endoreg-db 0.3.5__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (341) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +64 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  70. endoreg_db/data/pdf_type/data.yaml +28 -28
  71. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  72. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  73. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  74. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  75. endoreg_db/data/profession/data.yaml +70 -70
  76. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  77. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  78. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  79. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  80. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  81. endoreg_db/data/unit/concentration.yaml +92 -92
  82. endoreg_db/data/unit/data.yaml +17 -17
  83. endoreg_db/data/unit/length.yaml +30 -30
  84. endoreg_db/data/unit/misc.yaml +19 -19
  85. endoreg_db/data/unit/rate.yaml +5 -5
  86. endoreg_db/data/unit/time.yaml +12 -12
  87. endoreg_db/data/unit/volume.yaml +35 -35
  88. endoreg_db/data/unit/weight.yaml +37 -37
  89. endoreg_db/data/waste/data.yaml +11 -11
  90. endoreg_db/forms/__init__.py +2 -2
  91. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  92. endoreg_db/forms/settings/__init__.py +8 -8
  93. endoreg_db/forms/unit.py +5 -5
  94. endoreg_db/management/commands/_load_model_template.py +40 -40
  95. endoreg_db/management/commands/delete_all.py +18 -18
  96. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  97. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  98. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  99. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  100. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  101. endoreg_db/management/commands/import_legacy_images.py +94 -94
  102. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  103. endoreg_db/management/commands/load_active_model_data.py +44 -44
  104. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  105. endoreg_db/management/commands/load_base_db_data.py +128 -128
  106. endoreg_db/management/commands/load_center_data.py +42 -42
  107. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  108. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  109. endoreg_db/management/commands/load_disease_data.py +39 -39
  110. endoreg_db/management/commands/load_distribution_data.py +65 -65
  111. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  112. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  113. endoreg_db/management/commands/load_event_data.py +40 -40
  114. endoreg_db/management/commands/load_examination_data.py +74 -74
  115. endoreg_db/management/commands/load_g_play_data.py +112 -112
  116. endoreg_db/management/commands/load_gender_data.py +43 -43
  117. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  118. endoreg_db/management/commands/load_information_source.py +44 -44
  119. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  120. endoreg_db/management/commands/load_label_data.py +66 -66
  121. endoreg_db/management/commands/load_medication_data.py +40 -40
  122. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  123. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  125. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  126. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  127. endoreg_db/management/commands/load_profession_data.py +43 -43
  128. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  129. endoreg_db/management/commands/load_unit_data.py +45 -45
  130. endoreg_db/management/commands/load_user_groups.py +28 -28
  131. endoreg_db/management/commands/register_ai_model.py +65 -65
  132. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  133. endoreg_db/migrations/0001_initial.py +582 -582
  134. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  135. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  136. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  137. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  138. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  139. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  140. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  141. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  142. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  143. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  144. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  145. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  146. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  147. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  148. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  149. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  150. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  151. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  152. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  153. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  154. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  155. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  156. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  157. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  158. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  159. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  160. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  161. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  162. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  163. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  164. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  165. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  166. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  167. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  168. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  169. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  170. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  171. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  172. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  173. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  174. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  175. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  176. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  177. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  178. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  179. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  180. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  181. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  182. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  183. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  184. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  185. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  186. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  187. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  188. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  189. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  190. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  191. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  192. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  193. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  194. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  195. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  196. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  197. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  198. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  199. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  200. endoreg_db/models/__init__.py +74 -74
  201. endoreg_db/models/ai_model/__init__.py +3 -3
  202. endoreg_db/models/ai_model/active_model.py +9 -9
  203. endoreg_db/models/ai_model/model_meta.py +24 -24
  204. endoreg_db/models/ai_model/model_type.py +25 -25
  205. endoreg_db/models/ai_model/utils.py +8 -8
  206. endoreg_db/models/annotation/__init__.py +1 -1
  207. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  208. endoreg_db/models/annotation/image_classification.py +26 -26
  209. endoreg_db/models/case_template/__init__.py +5 -5
  210. endoreg_db/models/case_template/case_template.py +81 -81
  211. endoreg_db/models/case_template/case_template_rule.py +276 -276
  212. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  213. endoreg_db/models/case_template/case_template_type.py +27 -27
  214. endoreg_db/models/center/__init__.py +4 -4
  215. endoreg_db/models/center/center.py +24 -24
  216. endoreg_db/models/center/center_product.py +33 -33
  217. endoreg_db/models/center/center_resource.py +18 -18
  218. endoreg_db/models/center/center_waste.py +10 -10
  219. endoreg_db/models/data_file/__init__.py +5 -5
  220. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  221. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  222. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  223. endoreg_db/models/data_file/frame.py +45 -45
  224. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  225. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  226. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  227. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  228. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  229. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  230. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  231. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  232. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  233. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  234. endoreg_db/models/data_file/report_file.py +89 -89
  235. endoreg_db/models/data_file/video/__init__.py +6 -6
  236. endoreg_db/models/data_file/video/import_meta.py +25 -25
  237. endoreg_db/models/data_file/video/video.py +25 -25
  238. endoreg_db/models/data_file/video_segment.py +107 -107
  239. endoreg_db/models/disease.py +55 -55
  240. endoreg_db/models/emission/emission_factor.py +19 -19
  241. endoreg_db/models/event.py +21 -21
  242. endoreg_db/models/examination/__init__.py +3 -3
  243. endoreg_db/models/examination/examination.py +26 -26
  244. endoreg_db/models/examination/examination_time.py +27 -27
  245. endoreg_db/models/examination/examination_time_type.py +24 -24
  246. endoreg_db/models/examination/examination_type.py +18 -18
  247. endoreg_db/models/hardware/__init__.py +1 -1
  248. endoreg_db/models/hardware/endoscope.py +44 -44
  249. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  250. endoreg_db/models/information_source.py +29 -29
  251. endoreg_db/models/label/label.py +84 -84
  252. endoreg_db/models/laboratory/lab_value.py +102 -102
  253. endoreg_db/models/legacy_data/__init__.py +3 -3
  254. endoreg_db/models/legacy_data/image.py +34 -34
  255. endoreg_db/models/medication/medication.py +148 -148
  256. endoreg_db/models/other/__init__.py +4 -4
  257. endoreg_db/models/other/distribution.py +215 -215
  258. endoreg_db/models/other/material.py +16 -16
  259. endoreg_db/models/other/resource.py +17 -17
  260. endoreg_db/models/other/transport_route.py +20 -20
  261. endoreg_db/models/other/waste.py +20 -20
  262. endoreg_db/models/patient_examination/__init__.py +35 -35
  263. endoreg_db/models/permissions/__init__.py +44 -44
  264. endoreg_db/models/persons/__init__.py +6 -6
  265. endoreg_db/models/persons/examiner/__init__.py +1 -1
  266. endoreg_db/models/persons/examiner/examiner.py +15 -15
  267. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  268. endoreg_db/models/persons/first_name.py +17 -17
  269. endoreg_db/models/persons/gender.py +22 -22
  270. endoreg_db/models/persons/last_name.py +19 -19
  271. endoreg_db/models/persons/patient/__init__.py +7 -7
  272. endoreg_db/models/persons/patient/case/case.py +30 -30
  273. endoreg_db/models/persons/patient/patient.py +216 -216
  274. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  275. endoreg_db/models/persons/patient/patient_event.py +22 -22
  276. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  277. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  278. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  279. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  280. endoreg_db/models/persons/person.py +31 -31
  281. endoreg_db/models/persons/portal_user_information.py +27 -27
  282. endoreg_db/models/prediction/__init__.py +1 -1
  283. endoreg_db/models/prediction/image_classification.py +37 -37
  284. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  285. endoreg_db/models/product/__init__.py +4 -4
  286. endoreg_db/models/product/product.py +97 -97
  287. endoreg_db/models/product/product_group.py +19 -19
  288. endoreg_db/models/product/product_material.py +24 -24
  289. endoreg_db/models/product/product_weight.py +26 -26
  290. endoreg_db/models/product/reference_product.py +99 -99
  291. endoreg_db/models/questionnaires/__init__.py +114 -114
  292. endoreg_db/models/quiz/__init__.py +1 -1
  293. endoreg_db/models/quiz/quiz_answer.py +41 -41
  294. endoreg_db/models/quiz/quiz_question.py +54 -54
  295. endoreg_db/models/report_reader/__init__.py +1 -1
  296. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  297. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  298. endoreg_db/models/rules/__init__.py +4 -4
  299. endoreg_db/models/rules/rule.py +23 -23
  300. endoreg_db/models/rules/rule_applicator.py +224 -224
  301. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  302. endoreg_db/models/rules/rule_type.py +21 -21
  303. endoreg_db/models/rules/ruleset.py +19 -19
  304. endoreg_db/models/unit.py +21 -21
  305. endoreg_db/queries/__init__.py +4 -4
  306. endoreg_db/queries/annotations/__init__.py +2 -2
  307. endoreg_db/queries/annotations/legacy.py +159 -159
  308. endoreg_db/queries/get/__init__.py +5 -5
  309. endoreg_db/queries/get/center.py +42 -42
  310. endoreg_db/queries/get/model.py +13 -13
  311. endoreg_db/queries/get/patient.py +14 -14
  312. endoreg_db/queries/get/patient_examination.py +20 -20
  313. endoreg_db/queries/get/report_file.py +33 -33
  314. endoreg_db/queries/get/video.py +31 -31
  315. endoreg_db/serializers/__init__.py +9 -9
  316. endoreg_db/serializers/ai_model.py +18 -18
  317. endoreg_db/serializers/annotation.py +17 -17
  318. endoreg_db/serializers/center.py +11 -11
  319. endoreg_db/serializers/examination.py +32 -32
  320. endoreg_db/serializers/frame.py +13 -13
  321. endoreg_db/serializers/hardware.py +20 -20
  322. endoreg_db/serializers/label.py +22 -22
  323. endoreg_db/serializers/patient.py +10 -10
  324. endoreg_db/serializers/prediction.py +15 -15
  325. endoreg_db/serializers/report_file.py +7 -7
  326. endoreg_db/serializers/video.py +27 -27
  327. endoreg_db/tests.py +3 -3
  328. endoreg_db/utils/cropping.py +28 -28
  329. endoreg_db/utils/dataloader.py +92 -92
  330. endoreg_db/utils/file_operations.py +30 -30
  331. endoreg_db/utils/hashs.py +33 -33
  332. endoreg_db/utils/legacy_ocr.py +201 -201
  333. endoreg_db/utils/ocr.py +197 -197
  334. endoreg_db/utils/uuid.py +4 -4
  335. endoreg_db/utils/video_metadata.py +87 -87
  336. endoreg_db/views.py +3 -3
  337. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  338. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  339. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  340. {endoreg_db-0.3.5.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  341. endoreg_db-0.3.5.dist-info/RECORD +0 -357
endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml CHANGED
@@ -1,88 +1,88 @@
1
- - fields:
2
- manufacturer: 0.1862
3
- measured: 0.077
4
- name: weight_extraction_balloon_escort_2
5
- product: extraction_balloon_escort_2
6
- unit: kilogram
7
- verified: 0.074
8
- model: endoreg_db.ProductWeight
9
- - fields:
10
- manufacturer: .nan
11
- measured: .nan
12
- name: weight_esophageal_dilator
13
- product: esophageal_dilator
14
- unit: kilogram
15
- verified: 0.134
16
- model: endoreg_db.ProductWeight
17
- - fields:
18
- manufacturer: 0.27
19
- measured: 0.19
20
- name: weight_visiglide_2
21
- product: visiglide_2
22
- unit: kilogram
23
- verified: 0.194
24
- model: endoreg_db.ProductWeight
25
- - fields:
26
- manufacturer: 0.037
27
- measured: 0.234
28
- name: weight_peg_freka_15_ch
29
- product: peg_freka_15_ch
30
- unit: kilogram
31
- verified: 0.228
32
- model: endoreg_db.ProductWeight
33
- - fields:
34
- manufacturer: 0.15
35
- measured: 0.067
36
- name: weight_biopsy_grasper_hot_radial_jaw_4
37
- product: biopsy_grasper_hot_radial_jaw_4
38
- unit: kilogram
39
- verified: 0.076
40
- model: endoreg_db.ProductWeight
41
- - fields:
42
- manufacturer: .nan
43
- measured: .nan
44
- name: weight_nitinol_stent_aix_oel
45
- product: nitinol_stent_aix_oel
46
- unit: kilogram
47
- verified: 0.413
48
- model: endoreg_db.ProductWeight
49
- - fields:
50
- manufacturer: .nan
51
- measured: 0.061
52
- name: weight_biliary_stent_cotton_leung_sof_flex
53
- product: biliary_stent_cotton_leung_sof_flex
54
- unit: kilogram
55
- verified: 0.058
56
- model: endoreg_db.ProductWeight
57
- - fields:
58
- manufacturer: .nan
59
- measured: 0.014
60
- name: weight_bite_protector
61
- product: bite_protector
62
- unit: kilogram
63
- verified: 0.013
64
- model: endoreg_db.ProductWeight
65
- - fields:
66
- manufacturer: 0.25
67
- measured: 0.146
68
- name: weight_pressure_syringe_60_ml
69
- product: pressure_syringe_60_ml
70
- unit: kilogram
71
- verified: 0.143
72
- model: endoreg_db.ProductWeight
73
- - fields:
74
- manufacturer: .nan
75
- measured: 0.094
76
- name: weight_foliodress_gown_standard
77
- product: foliodress_gown_standard
78
- unit: kilogram
79
- verified: 0.036
80
- model: endoreg_db.ProductWeight
81
- - fields:
82
- manufacturer: .nan
83
- measured: 0.092
84
- name: weight_absorbant_pad
85
- product: absorbant_pad
86
- unit: kilogram
87
- verified: 0.057
88
- model: endoreg_db.ProductWeight
1
+ - fields:
2
+ manufacturer: 0.1862
3
+ measured: 0.077
4
+ name: weight_extraction_balloon_escort_2
5
+ product: extraction_balloon_escort_2
6
+ unit: kilogram
7
+ verified: 0.074
8
+ model: endoreg_db.ProductWeight
9
+ - fields:
10
+ manufacturer: .nan
11
+ measured: .nan
12
+ name: weight_esophageal_dilator
13
+ product: esophageal_dilator
14
+ unit: kilogram
15
+ verified: 0.134
16
+ model: endoreg_db.ProductWeight
17
+ - fields:
18
+ manufacturer: 0.27
19
+ measured: 0.19
20
+ name: weight_visiglide_2
21
+ product: visiglide_2
22
+ unit: kilogram
23
+ verified: 0.194
24
+ model: endoreg_db.ProductWeight
25
+ - fields:
26
+ manufacturer: 0.037
27
+ measured: 0.234
28
+ name: weight_peg_freka_15_ch
29
+ product: peg_freka_15_ch
30
+ unit: kilogram
31
+ verified: 0.228
32
+ model: endoreg_db.ProductWeight
33
+ - fields:
34
+ manufacturer: 0.15
35
+ measured: 0.067
36
+ name: weight_biopsy_grasper_hot_radial_jaw_4
37
+ product: biopsy_grasper_hot_radial_jaw_4
38
+ unit: kilogram
39
+ verified: 0.076
40
+ model: endoreg_db.ProductWeight
41
+ - fields:
42
+ manufacturer: .nan
43
+ measured: .nan
44
+ name: weight_nitinol_stent_aix_oel
45
+ product: nitinol_stent_aix_oel
46
+ unit: kilogram
47
+ verified: 0.413
48
+ model: endoreg_db.ProductWeight
49
+ - fields:
50
+ manufacturer: .nan
51
+ measured: 0.061
52
+ name: weight_biliary_stent_cotton_leung_sof_flex
53
+ product: biliary_stent_cotton_leung_sof_flex
54
+ unit: kilogram
55
+ verified: 0.058
56
+ model: endoreg_db.ProductWeight
57
+ - fields:
58
+ manufacturer: .nan
59
+ measured: 0.014
60
+ name: weight_bite_protector
61
+ product: bite_protector
62
+ unit: kilogram
63
+ verified: 0.013
64
+ model: endoreg_db.ProductWeight
65
+ - fields:
66
+ manufacturer: 0.25
67
+ measured: 0.146
68
+ name: weight_pressure_syringe_60_ml
69
+ product: pressure_syringe_60_ml
70
+ unit: kilogram
71
+ verified: 0.143
72
+ model: endoreg_db.ProductWeight
73
+ - fields:
74
+ manufacturer: .nan
75
+ measured: 0.094
76
+ name: weight_foliodress_gown_standard
77
+ product: foliodress_gown_standard
78
+ unit: kilogram
79
+ verified: 0.036
80
+ model: endoreg_db.ProductWeight
81
+ - fields:
82
+ manufacturer: .nan
83
+ measured: 0.092
84
+ name: weight_absorbant_pad
85
+ product: absorbant_pad
86
+ unit: kilogram
87
+ verified: 0.057
88
+ model: endoreg_db.ProductWeight
endoreg_db/data/profession/data.yaml CHANGED
@@ -1,70 +1,70 @@
1
- - model: endoreg_db.Profession
2
- fields:
3
- name: "nurse"
4
- name_de: "Pflegekraft"
5
- name_en: "Nurse"
6
- description: "Not further specified nurse"
7
-
8
- # endoscopy nurse
9
- - model: endoreg_db.Profession
10
- fields:
11
- name: "endoscopy-nurse"
12
- name_de: "Pflegekraft (Endoskopie)"
13
- name_en: "Endoscopy nurse"
14
- description: "Endoscopy nurse"
15
-
16
- - model: endoreg_db.Profession
17
- fields:
18
- name: "physician"
19
- name_de: "Arzt"
20
- name_en: "Physician"
21
- description: "Not further specified doctor"
22
-
23
- # Physician in training (gastroenterology)
24
- - model: endoreg_db.Profession
25
- fields:
26
- name: "physician-in-training-gastroenterology"
27
- name_de: "Arzt in Weiterbildung Gastroenterologie"
28
- name_en: "Physician in training (gastroenterology)"
29
- description: "Physician in training (gastroenterology)"
30
-
31
- # Physician in training (internal medicine)
32
- - model: endoreg_db.Profession
33
- fields:
34
- name: "physician-in-training-internal-medicine"
35
- name_de: "Arzt in Weiterbildung Innere Medizin"
36
- name_en: "Physician in training (internal medicine)"
37
- description: "Physician in training (internal medicine)"
38
-
39
- # Physician in training (general surgery)
40
- - model: endoreg_db.Profession
41
- fields:
42
- name: "physician-in-training-general-surgery"
43
- name_de: "Arzt in Weiterbildung Allgemeinchirurgie"
44
- name_en: "Physician in training (general surgery)"
45
- description: "Physician in training (general surgery)"
46
-
47
- # Physician (Internal Medicine)
48
- - model: endoreg_db.Profession
49
- fields:
50
- name: "physician-internal-medicine"
51
- name_de: "Arzt Innere Medizin"
52
- name_en: "Physician (Internal Medicine)"
53
- description: "Physician (Internal Medicine)"
54
-
55
- # Physician (Gastroenterology)
56
- - model: endoreg_db.Profession
57
- fields:
58
- name: "physician-gastroenterology"
59
- name_de: "Arzt Gastroenterologie"
60
- name_en: "Physician (Gastroenterology)"
61
- description: "Physician (Gastroenterology)"
62
-
63
- # Physician (General Surgery)
64
- - model: endoreg_db.Profession
65
- fields:
66
- name: "physician-general-surgery"
67
- name_de: "Arzt Allgemeinchirurgie"
68
- name_en: "Physician (General Surgery)"
69
- description: "Physician (General Surgery)"
70
-
1
+ - model: endoreg_db.Profession
2
+ fields:
3
+ name: "nurse"
4
+ name_de: "Pflegekraft"
5
+ name_en: "Nurse"
6
+ description: "Not further specified nurse"
7
+
8
+ # endoscopy nurse
9
+ - model: endoreg_db.Profession
10
+ fields:
11
+ name: "endoscopy-nurse"
12
+ name_de: "Pflegekraft (Endoskopie)"
13
+ name_en: "Endoscopy nurse"
14
+ description: "Endoscopy nurse"
15
+
16
+ - model: endoreg_db.Profession
17
+ fields:
18
+ name: "physician"
19
+ name_de: "Arzt"
20
+ name_en: "Physician"
21
+ description: "Not further specified doctor"
22
+
23
+ # Physician in training (gastroenterology)
24
+ - model: endoreg_db.Profession
25
+ fields:
26
+ name: "physician-in-training-gastroenterology"
27
+ name_de: "Arzt in Weiterbildung Gastroenterologie"
28
+ name_en: "Physician in training (gastroenterology)"
29
+ description: "Physician in training (gastroenterology)"
30
+
31
+ # Physician in training (internal medicine)
32
+ - model: endoreg_db.Profession
33
+ fields:
34
+ name: "physician-in-training-internal-medicine"
35
+ name_de: "Arzt in Weiterbildung Innere Medizin"
36
+ name_en: "Physician in training (internal medicine)"
37
+ description: "Physician in training (internal medicine)"
38
+
39
+ # Physician in training (general surgery)
40
+ - model: endoreg_db.Profession
41
+ fields:
42
+ name: "physician-in-training-general-surgery"
43
+ name_de: "Arzt in Weiterbildung Allgemeinchirurgie"
44
+ name_en: "Physician in training (general surgery)"
45
+ description: "Physician in training (general surgery)"
46
+
47
+ # Physician (Internal Medicine)
48
+ - model: endoreg_db.Profession
49
+ fields:
50
+ name: "physician-internal-medicine"
51
+ name_de: "Arzt Innere Medizin"
52
+ name_en: "Physician (Internal Medicine)"
53
+ description: "Physician (Internal Medicine)"
54
+
55
+ # Physician (Gastroenterology)
56
+ - model: endoreg_db.Profession
57
+ fields:
58
+ name: "physician-gastroenterology"
59
+ name_de: "Arzt Gastroenterologie"
60
+ name_en: "Physician (Gastroenterology)"
61
+ description: "Physician (Gastroenterology)"
62
+
63
+ # Physician (General Surgery)
64
+ - model: endoreg_db.Profession
65
+ fields:
66
+ name: "physician-general-surgery"
67
+ name_de: "Arzt Allgemeinchirurgie"
68
+ name_en: "Physician (General Surgery)"
69
+ description: "Physician (General Surgery)"
70
+
endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml CHANGED
@@ -1,55 +1,55 @@
1
- - fields:
2
- name: reference_balloon_wuerzburg
3
- product: extraction_balloon_escort_2
4
- product_group: Balloon
5
- model: endoreg_db.ReferenceProduct
6
- - fields:
7
- name: reference_bougie_wuerzburg
8
- product: esophageal_dilator
9
- product_group: Bougie
10
- model: endoreg_db.ReferenceProduct
11
- - fields:
12
- name: reference_wire_wuerzburg
13
- product: visiglide_2
14
- product_group: Wire
15
- model: endoreg_db.ReferenceProduct
16
- - fields:
17
- name: reference_peg_wuerzburg
18
- product: peg_freka_15_ch
19
- product_group: PEG
20
- model: endoreg_db.ReferenceProduct
21
- - fields:
22
- name: reference_instrument_wuerzburg
23
- product: biopsy_grasper_hot_radial_jaw_4
24
- product_group: Instrument
25
- model: endoreg_db.ReferenceProduct
26
- - fields:
27
- name: reference_metalstent_wuerzburg
28
- product: nitinol_stent_aix_oel
29
- product_group: Metal-Stent
30
- model: endoreg_db.ReferenceProduct
31
- - fields:
32
- name: reference_plasticstent_wuerzburg
33
- product: biliary_stent_cotton_leung_sof_flex
34
- product_group: Plastic-Stent
35
- model: endoreg_db.ReferenceProduct
36
- - fields:
37
- name: reference_plastic_wuerzburg
38
- product: bite_protector
39
- product_group: Plastic
40
- model: endoreg_db.ReferenceProduct
41
- - fields:
42
- name: reference_plastic-large_wuerzburg
43
- product: pressure_syringe_60_ml
44
- product_group: Plastic-Large
45
- model: endoreg_db.ReferenceProduct
46
- - fields:
47
- name: reference_coat_wuerzburg
48
- product: foliodress_gown_standard
49
- product_group: Coat
50
- model: endoreg_db.ReferenceProduct
51
- - fields:
52
- name: reference_absorbant-pad_wuerzburg
53
- product: absorbant_pad
54
- product_group: Absorbant-Pad
55
- model: endoreg_db.ReferenceProduct
1
+ - fields:
2
+ name: reference_balloon_wuerzburg
3
+ product: extraction_balloon_escort_2
4
+ product_group: Balloon
5
+ model: endoreg_db.ReferenceProduct
6
+ - fields:
7
+ name: reference_bougie_wuerzburg
8
+ product: esophageal_dilator
9
+ product_group: Bougie
10
+ model: endoreg_db.ReferenceProduct
11
+ - fields:
12
+ name: reference_wire_wuerzburg
13
+ product: visiglide_2
14
+ product_group: Wire
15
+ model: endoreg_db.ReferenceProduct
16
+ - fields:
17
+ name: reference_peg_wuerzburg
18
+ product: peg_freka_15_ch
19
+ product_group: PEG
20
+ model: endoreg_db.ReferenceProduct
21
+ - fields:
22
+ name: reference_instrument_wuerzburg
23
+ product: biopsy_grasper_hot_radial_jaw_4
24
+ product_group: Instrument
25
+ model: endoreg_db.ReferenceProduct
26
+ - fields:
27
+ name: reference_metalstent_wuerzburg
28
+ product: nitinol_stent_aix_oel
29
+ product_group: Metal-Stent
30
+ model: endoreg_db.ReferenceProduct
31
+ - fields:
32
+ name: reference_plasticstent_wuerzburg
33
+ product: biliary_stent_cotton_leung_sof_flex
34
+ product_group: Plastic-Stent
35
+ model: endoreg_db.ReferenceProduct
36
+ - fields:
37
+ name: reference_plastic_wuerzburg
38
+ product: bite_protector
39
+ product_group: Plastic
40
+ model: endoreg_db.ReferenceProduct
41
+ - fields:
42
+ name: reference_plastic-large_wuerzburg
43
+ product: pressure_syringe_60_ml
44
+ product_group: Plastic-Large
45
+ model: endoreg_db.ReferenceProduct
46
+ - fields:
47
+ name: reference_coat_wuerzburg
48
+ product: foliodress_gown_standard
49
+ product_group: Coat
50
+ model: endoreg_db.ReferenceProduct
51
+ - fields:
52
+ name: reference_absorbant-pad_wuerzburg
53
+ product: absorbant_pad
54
+ product_group: Absorbant-Pad
55
+ model: endoreg_db.ReferenceProduct
endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml CHANGED
@@ -1,26 +1,26 @@
1
- # yaml definitions for report reader flag objects
2
- # PATIENT_INFO_LINE_FLAG = "Patient: "
3
- # ENDOSCOPE_INFO_LINE_FLAG = "Gerät: "
4
- # EXAMINER_INFO_LINE_FLAG = "1. Unters.:"
5
- # CUT_OFF_BELOW_LINE_FLAG = "________________"
6
-
7
- - model: endoreg_db.report_reader_flag
8
- fields:
9
- name: "ukw-examination-generic-patient-info-line"
10
- value: "Patient: "
11
-
12
- - model: endoreg_db.report_reader_flag
13
- fields:
14
- name: "ukw-examination-generic-endoscope-info-line"
15
- value: "Gerät: "
16
-
17
- - model: endoreg_db.report_reader_flag
18
- fields:
19
- name: "ukw-examination-generic-examiner-info-line"
20
- value: "1. Unters.:"
21
-
22
- - model: endoreg_db.report_reader_flag
23
- fields:
24
- name: "ukw-examination-generic-cut-off-below-line-01"
25
- value: "________________"
26
-
1
+ # yaml definitions for report reader flag objects
2
+ # PATIENT_INFO_LINE_FLAG = "Patient: "
3
+ # ENDOSCOPE_INFO_LINE_FLAG = "Gerät: "
4
+ # EXAMINER_INFO_LINE_FLAG = "1. Unters.:"
5
+ # CUT_OFF_BELOW_LINE_FLAG = "________________"
6
+
7
+ - model: endoreg_db.report_reader_flag
8
+ fields:
9
+ name: "ukw-examination-generic-patient-info-line"
10
+ value: "Patient: "
11
+
12
+ - model: endoreg_db.report_reader_flag
13
+ fields:
14
+ name: "ukw-examination-generic-endoscope-info-line"
15
+ value: "Gerät: "
16
+
17
+ - model: endoreg_db.report_reader_flag
18
+ fields:
19
+ name: "ukw-examination-generic-examiner-info-line"
20
+ value: "1. Unters.:"
21
+
22
+ - model: endoreg_db.report_reader_flag
23
+ fields:
24
+ name: "ukw-examination-generic-cut-off-below-line-01"
25
+ value: "________________"
26
+
endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml CHANGED
@@ -1,19 +1,19 @@
1
- - model: endoreg_db.report_reader_flag
2
- fields:
3
- name: "ukw-histology-generic-patient-info-line"
4
- value: "Patient:"
5
-
6
- - model: endoreg_db.report_reader_flag
7
- fields:
8
- name: "ukw-histology-generic-examiner-info-line"
9
- value: "Eingang am:"
10
-
11
- - model: endoreg_db.report_reader_flag
12
- fields:
13
- name: "ukw-histology-generic-cut-off-below-line-01"
14
- value: "$$-3"
15
-
16
- - model: endoreg_db.report_reader_flag
17
- fields:
18
- name: "ukw-histology-generic-endoscope-info-line"
19
- value: ""
1
+ - model: endoreg_db.report_reader_flag
2
+ fields:
3
+ name: "ukw-histology-generic-patient-info-line"
4
+ value: "Patient:"
5
+
6
+ - model: endoreg_db.report_reader_flag
7
+ fields:
8
+ name: "ukw-histology-generic-examiner-info-line"
9
+ value: "Eingang am:"
10
+
11
+ - model: endoreg_db.report_reader_flag
12
+ fields:
13
+ name: "ukw-histology-generic-cut-off-below-line-01"
14
+ value: "$$-3"
15
+
16
+ - model: endoreg_db.report_reader_flag
17
+ fields:
18
+ name: "ukw-histology-generic-endoscope-info-line"
19
+ value: ""
endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml CHANGED
@@ -1,15 +1,15 @@
1
- - fields:
2
- name: gas
3
- name_de: Erdgas
4
- name_en: Gas
5
- model: endoreg_db.Resource
6
- - fields:
7
- name: oil
8
- name_de: "Heizöl"
9
- name_en: Oil
10
- model: endoreg_db.Resource
11
- - fields:
12
- name: electricity
13
- name_de: Strom
14
- name_en: Electricity
15
- model: endoreg_db.Resource
1
+ - fields:
2
+ name: gas
3
+ name_de: Erdgas
4
+ name_en: Gas
5
+ model: endoreg_db.Resource
6
+ - fields:
7
+ name: oil
8
+ name_de: "Heizöl"
9
+ name_en: Oil
10
+ model: endoreg_db.Resource
11
+ - fields:
12
+ name: electricity
13
+ name_de: Strom
14
+ name_en: Electricity
15
+ model: endoreg_db.Resource
endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml CHANGED
@@ -1,12 +1,12 @@
1
- - fields:
2
- distance: 1000
3
- emission_factor: transport_product_emission_generic_europe
4
- name: generic_europe
5
- unit: kilometer
6
- model: endoreg_db.TransportRoute
7
- - fields:
8
- distance: 10000
9
- emission_factor: transport_product_emission_generic_overseas
10
- name: generic_overseas
11
- unit: kilometer
12
- model: endoreg_db.TransportRoute
1
+ - fields:
2
+ distance: 1000
3
+ emission_factor: transport_product_emission_generic_europe
4
+ name: generic_europe
5
+ unit: kilometer
6
+ model: endoreg_db.TransportRoute
7
+ - fields:
8
+ distance: 10000
9
+ emission_factor: transport_product_emission_generic_overseas
10
+ name: generic_overseas
11
+ unit: kilometer
12
+ model: endoreg_db.TransportRoute