okstra 0.108.0 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
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- package/runtime/python/okstra_vendor/networkx/generators/joint_degree_seq.py +664 -0
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- package/runtime/python/okstra_vendor/networkx/generators/tests/test_intersection.py +28 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +144 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_joint_degree_seq.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +72 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +195 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +15 -0
- package/runtime/python/okstra_vendor/networkx/generators/time_series.py +74 -0
- package/runtime/python/okstra_vendor/networkx/generators/trees.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/triads.py +94 -0
- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
- package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +512 -0
- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +879 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +427 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +1053 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +156 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +48 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +137 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +108 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +393 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +113 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +286 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +379 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +354 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +318 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +612 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +744 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +181 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +1531 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +30 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +63 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +128 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +166 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +1742 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/text.py +851 -0
- package/runtime/python/okstra_vendor/networkx/relabel.py +285 -0
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +248 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +321 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +531 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +281 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +40 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +11 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +96 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/__init__.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/backends.py +2171 -0
- package/runtime/python/okstra_vendor/networkx/utils/configs.py +396 -0
- package/runtime/python/okstra_vendor/networkx/utils/decorators.py +1233 -0
- package/runtime/python/okstra_vendor/networkx/utils/heaps.py +338 -0
- package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +297 -0
- package/runtime/python/okstra_vendor/networkx/utils/misc.py +703 -0
- package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +198 -0
- package/runtime/python/okstra_vendor/networkx/utils/rcm.py +159 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +11 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +225 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +263 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +510 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +131 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +268 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +393 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +53 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +63 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +55 -0
- package/runtime/python/okstra_vendor/networkx/utils/union_find.py +106 -0
- package/runtime/skills/okstra-graphify/SKILL.md +161 -0
- package/runtime/skills/okstra-inspect/SKILL.md +17 -9
- package/runtime/templates/reports/settings.template.json +4 -0
- package/src/cli-registry.mjs +7 -0
- package/src/commands/graphify.mjs +32 -0
- package/src/commands/lifecycle/doctor.mjs +9 -0
- package/src/lib/skill-catalog.mjs +1 -0
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"""Greedy coloring test suite."""
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import itertools
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import pytest
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import networkx as nx
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is_coloring = nx.algorithms.coloring.equitable_coloring.is_coloring
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is_equitable = nx.algorithms.coloring.equitable_coloring.is_equitable
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ALL_STRATEGIES = [
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"largest_first",
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"random_sequential",
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"smallest_last",
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"independent_set",
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"connected_sequential_bfs",
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"connected_sequential_dfs",
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"connected_sequential",
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"saturation_largest_first",
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"DSATUR",
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]
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# List of strategies where interchange=True results in an error
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INTERCHANGE_INVALID = ["independent_set", "saturation_largest_first", "DSATUR"]
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class TestColoring:
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def test_basic_cases(self):
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def check_basic_case(graph_func, n_nodes, strategy, interchange):
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graph = graph_func()
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coloring = nx.coloring.greedy_color(
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graph, strategy=strategy, interchange=interchange
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)
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assert verify_length(coloring, n_nodes)
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assert verify_coloring(graph, coloring)
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for graph_func, n_nodes in BASIC_TEST_CASES.items():
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for interchange in [True, False]:
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for strategy in ALL_STRATEGIES:
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check_basic_case(graph_func, n_nodes, strategy, False)
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if strategy not in INTERCHANGE_INVALID:
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check_basic_case(graph_func, n_nodes, strategy, True)
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def test_special_cases(self):
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def check_special_case(strategy, graph_func, interchange, colors):
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graph = graph_func()
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coloring = nx.coloring.greedy_color(
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graph, strategy=strategy, interchange=interchange
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)
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if not hasattr(colors, "__len__"):
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colors = [colors]
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assert any(verify_length(coloring, n_colors) for n_colors in colors)
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assert verify_coloring(graph, coloring)
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for strategy, arglist in SPECIAL_TEST_CASES.items():
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for args in arglist:
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check_special_case(strategy, args[0], args[1], args[2])
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def test_interchange_invalid(self):
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graph = one_node_graph()
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for strategy in INTERCHANGE_INVALID:
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pytest.raises(
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nx.NetworkXPointlessConcept,
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nx.coloring.greedy_color,
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graph,
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strategy=strategy,
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interchange=True,
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)
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def test_bad_inputs(self):
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graph = one_node_graph()
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pytest.raises(
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nx.NetworkXError,
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nx.coloring.greedy_color,
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graph,
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strategy="invalid strategy",
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)
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def test_strategy_as_function(self):
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graph = lf_shc()
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colors_1 = nx.coloring.greedy_color(graph, "largest_first")
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colors_2 = nx.coloring.greedy_color(graph, nx.coloring.strategy_largest_first)
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assert colors_1 == colors_2
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def test_seed_argument(self):
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graph = lf_shc()
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rs = nx.coloring.strategy_random_sequential
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c1 = nx.coloring.greedy_color(graph, lambda g, c: rs(g, c, seed=1))
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for u, v in graph.edges:
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assert c1[u] != c1[v]
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def test_is_coloring(self):
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G = nx.Graph()
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G.add_edges_from([(0, 1), (1, 2)])
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coloring = {0: 0, 1: 1, 2: 0}
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assert is_coloring(G, coloring)
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coloring[0] = 1
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assert not is_coloring(G, coloring)
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assert not is_equitable(G, coloring)
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def test_is_equitable(self):
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G = nx.Graph()
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G.add_edges_from([(0, 1), (1, 2)])
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coloring = {0: 0, 1: 1, 2: 0}
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assert is_equitable(G, coloring)
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G.add_edges_from([(2, 3), (2, 4), (2, 5)])
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coloring[3] = 1
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coloring[4] = 1
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coloring[5] = 1
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assert is_coloring(G, coloring)
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assert not is_equitable(G, coloring)
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def test_num_colors(self):
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G = nx.Graph()
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G.add_edges_from([(0, 1), (0, 2), (0, 3)])
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pytest.raises(nx.NetworkXAlgorithmError, nx.coloring.equitable_color, G, 2)
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122
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def test_equitable_color(self):
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G = nx.fast_gnp_random_graph(n=10, p=0.2, seed=42)
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coloring = nx.coloring.equitable_color(G, max_degree(G) + 1)
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assert is_equitable(G, coloring)
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127
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def test_equitable_color_empty(self):
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G = nx.empty_graph()
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coloring = nx.coloring.equitable_color(G, max_degree(G) + 1)
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assert is_equitable(G, coloring)
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def test_equitable_color_large(self):
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G = nx.fast_gnp_random_graph(100, 0.1, seed=42)
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coloring = nx.coloring.equitable_color(G, max_degree(G) + 1)
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assert is_equitable(G, coloring, num_colors=max_degree(G) + 1)
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def test_case_V_plus_not_in_A_cal(self):
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# Hand crafted case to avoid the easy case.
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L = {
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0: [2, 5],
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1: [3, 4],
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2: [0, 8],
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3: [1, 7],
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4: [1, 6],
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5: [0, 6],
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6: [4, 5],
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7: [3],
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8: [2],
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}
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F = {
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# Color 0
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0: 0,
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1: 0,
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# Color 1
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156
|
+
2: 1,
|
|
157
|
+
3: 1,
|
|
158
|
+
4: 1,
|
|
159
|
+
5: 1,
|
|
160
|
+
# Color 2
|
|
161
|
+
6: 2,
|
|
162
|
+
7: 2,
|
|
163
|
+
8: 2,
|
|
164
|
+
}
|
|
165
|
+
|
|
166
|
+
C = nx.algorithms.coloring.equitable_coloring.make_C_from_F(F)
|
|
167
|
+
N = nx.algorithms.coloring.equitable_coloring.make_N_from_L_C(L, C)
|
|
168
|
+
H = nx.algorithms.coloring.equitable_coloring.make_H_from_C_N(C, N)
|
|
169
|
+
|
|
170
|
+
nx.algorithms.coloring.equitable_coloring.procedure_P(
|
|
171
|
+
V_minus=0, V_plus=1, N=N, H=H, F=F, C=C, L=L
|
|
172
|
+
)
|
|
173
|
+
check_state(L=L, N=N, H=H, F=F, C=C)
|
|
174
|
+
|
|
175
|
+
def test_cast_no_solo(self):
|
|
176
|
+
L = {
|
|
177
|
+
0: [8, 9],
|
|
178
|
+
1: [10, 11],
|
|
179
|
+
2: [8],
|
|
180
|
+
3: [9],
|
|
181
|
+
4: [10, 11],
|
|
182
|
+
5: [8],
|
|
183
|
+
6: [9],
|
|
184
|
+
7: [10, 11],
|
|
185
|
+
8: [0, 2, 5],
|
|
186
|
+
9: [0, 3, 6],
|
|
187
|
+
10: [1, 4, 7],
|
|
188
|
+
11: [1, 4, 7],
|
|
189
|
+
}
|
|
190
|
+
|
|
191
|
+
F = {0: 0, 1: 0, 2: 2, 3: 2, 4: 2, 5: 3, 6: 3, 7: 3, 8: 1, 9: 1, 10: 1, 11: 1}
|
|
192
|
+
|
|
193
|
+
C = nx.algorithms.coloring.equitable_coloring.make_C_from_F(F)
|
|
194
|
+
N = nx.algorithms.coloring.equitable_coloring.make_N_from_L_C(L, C)
|
|
195
|
+
H = nx.algorithms.coloring.equitable_coloring.make_H_from_C_N(C, N)
|
|
196
|
+
|
|
197
|
+
nx.algorithms.coloring.equitable_coloring.procedure_P(
|
|
198
|
+
V_minus=0, V_plus=1, N=N, H=H, F=F, C=C, L=L
|
|
199
|
+
)
|
|
200
|
+
check_state(L=L, N=N, H=H, F=F, C=C)
|
|
201
|
+
|
|
202
|
+
def test_hard_prob(self):
|
|
203
|
+
# Tests for two levels of recursion.
|
|
204
|
+
num_colors, s = 5, 5
|
|
205
|
+
|
|
206
|
+
G = nx.Graph()
|
|
207
|
+
G.add_edges_from(
|
|
208
|
+
[
|
|
209
|
+
(0, 10),
|
|
210
|
+
(0, 11),
|
|
211
|
+
(0, 12),
|
|
212
|
+
(0, 23),
|
|
213
|
+
(10, 4),
|
|
214
|
+
(10, 9),
|
|
215
|
+
(10, 20),
|
|
216
|
+
(11, 4),
|
|
217
|
+
(11, 8),
|
|
218
|
+
(11, 16),
|
|
219
|
+
(12, 9),
|
|
220
|
+
(12, 22),
|
|
221
|
+
(12, 23),
|
|
222
|
+
(23, 7),
|
|
223
|
+
(1, 17),
|
|
224
|
+
(1, 18),
|
|
225
|
+
(1, 19),
|
|
226
|
+
(1, 24),
|
|
227
|
+
(17, 5),
|
|
228
|
+
(17, 13),
|
|
229
|
+
(17, 22),
|
|
230
|
+
(18, 5),
|
|
231
|
+
(19, 5),
|
|
232
|
+
(19, 6),
|
|
233
|
+
(19, 8),
|
|
234
|
+
(24, 7),
|
|
235
|
+
(24, 16),
|
|
236
|
+
(2, 4),
|
|
237
|
+
(2, 13),
|
|
238
|
+
(2, 14),
|
|
239
|
+
(2, 15),
|
|
240
|
+
(4, 6),
|
|
241
|
+
(13, 5),
|
|
242
|
+
(13, 21),
|
|
243
|
+
(14, 6),
|
|
244
|
+
(14, 15),
|
|
245
|
+
(15, 6),
|
|
246
|
+
(15, 21),
|
|
247
|
+
(3, 16),
|
|
248
|
+
(3, 20),
|
|
249
|
+
(3, 21),
|
|
250
|
+
(3, 22),
|
|
251
|
+
(16, 8),
|
|
252
|
+
(20, 8),
|
|
253
|
+
(21, 9),
|
|
254
|
+
(22, 7),
|
|
255
|
+
]
|
|
256
|
+
)
|
|
257
|
+
F = {node: node // s for node in range(num_colors * s)}
|
|
258
|
+
F[s - 1] = num_colors - 1
|
|
259
|
+
|
|
260
|
+
params = make_params_from_graph(G=G, F=F)
|
|
261
|
+
|
|
262
|
+
nx.algorithms.coloring.equitable_coloring.procedure_P(
|
|
263
|
+
V_minus=0, V_plus=num_colors - 1, **params
|
|
264
|
+
)
|
|
265
|
+
check_state(**params)
|
|
266
|
+
|
|
267
|
+
def test_hardest_prob(self):
|
|
268
|
+
# Tests for two levels of recursion.
|
|
269
|
+
num_colors, s = 10, 4
|
|
270
|
+
|
|
271
|
+
G = nx.Graph()
|
|
272
|
+
G.add_edges_from(
|
|
273
|
+
[
|
|
274
|
+
(0, 19),
|
|
275
|
+
(0, 24),
|
|
276
|
+
(0, 29),
|
|
277
|
+
(0, 30),
|
|
278
|
+
(0, 35),
|
|
279
|
+
(19, 3),
|
|
280
|
+
(19, 7),
|
|
281
|
+
(19, 9),
|
|
282
|
+
(19, 15),
|
|
283
|
+
(19, 21),
|
|
284
|
+
(19, 24),
|
|
285
|
+
(19, 30),
|
|
286
|
+
(19, 38),
|
|
287
|
+
(24, 5),
|
|
288
|
+
(24, 11),
|
|
289
|
+
(24, 13),
|
|
290
|
+
(24, 20),
|
|
291
|
+
(24, 30),
|
|
292
|
+
(24, 37),
|
|
293
|
+
(24, 38),
|
|
294
|
+
(29, 6),
|
|
295
|
+
(29, 10),
|
|
296
|
+
(29, 13),
|
|
297
|
+
(29, 15),
|
|
298
|
+
(29, 16),
|
|
299
|
+
(29, 17),
|
|
300
|
+
(29, 20),
|
|
301
|
+
(29, 26),
|
|
302
|
+
(30, 6),
|
|
303
|
+
(30, 10),
|
|
304
|
+
(30, 15),
|
|
305
|
+
(30, 22),
|
|
306
|
+
(30, 23),
|
|
307
|
+
(30, 39),
|
|
308
|
+
(35, 6),
|
|
309
|
+
(35, 9),
|
|
310
|
+
(35, 14),
|
|
311
|
+
(35, 18),
|
|
312
|
+
(35, 22),
|
|
313
|
+
(35, 23),
|
|
314
|
+
(35, 25),
|
|
315
|
+
(35, 27),
|
|
316
|
+
(1, 20),
|
|
317
|
+
(1, 26),
|
|
318
|
+
(1, 31),
|
|
319
|
+
(1, 34),
|
|
320
|
+
(1, 38),
|
|
321
|
+
(20, 4),
|
|
322
|
+
(20, 8),
|
|
323
|
+
(20, 14),
|
|
324
|
+
(20, 18),
|
|
325
|
+
(20, 28),
|
|
326
|
+
(20, 33),
|
|
327
|
+
(26, 7),
|
|
328
|
+
(26, 10),
|
|
329
|
+
(26, 14),
|
|
330
|
+
(26, 18),
|
|
331
|
+
(26, 21),
|
|
332
|
+
(26, 32),
|
|
333
|
+
(26, 39),
|
|
334
|
+
(31, 5),
|
|
335
|
+
(31, 8),
|
|
336
|
+
(31, 13),
|
|
337
|
+
(31, 16),
|
|
338
|
+
(31, 17),
|
|
339
|
+
(31, 21),
|
|
340
|
+
(31, 25),
|
|
341
|
+
(31, 27),
|
|
342
|
+
(34, 7),
|
|
343
|
+
(34, 8),
|
|
344
|
+
(34, 13),
|
|
345
|
+
(34, 18),
|
|
346
|
+
(34, 22),
|
|
347
|
+
(34, 23),
|
|
348
|
+
(34, 25),
|
|
349
|
+
(34, 27),
|
|
350
|
+
(38, 4),
|
|
351
|
+
(38, 9),
|
|
352
|
+
(38, 12),
|
|
353
|
+
(38, 14),
|
|
354
|
+
(38, 21),
|
|
355
|
+
(38, 27),
|
|
356
|
+
(2, 3),
|
|
357
|
+
(2, 18),
|
|
358
|
+
(2, 21),
|
|
359
|
+
(2, 28),
|
|
360
|
+
(2, 32),
|
|
361
|
+
(2, 33),
|
|
362
|
+
(2, 36),
|
|
363
|
+
(2, 37),
|
|
364
|
+
(2, 39),
|
|
365
|
+
(3, 5),
|
|
366
|
+
(3, 9),
|
|
367
|
+
(3, 13),
|
|
368
|
+
(3, 22),
|
|
369
|
+
(3, 23),
|
|
370
|
+
(3, 25),
|
|
371
|
+
(3, 27),
|
|
372
|
+
(18, 6),
|
|
373
|
+
(18, 11),
|
|
374
|
+
(18, 15),
|
|
375
|
+
(18, 39),
|
|
376
|
+
(21, 4),
|
|
377
|
+
(21, 10),
|
|
378
|
+
(21, 14),
|
|
379
|
+
(21, 36),
|
|
380
|
+
(28, 6),
|
|
381
|
+
(28, 10),
|
|
382
|
+
(28, 14),
|
|
383
|
+
(28, 16),
|
|
384
|
+
(28, 17),
|
|
385
|
+
(28, 25),
|
|
386
|
+
(28, 27),
|
|
387
|
+
(32, 5),
|
|
388
|
+
(32, 10),
|
|
389
|
+
(32, 12),
|
|
390
|
+
(32, 16),
|
|
391
|
+
(32, 17),
|
|
392
|
+
(32, 22),
|
|
393
|
+
(32, 23),
|
|
394
|
+
(33, 7),
|
|
395
|
+
(33, 10),
|
|
396
|
+
(33, 12),
|
|
397
|
+
(33, 16),
|
|
398
|
+
(33, 17),
|
|
399
|
+
(33, 25),
|
|
400
|
+
(33, 27),
|
|
401
|
+
(36, 5),
|
|
402
|
+
(36, 8),
|
|
403
|
+
(36, 15),
|
|
404
|
+
(36, 16),
|
|
405
|
+
(36, 17),
|
|
406
|
+
(36, 25),
|
|
407
|
+
(36, 27),
|
|
408
|
+
(37, 5),
|
|
409
|
+
(37, 11),
|
|
410
|
+
(37, 15),
|
|
411
|
+
(37, 16),
|
|
412
|
+
(37, 17),
|
|
413
|
+
(37, 22),
|
|
414
|
+
(37, 23),
|
|
415
|
+
(39, 7),
|
|
416
|
+
(39, 8),
|
|
417
|
+
(39, 15),
|
|
418
|
+
(39, 22),
|
|
419
|
+
(39, 23),
|
|
420
|
+
]
|
|
421
|
+
)
|
|
422
|
+
F = {node: node // s for node in range(num_colors * s)}
|
|
423
|
+
F[s - 1] = num_colors - 1 # V- = 0, V+ = num_colors - 1
|
|
424
|
+
|
|
425
|
+
params = make_params_from_graph(G=G, F=F)
|
|
426
|
+
|
|
427
|
+
nx.algorithms.coloring.equitable_coloring.procedure_P(
|
|
428
|
+
V_minus=0, V_plus=num_colors - 1, **params
|
|
429
|
+
)
|
|
430
|
+
check_state(**params)
|
|
431
|
+
|
|
432
|
+
def test_strategy_saturation_largest_first(self):
|
|
433
|
+
def color_remaining_nodes(
|
|
434
|
+
G,
|
|
435
|
+
colored_nodes,
|
|
436
|
+
full_color_assignment=None,
|
|
437
|
+
nodes_to_add_between_calls=1,
|
|
438
|
+
):
|
|
439
|
+
color_assignments = []
|
|
440
|
+
aux_colored_nodes = colored_nodes.copy()
|
|
441
|
+
|
|
442
|
+
node_iterator = nx.algorithms.coloring.greedy_coloring.strategy_saturation_largest_first(
|
|
443
|
+
G, aux_colored_nodes
|
|
444
|
+
)
|
|
445
|
+
|
|
446
|
+
for u in node_iterator:
|
|
447
|
+
# Set to keep track of colors of neighbors
|
|
448
|
+
nbr_colors = {
|
|
449
|
+
aux_colored_nodes[v] for v in G[u] if v in aux_colored_nodes
|
|
450
|
+
}
|
|
451
|
+
# Find the first unused color.
|
|
452
|
+
for color in itertools.count():
|
|
453
|
+
if color not in nbr_colors:
|
|
454
|
+
break
|
|
455
|
+
aux_colored_nodes[u] = color
|
|
456
|
+
color_assignments.append((u, color))
|
|
457
|
+
|
|
458
|
+
# Color nodes between iterations
|
|
459
|
+
for i in range(nodes_to_add_between_calls - 1):
|
|
460
|
+
if not len(color_assignments) + len(colored_nodes) >= len(
|
|
461
|
+
full_color_assignment
|
|
462
|
+
):
|
|
463
|
+
full_color_assignment_node, color = full_color_assignment[
|
|
464
|
+
len(color_assignments) + len(colored_nodes)
|
|
465
|
+
]
|
|
466
|
+
|
|
467
|
+
# Assign the new color to the current node.
|
|
468
|
+
aux_colored_nodes[full_color_assignment_node] = color
|
|
469
|
+
color_assignments.append((full_color_assignment_node, color))
|
|
470
|
+
|
|
471
|
+
return color_assignments, aux_colored_nodes
|
|
472
|
+
|
|
473
|
+
for G, _, _ in SPECIAL_TEST_CASES["saturation_largest_first"]:
|
|
474
|
+
G = G()
|
|
475
|
+
|
|
476
|
+
# Check that function still works when nodes are colored between iterations
|
|
477
|
+
for nodes_to_add_between_calls in range(1, 5):
|
|
478
|
+
# Get a full color assignment, (including the order in which nodes were colored)
|
|
479
|
+
colored_nodes = {}
|
|
480
|
+
full_color_assignment, full_colored_nodes = color_remaining_nodes(
|
|
481
|
+
G, colored_nodes
|
|
482
|
+
)
|
|
483
|
+
|
|
484
|
+
# For each node in the color assignment, add it to colored_nodes and re-run the function
|
|
485
|
+
for ind, (node, color) in enumerate(full_color_assignment):
|
|
486
|
+
colored_nodes[node] = color
|
|
487
|
+
|
|
488
|
+
(
|
|
489
|
+
partial_color_assignment,
|
|
490
|
+
partial_colored_nodes,
|
|
491
|
+
) = color_remaining_nodes(
|
|
492
|
+
G,
|
|
493
|
+
colored_nodes,
|
|
494
|
+
full_color_assignment=full_color_assignment,
|
|
495
|
+
nodes_to_add_between_calls=nodes_to_add_between_calls,
|
|
496
|
+
)
|
|
497
|
+
|
|
498
|
+
# Check that the color assignment and order of remaining nodes are the same
|
|
499
|
+
assert full_color_assignment[ind + 1 :] == partial_color_assignment
|
|
500
|
+
assert full_colored_nodes == partial_colored_nodes
|
|
501
|
+
|
|
502
|
+
|
|
503
|
+
# ############################ Utility functions ############################
|
|
504
|
+
def verify_coloring(graph, coloring):
|
|
505
|
+
for node in graph.nodes():
|
|
506
|
+
if node not in coloring:
|
|
507
|
+
return False
|
|
508
|
+
|
|
509
|
+
color = coloring[node]
|
|
510
|
+
for neighbor in graph.neighbors(node):
|
|
511
|
+
if coloring[neighbor] == color:
|
|
512
|
+
return False
|
|
513
|
+
|
|
514
|
+
return True
|
|
515
|
+
|
|
516
|
+
|
|
517
|
+
def verify_length(coloring, expected):
|
|
518
|
+
coloring = dict_to_sets(coloring)
|
|
519
|
+
return len(coloring) == expected
|
|
520
|
+
|
|
521
|
+
|
|
522
|
+
def dict_to_sets(colors):
|
|
523
|
+
if len(colors) == 0:
|
|
524
|
+
return []
|
|
525
|
+
|
|
526
|
+
k = max(colors.values()) + 1
|
|
527
|
+
sets = [set() for _ in range(k)]
|
|
528
|
+
|
|
529
|
+
for node, color in colors.items():
|
|
530
|
+
sets[color].add(node)
|
|
531
|
+
|
|
532
|
+
return sets
|
|
533
|
+
|
|
534
|
+
|
|
535
|
+
# ############################ Graph Generation ############################
|
|
536
|
+
|
|
537
|
+
|
|
538
|
+
def empty_graph():
|
|
539
|
+
return nx.Graph()
|
|
540
|
+
|
|
541
|
+
|
|
542
|
+
def one_node_graph():
|
|
543
|
+
graph = nx.Graph()
|
|
544
|
+
graph.add_nodes_from([1])
|
|
545
|
+
return graph
|
|
546
|
+
|
|
547
|
+
|
|
548
|
+
def two_node_graph():
|
|
549
|
+
graph = nx.Graph()
|
|
550
|
+
graph.add_nodes_from([1, 2])
|
|
551
|
+
graph.add_edges_from([(1, 2)])
|
|
552
|
+
return graph
|
|
553
|
+
|
|
554
|
+
|
|
555
|
+
def three_node_clique():
|
|
556
|
+
graph = nx.Graph()
|
|
557
|
+
graph.add_nodes_from([1, 2, 3])
|
|
558
|
+
graph.add_edges_from([(1, 2), (1, 3), (2, 3)])
|
|
559
|
+
return graph
|
|
560
|
+
|
|
561
|
+
|
|
562
|
+
def disconnected():
|
|
563
|
+
graph = nx.Graph()
|
|
564
|
+
graph.add_edges_from([(1, 2), (2, 3), (4, 5), (5, 6)])
|
|
565
|
+
return graph
|
|
566
|
+
|
|
567
|
+
|
|
568
|
+
def rs_shc():
|
|
569
|
+
graph = nx.Graph()
|
|
570
|
+
graph.add_nodes_from([1, 2, 3, 4])
|
|
571
|
+
graph.add_edges_from([(1, 2), (2, 3), (3, 4)])
|
|
572
|
+
return graph
|
|
573
|
+
|
|
574
|
+
|
|
575
|
+
def slf_shc():
|
|
576
|
+
graph = nx.Graph()
|
|
577
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7])
|
|
578
|
+
graph.add_edges_from(
|
|
579
|
+
[(1, 2), (1, 5), (1, 6), (2, 3), (2, 7), (3, 4), (3, 7), (4, 5), (4, 6), (5, 6)]
|
|
580
|
+
)
|
|
581
|
+
return graph
|
|
582
|
+
|
|
583
|
+
|
|
584
|
+
def slf_hc():
|
|
585
|
+
graph = nx.Graph()
|
|
586
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7, 8])
|
|
587
|
+
graph.add_edges_from(
|
|
588
|
+
[
|
|
589
|
+
(1, 2),
|
|
590
|
+
(1, 3),
|
|
591
|
+
(1, 4),
|
|
592
|
+
(1, 5),
|
|
593
|
+
(2, 3),
|
|
594
|
+
(2, 4),
|
|
595
|
+
(2, 6),
|
|
596
|
+
(5, 7),
|
|
597
|
+
(5, 8),
|
|
598
|
+
(6, 7),
|
|
599
|
+
(6, 8),
|
|
600
|
+
(7, 8),
|
|
601
|
+
]
|
|
602
|
+
)
|
|
603
|
+
return graph
|
|
604
|
+
|
|
605
|
+
|
|
606
|
+
def lf_shc():
|
|
607
|
+
graph = nx.Graph()
|
|
608
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6])
|
|
609
|
+
graph.add_edges_from([(6, 1), (1, 4), (4, 3), (3, 2), (2, 5)])
|
|
610
|
+
return graph
|
|
611
|
+
|
|
612
|
+
|
|
613
|
+
def lf_hc():
|
|
614
|
+
graph = nx.Graph()
|
|
615
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7])
|
|
616
|
+
graph.add_edges_from(
|
|
617
|
+
[
|
|
618
|
+
(1, 7),
|
|
619
|
+
(1, 6),
|
|
620
|
+
(1, 3),
|
|
621
|
+
(1, 4),
|
|
622
|
+
(7, 2),
|
|
623
|
+
(2, 6),
|
|
624
|
+
(2, 3),
|
|
625
|
+
(2, 5),
|
|
626
|
+
(5, 3),
|
|
627
|
+
(5, 4),
|
|
628
|
+
(4, 3),
|
|
629
|
+
]
|
|
630
|
+
)
|
|
631
|
+
return graph
|
|
632
|
+
|
|
633
|
+
|
|
634
|
+
def sl_shc():
|
|
635
|
+
graph = nx.Graph()
|
|
636
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6])
|
|
637
|
+
graph.add_edges_from(
|
|
638
|
+
[(1, 2), (1, 3), (2, 3), (1, 4), (2, 5), (3, 6), (4, 5), (4, 6), (5, 6)]
|
|
639
|
+
)
|
|
640
|
+
return graph
|
|
641
|
+
|
|
642
|
+
|
|
643
|
+
def sl_hc():
|
|
644
|
+
graph = nx.Graph()
|
|
645
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7, 8])
|
|
646
|
+
graph.add_edges_from(
|
|
647
|
+
[
|
|
648
|
+
(1, 2),
|
|
649
|
+
(1, 3),
|
|
650
|
+
(1, 5),
|
|
651
|
+
(1, 7),
|
|
652
|
+
(2, 3),
|
|
653
|
+
(2, 4),
|
|
654
|
+
(2, 8),
|
|
655
|
+
(8, 4),
|
|
656
|
+
(8, 6),
|
|
657
|
+
(8, 7),
|
|
658
|
+
(7, 5),
|
|
659
|
+
(7, 6),
|
|
660
|
+
(3, 4),
|
|
661
|
+
(4, 6),
|
|
662
|
+
(6, 5),
|
|
663
|
+
(5, 3),
|
|
664
|
+
]
|
|
665
|
+
)
|
|
666
|
+
return graph
|
|
667
|
+
|
|
668
|
+
|
|
669
|
+
def gis_shc():
|
|
670
|
+
graph = nx.Graph()
|
|
671
|
+
graph.add_nodes_from([1, 2, 3, 4])
|
|
672
|
+
graph.add_edges_from([(1, 2), (2, 3), (3, 4)])
|
|
673
|
+
return graph
|
|
674
|
+
|
|
675
|
+
|
|
676
|
+
def gis_hc():
|
|
677
|
+
graph = nx.Graph()
|
|
678
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6])
|
|
679
|
+
graph.add_edges_from([(1, 5), (2, 5), (3, 6), (4, 6), (5, 6)])
|
|
680
|
+
return graph
|
|
681
|
+
|
|
682
|
+
|
|
683
|
+
def cs_shc():
|
|
684
|
+
graph = nx.Graph()
|
|
685
|
+
graph.add_nodes_from([1, 2, 3, 4, 5])
|
|
686
|
+
graph.add_edges_from([(1, 2), (1, 5), (2, 3), (2, 4), (2, 5), (3, 4), (4, 5)])
|
|
687
|
+
return graph
|
|
688
|
+
|
|
689
|
+
|
|
690
|
+
def rsi_shc():
|
|
691
|
+
graph = nx.Graph()
|
|
692
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6])
|
|
693
|
+
graph.add_edges_from(
|
|
694
|
+
[(1, 2), (1, 5), (1, 6), (2, 3), (3, 4), (4, 5), (4, 6), (5, 6)]
|
|
695
|
+
)
|
|
696
|
+
return graph
|
|
697
|
+
|
|
698
|
+
|
|
699
|
+
def lfi_shc():
|
|
700
|
+
graph = nx.Graph()
|
|
701
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7])
|
|
702
|
+
graph.add_edges_from(
|
|
703
|
+
[(1, 2), (1, 5), (1, 6), (2, 3), (2, 7), (3, 4), (3, 7), (4, 5), (4, 6), (5, 6)]
|
|
704
|
+
)
|
|
705
|
+
return graph
|
|
706
|
+
|
|
707
|
+
|
|
708
|
+
def lfi_hc():
|
|
709
|
+
graph = nx.Graph()
|
|
710
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7, 8, 9])
|
|
711
|
+
graph.add_edges_from(
|
|
712
|
+
[
|
|
713
|
+
(1, 2),
|
|
714
|
+
(1, 5),
|
|
715
|
+
(1, 6),
|
|
716
|
+
(1, 7),
|
|
717
|
+
(2, 3),
|
|
718
|
+
(2, 8),
|
|
719
|
+
(2, 9),
|
|
720
|
+
(3, 4),
|
|
721
|
+
(3, 8),
|
|
722
|
+
(3, 9),
|
|
723
|
+
(4, 5),
|
|
724
|
+
(4, 6),
|
|
725
|
+
(4, 7),
|
|
726
|
+
(5, 6),
|
|
727
|
+
]
|
|
728
|
+
)
|
|
729
|
+
return graph
|
|
730
|
+
|
|
731
|
+
|
|
732
|
+
def sli_shc():
|
|
733
|
+
graph = nx.Graph()
|
|
734
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7])
|
|
735
|
+
graph.add_edges_from(
|
|
736
|
+
[
|
|
737
|
+
(1, 2),
|
|
738
|
+
(1, 3),
|
|
739
|
+
(1, 5),
|
|
740
|
+
(1, 7),
|
|
741
|
+
(2, 3),
|
|
742
|
+
(2, 6),
|
|
743
|
+
(3, 4),
|
|
744
|
+
(4, 5),
|
|
745
|
+
(4, 6),
|
|
746
|
+
(5, 7),
|
|
747
|
+
(6, 7),
|
|
748
|
+
]
|
|
749
|
+
)
|
|
750
|
+
return graph
|
|
751
|
+
|
|
752
|
+
|
|
753
|
+
def sli_hc():
|
|
754
|
+
graph = nx.Graph()
|
|
755
|
+
graph.add_nodes_from([1, 2, 3, 4, 5, 6, 7, 8, 9])
|
|
756
|
+
graph.add_edges_from(
|
|
757
|
+
[
|
|
758
|
+
(1, 2),
|
|
759
|
+
(1, 3),
|
|
760
|
+
(1, 4),
|
|
761
|
+
(1, 5),
|
|
762
|
+
(2, 3),
|
|
763
|
+
(2, 7),
|
|
764
|
+
(2, 8),
|
|
765
|
+
(2, 9),
|
|
766
|
+
(3, 6),
|
|
767
|
+
(3, 7),
|
|
768
|
+
(3, 9),
|
|
769
|
+
(4, 5),
|
|
770
|
+
(4, 6),
|
|
771
|
+
(4, 8),
|
|
772
|
+
(4, 9),
|
|
773
|
+
(5, 6),
|
|
774
|
+
(5, 7),
|
|
775
|
+
(5, 8),
|
|
776
|
+
(6, 7),
|
|
777
|
+
(6, 9),
|
|
778
|
+
(7, 8),
|
|
779
|
+
(8, 9),
|
|
780
|
+
]
|
|
781
|
+
)
|
|
782
|
+
return graph
|
|
783
|
+
|
|
784
|
+
|
|
785
|
+
# --------------------------------------------------------------------------
|
|
786
|
+
# Basic tests for all strategies
|
|
787
|
+
# For each basic graph function, specify the number of expected colors.
|
|
788
|
+
BASIC_TEST_CASES = {
|
|
789
|
+
empty_graph: 0,
|
|
790
|
+
one_node_graph: 1,
|
|
791
|
+
two_node_graph: 2,
|
|
792
|
+
disconnected: 2,
|
|
793
|
+
three_node_clique: 3,
|
|
794
|
+
}
|
|
795
|
+
|
|
796
|
+
|
|
797
|
+
# --------------------------------------------------------------------------
|
|
798
|
+
# Special test cases. Each strategy has a list of tuples of the form
|
|
799
|
+
# (graph function, interchange, valid # of colors)
|
|
800
|
+
SPECIAL_TEST_CASES = {
|
|
801
|
+
"random_sequential": [
|
|
802
|
+
(rs_shc, False, (2, 3)),
|
|
803
|
+
(rs_shc, True, 2),
|
|
804
|
+
(rsi_shc, True, (3, 4)),
|
|
805
|
+
],
|
|
806
|
+
"saturation_largest_first": [(slf_shc, False, (3, 4)), (slf_hc, False, 4)],
|
|
807
|
+
"largest_first": [
|
|
808
|
+
(lf_shc, False, (2, 3)),
|
|
809
|
+
(lf_hc, False, 4),
|
|
810
|
+
(lf_shc, True, 2),
|
|
811
|
+
(lf_hc, True, 3),
|
|
812
|
+
(lfi_shc, True, (3, 4)),
|
|
813
|
+
(lfi_hc, True, 4),
|
|
814
|
+
],
|
|
815
|
+
"smallest_last": [
|
|
816
|
+
(sl_shc, False, (3, 4)),
|
|
817
|
+
(sl_hc, False, 5),
|
|
818
|
+
(sl_shc, True, 3),
|
|
819
|
+
(sl_hc, True, 4),
|
|
820
|
+
(sli_shc, True, (3, 4)),
|
|
821
|
+
(sli_hc, True, 5),
|
|
822
|
+
],
|
|
823
|
+
"independent_set": [(gis_shc, False, (2, 3)), (gis_hc, False, 3)],
|
|
824
|
+
"connected_sequential": [(cs_shc, False, (3, 4)), (cs_shc, True, 3)],
|
|
825
|
+
"connected_sequential_dfs": [(cs_shc, False, (3, 4))],
|
|
826
|
+
}
|
|
827
|
+
|
|
828
|
+
|
|
829
|
+
# --------------------------------------------------------------------------
|
|
830
|
+
# Helper functions to test
|
|
831
|
+
# (graph function, interchange, valid # of colors)
|
|
832
|
+
|
|
833
|
+
|
|
834
|
+
def check_state(L, N, H, F, C):
|
|
835
|
+
s = len(C[0])
|
|
836
|
+
num_colors = len(C.keys())
|
|
837
|
+
|
|
838
|
+
assert all(u in L[v] for u in L for v in L[u])
|
|
839
|
+
assert all(F[u] != F[v] for u in L for v in L[u])
|
|
840
|
+
assert all(len(L[u]) < num_colors for u in L)
|
|
841
|
+
assert all(len(C[x]) == s for x in C)
|
|
842
|
+
assert all(H[(c1, c2)] >= 0 for c1 in C for c2 in C)
|
|
843
|
+
assert all(N[(u, F[u])] == 0 for u in F)
|
|
844
|
+
|
|
845
|
+
|
|
846
|
+
def max_degree(G):
|
|
847
|
+
"""Get the maximum degree of any node in G."""
|
|
848
|
+
return max(G.degree(node) for node in G.nodes) if len(G.nodes) > 0 else 0
|
|
849
|
+
|
|
850
|
+
|
|
851
|
+
def make_params_from_graph(G, F):
|
|
852
|
+
"""Returns {N, L, H, C} from the given graph."""
|
|
853
|
+
num_nodes = len(G)
|
|
854
|
+
L = {u: [] for u in range(num_nodes)}
|
|
855
|
+
for u, v in G.edges:
|
|
856
|
+
L[u].append(v)
|
|
857
|
+
L[v].append(u)
|
|
858
|
+
|
|
859
|
+
C = nx.algorithms.coloring.equitable_coloring.make_C_from_F(F)
|
|
860
|
+
N = nx.algorithms.coloring.equitable_coloring.make_N_from_L_C(L, C)
|
|
861
|
+
H = nx.algorithms.coloring.equitable_coloring.make_H_from_C_N(C, N)
|
|
862
|
+
|
|
863
|
+
return {"N": N, "F": F, "C": C, "H": H, "L": L}
|