okstra 0.108.0 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
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- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +72 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +195 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +15 -0
- package/runtime/python/okstra_vendor/networkx/generators/time_series.py +74 -0
- package/runtime/python/okstra_vendor/networkx/generators/trees.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/triads.py +94 -0
- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
- package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +512 -0
- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +879 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +427 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +1053 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +156 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +48 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +137 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +108 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +393 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +113 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +286 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +379 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +354 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +318 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +612 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +744 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +181 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +1531 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +30 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +63 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +128 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +166 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +1742 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/text.py +851 -0
- package/runtime/python/okstra_vendor/networkx/relabel.py +285 -0
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +248 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +321 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +531 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +281 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +40 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +11 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +96 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/__init__.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/backends.py +2171 -0
- package/runtime/python/okstra_vendor/networkx/utils/configs.py +396 -0
- package/runtime/python/okstra_vendor/networkx/utils/decorators.py +1233 -0
- package/runtime/python/okstra_vendor/networkx/utils/heaps.py +338 -0
- package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +297 -0
- package/runtime/python/okstra_vendor/networkx/utils/misc.py +703 -0
- package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +198 -0
- package/runtime/python/okstra_vendor/networkx/utils/rcm.py +159 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +11 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +225 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +263 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +510 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +131 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +268 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +393 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +53 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +63 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +55 -0
- package/runtime/python/okstra_vendor/networkx/utils/union_find.py +106 -0
- package/runtime/skills/okstra-graphify/SKILL.md +161 -0
- package/runtime/skills/okstra-inspect/SKILL.md +17 -9
- package/runtime/templates/reports/settings.template.json +4 -0
- package/src/cli-registry.mjs +7 -0
- package/src/commands/graphify.mjs +32 -0
- package/src/commands/lifecycle/doctor.mjs +9 -0
- package/src/lib/skill-catalog.mjs +1 -0
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Unit tests for adjlist.
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import io
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import pytest
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import networkx as nx
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from networkx.utils import edges_equal, graphs_equal, nodes_equal
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class TestGenerateAdjlist:
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@pytest.mark.parametrize("graph_type", [nx.Graph, nx.MultiGraph])
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def test_undirected(self, graph_type):
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G = nx.complete_graph(5, create_using=graph_type)
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lines = [
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"0 1 2 3 4",
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"1 2 3 4",
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"2 3 4",
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"3 4",
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"4",
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]
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assert list(nx.generate_adjlist(G)) == lines
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@pytest.mark.parametrize("graph_type", [nx.DiGraph, nx.MultiDiGraph])
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def test_directed(self, graph_type):
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G = nx.complete_graph(5, create_using=graph_type)
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lines = [
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"0 1 2 3 4",
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"1 0 2 3 4",
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"2 0 1 3 4",
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"4 0 1 2 3",
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]
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assert list(nx.generate_adjlist(G)) == lines
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G = nx.path_graph(5, create_using=graph_type)
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G.add_edge(1, 0)
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lines = [
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"0 1",
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"1 2 0",
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"2 3",
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"3 4",
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"4",
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]
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assert list(nx.generate_adjlist(G)) == lines
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@pytest.mark.parametrize("delimiter", [" ", ",", "\t"])
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def test_delimiter(self, delimiter):
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G = nx.complete_graph(3)
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lines = [
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f"0{delimiter}1{delimiter}2",
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f"1{delimiter}2",
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f"2",
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]
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assert list(nx.generate_adjlist(G, delimiter=delimiter)) == lines
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def test_multiple_edges_undirected(self):
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lines = [
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"1 2",
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"2",
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]
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assert list(nx.generate_adjlist(G)) == lines
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def test_multiple_edges_directed(self):
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G = nx.complete_graph(3, create_using=nx.MultiDiGraph)
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G.add_edge(0, 1)
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lines = [
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"0 1 1 2",
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"1 0 2",
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"2 0 1",
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]
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assert list(nx.generate_adjlist(G)) == lines
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G.add_edge(1, 0)
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lines[1] = "1 0 0 2"
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assert list(nx.generate_adjlist(G)) == lines
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def test_multiple_edges_with_data(self):
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G = nx.complete_graph(3, create_using=nx.MultiGraph)
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G.add_edge(0, 1, weight=1)
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G.add_edge(0, 1, weight=2)
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lines = [
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"0 1 1 1 2",
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"1 2",
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"2",
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]
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assert list(nx.generate_adjlist(G)) == lines
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def test_with_self_loop(self):
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G = nx.complete_graph(3)
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G.add_edge(0, 0)
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lines = [
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"0 1 2 0",
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"1 2",
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"2",
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]
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assert list(nx.generate_adjlist(G)) == lines
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class TestAdjlist:
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@classmethod
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def setup_class(cls):
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cls.G = nx.Graph(name="test")
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e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
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cls.G.add_edges_from(e)
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cls.G.add_node("g")
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cls.DG = nx.DiGraph(cls.G)
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cls.XG = nx.MultiGraph()
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cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
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cls.XDG = nx.MultiDiGraph(cls.XG)
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def test_read_multiline_adjlist_1(self):
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# Unit test for https://networkx.lanl.gov/trac/ticket/252
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s = b"""# comment line
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1 2
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# comment line
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3
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"""
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bytesIO = io.BytesIO(s)
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G = nx.read_multiline_adjlist(bytesIO)
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adj = {"1": {"3": {}, "2": {}}, "3": {"1": {}}, "2": {"1": {}}}
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assert graphs_equal(G, nx.Graph(adj))
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def test_unicode(self, tmp_path):
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G = nx.Graph()
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name1 = chr(2344) + chr(123) + chr(6543)
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name2 = chr(5543) + chr(1543) + chr(324)
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G.add_edge(name1, "Radiohead", **{name2: 3})
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fname = tmp_path / "adjlist.txt"
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nx.write_multiline_adjlist(G, fname)
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H = nx.read_multiline_adjlist(fname)
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assert graphs_equal(G, H)
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141
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def test_latin1_err(self, tmp_path):
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G = nx.Graph()
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name1 = chr(2344) + chr(123) + chr(6543)
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name2 = chr(5543) + chr(1543) + chr(324)
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G.add_edge(name1, "Radiohead", **{name2: 3})
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fname = tmp_path / "adjlist.txt"
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147
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with pytest.raises(UnicodeEncodeError):
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nx.write_multiline_adjlist(G, fname, encoding="latin-1")
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150
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def test_latin1(self, tmp_path):
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G = nx.Graph()
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152
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name1 = "Bj" + chr(246) + "rk"
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153
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name2 = chr(220) + "ber"
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154
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G.add_edge(name1, "Radiohead", **{name2: 3})
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+
fname = tmp_path / "adjlist.txt"
|
|
156
|
+
nx.write_multiline_adjlist(G, fname, encoding="latin-1")
|
|
157
|
+
H = nx.read_multiline_adjlist(fname, encoding="latin-1")
|
|
158
|
+
assert graphs_equal(G, H)
|
|
159
|
+
|
|
160
|
+
def test_parse_adjlist(self):
|
|
161
|
+
lines = ["1 2 5", "2 3 4", "3 5", "4", "5"]
|
|
162
|
+
nx.parse_adjlist(lines, nodetype=int) # smoke test
|
|
163
|
+
with pytest.raises(TypeError):
|
|
164
|
+
nx.parse_adjlist(lines, nodetype="int")
|
|
165
|
+
lines = ["1 2 5", "2 b", "c"]
|
|
166
|
+
with pytest.raises(TypeError):
|
|
167
|
+
nx.parse_adjlist(lines, nodetype=int)
|
|
168
|
+
|
|
169
|
+
def test_adjlist_graph(self, tmp_path):
|
|
170
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+
G = self.G
|
|
171
|
+
fname = tmp_path / "adjlist.txt"
|
|
172
|
+
nx.write_adjlist(G, fname)
|
|
173
|
+
H = nx.read_adjlist(fname)
|
|
174
|
+
H2 = nx.read_adjlist(fname)
|
|
175
|
+
assert H is not H2 # they should be different graphs
|
|
176
|
+
assert nodes_equal(list(H), list(G))
|
|
177
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+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
178
|
+
|
|
179
|
+
def test_adjlist_digraph(self, tmp_path):
|
|
180
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+
G = self.DG
|
|
181
|
+
fname = tmp_path / "adjlist.txt"
|
|
182
|
+
nx.write_adjlist(G, fname)
|
|
183
|
+
H = nx.read_adjlist(fname, create_using=nx.DiGraph())
|
|
184
|
+
H2 = nx.read_adjlist(fname, create_using=nx.DiGraph())
|
|
185
|
+
assert H is not H2 # they should be different graphs
|
|
186
|
+
assert nodes_equal(list(H), list(G))
|
|
187
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
188
|
+
|
|
189
|
+
def test_adjlist_integers(self, tmp_path):
|
|
190
|
+
fname = tmp_path / "adjlist.txt"
|
|
191
|
+
G = nx.convert_node_labels_to_integers(self.G)
|
|
192
|
+
nx.write_adjlist(G, fname)
|
|
193
|
+
H = nx.read_adjlist(fname, nodetype=int)
|
|
194
|
+
H2 = nx.read_adjlist(fname, nodetype=int)
|
|
195
|
+
assert H is not H2 # they should be different graphs
|
|
196
|
+
assert nodes_equal(list(H), list(G))
|
|
197
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
198
|
+
|
|
199
|
+
def test_adjlist_multigraph(self, tmp_path):
|
|
200
|
+
G = self.XG
|
|
201
|
+
fname = tmp_path / "adjlist.txt"
|
|
202
|
+
nx.write_adjlist(G, fname)
|
|
203
|
+
H = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
|
|
204
|
+
H2 = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
|
|
205
|
+
assert H is not H2 # they should be different graphs
|
|
206
|
+
assert nodes_equal(list(H), list(G))
|
|
207
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
208
|
+
|
|
209
|
+
def test_adjlist_multidigraph(self, tmp_path):
|
|
210
|
+
G = self.XDG
|
|
211
|
+
fname = tmp_path / "adjlist.txt"
|
|
212
|
+
nx.write_adjlist(G, fname)
|
|
213
|
+
H = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiDiGraph())
|
|
214
|
+
H2 = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiDiGraph())
|
|
215
|
+
assert H is not H2 # they should be different graphs
|
|
216
|
+
assert nodes_equal(list(H), list(G))
|
|
217
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
218
|
+
|
|
219
|
+
def test_adjlist_delimiter(self):
|
|
220
|
+
fh = io.BytesIO()
|
|
221
|
+
G = nx.path_graph(3)
|
|
222
|
+
nx.write_adjlist(G, fh, delimiter=":")
|
|
223
|
+
fh.seek(0)
|
|
224
|
+
H = nx.read_adjlist(fh, nodetype=int, delimiter=":")
|
|
225
|
+
assert nodes_equal(list(H), list(G))
|
|
226
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
227
|
+
|
|
228
|
+
|
|
229
|
+
class TestMultilineAdjlist:
|
|
230
|
+
@classmethod
|
|
231
|
+
def setup_class(cls):
|
|
232
|
+
cls.G = nx.Graph(name="test")
|
|
233
|
+
e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
|
|
234
|
+
cls.G.add_edges_from(e)
|
|
235
|
+
cls.G.add_node("g")
|
|
236
|
+
cls.DG = nx.DiGraph(cls.G)
|
|
237
|
+
cls.DG.remove_edge("b", "a")
|
|
238
|
+
cls.DG.remove_edge("b", "c")
|
|
239
|
+
cls.XG = nx.MultiGraph()
|
|
240
|
+
cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
|
|
241
|
+
cls.XDG = nx.MultiDiGraph(cls.XG)
|
|
242
|
+
|
|
243
|
+
def test_parse_multiline_adjlist(self):
|
|
244
|
+
lines = [
|
|
245
|
+
"1 2",
|
|
246
|
+
"b {'weight':3, 'name': 'Frodo'}",
|
|
247
|
+
"c {}",
|
|
248
|
+
"d 1",
|
|
249
|
+
"e {'weight':6, 'name': 'Saruman'}",
|
|
250
|
+
]
|
|
251
|
+
nx.parse_multiline_adjlist(iter(lines)) # smoke test
|
|
252
|
+
with pytest.raises(TypeError):
|
|
253
|
+
nx.parse_multiline_adjlist(iter(lines), nodetype=int)
|
|
254
|
+
nx.parse_multiline_adjlist(iter(lines), edgetype=str) # smoke test
|
|
255
|
+
with pytest.raises(TypeError):
|
|
256
|
+
nx.parse_multiline_adjlist(iter(lines), nodetype=int)
|
|
257
|
+
lines = ["1 a"]
|
|
258
|
+
with pytest.raises(TypeError):
|
|
259
|
+
nx.parse_multiline_adjlist(iter(lines))
|
|
260
|
+
lines = ["a 2"]
|
|
261
|
+
with pytest.raises(TypeError):
|
|
262
|
+
nx.parse_multiline_adjlist(iter(lines), nodetype=int)
|
|
263
|
+
lines = ["1 2"]
|
|
264
|
+
with pytest.raises(TypeError):
|
|
265
|
+
nx.parse_multiline_adjlist(iter(lines))
|
|
266
|
+
lines = ["1 2", "2 {}"]
|
|
267
|
+
with pytest.raises(TypeError):
|
|
268
|
+
nx.parse_multiline_adjlist(iter(lines))
|
|
269
|
+
|
|
270
|
+
def test_multiline_adjlist_graph(self, tmp_path):
|
|
271
|
+
G = self.G
|
|
272
|
+
fname = tmp_path / "adjlist.txt"
|
|
273
|
+
nx.write_multiline_adjlist(G, fname)
|
|
274
|
+
H = nx.read_multiline_adjlist(fname)
|
|
275
|
+
H2 = nx.read_multiline_adjlist(fname)
|
|
276
|
+
assert H is not H2 # they should be different graphs
|
|
277
|
+
assert nodes_equal(list(H), list(G))
|
|
278
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
279
|
+
|
|
280
|
+
def test_multiline_adjlist_digraph(self, tmp_path):
|
|
281
|
+
G = self.DG
|
|
282
|
+
fname = tmp_path / "adjlist.txt"
|
|
283
|
+
nx.write_multiline_adjlist(G, fname)
|
|
284
|
+
H = nx.read_multiline_adjlist(fname, create_using=nx.DiGraph())
|
|
285
|
+
H2 = nx.read_multiline_adjlist(fname, create_using=nx.DiGraph())
|
|
286
|
+
assert H is not H2 # they should be different graphs
|
|
287
|
+
assert nodes_equal(list(H), list(G))
|
|
288
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
289
|
+
|
|
290
|
+
def test_multiline_adjlist_integers(self, tmp_path):
|
|
291
|
+
fname = tmp_path / "adjlist.txt"
|
|
292
|
+
G = nx.convert_node_labels_to_integers(self.G)
|
|
293
|
+
nx.write_multiline_adjlist(G, fname)
|
|
294
|
+
H = nx.read_multiline_adjlist(fname, nodetype=int)
|
|
295
|
+
H2 = nx.read_multiline_adjlist(fname, nodetype=int)
|
|
296
|
+
assert H is not H2 # they should be different graphs
|
|
297
|
+
assert nodes_equal(list(H), list(G))
|
|
298
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
299
|
+
|
|
300
|
+
def test_multiline_adjlist_multigraph(self, tmp_path):
|
|
301
|
+
G = self.XG
|
|
302
|
+
fname = tmp_path / "adjlist.txt"
|
|
303
|
+
nx.write_multiline_adjlist(G, fname)
|
|
304
|
+
H = nx.read_multiline_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
|
|
305
|
+
H2 = nx.read_multiline_adjlist(
|
|
306
|
+
fname, nodetype=int, create_using=nx.MultiGraph()
|
|
307
|
+
)
|
|
308
|
+
assert H is not H2 # they should be different graphs
|
|
309
|
+
assert nodes_equal(list(H), list(G))
|
|
310
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
311
|
+
|
|
312
|
+
def test_multiline_adjlist_multidigraph(self, tmp_path):
|
|
313
|
+
G = self.XDG
|
|
314
|
+
fname = tmp_path / "adjlist.txt"
|
|
315
|
+
nx.write_multiline_adjlist(G, fname)
|
|
316
|
+
H = nx.read_multiline_adjlist(
|
|
317
|
+
fname, nodetype=int, create_using=nx.MultiDiGraph()
|
|
318
|
+
)
|
|
319
|
+
H2 = nx.read_multiline_adjlist(
|
|
320
|
+
fname, nodetype=int, create_using=nx.MultiDiGraph()
|
|
321
|
+
)
|
|
322
|
+
assert H is not H2 # they should be different graphs
|
|
323
|
+
assert nodes_equal(list(H), list(G))
|
|
324
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
325
|
+
|
|
326
|
+
def test_multiline_adjlist_delimiter(self):
|
|
327
|
+
fh = io.BytesIO()
|
|
328
|
+
G = nx.path_graph(3)
|
|
329
|
+
nx.write_multiline_adjlist(G, fh, delimiter=":")
|
|
330
|
+
fh.seek(0)
|
|
331
|
+
H = nx.read_multiline_adjlist(fh, nodetype=int, delimiter=":")
|
|
332
|
+
assert nodes_equal(list(H), list(G))
|
|
333
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
334
|
+
|
|
335
|
+
|
|
336
|
+
@pytest.mark.parametrize(
|
|
337
|
+
("lines", "delim"),
|
|
338
|
+
(
|
|
339
|
+
(["1 2 5", "2 3 4", "3 5", "4", "5"], None), # No extra whitespace
|
|
340
|
+
(["1\t2\t5", "2\t3\t4", "3\t5", "4", "5"], "\t"), # tab-delimited
|
|
341
|
+
(
|
|
342
|
+
["1\t2\t5", "2\t3\t4", "3\t5\t", "4\t", "5"],
|
|
343
|
+
"\t",
|
|
344
|
+
), # tab-delimited, extra delims
|
|
345
|
+
(
|
|
346
|
+
["1\t2\t5", "2\t3\t4", "3\t5\t\t\n", "4\t", "5"],
|
|
347
|
+
"\t",
|
|
348
|
+
), # extra delim+newlines
|
|
349
|
+
),
|
|
350
|
+
)
|
|
351
|
+
def test_adjlist_rstrip_parsing(lines, delim):
|
|
352
|
+
"""Regression test related to gh-7465"""
|
|
353
|
+
expected = nx.Graph([(1, 2), (1, 5), (2, 3), (2, 4), (3, 5)])
|
|
354
|
+
nx.utils.graphs_equal(nx.parse_adjlist(lines, delimiter=delim), expected)
|
|
@@ -0,0 +1,318 @@
|
|
|
1
|
+
"""
|
|
2
|
+
Unit tests for edgelists.
|
|
3
|
+
"""
|
|
4
|
+
|
|
5
|
+
import io
|
|
6
|
+
import textwrap
|
|
7
|
+
|
|
8
|
+
import pytest
|
|
9
|
+
|
|
10
|
+
import networkx as nx
|
|
11
|
+
from networkx.utils import edges_equal, graphs_equal, nodes_equal
|
|
12
|
+
|
|
13
|
+
edges_no_data = textwrap.dedent(
|
|
14
|
+
"""
|
|
15
|
+
# comment line
|
|
16
|
+
1 2
|
|
17
|
+
# comment line
|
|
18
|
+
2 3
|
|
19
|
+
"""
|
|
20
|
+
)
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
edges_with_values = textwrap.dedent(
|
|
24
|
+
"""
|
|
25
|
+
# comment line
|
|
26
|
+
1 2 2.0
|
|
27
|
+
# comment line
|
|
28
|
+
2 3 3.0
|
|
29
|
+
"""
|
|
30
|
+
)
|
|
31
|
+
|
|
32
|
+
|
|
33
|
+
edges_with_weight = textwrap.dedent(
|
|
34
|
+
"""
|
|
35
|
+
# comment line
|
|
36
|
+
1 2 {'weight':2.0}
|
|
37
|
+
# comment line
|
|
38
|
+
2 3 {'weight':3.0}
|
|
39
|
+
"""
|
|
40
|
+
)
|
|
41
|
+
|
|
42
|
+
|
|
43
|
+
edges_with_multiple_attrs = textwrap.dedent(
|
|
44
|
+
"""
|
|
45
|
+
# comment line
|
|
46
|
+
1 2 {'weight':2.0, 'color':'green'}
|
|
47
|
+
# comment line
|
|
48
|
+
2 3 {'weight':3.0, 'color':'red'}
|
|
49
|
+
"""
|
|
50
|
+
)
|
|
51
|
+
|
|
52
|
+
|
|
53
|
+
edges_with_multiple_attrs_csv = textwrap.dedent(
|
|
54
|
+
"""
|
|
55
|
+
# comment line
|
|
56
|
+
1, 2, {'weight':2.0, 'color':'green'}
|
|
57
|
+
# comment line
|
|
58
|
+
2, 3, {'weight':3.0, 'color':'red'}
|
|
59
|
+
"""
|
|
60
|
+
)
|
|
61
|
+
|
|
62
|
+
|
|
63
|
+
_expected_edges_weights = [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})]
|
|
64
|
+
_expected_edges_multiattr = [
|
|
65
|
+
(1, 2, {"weight": 2.0, "color": "green"}),
|
|
66
|
+
(2, 3, {"weight": 3.0, "color": "red"}),
|
|
67
|
+
]
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
@pytest.mark.parametrize(
|
|
71
|
+
("data", "extra_kwargs"),
|
|
72
|
+
(
|
|
73
|
+
(edges_no_data, {}),
|
|
74
|
+
(edges_with_values, {}),
|
|
75
|
+
(edges_with_weight, {}),
|
|
76
|
+
(edges_with_multiple_attrs, {}),
|
|
77
|
+
(edges_with_multiple_attrs_csv, {"delimiter": ","}),
|
|
78
|
+
),
|
|
79
|
+
)
|
|
80
|
+
def test_read_edgelist_no_data(data, extra_kwargs):
|
|
81
|
+
bytesIO = io.BytesIO(data.encode("utf-8"))
|
|
82
|
+
G = nx.read_edgelist(bytesIO, nodetype=int, data=False, **extra_kwargs)
|
|
83
|
+
assert edges_equal(G.edges(), [(1, 2), (2, 3)])
|
|
84
|
+
|
|
85
|
+
|
|
86
|
+
def test_read_weighted_edgelist():
|
|
87
|
+
bytesIO = io.BytesIO(edges_with_values.encode("utf-8"))
|
|
88
|
+
G = nx.read_weighted_edgelist(bytesIO, nodetype=int)
|
|
89
|
+
assert edges_equal(G.edges(data=True), _expected_edges_weights)
|
|
90
|
+
|
|
91
|
+
|
|
92
|
+
@pytest.mark.parametrize(
|
|
93
|
+
("data", "extra_kwargs", "expected"),
|
|
94
|
+
(
|
|
95
|
+
(edges_with_weight, {}, _expected_edges_weights),
|
|
96
|
+
(edges_with_multiple_attrs, {}, _expected_edges_multiattr),
|
|
97
|
+
(
|
|
98
|
+
edges_with_multiple_attrs_csv,
|
|
99
|
+
{"delimiter": ","},
|
|
100
|
+
_expected_edges_multiattr,
|
|
101
|
+
),
|
|
102
|
+
),
|
|
103
|
+
)
|
|
104
|
+
def test_read_edgelist_with_data(data, extra_kwargs, expected):
|
|
105
|
+
bytesIO = io.BytesIO(data.encode("utf-8"))
|
|
106
|
+
G = nx.read_edgelist(bytesIO, nodetype=int, **extra_kwargs)
|
|
107
|
+
assert edges_equal(G.edges(data=True), expected)
|
|
108
|
+
|
|
109
|
+
|
|
110
|
+
@pytest.fixture
|
|
111
|
+
def example_graph():
|
|
112
|
+
G = nx.Graph()
|
|
113
|
+
G.add_weighted_edges_from([(1, 2, 3.0), (2, 3, 27.0), (3, 4, 3.0)])
|
|
114
|
+
return G
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
def test_parse_edgelist_no_data(example_graph):
|
|
118
|
+
G = example_graph
|
|
119
|
+
H = nx.parse_edgelist(["1 2", "2 3", "3 4"], nodetype=int)
|
|
120
|
+
assert nodes_equal(G.nodes, H.nodes)
|
|
121
|
+
assert edges_equal(G.edges, H.edges)
|
|
122
|
+
|
|
123
|
+
|
|
124
|
+
def test_parse_edgelist_with_data_dict(example_graph):
|
|
125
|
+
G = example_graph
|
|
126
|
+
H = nx.parse_edgelist(
|
|
127
|
+
["1 2 {'weight': 3}", "2 3 {'weight': 27}", "3 4 {'weight': 3.0}"], nodetype=int
|
|
128
|
+
)
|
|
129
|
+
assert nodes_equal(G.nodes, H.nodes)
|
|
130
|
+
assert edges_equal(G.edges(data=True), H.edges(data=True))
|
|
131
|
+
|
|
132
|
+
|
|
133
|
+
def test_parse_edgelist_with_data_list(example_graph):
|
|
134
|
+
G = example_graph
|
|
135
|
+
H = nx.parse_edgelist(
|
|
136
|
+
["1 2 3", "2 3 27", "3 4 3.0"], nodetype=int, data=(("weight", float),)
|
|
137
|
+
)
|
|
138
|
+
assert nodes_equal(G.nodes, H.nodes)
|
|
139
|
+
assert edges_equal(G.edges(data=True), H.edges(data=True))
|
|
140
|
+
|
|
141
|
+
|
|
142
|
+
def test_parse_edgelist():
|
|
143
|
+
# ignore lines with less than 2 nodes
|
|
144
|
+
lines = ["1;2", "2 3", "3 4"]
|
|
145
|
+
G = nx.parse_edgelist(lines, nodetype=int)
|
|
146
|
+
assert list(G.edges()) == [(2, 3), (3, 4)]
|
|
147
|
+
# unknown nodetype
|
|
148
|
+
with pytest.raises(TypeError, match="Failed to convert nodes"):
|
|
149
|
+
lines = ["1 2", "2 3", "3 4"]
|
|
150
|
+
nx.parse_edgelist(lines, nodetype="nope")
|
|
151
|
+
# lines have invalid edge format
|
|
152
|
+
with pytest.raises(TypeError, match="Failed to convert edge data"):
|
|
153
|
+
lines = ["1 2 3", "2 3", "3 4"]
|
|
154
|
+
nx.parse_edgelist(lines, nodetype=int)
|
|
155
|
+
# edge data and data_keys not the same length
|
|
156
|
+
with pytest.raises(IndexError, match="not the same length"):
|
|
157
|
+
lines = ["1 2 3", "2 3 27", "3 4 3.0"]
|
|
158
|
+
nx.parse_edgelist(
|
|
159
|
+
lines, nodetype=int, data=(("weight", float), ("capacity", int))
|
|
160
|
+
)
|
|
161
|
+
# edge data can't be converted to edge type
|
|
162
|
+
with pytest.raises(TypeError, match="Failed to convert"):
|
|
163
|
+
lines = ["1 2 't1'", "2 3 't3'", "3 4 't3'"]
|
|
164
|
+
nx.parse_edgelist(lines, nodetype=int, data=(("weight", float),))
|
|
165
|
+
|
|
166
|
+
|
|
167
|
+
def test_comments_None():
|
|
168
|
+
edgelist = ["node#1 node#2", "node#2 node#3"]
|
|
169
|
+
# comments=None supported to ignore all comment characters
|
|
170
|
+
G = nx.parse_edgelist(edgelist, comments=None)
|
|
171
|
+
H = nx.Graph([e.split(" ") for e in edgelist])
|
|
172
|
+
assert edges_equal(G.edges, H.edges)
|
|
173
|
+
|
|
174
|
+
|
|
175
|
+
class TestEdgelist:
|
|
176
|
+
@classmethod
|
|
177
|
+
def setup_class(cls):
|
|
178
|
+
cls.G = nx.Graph(name="test")
|
|
179
|
+
e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
|
|
180
|
+
cls.G.add_edges_from(e)
|
|
181
|
+
cls.G.add_node("g")
|
|
182
|
+
cls.DG = nx.DiGraph(cls.G)
|
|
183
|
+
cls.XG = nx.MultiGraph()
|
|
184
|
+
cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
|
|
185
|
+
cls.XDG = nx.MultiDiGraph(cls.XG)
|
|
186
|
+
|
|
187
|
+
def test_write_edgelist_1(self):
|
|
188
|
+
fh = io.BytesIO()
|
|
189
|
+
G = nx.Graph()
|
|
190
|
+
G.add_edges_from([(1, 2), (2, 3)])
|
|
191
|
+
nx.write_edgelist(G, fh, data=False)
|
|
192
|
+
fh.seek(0)
|
|
193
|
+
assert fh.read() == b"1 2\n2 3\n"
|
|
194
|
+
|
|
195
|
+
def test_write_edgelist_2(self):
|
|
196
|
+
fh = io.BytesIO()
|
|
197
|
+
G = nx.Graph()
|
|
198
|
+
G.add_edges_from([(1, 2), (2, 3)])
|
|
199
|
+
nx.write_edgelist(G, fh, data=True)
|
|
200
|
+
fh.seek(0)
|
|
201
|
+
assert fh.read() == b"1 2 {}\n2 3 {}\n"
|
|
202
|
+
|
|
203
|
+
def test_write_edgelist_3(self):
|
|
204
|
+
fh = io.BytesIO()
|
|
205
|
+
G = nx.Graph()
|
|
206
|
+
G.add_edge(1, 2, weight=2.0)
|
|
207
|
+
G.add_edge(2, 3, weight=3.0)
|
|
208
|
+
nx.write_edgelist(G, fh, data=True)
|
|
209
|
+
fh.seek(0)
|
|
210
|
+
assert fh.read() == b"1 2 {'weight': 2.0}\n2 3 {'weight': 3.0}\n"
|
|
211
|
+
|
|
212
|
+
def test_write_edgelist_4(self):
|
|
213
|
+
fh = io.BytesIO()
|
|
214
|
+
G = nx.Graph()
|
|
215
|
+
G.add_edge(1, 2, weight=2.0)
|
|
216
|
+
G.add_edge(2, 3, weight=3.0)
|
|
217
|
+
nx.write_edgelist(G, fh, data=[("weight")])
|
|
218
|
+
fh.seek(0)
|
|
219
|
+
assert fh.read() == b"1 2 2.0\n2 3 3.0\n"
|
|
220
|
+
|
|
221
|
+
def test_unicode(self, tmp_path):
|
|
222
|
+
G = nx.Graph()
|
|
223
|
+
name1 = chr(2344) + chr(123) + chr(6543)
|
|
224
|
+
name2 = chr(5543) + chr(1543) + chr(324)
|
|
225
|
+
G.add_edge(name1, "Radiohead", **{name2: 3})
|
|
226
|
+
fname = tmp_path / "el.txt"
|
|
227
|
+
nx.write_edgelist(G, fname)
|
|
228
|
+
H = nx.read_edgelist(fname)
|
|
229
|
+
assert graphs_equal(G, H)
|
|
230
|
+
|
|
231
|
+
def test_latin1_issue(self, tmp_path):
|
|
232
|
+
G = nx.Graph()
|
|
233
|
+
name1 = chr(2344) + chr(123) + chr(6543)
|
|
234
|
+
name2 = chr(5543) + chr(1543) + chr(324)
|
|
235
|
+
G.add_edge(name1, "Radiohead", **{name2: 3})
|
|
236
|
+
fname = tmp_path / "el.txt"
|
|
237
|
+
with pytest.raises(UnicodeEncodeError):
|
|
238
|
+
nx.write_edgelist(G, fname, encoding="latin-1")
|
|
239
|
+
|
|
240
|
+
def test_latin1(self, tmp_path):
|
|
241
|
+
G = nx.Graph()
|
|
242
|
+
name1 = "Bj" + chr(246) + "rk"
|
|
243
|
+
name2 = chr(220) + "ber"
|
|
244
|
+
G.add_edge(name1, "Radiohead", **{name2: 3})
|
|
245
|
+
fname = tmp_path / "el.txt"
|
|
246
|
+
|
|
247
|
+
nx.write_edgelist(G, fname, encoding="latin-1")
|
|
248
|
+
H = nx.read_edgelist(fname, encoding="latin-1")
|
|
249
|
+
assert graphs_equal(G, H)
|
|
250
|
+
|
|
251
|
+
def test_edgelist_graph(self, tmp_path):
|
|
252
|
+
G = self.G
|
|
253
|
+
fname = tmp_path / "el.txt"
|
|
254
|
+
nx.write_edgelist(G, fname)
|
|
255
|
+
H = nx.read_edgelist(fname)
|
|
256
|
+
H2 = nx.read_edgelist(fname)
|
|
257
|
+
assert H is not H2 # they should be different graphs
|
|
258
|
+
G.remove_node("g") # isolated nodes are not written in edgelist
|
|
259
|
+
assert nodes_equal(list(H), list(G))
|
|
260
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
261
|
+
|
|
262
|
+
def test_edgelist_digraph(self, tmp_path):
|
|
263
|
+
G = self.DG
|
|
264
|
+
fname = tmp_path / "el.txt"
|
|
265
|
+
nx.write_edgelist(G, fname)
|
|
266
|
+
H = nx.read_edgelist(fname, create_using=nx.DiGraph())
|
|
267
|
+
H2 = nx.read_edgelist(fname, create_using=nx.DiGraph())
|
|
268
|
+
assert H is not H2 # they should be different graphs
|
|
269
|
+
G.remove_node("g") # isolated nodes are not written in edgelist
|
|
270
|
+
assert nodes_equal(list(H), list(G))
|
|
271
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
272
|
+
|
|
273
|
+
def test_edgelist_integers(self, tmp_path):
|
|
274
|
+
G = nx.convert_node_labels_to_integers(self.G)
|
|
275
|
+
fname = tmp_path / "el.txt"
|
|
276
|
+
nx.write_edgelist(G, fname)
|
|
277
|
+
H = nx.read_edgelist(fname, nodetype=int)
|
|
278
|
+
# isolated nodes are not written in edgelist
|
|
279
|
+
G.remove_nodes_from(list(nx.isolates(G)))
|
|
280
|
+
assert nodes_equal(list(H), list(G))
|
|
281
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
282
|
+
|
|
283
|
+
def test_edgelist_multigraph(self, tmp_path):
|
|
284
|
+
G = self.XG
|
|
285
|
+
fname = tmp_path / "el.txt"
|
|
286
|
+
nx.write_edgelist(G, fname)
|
|
287
|
+
H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph())
|
|
288
|
+
H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph())
|
|
289
|
+
assert H is not H2 # they should be different graphs
|
|
290
|
+
assert nodes_equal(list(H), list(G))
|
|
291
|
+
assert edges_equal(list(H.edges()), list(G.edges()))
|
|
292
|
+
|
|
293
|
+
def test_edgelist_multidigraph(self, tmp_path):
|
|
294
|
+
G = self.XDG
|
|
295
|
+
fname = tmp_path / "el.txt"
|
|
296
|
+
nx.write_edgelist(G, fname)
|
|
297
|
+
H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph())
|
|
298
|
+
H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph())
|
|
299
|
+
assert H is not H2 # they should be different graphs
|
|
300
|
+
assert nodes_equal(list(H), list(G))
|
|
301
|
+
assert edges_equal(list(H.edges()), list(G.edges()), directed=True)
|
|
302
|
+
|
|
303
|
+
|
|
304
|
+
def test_edgelist_consistent_strip_handling():
|
|
305
|
+
"""See gh-7462
|
|
306
|
+
|
|
307
|
+
Input when printed looks like::
|
|
308
|
+
|
|
309
|
+
1 2 3
|
|
310
|
+
2 3
|
|
311
|
+
3 4 3.0
|
|
312
|
+
|
|
313
|
+
Note the trailing \\t after the `3` in the second row, indicating an empty
|
|
314
|
+
data value.
|
|
315
|
+
"""
|
|
316
|
+
s = io.StringIO("1\t2\t3\n2\t3\t\n3\t4\t3.0")
|
|
317
|
+
G = nx.parse_edgelist(s, delimiter="\t", nodetype=int, data=[("value", str)])
|
|
318
|
+
assert sorted(G.edges(data="value")) == [(1, 2, "3"), (2, 3, ""), (3, 4, "3.0")]
|