okstra 0.108.0 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
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- package/src/lib/skill-catalog.mjs +1 -0
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"""Graph analysis: god nodes (most connected), surprising connections (cross-community), suggested questions."""
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from __future__ import annotations
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import networkx as nx
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def _node_community_map(communities: dict[int, list[str]]) -> dict[str, int]:
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"""Invert communities dict: node_id -> community_id."""
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return {n: cid for cid, nodes in communities.items() for n in nodes}
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def _is_file_node(G: nx.Graph, node_id: str) -> bool:
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"""
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Return True if this node is a file-level hub node (e.g. 'client', 'models')
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or an AST method stub (e.g. '.auth_flow()', '.__init__()').
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These are synthetic nodes created by the AST extractor and should be excluded
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from god nodes, surprising connections, and knowledge gap reporting.
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"""
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from pathlib import Path as _Path
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return True
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# Method stub: AST extractor labels methods as '.method_name()'
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return True
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# Module-level function stub: labeled 'function_name()' - only has a contains edge
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return False
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"""Return the top_n most-connected real entities - the core abstractions.
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File-level hub nodes are excluded: they accumulate import/contains edges
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mechanically and don't represent meaningful architectural abstractions.
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"""
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Find connections that are genuinely surprising - not obvious from file structure.
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- Single-file / single-source corpora: cross-community edges that bridge
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data.get("source_file", "")
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def _is_concept_node(G: nx.Graph, node_id: str) -> bool:
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rather than a real entity found in source code.
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Signals:
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# Has no file extension → probably a concept label, not a real file
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from graphify.detect import CODE_EXTENSIONS, DOC_EXTENSIONS, PAPER_EXTENSIONS, IMAGE_EXTENSIONS
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def _top_level_dir(path: str) -> str:
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"""Return the first path component - used to detect cross-repo edges."""
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return path.split("/")[0] if "/" in path else path
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def _surprise_score(
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v: str,
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data: dict,
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node_community: dict[str, int],
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) -> tuple[int, list[str]]:
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"""Score how surprising a cross-file edge is. Returns (score, reasons)."""
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score = 0
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reasons: list[str] = []
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# 1. Confidence weight - uncertain connections are more noteworthy
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conf = data.get("confidence", "EXTRACTED")
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conf_bonus = {"AMBIGUOUS": 3, "INFERRED": 2, "EXTRACTED": 1}.get(conf, 1)
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score += conf_bonus
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if conf in ("AMBIGUOUS", "INFERRED"):
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reasons.append(f"{conf.lower()} connection - not explicitly stated in source")
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# 2. Cross file-type bonus - code↔paper or code↔image is non-obvious
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cat_v = _file_category(v_source)
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if cat_u != cat_v:
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score += 2
|
|
156
|
+
reasons.append(f"crosses file types ({cat_u} ↔ {cat_v})")
|
|
157
|
+
|
|
158
|
+
# 3. Cross-repo bonus - different top-level directory
|
|
159
|
+
if _top_level_dir(u_source) != _top_level_dir(v_source):
|
|
160
|
+
score += 2
|
|
161
|
+
reasons.append("connects across different repos/directories")
|
|
162
|
+
|
|
163
|
+
# 4. Cross-community bonus - Leiden says these are structurally distant
|
|
164
|
+
cid_u = node_community.get(u)
|
|
165
|
+
cid_v = node_community.get(v)
|
|
166
|
+
if cid_u is not None and cid_v is not None and cid_u != cid_v:
|
|
167
|
+
score += 1
|
|
168
|
+
reasons.append("bridges separate communities")
|
|
169
|
+
|
|
170
|
+
# 4b. Semantic similarity bonus - non-obvious conceptual links score higher
|
|
171
|
+
if data.get("relation") == "semantically_similar_to":
|
|
172
|
+
score = int(score * 1.5)
|
|
173
|
+
reasons.append("semantically similar concepts with no structural link")
|
|
174
|
+
|
|
175
|
+
# 5. Peripheral→hub: a low-degree node connecting to a high-degree one
|
|
176
|
+
deg_u = G.degree(u)
|
|
177
|
+
deg_v = G.degree(v)
|
|
178
|
+
if min(deg_u, deg_v) <= 2 and max(deg_u, deg_v) >= 5:
|
|
179
|
+
score += 1
|
|
180
|
+
peripheral = G.nodes[u].get("label", u) if deg_u <= 2 else G.nodes[v].get("label", v)
|
|
181
|
+
hub = G.nodes[v].get("label", v) if deg_u <= 2 else G.nodes[u].get("label", u)
|
|
182
|
+
reasons.append(f"peripheral node `{peripheral}` unexpectedly reaches hub `{hub}`")
|
|
183
|
+
|
|
184
|
+
return score, reasons
|
|
185
|
+
|
|
186
|
+
|
|
187
|
+
def _cross_file_surprises(G: nx.Graph, communities: dict[int, list[str]], top_n: int) -> list[dict]:
|
|
188
|
+
"""
|
|
189
|
+
Cross-file edges between real code/doc entities, ranked by a composite
|
|
190
|
+
surprise score rather than confidence alone.
|
|
191
|
+
|
|
192
|
+
Surprise score accounts for:
|
|
193
|
+
- Confidence (AMBIGUOUS > INFERRED > EXTRACTED)
|
|
194
|
+
- Cross file-type (code↔paper is more surprising than code↔code)
|
|
195
|
+
- Cross-repo (different top-level directory)
|
|
196
|
+
- Cross-community (Leiden says structurally distant)
|
|
197
|
+
- Peripheral→hub (low-degree node reaching a god node)
|
|
198
|
+
|
|
199
|
+
Each result includes a 'why' field explaining what makes it non-obvious.
|
|
200
|
+
"""
|
|
201
|
+
node_community = _node_community_map(communities)
|
|
202
|
+
candidates = []
|
|
203
|
+
|
|
204
|
+
for u, v, data in G.edges(data=True):
|
|
205
|
+
relation = data.get("relation", "")
|
|
206
|
+
if relation in ("imports", "imports_from", "contains", "method"):
|
|
207
|
+
continue
|
|
208
|
+
if _is_concept_node(G, u) or _is_concept_node(G, v):
|
|
209
|
+
continue
|
|
210
|
+
if _is_file_node(G, u) or _is_file_node(G, v):
|
|
211
|
+
continue
|
|
212
|
+
|
|
213
|
+
u_source = G.nodes[u].get("source_file", "")
|
|
214
|
+
v_source = G.nodes[v].get("source_file", "")
|
|
215
|
+
|
|
216
|
+
if not u_source or not v_source or u_source == v_source:
|
|
217
|
+
continue
|
|
218
|
+
|
|
219
|
+
score, reasons = _surprise_score(G, u, v, data, node_community, u_source, v_source)
|
|
220
|
+
src_id = data.get("_src", u)
|
|
221
|
+
if src_id not in G.nodes:
|
|
222
|
+
src_id = u
|
|
223
|
+
tgt_id = data.get("_tgt", v)
|
|
224
|
+
if tgt_id not in G.nodes:
|
|
225
|
+
tgt_id = v
|
|
226
|
+
candidates.append({
|
|
227
|
+
"_score": score,
|
|
228
|
+
"source": G.nodes[src_id].get("label", src_id),
|
|
229
|
+
"target": G.nodes[tgt_id].get("label", tgt_id),
|
|
230
|
+
"source_files": [
|
|
231
|
+
G.nodes[src_id].get("source_file", ""),
|
|
232
|
+
G.nodes[tgt_id].get("source_file", ""),
|
|
233
|
+
],
|
|
234
|
+
"confidence": data.get("confidence", "EXTRACTED"),
|
|
235
|
+
"relation": relation,
|
|
236
|
+
"why": "; ".join(reasons) if reasons else "cross-file semantic connection",
|
|
237
|
+
})
|
|
238
|
+
|
|
239
|
+
candidates.sort(key=lambda x: x["_score"], reverse=True)
|
|
240
|
+
for c in candidates:
|
|
241
|
+
c.pop("_score")
|
|
242
|
+
|
|
243
|
+
if candidates:
|
|
244
|
+
return candidates[:top_n]
|
|
245
|
+
|
|
246
|
+
return _cross_community_surprises(G, communities, top_n)
|
|
247
|
+
|
|
248
|
+
|
|
249
|
+
def _cross_community_surprises(
|
|
250
|
+
G: nx.Graph,
|
|
251
|
+
communities: dict[int, list[str]],
|
|
252
|
+
top_n: int,
|
|
253
|
+
) -> list[dict]:
|
|
254
|
+
"""
|
|
255
|
+
For single-source corpora: find edges that bridge different communities.
|
|
256
|
+
These are surprising because Leiden grouped everything else tightly -
|
|
257
|
+
these edges cut across the natural structure.
|
|
258
|
+
|
|
259
|
+
Falls back to high-betweenness edges if no community info is provided.
|
|
260
|
+
"""
|
|
261
|
+
if not communities:
|
|
262
|
+
# No community info - use edge betweenness centrality
|
|
263
|
+
if G.number_of_edges() == 0:
|
|
264
|
+
return []
|
|
265
|
+
if G.number_of_nodes() > 5000:
|
|
266
|
+
return []
|
|
267
|
+
betweenness = nx.edge_betweenness_centrality(G)
|
|
268
|
+
top_edges = sorted(betweenness.items(), key=lambda x: x[1], reverse=True)[:top_n]
|
|
269
|
+
result = []
|
|
270
|
+
for (u, v), score in top_edges:
|
|
271
|
+
data = G.edges[u, v]
|
|
272
|
+
result.append({
|
|
273
|
+
"source": G.nodes[u].get("label", u),
|
|
274
|
+
"target": G.nodes[v].get("label", v),
|
|
275
|
+
"source_files": [
|
|
276
|
+
G.nodes[u].get("source_file", ""),
|
|
277
|
+
G.nodes[v].get("source_file", ""),
|
|
278
|
+
],
|
|
279
|
+
"confidence": data.get("confidence", "EXTRACTED"),
|
|
280
|
+
"relation": data.get("relation", ""),
|
|
281
|
+
"note": f"Bridges graph structure (betweenness={score:.3f})",
|
|
282
|
+
})
|
|
283
|
+
return result
|
|
284
|
+
|
|
285
|
+
# Build node → community map
|
|
286
|
+
node_community = _node_community_map(communities)
|
|
287
|
+
|
|
288
|
+
surprises = []
|
|
289
|
+
for u, v, data in G.edges(data=True):
|
|
290
|
+
cid_u = node_community.get(u)
|
|
291
|
+
cid_v = node_community.get(v)
|
|
292
|
+
if cid_u is None or cid_v is None or cid_u == cid_v:
|
|
293
|
+
continue
|
|
294
|
+
# Skip file hub nodes and plain structural edges
|
|
295
|
+
if _is_file_node(G, u) or _is_file_node(G, v):
|
|
296
|
+
continue
|
|
297
|
+
relation = data.get("relation", "")
|
|
298
|
+
if relation in ("imports", "imports_from", "contains", "method"):
|
|
299
|
+
continue
|
|
300
|
+
# This edge crosses community boundaries - interesting
|
|
301
|
+
confidence = data.get("confidence", "EXTRACTED")
|
|
302
|
+
src_id = data.get("_src", u)
|
|
303
|
+
if src_id not in G.nodes:
|
|
304
|
+
src_id = u
|
|
305
|
+
tgt_id = data.get("_tgt", v)
|
|
306
|
+
if tgt_id not in G.nodes:
|
|
307
|
+
tgt_id = v
|
|
308
|
+
surprises.append({
|
|
309
|
+
"source": G.nodes[src_id].get("label", src_id),
|
|
310
|
+
"target": G.nodes[tgt_id].get("label", tgt_id),
|
|
311
|
+
"source_files": [
|
|
312
|
+
G.nodes[src_id].get("source_file", ""),
|
|
313
|
+
G.nodes[tgt_id].get("source_file", ""),
|
|
314
|
+
],
|
|
315
|
+
"confidence": confidence,
|
|
316
|
+
"relation": relation,
|
|
317
|
+
"note": f"Bridges community {cid_u} → community {cid_v}",
|
|
318
|
+
"_pair": tuple(sorted([cid_u, cid_v])),
|
|
319
|
+
})
|
|
320
|
+
|
|
321
|
+
# Sort: AMBIGUOUS first, then INFERRED, then EXTRACTED
|
|
322
|
+
order = {"AMBIGUOUS": 0, "INFERRED": 1, "EXTRACTED": 2}
|
|
323
|
+
surprises.sort(key=lambda x: order.get(x["confidence"], 3))
|
|
324
|
+
|
|
325
|
+
# Deduplicate by community pair - one representative edge per (A→B) boundary.
|
|
326
|
+
# Without this, a single high-betweenness god node dominates all results.
|
|
327
|
+
seen_pairs: set[tuple] = set()
|
|
328
|
+
deduped = []
|
|
329
|
+
for s in surprises:
|
|
330
|
+
pair = s.pop("_pair")
|
|
331
|
+
if pair not in seen_pairs:
|
|
332
|
+
seen_pairs.add(pair)
|
|
333
|
+
deduped.append(s)
|
|
334
|
+
return deduped[:top_n]
|
|
335
|
+
|
|
336
|
+
|
|
337
|
+
def suggest_questions(
|
|
338
|
+
G: nx.Graph,
|
|
339
|
+
communities: dict[int, list[str]],
|
|
340
|
+
community_labels: dict[int, str],
|
|
341
|
+
top_n: int = 7,
|
|
342
|
+
) -> list[dict]:
|
|
343
|
+
"""
|
|
344
|
+
Generate questions the graph is uniquely positioned to answer.
|
|
345
|
+
Based on: AMBIGUOUS edges, bridge nodes, underexplored god nodes, isolated nodes.
|
|
346
|
+
Each question has a 'type', 'question', and 'why' field.
|
|
347
|
+
"""
|
|
348
|
+
questions = []
|
|
349
|
+
node_community = _node_community_map(communities)
|
|
350
|
+
|
|
351
|
+
# 1. AMBIGUOUS edges → unresolved relationship questions
|
|
352
|
+
for u, v, data in G.edges(data=True):
|
|
353
|
+
if data.get("confidence") == "AMBIGUOUS":
|
|
354
|
+
ul = G.nodes[u].get("label", u)
|
|
355
|
+
vl = G.nodes[v].get("label", v)
|
|
356
|
+
relation = data.get("relation", "related to")
|
|
357
|
+
questions.append({
|
|
358
|
+
"type": "ambiguous_edge",
|
|
359
|
+
"question": f"What is the exact relationship between `{ul}` and `{vl}`?",
|
|
360
|
+
"why": f"Edge tagged AMBIGUOUS (relation: {relation}) - confidence is low.",
|
|
361
|
+
})
|
|
362
|
+
|
|
363
|
+
# 2. Bridge nodes (high betweenness) → cross-cutting concern questions
|
|
364
|
+
if G.number_of_edges() > 0:
|
|
365
|
+
k = min(100, G.number_of_nodes()) if G.number_of_nodes() > 1000 else None
|
|
366
|
+
betweenness = nx.betweenness_centrality(G, k=k)
|
|
367
|
+
# Top bridge nodes that are NOT file-level hubs
|
|
368
|
+
bridges = sorted(
|
|
369
|
+
[(n, s) for n, s in betweenness.items()
|
|
370
|
+
if not _is_file_node(G, n) and not _is_concept_node(G, n) and s > 0],
|
|
371
|
+
key=lambda x: x[1],
|
|
372
|
+
reverse=True,
|
|
373
|
+
)[:3]
|
|
374
|
+
for node_id, score in bridges:
|
|
375
|
+
label = G.nodes[node_id].get("label", node_id)
|
|
376
|
+
cid = node_community.get(node_id)
|
|
377
|
+
comm_label = community_labels.get(cid, f"Community {cid}") if cid is not None else "unknown"
|
|
378
|
+
neighbors = list(G.neighbors(node_id))
|
|
379
|
+
neighbor_comms = {node_community.get(n) for n in neighbors if node_community.get(n) != cid}
|
|
380
|
+
if neighbor_comms:
|
|
381
|
+
other_labels = [community_labels.get(c, f"Community {c}") for c in neighbor_comms]
|
|
382
|
+
questions.append({
|
|
383
|
+
"type": "bridge_node",
|
|
384
|
+
"question": f"Why does `{label}` connect `{comm_label}` to {', '.join(f'`{l}`' for l in other_labels)}?",
|
|
385
|
+
"why": f"High betweenness centrality ({score:.3f}) - this node is a cross-community bridge.",
|
|
386
|
+
})
|
|
387
|
+
|
|
388
|
+
# 3. God nodes with many INFERRED edges → verification questions
|
|
389
|
+
degree = dict(G.degree())
|
|
390
|
+
top_nodes = sorted(
|
|
391
|
+
[(n, d) for n, d in degree.items() if not _is_file_node(G, n)],
|
|
392
|
+
key=lambda x: x[1],
|
|
393
|
+
reverse=True,
|
|
394
|
+
)[:5]
|
|
395
|
+
for node_id, _ in top_nodes:
|
|
396
|
+
inferred = [
|
|
397
|
+
(u, v, d) for u, v, d in G.edges(node_id, data=True)
|
|
398
|
+
if d.get("confidence") == "INFERRED"
|
|
399
|
+
]
|
|
400
|
+
if len(inferred) >= 2:
|
|
401
|
+
label = G.nodes[node_id].get("label", node_id)
|
|
402
|
+
# Use _src/_tgt to get the correct direction; fall back to v (the other node)
|
|
403
|
+
others = []
|
|
404
|
+
for u, v, d in inferred[:2]:
|
|
405
|
+
src_id = d.get("_src", u)
|
|
406
|
+
if src_id not in G.nodes:
|
|
407
|
+
src_id = u
|
|
408
|
+
tgt_id = d.get("_tgt", v)
|
|
409
|
+
if tgt_id not in G.nodes:
|
|
410
|
+
tgt_id = v
|
|
411
|
+
other_id = tgt_id if src_id == node_id else src_id
|
|
412
|
+
others.append(G.nodes[other_id].get("label", other_id))
|
|
413
|
+
questions.append({
|
|
414
|
+
"type": "verify_inferred",
|
|
415
|
+
"question": f"Are the {len(inferred)} inferred relationships involving `{label}` (e.g. with `{others[0]}` and `{others[1]}`) actually correct?",
|
|
416
|
+
"why": f"`{label}` has {len(inferred)} INFERRED edges - model-reasoned connections that need verification.",
|
|
417
|
+
})
|
|
418
|
+
|
|
419
|
+
# 4. Isolated or weakly-connected nodes → exploration questions
|
|
420
|
+
isolated = [
|
|
421
|
+
n for n in G.nodes()
|
|
422
|
+
if G.degree(n) <= 1 and not _is_file_node(G, n) and not _is_concept_node(G, n)
|
|
423
|
+
]
|
|
424
|
+
if isolated:
|
|
425
|
+
labels = [G.nodes[n].get("label", n) for n in isolated[:3]]
|
|
426
|
+
questions.append({
|
|
427
|
+
"type": "isolated_nodes",
|
|
428
|
+
"question": f"What connects {', '.join(f'`{l}`' for l in labels)} to the rest of the system?",
|
|
429
|
+
"why": f"{len(isolated)} weakly-connected nodes found - possible documentation gaps or missing edges.",
|
|
430
|
+
})
|
|
431
|
+
|
|
432
|
+
# 5. Low-cohesion communities → structural questions
|
|
433
|
+
from .cluster import cohesion_score
|
|
434
|
+
for cid, nodes in communities.items():
|
|
435
|
+
score = cohesion_score(G, nodes)
|
|
436
|
+
if score < 0.15 and len(nodes) >= 5:
|
|
437
|
+
label = community_labels.get(cid, f"Community {cid}")
|
|
438
|
+
questions.append({
|
|
439
|
+
"type": "low_cohesion",
|
|
440
|
+
"question": f"Should `{label}` be split into smaller, more focused modules?",
|
|
441
|
+
"why": f"Cohesion score {score} - nodes in this community are weakly interconnected.",
|
|
442
|
+
})
|
|
443
|
+
|
|
444
|
+
if not questions:
|
|
445
|
+
return [{
|
|
446
|
+
"type": "no_signal",
|
|
447
|
+
"question": None,
|
|
448
|
+
"why": (
|
|
449
|
+
"Not enough signal to generate questions. "
|
|
450
|
+
"This usually means the corpus has no AMBIGUOUS edges, no bridge nodes, "
|
|
451
|
+
"no INFERRED relationships, and all communities are tightly cohesive. "
|
|
452
|
+
"Add more files or run with --mode deep to extract richer edges."
|
|
453
|
+
),
|
|
454
|
+
}]
|
|
455
|
+
|
|
456
|
+
return questions[:top_n]
|
|
457
|
+
|
|
458
|
+
|
|
459
|
+
def graph_diff(G_old: nx.Graph, G_new: nx.Graph) -> dict:
|
|
460
|
+
"""Compare two graph snapshots and return what changed.
|
|
461
|
+
|
|
462
|
+
Returns:
|
|
463
|
+
{
|
|
464
|
+
"new_nodes": [{"id": ..., "label": ...}],
|
|
465
|
+
"removed_nodes": [{"id": ..., "label": ...}],
|
|
466
|
+
"new_edges": [{"source": ..., "target": ..., "relation": ..., "confidence": ...}],
|
|
467
|
+
"removed_edges": [...],
|
|
468
|
+
"summary": "3 new nodes, 5 new edges, 1 node removed"
|
|
469
|
+
}
|
|
470
|
+
"""
|
|
471
|
+
old_nodes = set(G_old.nodes())
|
|
472
|
+
new_nodes = set(G_new.nodes())
|
|
473
|
+
|
|
474
|
+
added_node_ids = new_nodes - old_nodes
|
|
475
|
+
removed_node_ids = old_nodes - new_nodes
|
|
476
|
+
|
|
477
|
+
new_nodes_list = [
|
|
478
|
+
{"id": n, "label": G_new.nodes[n].get("label", n)}
|
|
479
|
+
for n in added_node_ids
|
|
480
|
+
]
|
|
481
|
+
removed_nodes_list = [
|
|
482
|
+
{"id": n, "label": G_old.nodes[n].get("label", n)}
|
|
483
|
+
for n in removed_node_ids
|
|
484
|
+
]
|
|
485
|
+
|
|
486
|
+
def edge_key(G: nx.Graph, u: str, v: str, data: dict) -> tuple:
|
|
487
|
+
if G.is_directed():
|
|
488
|
+
return (u, v, data.get("relation", ""))
|
|
489
|
+
return (min(u, v), max(u, v), data.get("relation", ""))
|
|
490
|
+
|
|
491
|
+
old_edge_keys = {
|
|
492
|
+
edge_key(G_old, u, v, d)
|
|
493
|
+
for u, v, d in G_old.edges(data=True)
|
|
494
|
+
}
|
|
495
|
+
new_edge_keys = {
|
|
496
|
+
edge_key(G_new, u, v, d)
|
|
497
|
+
for u, v, d in G_new.edges(data=True)
|
|
498
|
+
}
|
|
499
|
+
|
|
500
|
+
added_edge_keys = new_edge_keys - old_edge_keys
|
|
501
|
+
removed_edge_keys = old_edge_keys - new_edge_keys
|
|
502
|
+
|
|
503
|
+
new_edges_list = []
|
|
504
|
+
for u, v, d in G_new.edges(data=True):
|
|
505
|
+
if edge_key(G_new, u, v, d) in added_edge_keys:
|
|
506
|
+
new_edges_list.append({
|
|
507
|
+
"source": u,
|
|
508
|
+
"target": v,
|
|
509
|
+
"relation": d.get("relation", ""),
|
|
510
|
+
"confidence": d.get("confidence", ""),
|
|
511
|
+
})
|
|
512
|
+
|
|
513
|
+
removed_edges_list = []
|
|
514
|
+
for u, v, d in G_old.edges(data=True):
|
|
515
|
+
if edge_key(G_old, u, v, d) in removed_edge_keys:
|
|
516
|
+
removed_edges_list.append({
|
|
517
|
+
"source": u,
|
|
518
|
+
"target": v,
|
|
519
|
+
"relation": d.get("relation", ""),
|
|
520
|
+
"confidence": d.get("confidence", ""),
|
|
521
|
+
})
|
|
522
|
+
|
|
523
|
+
parts = []
|
|
524
|
+
if new_nodes_list:
|
|
525
|
+
parts.append(f"{len(new_nodes_list)} new node{'s' if len(new_nodes_list) != 1 else ''}")
|
|
526
|
+
if new_edges_list:
|
|
527
|
+
parts.append(f"{len(new_edges_list)} new edge{'s' if len(new_edges_list) != 1 else ''}")
|
|
528
|
+
if removed_nodes_list:
|
|
529
|
+
parts.append(f"{len(removed_nodes_list)} node{'s' if len(removed_nodes_list) != 1 else ''} removed")
|
|
530
|
+
if removed_edges_list:
|
|
531
|
+
parts.append(f"{len(removed_edges_list)} edge{'s' if len(removed_edges_list) != 1 else ''} removed")
|
|
532
|
+
summary = ", ".join(parts) if parts else "no changes"
|
|
533
|
+
|
|
534
|
+
return {
|
|
535
|
+
"new_nodes": new_nodes_list,
|
|
536
|
+
"removed_nodes": removed_nodes_list,
|
|
537
|
+
"new_edges": new_edges_list,
|
|
538
|
+
"removed_edges": removed_edges_list,
|
|
539
|
+
"summary": summary,
|
|
540
|
+
}
|
|
@@ -0,0 +1,129 @@
|
|
|
1
|
+
"""Token-reduction benchmark - measures how much context graphify saves vs naive full-corpus approach."""
|
|
2
|
+
from __future__ import annotations
|
|
3
|
+
import json
|
|
4
|
+
from pathlib import Path
|
|
5
|
+
import networkx as nx
|
|
6
|
+
from networkx.readwrite import json_graph
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
_CHARS_PER_TOKEN = 4 # standard approximation
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
def _estimate_tokens(text: str) -> int:
|
|
13
|
+
return max(1, len(text) // _CHARS_PER_TOKEN)
|
|
14
|
+
|
|
15
|
+
|
|
16
|
+
def _query_subgraph_tokens(G: nx.Graph, question: str, depth: int = 3) -> int:
|
|
17
|
+
"""Run BFS from best-matching nodes and return estimated tokens in the subgraph context."""
|
|
18
|
+
terms = [t.lower() for t in question.split() if len(t) > 2]
|
|
19
|
+
scored = []
|
|
20
|
+
for nid, data in G.nodes(data=True):
|
|
21
|
+
label = data.get("label", "").lower()
|
|
22
|
+
score = sum(1 for t in terms if t in label)
|
|
23
|
+
if score > 0:
|
|
24
|
+
scored.append((score, nid))
|
|
25
|
+
scored.sort(reverse=True)
|
|
26
|
+
start_nodes = [nid for _, nid in scored[:3]]
|
|
27
|
+
if not start_nodes:
|
|
28
|
+
return 0
|
|
29
|
+
|
|
30
|
+
visited: set[str] = set(start_nodes)
|
|
31
|
+
frontier = set(start_nodes)
|
|
32
|
+
edges_seen: list[tuple] = []
|
|
33
|
+
for _ in range(depth):
|
|
34
|
+
next_frontier: set[str] = set()
|
|
35
|
+
for n in frontier:
|
|
36
|
+
for neighbor in G.neighbors(n):
|
|
37
|
+
if neighbor not in visited:
|
|
38
|
+
next_frontier.add(neighbor)
|
|
39
|
+
edges_seen.append((n, neighbor))
|
|
40
|
+
visited.update(next_frontier)
|
|
41
|
+
frontier = next_frontier
|
|
42
|
+
|
|
43
|
+
lines = []
|
|
44
|
+
for nid in visited:
|
|
45
|
+
d = G.nodes[nid]
|
|
46
|
+
lines.append(f"NODE {d.get('label', nid)} src={d.get('source_file', '')} loc={d.get('source_location', '')}")
|
|
47
|
+
for u, v in edges_seen:
|
|
48
|
+
if u in visited and v in visited:
|
|
49
|
+
d = G.edges[u, v]
|
|
50
|
+
lines.append(f"EDGE {G.nodes[u].get('label', u)} --{d.get('relation', '')}--> {G.nodes[v].get('label', v)}")
|
|
51
|
+
|
|
52
|
+
return _estimate_tokens("\n".join(lines))
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
_SAMPLE_QUESTIONS = [
|
|
56
|
+
"how does authentication work",
|
|
57
|
+
"what is the main entry point",
|
|
58
|
+
"how are errors handled",
|
|
59
|
+
"what connects the data layer to the api",
|
|
60
|
+
"what are the core abstractions",
|
|
61
|
+
]
|
|
62
|
+
|
|
63
|
+
|
|
64
|
+
def run_benchmark(
|
|
65
|
+
graph_path: str = "graphify-out/graph.json",
|
|
66
|
+
corpus_words: int | None = None,
|
|
67
|
+
questions: list[str] | None = None,
|
|
68
|
+
) -> dict:
|
|
69
|
+
"""Measure token reduction: corpus tokens vs graphify query tokens.
|
|
70
|
+
|
|
71
|
+
Args:
|
|
72
|
+
graph_path: path to the built graph
|
|
73
|
+
corpus_words: total word count from detect() output; if None, estimated from graph
|
|
74
|
+
questions: list of questions to benchmark; defaults to _SAMPLE_QUESTIONS
|
|
75
|
+
|
|
76
|
+
Returns dict with: corpus_tokens, avg_query_tokens, reduction_ratio, per_question
|
|
77
|
+
"""
|
|
78
|
+
data = json.loads(Path(graph_path).read_text(encoding="utf-8"))
|
|
79
|
+
try:
|
|
80
|
+
G = json_graph.node_link_graph(data, edges="links")
|
|
81
|
+
except TypeError:
|
|
82
|
+
G = json_graph.node_link_graph(data)
|
|
83
|
+
|
|
84
|
+
if corpus_words is None:
|
|
85
|
+
# Rough estimate: each node label is ~3 words, plus source context
|
|
86
|
+
corpus_words = G.number_of_nodes() * 50
|
|
87
|
+
|
|
88
|
+
corpus_tokens = corpus_words * 100 // 75 # words → tokens (100 words ≈ 133 tokens)
|
|
89
|
+
|
|
90
|
+
qs = questions or _SAMPLE_QUESTIONS
|
|
91
|
+
per_question = []
|
|
92
|
+
for q in qs:
|
|
93
|
+
qt = _query_subgraph_tokens(G, q)
|
|
94
|
+
if qt > 0:
|
|
95
|
+
per_question.append({"question": q, "query_tokens": qt, "reduction": round(corpus_tokens / qt, 1)})
|
|
96
|
+
|
|
97
|
+
if not per_question:
|
|
98
|
+
return {"error": "No matching nodes found for sample questions. Build the graph first."}
|
|
99
|
+
|
|
100
|
+
avg_query_tokens = sum(p["query_tokens"] for p in per_question) // len(per_question)
|
|
101
|
+
reduction_ratio = round(corpus_tokens / avg_query_tokens, 1) if avg_query_tokens > 0 else 0
|
|
102
|
+
|
|
103
|
+
return {
|
|
104
|
+
"corpus_tokens": corpus_tokens,
|
|
105
|
+
"corpus_words": corpus_words,
|
|
106
|
+
"nodes": G.number_of_nodes(),
|
|
107
|
+
"edges": G.number_of_edges(),
|
|
108
|
+
"avg_query_tokens": avg_query_tokens,
|
|
109
|
+
"reduction_ratio": reduction_ratio,
|
|
110
|
+
"per_question": per_question,
|
|
111
|
+
}
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
def print_benchmark(result: dict) -> None:
|
|
115
|
+
"""Print a human-readable benchmark report."""
|
|
116
|
+
if "error" in result:
|
|
117
|
+
print(f"Benchmark error: {result['error']}")
|
|
118
|
+
return
|
|
119
|
+
|
|
120
|
+
print(f"\ngraphify token reduction benchmark")
|
|
121
|
+
print(f"{'─' * 50}")
|
|
122
|
+
print(f" Corpus: {result['corpus_words']:,} words → ~{result['corpus_tokens']:,} tokens (naive)")
|
|
123
|
+
print(f" Graph: {result['nodes']:,} nodes, {result['edges']:,} edges")
|
|
124
|
+
print(f" Avg query cost: ~{result['avg_query_tokens']:,} tokens")
|
|
125
|
+
print(f" Reduction: {result['reduction_ratio']}x fewer tokens per query")
|
|
126
|
+
print(f"\n Per question:")
|
|
127
|
+
for p in result["per_question"]:
|
|
128
|
+
print(f" [{p['reduction']}x] {p['question'][:55]}")
|
|
129
|
+
print()
|