12
+ name_en: "Knee replacement surgery"
13
13
  description: "Knee replacement surgery"
@@ -1,20 +1,20 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "deep_vein_thrombosis"
4
- name_de: "Tiefe Beinvenenthrombose"
5
- name_en: "Deep Vein Thrombosis"
6
- description: "Deep Vein Thrombosis"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "pulmonary_embolism"
11
- name_de: "Lungenembolie"
12
- name_en: "Pulmonary Embolism"
13
- description: "Pulmonary Embolism"
14
-
15
- - model: endoreg_db.event
16
- fields:
17
- name: "recurrent_thrombembolism"
18
- name_de: "Rezidivierende Thrombembolien"
19
- name_en: "Recurrent Thrombembolism"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "deep_vein_thrombosis"
4
+ name_de: "Tiefe Beinvenenthrombose"
5
+ name_en: "Deep Vein Thrombosis"
6
+ description: "Deep Vein Thrombosis"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "pulmonary_embolism"
11
+ name_de: "Lungenembolie"
12
+ name_en: "Pulmonary Embolism"
13
+ description: "Pulmonary Embolism"
14
+
15
+ - model: endoreg_db.event
16
+ fields:
17
+ name: "recurrent_thrombembolism"
18
+ name_de: "Rezidivierende Thrombembolien"
19
+ name_en: "Recurrent Thrombembolism"
20
20
  description: "Recurrent Thrombembolism"
@@ -1,66 +1,66 @@
1
- - model: report.Examination
2
- fields:
3
- name: "colonoscopy"
4
- name_de: "Koloskopie"
5
- name_en: "Colonoscopy"
6
- examination_types: [
7
- "endoscopy"
8
- ]
9
-
10
- - model: report.Examination
11
- fields:
12
- name: "gastroscopy"
13
- name_de: "Gastroskopie"
14
- name_en: "Gastroscopy"
15
- examination_types: [
16
- "endoscopy"
17
- ]
18
-
19
- # endosonography_upper_gi
20
- - model: report.Examination
21
- fields:
22
- name: "endosonography_upper_gi"
23
- name_de: "Endosonographie oberer GI-Trakt"
24
- name_en: "Endosonography Upper GI Tract"
25
- examination_types: [
26
- "endoscopy"
27
- ]
28
-
29
- - model: report.Examination
30
- fields:
31
- name: "endosonography_lower_gi"
32
- name_de: "Endosonographie unterer GI-Trakt"
33
- name_en: "Endosonography Lower GI Tract"
34
- examination_types: [
35
- "endoscopy"
36
- ]
37
-
38
- # ERCP
39
- - model: report.Examination
40
- fields:
41
- name: "ercp"
42
- name_de: "ERCP"
43
- name_en: "ERCP"
44
- examination_types: [
45
- "endoscopy"
46
- ]
47
-
48
- # small bowel endoscopy
49
- - model: report.Examination
50
- fields:
51
- name: "small_bowel_endoscopy"
52
- name_de: "Dünndarmendoskopie"
53
- name_en: "Small Bowel Endoscopy"
54
- examination_types: [
55
- "endoscopy"
56
- ]
57
-
58
- # capsule endoscopy
59
- - model: report.Examination
60
- fields:
61
- name: "capsule_endoscopy"
62
- name_de: "Kapselendoskopie"
63
- name_en: "Capsule Endoscopy"
64
- examination_types: [
65
- "endoscopy"
1
+ - model: report.Examination
2
+ fields:
3
+ name: "colonoscopy"
4
+ name_de: "Koloskopie"
5
+ name_en: "Colonoscopy"
6
+ examination_types: [
7
+ "endoscopy"
8
+ ]
9
+
10
+ - model: report.Examination
11
+ fields:
12
+ name: "gastroscopy"
13
+ name_de: "Gastroskopie"
14
+ name_en: "Gastroscopy"
15
+ examination_types: [
16
+ "endoscopy"
17
+ ]
18
+
19
+ # endosonography_upper_gi
20
+ - model: report.Examination
21
+ fields:
22
+ name: "endosonography_upper_gi"
23
+ name_de: "Endosonographie oberer GI-Trakt"
24
+ name_en: "Endosonography Upper GI Tract"
25
+ examination_types: [
26
+ "endoscopy"
27
+ ]
28
+
29
+ - model: report.Examination
30
+ fields:
31
+ name: "endosonography_lower_gi"
32
+ name_de: "Endosonographie unterer GI-Trakt"
33
+ name_en: "Endosonography Lower GI Tract"
34
+ examination_types: [
35
+ "endoscopy"
36
+ ]
37
+
38
+ # ERCP
39
+ - model: report.Examination
40
+ fields:
41
+ name: "ercp"
42
+ name_de: "ERCP"
43
+ name_en: "ERCP"
44
+ examination_types: [
45
+ "endoscopy"
46
+ ]
47
+
48
+ # small bowel endoscopy
49
+ - model: report.Examination
50
+ fields:
51
+ name: "small_bowel_endoscopy"
52
+ name_de: "Dünndarmendoskopie"
53
+ name_en: "Small Bowel Endoscopy"
54
+ examination_types: [
55
+ "endoscopy"
56
+ ]
57
+
58
+ # capsule endoscopy
59
+ - model: report.Examination
60
+ fields:
61
+ name: "capsule_endoscopy"
62
+ name_de: "Kapselendoskopie"
63
+ name_en: "Capsule Endoscopy"
64
+ examination_types: [
65
+ "endoscopy"
66
66
  ]