brainstate 0.1.7__py2.py3-none-any.whl → 0.1.9__py2.py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (133) hide show
  1. brainstate/__init__.py +58 -51
  2. brainstate/_compatible_import.py +148 -148
  3. brainstate/_state.py +1605 -1663
  4. brainstate/_state_test.py +52 -52
  5. brainstate/_utils.py +47 -47
  6. brainstate/augment/__init__.py +30 -30
  7. brainstate/augment/_autograd.py +778 -778
  8. brainstate/augment/_autograd_test.py +1289 -1289
  9. brainstate/augment/_eval_shape.py +99 -99
  10. brainstate/augment/_eval_shape_test.py +38 -38
  11. brainstate/augment/_mapping.py +1060 -1060
  12. brainstate/augment/_mapping_test.py +597 -597
  13. brainstate/augment/_random.py +151 -151
  14. brainstate/compile/__init__.py +38 -38
  15. brainstate/compile/_ad_checkpoint.py +204 -204
  16. brainstate/compile/_ad_checkpoint_test.py +49 -49
  17. brainstate/compile/_conditions.py +256 -256
  18. brainstate/compile/_conditions_test.py +220 -220
  19. brainstate/compile/_error_if.py +92 -92
  20. brainstate/compile/_error_if_test.py +52 -52
  21. brainstate/compile/_jit.py +346 -346
  22. brainstate/compile/_jit_test.py +143 -143
  23. brainstate/compile/_loop_collect_return.py +536 -536
  24. brainstate/compile/_loop_collect_return_test.py +58 -58
  25. brainstate/compile/_loop_no_collection.py +184 -184
  26. brainstate/compile/_loop_no_collection_test.py +50 -50
  27. brainstate/compile/_make_jaxpr.py +888 -888
  28. brainstate/compile/_make_jaxpr_test.py +156 -146
  29. brainstate/compile/_progress_bar.py +202 -202
  30. brainstate/compile/_unvmap.py +159 -159
  31. brainstate/compile/_util.py +147 -147
  32. brainstate/environ.py +563 -563
  33. brainstate/environ_test.py +62 -62
  34. brainstate/functional/__init__.py +27 -26
  35. brainstate/graph/__init__.py +29 -29
  36. brainstate/graph/_graph_node.py +244 -244
  37. brainstate/graph/_graph_node_test.py +73 -73
  38. brainstate/graph/_graph_operation.py +1738 -1738
  39. brainstate/graph/_graph_operation_test.py +563 -563
  40. brainstate/init/__init__.py +26 -26
  41. brainstate/init/_base.py +52 -52
  42. brainstate/init/_generic.py +244 -244
  43. brainstate/init/_random_inits.py +553 -553
  44. brainstate/init/_random_inits_test.py +149 -149
  45. brainstate/init/_regular_inits.py +105 -105
  46. brainstate/init/_regular_inits_test.py +50 -50
  47. brainstate/mixin.py +365 -363
  48. brainstate/mixin_test.py +77 -73
  49. brainstate/nn/__init__.py +135 -131
  50. brainstate/{functional → nn}/_activations.py +808 -813
  51. brainstate/{functional → nn}/_activations_test.py +331 -331
  52. brainstate/nn/_collective_ops.py +514 -514
  53. brainstate/nn/_collective_ops_test.py +43 -43
  54. brainstate/nn/_common.py +178 -178
  55. brainstate/nn/_conv.py +501 -501
  56. brainstate/nn/_conv_test.py +238 -238
  57. brainstate/nn/_delay.py +509 -470
  58. brainstate/nn/_delay_test.py +238 -0
  59. brainstate/nn/_dropout.py +426 -426
  60. brainstate/nn/_dropout_test.py +100 -100
  61. brainstate/nn/_dynamics.py +1343 -1361
  62. brainstate/nn/_dynamics_test.py +78 -78
  63. brainstate/nn/_elementwise.py +1119 -1120
  64. brainstate/nn/_elementwise_test.py +169 -169
  65. brainstate/nn/_embedding.py +58 -58
  66. brainstate/nn/_exp_euler.py +92 -92
  67. brainstate/nn/_exp_euler_test.py +35 -35
  68. brainstate/nn/_fixedprob.py +239 -239
  69. brainstate/nn/_fixedprob_test.py +114 -114
  70. brainstate/nn/_inputs.py +608 -608
  71. brainstate/nn/_linear.py +424 -424
  72. brainstate/nn/_linear_mv.py +83 -83
  73. brainstate/nn/_linear_mv_test.py +120 -120
  74. brainstate/nn/_linear_test.py +107 -107
  75. brainstate/nn/_ltp.py +28 -28
  76. brainstate/nn/_module.py +377 -377
  77. brainstate/nn/_module_test.py +40 -208
  78. brainstate/nn/_neuron.py +705 -705
  79. brainstate/nn/_neuron_test.py +161 -161
  80. brainstate/nn/_normalizations.py +975 -918
  81. brainstate/nn/_normalizations_test.py +73 -73
  82. brainstate/{functional → nn}/_others.py +46 -46
  83. brainstate/nn/_poolings.py +1177 -1177
  84. brainstate/nn/_poolings_test.py +217 -217
  85. brainstate/nn/_projection.py +486 -486
  86. brainstate/nn/_rate_rnns.py +554 -554
  87. brainstate/nn/_rate_rnns_test.py +63 -63
  88. brainstate/nn/_readout.py +209 -209
  89. brainstate/nn/_readout_test.py +53 -53
  90. brainstate/nn/_stp.py +236 -236
  91. brainstate/nn/_synapse.py +505 -505
  92. brainstate/nn/_synapse_test.py +131 -131
  93. brainstate/nn/_synaptic_projection.py +423 -423
  94. brainstate/nn/_synouts.py +162 -162
  95. brainstate/nn/_synouts_test.py +57 -57
  96. brainstate/nn/_utils.py +89 -89
  97. brainstate/nn/metrics.py +388 -388
  98. brainstate/optim/__init__.py +38 -38
  99. brainstate/optim/_base.py +64 -64
  100. brainstate/optim/_lr_scheduler.py +448 -448
  101. brainstate/optim/_lr_scheduler_test.py +50 -50
  102. brainstate/optim/_optax_optimizer.py +152 -152
  103. brainstate/optim/_optax_optimizer_test.py +53 -53
  104. brainstate/optim/_sgd_optimizer.py +1104 -1104
  105. brainstate/random/__init__.py +24 -24
  106. brainstate/random/_rand_funs.py +3616 -3616
  107. brainstate/random/_rand_funs_test.py +567 -567
  108. brainstate/random/_rand_seed.py +210 -210
  109. brainstate/random/_rand_seed_test.py +48 -48
  110. brainstate/random/_rand_state.py +1409 -1409
  111. brainstate/random/_random_for_unit.py +52 -52
  112. brainstate/surrogate.py +1957 -1957
  113. brainstate/transform.py +23 -23
  114. brainstate/typing.py +304 -304
  115. brainstate/util/__init__.py +50 -50
  116. brainstate/util/caller.py +98 -98
  117. brainstate/util/error.py +55 -55
  118. brainstate/util/filter.py +469 -469
  119. brainstate/util/others.py +540 -540
  120. brainstate/util/pretty_pytree.py +945 -945
  121. brainstate/util/pretty_pytree_test.py +159 -159
  122. brainstate/util/pretty_repr.py +328 -328
  123. brainstate/util/pretty_table.py +2954 -2954
  124. brainstate/util/scaling.py +258 -258
  125. brainstate/util/struct.py +523 -523
  126. {brainstate-0.1.7.dist-info → brainstate-0.1.9.dist-info}/METADATA +91 -99
  127. brainstate-0.1.9.dist-info/RECORD +130 -0
  128. {brainstate-0.1.7.dist-info → brainstate-0.1.9.dist-info}/WHEEL +1 -1
  129. {brainstate-0.1.7.dist-info → brainstate-0.1.9.dist-info/licenses}/LICENSE +202 -202
  130. brainstate/functional/_normalization.py +0 -81
  131. brainstate/functional/_spikes.py +0 -204
  132. brainstate-0.1.7.dist-info/RECORD +0 -131
  133. {brainstate-0.1.7.dist-info → brainstate-0.1.9.dist-info}/top_level.txt +0 -0
@@ -1,43 +1,43 @@
1
- # Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
2
- #
3
- # Licensed under the Apache License, Version 2.0 (the "License");
4
- # you may not use this file except in compliance with the License.
5
- # You may obtain a copy of the License at
6
- #
7
- # http://www.apache.org/licenses/LICENSE-2.0
8
- #
9
- # Unless required by applicable law or agreed to in writing, software
10
- # distributed under the License is distributed on an "AS IS" BASIS,
11
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
- # See the License for the specific language governing permissions and
13
- # limitations under the License.
14
- # ==============================================================================
15
-
16
- # -*- coding: utf-8 -*-
17
-
18
-
19
- import brainstate
20
-
21
-
22
- class Test_vmap_init_all_states:
23
-
24
- def test_vmap_init_all_states(self):
25
- gru = brainstate.nn.GRUCell(1, 2)
26
- brainstate.nn.vmap_init_all_states(gru, axis_size=10)
27
- print(gru)
28
-
29
- def test_vmap_init_all_states_v2(self):
30
- @brainstate.compile.jit
31
- def init():
32
- gru = brainstate.nn.GRUCell(1, 2)
33
- brainstate.nn.vmap_init_all_states(gru, axis_size=10)
34
- print(gru)
35
-
36
- init()
37
-
38
-
39
- class Test_init_all_states:
40
- def test_init_all_states(self):
41
- gru = brainstate.nn.GRUCell(1, 2)
42
- brainstate.nn.init_all_states(gru, batch_size=10)
43
- print(gru)
1
+ # Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+ # ==============================================================================
15
+
16
+ # -*- coding: utf-8 -*-
17
+
18
+
19
+ import brainstate
20
+
21
+
22
+ class Test_vmap_init_all_states:
23
+
24
+ def test_vmap_init_all_states(self):
25
+ gru = brainstate.nn.GRUCell(1, 2)
26
+ brainstate.nn.vmap_init_all_states(gru, axis_size=10)
27
+ print(gru)
28
+
29
+ def test_vmap_init_all_states_v2(self):
30
+ @brainstate.compile.jit
31
+ def init():
32
+ gru = brainstate.nn.GRUCell(1, 2)
33
+ brainstate.nn.vmap_init_all_states(gru, axis_size=10)
34
+ print(gru)
35
+
36
+ init()
37
+
38
+
39
+ class Test_init_all_states:
40
+ def test_init_all_states(self):
41
+ gru = brainstate.nn.GRUCell(1, 2)
42
+ brainstate.nn.init_all_states(gru, batch_size=10)
43
+ print(gru)
brainstate/nn/_common.py CHANGED
@@ -1,178 +1,178 @@
1
- # Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
2
- #
3
- # Licensed under the Apache License, Version 2.0 (the "License");
4
- # you may not use this file except in compliance with the License.
5
- # You may obtain a copy of the License at
6
- #
7
- # http://www.apache.org/licenses/LICENSE-2.0
8
- #
9
- # Unless required by applicable law or agreed to in writing, software
10
- # distributed under the License is distributed on an "AS IS" BASIS,
11
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
- # See the License for the specific language governing permissions and
13
- # limitations under the License.
14
- # ==============================================================================
15
-
16
- # -*- coding: utf-8 -*-
17
-
18
- from collections import defaultdict
19
- from typing import Any, Sequence, Hashable, Dict
20
-
21
- from brainstate import environ
22
- from brainstate.augment._mapping import vmap
23
- from brainstate.typing import Filter
24
- from ._module import Module
25
-
26
- AxisName = Hashable
27
-
28
- __all__ = [
29
- 'EnvironContext',
30
- 'Vmap',
31
- ]
32
-
33
-
34
- class EnvironContext(Module):
35
- """
36
- A wrapper class that provides an environment context for a given layer.
37
-
38
- This class allows execution of a layer within a specific environment context,
39
- which can be useful for controlling the execution environment of neural network layers.
40
-
41
- This class is equivalent to the following code snippet:
42
-
43
- ```python
44
-
45
- import brainstate
46
-
47
- with brainstate.environ.context(**context):
48
- result = layer(*args, **kwargs)
49
-
50
- ```
51
-
52
- Attributes:
53
- layer (Module): The layer to be executed within the environment context.
54
- context (dict): The environment context parameters.
55
- """
56
-
57
- def __init__(self, layer: Module, **context):
58
- """
59
- Initialize the EnvironContext.
60
-
61
- Args:
62
- layer (Module): The layer to be wrapped with the environment context.
63
- **context: Arbitrary keyword arguments representing the environment context parameters.
64
- """
65
- super().__init__()
66
-
67
- assert isinstance(layer, Module), 'The layer must be an instance of Module.'
68
- self.layer = layer
69
- self.context = context
70
-
71
- def update(self, *args, **kwargs):
72
- """
73
- Execute the wrapped layer within the specified environment context.
74
-
75
- Args:
76
- *args: Variable length argument list to be passed to the wrapped layer.
77
- **kwargs: Arbitrary keyword arguments to be passed to the wrapped layer.
78
-
79
- Returns:
80
- The result of executing the wrapped layer within the environment context.
81
- """
82
- with environ.context(**self.context):
83
- return self.layer(*args, **kwargs)
84
-
85
- def add_context(self, **context):
86
- """
87
- Add additional environment context parameters to the existing context.
88
-
89
- Args:
90
- **context: Arbitrary keyword arguments representing the additional environment context parameters.
91
- """
92
- self.context.update(context)
93
-
94
-
95
- def _filter_states(
96
- module: Module,
97
- filters: Filter | Dict[Filter, int],
98
- ) -> Dict:
99
- if filters is None:
100
- filtered_states = None
101
- elif isinstance(filters, dict):
102
- in_states_filter = defaultdict(list)
103
- for filter_, axis in filters:
104
- assert isinstance(axis, int), 'The value of in_states must be the map axis, which should be an integer.'
105
- in_states_filter[axis].append(filter_)
106
- filtered_states = module.states(*in_states_filter.values())
107
- in_states_axis = tuple(in_states_filter.keys())
108
- filtered_states = {axis: states for axis, states in zip(in_states_axis, filtered_states)}
109
- else:
110
- filtered_states = module.states(filters)
111
- return filtered_states
112
-
113
-
114
- class Vmap(Module):
115
- """
116
- A class that applies vectorized mapping (vmap) to a given module.
117
-
118
- This class wraps a module and applies vectorized mapping to its execution,
119
- allowing for efficient parallel processing across specified axes.
120
-
121
- Args:
122
- module (Module): The module to be vmapped.
123
- in_axes (int | None | Sequence[Any], optional): Specifies how to map over inputs. Defaults to 0.
124
- out_axes (Any, optional): Specifies how to map over outputs. Defaults to 0.
125
- vmap_states (Filter | Dict[Filter, int], optional): Specifies which states to vmap and on which axes. Defaults to None.
126
- vmap_out_states (Filter | Dict[Filter, int], optional): Specifies which output states to vmap and on which axes. Defaults to None.
127
- axis_name (AxisName | None, optional): Name of the axis being mapped over. Defaults to None.
128
- axis_size (int | None, optional): Size of the axis being mapped over. Defaults to None.
129
- """
130
-
131
- def __init__(
132
- self,
133
- module: Module,
134
- in_axes: int | None | Sequence[Any] = 0,
135
- out_axes: Any = 0,
136
- vmap_states: Filter | Dict[Filter, int] = None,
137
- vmap_out_states: Filter | Dict[Filter, int] = None,
138
- axis_name: AxisName | None = None,
139
- axis_size: int | None = None,
140
- ):
141
- super().__init__()
142
-
143
- # parameters
144
- self.in_axes = in_axes
145
- self.out_axes = out_axes
146
- self.axis_name = axis_name
147
- self.axis_size = axis_size
148
- assert isinstance(module, Module), 'The module must be an instance of Module.'
149
- self.module = module
150
- vmap_states = _filter_states(module, vmap_states)
151
- vmap_out_states = _filter_states(module, vmap_out_states)
152
-
153
- @vmap(
154
- in_axes=in_axes,
155
- out_axes=out_axes,
156
- in_states=vmap_states,
157
- out_states=vmap_out_states,
158
- axis_name=axis_name,
159
- axis_size=axis_size,
160
- )
161
- def vmap_run(*args, **kwargs):
162
- return module(*args, **kwargs)
163
-
164
- # vmapped module
165
- self.vmapped_fn = vmap_run
166
-
167
- def update(self, *args, **kwargs):
168
- """
169
- Execute the vmapped module with the given arguments.
170
-
171
- Args:
172
- *args: Variable length argument list to be passed to the vmapped module.
173
- **kwargs: Arbitrary keyword arguments to be passed to the vmapped module.
174
-
175
- Returns:
176
- The result of executing the vmapped module.
177
- """
178
- return self.vmapped_fn(*args, **kwargs)
1
+ # Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+ # ==============================================================================
15
+
16
+ # -*- coding: utf-8 -*-
17
+
18
+ from collections import defaultdict
19
+ from typing import Any, Sequence, Hashable, Dict
20
+
21
+ from brainstate import environ
22
+ from brainstate.augment._mapping import vmap
23
+ from brainstate.typing import Filter
24
+ from ._module import Module
25
+
26
+ AxisName = Hashable
27
+
28
+ __all__ = [
29
+ 'EnvironContext',
30
+ 'Vmap',
31
+ ]
32
+
33
+
34
+ class EnvironContext(Module):
35
+ """
36
+ A wrapper class that provides an environment context for a given layer.
37
+
38
+ This class allows execution of a layer within a specific environment context,
39
+ which can be useful for controlling the execution environment of neural network layers.
40
+
41
+ This class is equivalent to the following code snippet:
42
+
43
+ ```python
44
+
45
+ import brainstate
46
+
47
+ with brainstate.environ.context(**context):
48
+ result = layer(*args, **kwargs)
49
+
50
+ ```
51
+
52
+ Attributes:
53
+ layer (Module): The layer to be executed within the environment context.
54
+ context (dict): The environment context parameters.
55
+ """
56
+
57
+ def __init__(self, layer: Module, **context):
58
+ """
59
+ Initialize the EnvironContext.
60
+
61
+ Args:
62
+ layer (Module): The layer to be wrapped with the environment context.
63
+ **context: Arbitrary keyword arguments representing the environment context parameters.
64
+ """
65
+ super().__init__()
66
+
67
+ assert isinstance(layer, Module), 'The layer must be an instance of Module.'
68
+ self.layer = layer
69
+ self.context = context
70
+
71
+ def update(self, *args, **kwargs):
72
+ """
73
+ Execute the wrapped layer within the specified environment context.
74
+
75
+ Args:
76
+ *args: Variable length argument list to be passed to the wrapped layer.
77
+ **kwargs: Arbitrary keyword arguments to be passed to the wrapped layer.
78
+
79
+ Returns:
80
+ The result of executing the wrapped layer within the environment context.
81
+ """
82
+ with environ.context(**self.context):
83
+ return self.layer(*args, **kwargs)
84
+
85
+ def add_context(self, **context):
86
+ """
87
+ Add additional environment context parameters to the existing context.
88
+
89
+ Args:
90
+ **context: Arbitrary keyword arguments representing the additional environment context parameters.
91
+ """
92
+ self.context.update(context)
93
+
94
+
95
+ def _filter_states(
96
+ module: Module,
97
+ filters: Filter | Dict[Filter, int],
98
+ ) -> Dict:
99
+ if filters is None:
100
+ filtered_states = None
101
+ elif isinstance(filters, dict):
102
+ in_states_filter = defaultdict(list)
103
+ for filter_, axis in filters:
104
+ assert isinstance(axis, int), 'The value of in_states must be the map axis, which should be an integer.'
105
+ in_states_filter[axis].append(filter_)
106
+ filtered_states = module.states(*in_states_filter.values())
107
+ in_states_axis = tuple(in_states_filter.keys())
108
+ filtered_states = {axis: states for axis, states in zip(in_states_axis, filtered_states)}
109
+ else:
110
+ filtered_states = module.states(filters)
111
+ return filtered_states
112
+
113
+
114
+ class Vmap(Module):
115
+ """
116
+ A class that applies vectorized mapping (vmap) to a given module.
117
+
118
+ This class wraps a module and applies vectorized mapping to its execution,
119
+ allowing for efficient parallel processing across specified axes.
120
+
121
+ Args:
122
+ module (Module): The module to be vmapped.
123
+ in_axes (int | None | Sequence[Any], optional): Specifies how to map over inputs. Defaults to 0.
124
+ out_axes (Any, optional): Specifies how to map over outputs. Defaults to 0.
125
+ vmap_states (Filter | Dict[Filter, int], optional): Specifies which states to vmap and on which axes. Defaults to None.
126
+ vmap_out_states (Filter | Dict[Filter, int], optional): Specifies which output states to vmap and on which axes. Defaults to None.
127
+ axis_name (AxisName | None, optional): Name of the axis being mapped over. Defaults to None.
128
+ axis_size (int | None, optional): Size of the axis being mapped over. Defaults to None.
129
+ """
130
+
131
+ def __init__(
132
+ self,
133
+ module: Module,
134
+ in_axes: int | None | Sequence[Any] = 0,
135
+ out_axes: Any = 0,
136
+ vmap_states: Filter | Dict[Filter, int] = None,
137
+ vmap_out_states: Filter | Dict[Filter, int] = None,
138
+ axis_name: AxisName | None = None,
139
+ axis_size: int | None = None,
140
+ ):
141
+ super().__init__()
142
+
143
+ # parameters
144
+ self.in_axes = in_axes
145
+ self.out_axes = out_axes
146
+ self.axis_name = axis_name
147
+ self.axis_size = axis_size
148
+ assert isinstance(module, Module), 'The module must be an instance of Module.'
149
+ self.module = module
150
+ vmap_states = _filter_states(module, vmap_states)
151
+ vmap_out_states = _filter_states(module, vmap_out_states)
152
+
153
+ @vmap(
154
+ in_axes=in_axes,
155
+ out_axes=out_axes,
156
+ in_states=vmap_states,
157
+ out_states=vmap_out_states,
158
+ axis_name=axis_name,
159
+ axis_size=axis_size,
160
+ )
161
+ def vmap_run(*args, **kwargs):
162
+ return module(*args, **kwargs)
163
+
164
+ # vmapped module
165
+ self.vmapped_fn = vmap_run
166
+
167
+ def update(self, *args, **kwargs):
168
+ """
169
+ Execute the vmapped module with the given arguments.
170
+
171
+ Args:
172
+ *args: Variable length argument list to be passed to the vmapped module.
173
+ **kwargs: Arbitrary keyword arguments to be passed to the vmapped module.
174
+
175
+ Returns:
176
+ The result of executing the vmapped module.
177
+ """
178
+ return self.vmapped_fn(*args, **kwargs)