okstra 0.108.0 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +356 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +662 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +425 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +573 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +475 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +481 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +194 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +435 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +483 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +1306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +336 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +1262 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +352 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +308 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +719 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +490 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +202 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +1655 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +3118 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +1102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +2 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +337 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +498 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +213 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +687 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +1148 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +738 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +544 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +324 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +468 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +633 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +328 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +451 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +491 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +464 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +1463 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +98 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +239 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +716 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +254 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +511 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +983 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +625 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +2542 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +2107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +966 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +404 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +296 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +374 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +564 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +23 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +154 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +109 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +136 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +129 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +678 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +266 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +984 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +835 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +831 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +299 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +58 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +314 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +872 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +46 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +24 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +615 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +459 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +15 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +60 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +37 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +1158 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +803 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +191 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +642 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +431 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +161 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +54 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +981 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +90 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +576 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +529 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +185 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +182 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +25 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +203 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +307 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgebfs.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgedfs.py +131 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/branchings.py +1042 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/coding.py +413 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/decomposition.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/distance_measures.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/mst.py +1281 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/operations.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/recognition.py +273 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_branchings.py +624 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_coding.py +114 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_decomposition.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_distance_measures.py +99 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_mst.py +934 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_operations.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_recognition.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/triads.py +500 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/vitality.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/voronoi.py +86 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/walks.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/wiener.py +278 -0
- package/runtime/python/okstra_vendor/networkx/classes/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/classes/coreviews.py +435 -0
- package/runtime/python/okstra_vendor/networkx/classes/digraph.py +1363 -0
- package/runtime/python/okstra_vendor/networkx/classes/filters.py +95 -0
- package/runtime/python/okstra_vendor/networkx/classes/function.py +1549 -0
- package/runtime/python/okstra_vendor/networkx/classes/graph.py +2082 -0
- package/runtime/python/okstra_vendor/networkx/classes/graphviews.py +269 -0
- package/runtime/python/okstra_vendor/networkx/classes/multidigraph.py +977 -0
- package/runtime/python/okstra_vendor/networkx/classes/multigraph.py +1294 -0
- package/runtime/python/okstra_vendor/networkx/classes/reportviews.py +1447 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/dispatch_interface.py +192 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/historical_tests.py +476 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_coreviews.py +362 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph.py +331 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph_historical.py +110 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_filters.py +177 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_function.py +1045 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph.py +950 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph_historical.py +12 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graphviews.py +349 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multidigraph.py +459 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multigraph.py +528 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_reportviews.py +1421 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_special.py +131 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_subgraphviews.py +371 -0
- package/runtime/python/okstra_vendor/networkx/conftest.py +261 -0
- package/runtime/python/okstra_vendor/networkx/convert.py +502 -0
- package/runtime/python/okstra_vendor/networkx/convert_matrix.py +1314 -0
- package/runtime/python/okstra_vendor/networkx/drawing/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/drawing/layout.py +2036 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_agraph.py +470 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_latex.py +570 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pydot.py +361 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pylab.py +2978 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_complex.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_empty_graph.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_labels_and_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_shortest_path.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_agraph.py +237 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_image_comparison_pylab_mpl.py +229 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_latex.py +285 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_layout.py +631 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pydot.py +146 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pylab.py +1582 -0
- package/runtime/python/okstra_vendor/networkx/exception.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/__init__.py +34 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.dat.gz +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.py +227 -0
- package/runtime/python/okstra_vendor/networkx/generators/classic.py +1091 -0
- package/runtime/python/okstra_vendor/networkx/generators/cographs.py +68 -0
- package/runtime/python/okstra_vendor/networkx/generators/community.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/degree_seq.py +886 -0
- package/runtime/python/okstra_vendor/networkx/generators/directed.py +572 -0
- package/runtime/python/okstra_vendor/networkx/generators/duplication.py +174 -0
- package/runtime/python/okstra_vendor/networkx/generators/ego.py +66 -0
- package/runtime/python/okstra_vendor/networkx/generators/expanders.py +499 -0
- package/runtime/python/okstra_vendor/networkx/generators/geometric.py +1037 -0
- package/runtime/python/okstra_vendor/networkx/generators/harary_graph.py +163 -0
- package/runtime/python/okstra_vendor/networkx/generators/internet_as_graphs.py +443 -0
- package/runtime/python/okstra_vendor/networkx/generators/intersection.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/interval_graph.py +70 -0
- package/runtime/python/okstra_vendor/networkx/generators/joint_degree_seq.py +664 -0
- package/runtime/python/okstra_vendor/networkx/generators/lattice.py +405 -0
- package/runtime/python/okstra_vendor/networkx/generators/line.py +501 -0
- package/runtime/python/okstra_vendor/networkx/generators/mycielski.py +110 -0
- package/runtime/python/okstra_vendor/networkx/generators/nonisomorphic_trees.py +259 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_clustered.py +117 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_graphs.py +1416 -0
- package/runtime/python/okstra_vendor/networkx/generators/small.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/social.py +554 -0
- package/runtime/python/okstra_vendor/networkx/generators/spectral_graph_forge.py +120 -0
- package/runtime/python/okstra_vendor/networkx/generators/stochastic.py +54 -0
- package/runtime/python/okstra_vendor/networkx/generators/sudoku.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_atlas.py +75 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_classic.py +642 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_cographs.py +20 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_community.py +362 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_degree_seq.py +224 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_directed.py +189 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_duplication.py +103 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_ego.py +39 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_expanders.py +182 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_geometric.py +488 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_harary_graph.py +133 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_internet_as_graphs.py +221 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_intersection.py +28 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +144 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_joint_degree_seq.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +72 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +195 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +15 -0
- package/runtime/python/okstra_vendor/networkx/generators/time_series.py +74 -0
- package/runtime/python/okstra_vendor/networkx/generators/trees.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/triads.py +94 -0
- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
- package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +512 -0
- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +879 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +427 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +1053 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +156 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +48 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +137 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +108 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +393 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +113 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +286 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +379 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +354 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +318 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +612 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +744 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +181 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +1531 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +30 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +63 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +128 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +166 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +1742 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/text.py +851 -0
- package/runtime/python/okstra_vendor/networkx/relabel.py +285 -0
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +248 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +321 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +531 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +281 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +40 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +11 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +96 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/__init__.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/backends.py +2171 -0
- package/runtime/python/okstra_vendor/networkx/utils/configs.py +396 -0
- package/runtime/python/okstra_vendor/networkx/utils/decorators.py +1233 -0
- package/runtime/python/okstra_vendor/networkx/utils/heaps.py +338 -0
- package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +297 -0
- package/runtime/python/okstra_vendor/networkx/utils/misc.py +703 -0
- package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +198 -0
- package/runtime/python/okstra_vendor/networkx/utils/rcm.py +159 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +11 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +225 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +263 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +510 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +131 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +268 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +393 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +53 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +63 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +55 -0
- package/runtime/python/okstra_vendor/networkx/utils/union_find.py +106 -0
- package/runtime/skills/okstra-graphify/SKILL.md +161 -0
- package/runtime/skills/okstra-inspect/SKILL.md +17 -9
- package/runtime/templates/reports/settings.template.json +4 -0
- package/src/cli-registry.mjs +7 -0
- package/src/commands/graphify.mjs +32 -0
- package/src/commands/lifecycle/doctor.mjs +9 -0
- package/src/lib/skill-catalog.mjs +1 -0
|
@@ -0,0 +1,105 @@
|
|
|
1
|
+
"""Provides a function for computing the extendability of a graph which is
|
|
2
|
+
undirected, simple, connected and bipartite and contains at least one perfect matching."""
|
|
3
|
+
|
|
4
|
+
import networkx as nx
|
|
5
|
+
from networkx.utils import not_implemented_for
|
|
6
|
+
|
|
7
|
+
__all__ = ["maximal_extendability"]
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
@not_implemented_for("directed")
|
|
11
|
+
@not_implemented_for("multigraph")
|
|
12
|
+
@nx._dispatchable
|
|
13
|
+
def maximal_extendability(G):
|
|
14
|
+
"""Computes the extendability of a graph.
|
|
15
|
+
|
|
16
|
+
The extendability of a graph is defined as the maximum $k$ for which `G`
|
|
17
|
+
is $k$-extendable. Graph `G` is $k$-extendable if and only if `G` has a
|
|
18
|
+
perfect matching and every set of $k$ independent edges can be extended
|
|
19
|
+
to a perfect matching in `G`.
|
|
20
|
+
|
|
21
|
+
Parameters
|
|
22
|
+
----------
|
|
23
|
+
G : NetworkX Graph
|
|
24
|
+
A fully-connected bipartite graph without self-loops
|
|
25
|
+
|
|
26
|
+
Returns
|
|
27
|
+
-------
|
|
28
|
+
extendability : int
|
|
29
|
+
|
|
30
|
+
Raises
|
|
31
|
+
------
|
|
32
|
+
NetworkXError
|
|
33
|
+
If the graph `G` is disconnected.
|
|
34
|
+
If the graph `G` is not bipartite.
|
|
35
|
+
If the graph `G` does not contain a perfect matching.
|
|
36
|
+
If the residual graph of `G` is not strongly connected.
|
|
37
|
+
|
|
38
|
+
Notes
|
|
39
|
+
-----
|
|
40
|
+
Definition:
|
|
41
|
+
Let `G` be a simple, connected, undirected and bipartite graph with a perfect
|
|
42
|
+
matching M and bipartition (U,V). The residual graph of `G`, denoted by $G_M$,
|
|
43
|
+
is the graph obtained from G by directing the edges of M from V to U and the
|
|
44
|
+
edges that do not belong to M from U to V.
|
|
45
|
+
|
|
46
|
+
Lemma [1]_ :
|
|
47
|
+
Let M be a perfect matching of `G`. `G` is $k$-extendable if and only if its residual
|
|
48
|
+
graph $G_M$ is strongly connected and there are $k$ vertex-disjoint directed
|
|
49
|
+
paths between every vertex of U and every vertex of V.
|
|
50
|
+
|
|
51
|
+
Assuming that input graph `G` is undirected, simple, connected, bipartite and contains
|
|
52
|
+
a perfect matching M, this function constructs the residual graph $G_M$ of G and
|
|
53
|
+
returns the minimum value among the maximum vertex-disjoint directed paths between
|
|
54
|
+
every vertex of U and every vertex of V in $G_M$. By combining the definitions
|
|
55
|
+
and the lemma, this value represents the extendability of the graph `G`.
|
|
56
|
+
|
|
57
|
+
Time complexity O($n^3$ $m^2$)) where $n$ is the number of vertices
|
|
58
|
+
and $m$ is the number of edges.
|
|
59
|
+
|
|
60
|
+
References
|
|
61
|
+
----------
|
|
62
|
+
.. [1] "A polynomial algorithm for the extendability problem in bipartite graphs",
|
|
63
|
+
J. Lakhal, L. Litzler, Information Processing Letters, 1998.
|
|
64
|
+
.. [2] "On n-extendible graphs", M. D. Plummer, Discrete Mathematics, 31:201–210, 1980
|
|
65
|
+
https://doi.org/10.1016/0012-365X(80)90037-0
|
|
66
|
+
|
|
67
|
+
"""
|
|
68
|
+
if not nx.is_connected(G):
|
|
69
|
+
raise nx.NetworkXError("Graph G is not connected")
|
|
70
|
+
|
|
71
|
+
if not nx.bipartite.is_bipartite(G):
|
|
72
|
+
raise nx.NetworkXError("Graph G is not bipartite")
|
|
73
|
+
|
|
74
|
+
U, V = nx.bipartite.sets(G)
|
|
75
|
+
|
|
76
|
+
maximum_matching = nx.bipartite.hopcroft_karp_matching(G)
|
|
77
|
+
|
|
78
|
+
if not nx.is_perfect_matching(G, maximum_matching):
|
|
79
|
+
raise nx.NetworkXError("Graph G does not contain a perfect matching")
|
|
80
|
+
|
|
81
|
+
# list of edges in perfect matching, directed from V to U
|
|
82
|
+
pm = [(node, maximum_matching[node]) for node in V & maximum_matching.keys()]
|
|
83
|
+
|
|
84
|
+
# Direct all the edges of G, from V to U if in matching, else from U to V
|
|
85
|
+
directed_edges = [
|
|
86
|
+
(x, y) if (x in V and (x, y) in pm) or (x in U and (y, x) not in pm) else (y, x)
|
|
87
|
+
for x, y in G.edges
|
|
88
|
+
]
|
|
89
|
+
|
|
90
|
+
# Construct the residual graph of G
|
|
91
|
+
residual_G = nx.DiGraph()
|
|
92
|
+
residual_G.add_nodes_from(G)
|
|
93
|
+
residual_G.add_edges_from(directed_edges)
|
|
94
|
+
|
|
95
|
+
if not nx.is_strongly_connected(residual_G):
|
|
96
|
+
raise nx.NetworkXError("The residual graph of G is not strongly connected")
|
|
97
|
+
|
|
98
|
+
# For node-pairs between V & U, keep min of max number of node-disjoint paths
|
|
99
|
+
# Variable $k$ stands for the extendability of graph G
|
|
100
|
+
k = float("inf")
|
|
101
|
+
for u in U:
|
|
102
|
+
for v in V:
|
|
103
|
+
num_paths = sum(1 for _ in nx.node_disjoint_paths(residual_G, u, v))
|
|
104
|
+
k = k if k < num_paths else num_paths
|
|
105
|
+
return k
|
|
@@ -0,0 +1,603 @@
|
|
|
1
|
+
"""
|
|
2
|
+
Generators and functions for bipartite graphs.
|
|
3
|
+
"""
|
|
4
|
+
|
|
5
|
+
import math
|
|
6
|
+
import numbers
|
|
7
|
+
from functools import reduce
|
|
8
|
+
|
|
9
|
+
import networkx as nx
|
|
10
|
+
from networkx.utils import nodes_or_number, py_random_state
|
|
11
|
+
|
|
12
|
+
__all__ = [
|
|
13
|
+
"configuration_model",
|
|
14
|
+
"havel_hakimi_graph",
|
|
15
|
+
"reverse_havel_hakimi_graph",
|
|
16
|
+
"alternating_havel_hakimi_graph",
|
|
17
|
+
"preferential_attachment_graph",
|
|
18
|
+
"random_graph",
|
|
19
|
+
"gnmk_random_graph",
|
|
20
|
+
"complete_bipartite_graph",
|
|
21
|
+
]
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
25
|
+
@nodes_or_number([0, 1])
|
|
26
|
+
def complete_bipartite_graph(n1, n2, create_using=None):
|
|
27
|
+
"""Returns the complete bipartite graph `K_{n_1,n_2}`.
|
|
28
|
+
|
|
29
|
+
The graph is composed of two partitions with nodes 0 to (n1 - 1)
|
|
30
|
+
in the first and nodes n1 to (n1 + n2 - 1) in the second.
|
|
31
|
+
Each node in the first is connected to each node in the second.
|
|
32
|
+
|
|
33
|
+
Parameters
|
|
34
|
+
----------
|
|
35
|
+
n1, n2 : integer or iterable container of nodes
|
|
36
|
+
If integers, nodes are from `range(n1)` and `range(n1, n1 + n2)`.
|
|
37
|
+
If a container, the elements are the nodes.
|
|
38
|
+
create_using : NetworkX graph instance, (default: nx.Graph)
|
|
39
|
+
Return graph of this type.
|
|
40
|
+
|
|
41
|
+
Notes
|
|
42
|
+
-----
|
|
43
|
+
Nodes are the integers 0 to `n1 + n2 - 1` unless either n1 or n2 are
|
|
44
|
+
containers of nodes. If only one of n1 or n2 are integers, that
|
|
45
|
+
integer is replaced by `range` of that integer.
|
|
46
|
+
|
|
47
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
48
|
+
to indicate which bipartite set the node belongs to.
|
|
49
|
+
|
|
50
|
+
This function is not imported in the main namespace.
|
|
51
|
+
To use it use nx.bipartite.complete_bipartite_graph
|
|
52
|
+
"""
|
|
53
|
+
G = nx.empty_graph(0, create_using)
|
|
54
|
+
if G.is_directed():
|
|
55
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
56
|
+
|
|
57
|
+
n1, top = n1
|
|
58
|
+
n2, bottom = n2
|
|
59
|
+
if isinstance(n1, numbers.Integral) and isinstance(n2, numbers.Integral):
|
|
60
|
+
bottom = [n1 + i for i in bottom]
|
|
61
|
+
G.add_nodes_from(top, bipartite=0)
|
|
62
|
+
G.add_nodes_from(bottom, bipartite=1)
|
|
63
|
+
if len(G) != len(top) + len(bottom):
|
|
64
|
+
raise nx.NetworkXError("Inputs n1 and n2 must contain distinct nodes")
|
|
65
|
+
G.add_edges_from((u, v) for u in top for v in bottom)
|
|
66
|
+
G.graph["name"] = f"complete_bipartite_graph({len(top)}, {len(bottom)})"
|
|
67
|
+
return G
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
@py_random_state(3)
|
|
71
|
+
@nx._dispatchable(name="bipartite_configuration_model", graphs=None, returns_graph=True)
|
|
72
|
+
def configuration_model(aseq, bseq, create_using=None, seed=None):
|
|
73
|
+
"""Returns a random bipartite graph from two given degree sequences.
|
|
74
|
+
|
|
75
|
+
Parameters
|
|
76
|
+
----------
|
|
77
|
+
aseq : list
|
|
78
|
+
Degree sequence for node set A.
|
|
79
|
+
bseq : list
|
|
80
|
+
Degree sequence for node set B.
|
|
81
|
+
create_using : NetworkX graph instance, optional
|
|
82
|
+
Return graph of this type.
|
|
83
|
+
seed : integer, random_state, or None (default)
|
|
84
|
+
Indicator of random number generation state.
|
|
85
|
+
See :ref:`Randomness<randomness>`.
|
|
86
|
+
|
|
87
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
88
|
+
(len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
|
|
89
|
+
Nodes from set A are connected to nodes in set B by choosing
|
|
90
|
+
randomly from the possible free stubs, one in A and one in B.
|
|
91
|
+
|
|
92
|
+
Notes
|
|
93
|
+
-----
|
|
94
|
+
The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
|
|
95
|
+
If no graph type is specified use MultiGraph with parallel edges.
|
|
96
|
+
If you want a graph with no parallel edges use create_using=Graph()
|
|
97
|
+
but then the resulting degree sequences might not be exact.
|
|
98
|
+
|
|
99
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
100
|
+
to indicate which bipartite set the node belongs to.
|
|
101
|
+
|
|
102
|
+
This function is not imported in the main namespace.
|
|
103
|
+
To use it use nx.bipartite.configuration_model
|
|
104
|
+
"""
|
|
105
|
+
G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
|
|
106
|
+
if G.is_directed():
|
|
107
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
108
|
+
|
|
109
|
+
# length and sum of each sequence
|
|
110
|
+
lena = len(aseq)
|
|
111
|
+
lenb = len(bseq)
|
|
112
|
+
suma = sum(aseq)
|
|
113
|
+
sumb = sum(bseq)
|
|
114
|
+
|
|
115
|
+
if not suma == sumb:
|
|
116
|
+
raise nx.NetworkXError(
|
|
117
|
+
f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
|
|
118
|
+
)
|
|
119
|
+
|
|
120
|
+
G = _add_nodes_with_bipartite_label(G, lena, lenb)
|
|
121
|
+
|
|
122
|
+
if len(aseq) == 0 or max(aseq) == 0:
|
|
123
|
+
return G # done if no edges
|
|
124
|
+
|
|
125
|
+
# build lists of degree-repeated vertex numbers
|
|
126
|
+
stubs = [[v] * aseq[v] for v in range(lena)]
|
|
127
|
+
astubs = [x for subseq in stubs for x in subseq]
|
|
128
|
+
|
|
129
|
+
stubs = [[v] * bseq[v - lena] for v in range(lena, lena + lenb)]
|
|
130
|
+
bstubs = [x for subseq in stubs for x in subseq]
|
|
131
|
+
|
|
132
|
+
# shuffle lists
|
|
133
|
+
seed.shuffle(astubs)
|
|
134
|
+
seed.shuffle(bstubs)
|
|
135
|
+
|
|
136
|
+
G.add_edges_from([astubs[i], bstubs[i]] for i in range(suma))
|
|
137
|
+
|
|
138
|
+
G.name = "bipartite_configuration_model"
|
|
139
|
+
return G
|
|
140
|
+
|
|
141
|
+
|
|
142
|
+
@nx._dispatchable(name="bipartite_havel_hakimi_graph", graphs=None, returns_graph=True)
|
|
143
|
+
def havel_hakimi_graph(aseq, bseq, create_using=None):
|
|
144
|
+
"""Returns a bipartite graph from two given degree sequences using a
|
|
145
|
+
Havel-Hakimi style construction.
|
|
146
|
+
|
|
147
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
148
|
+
(len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
|
|
149
|
+
Nodes from the set A are connected to nodes in the set B by
|
|
150
|
+
connecting the highest degree nodes in set A to the highest degree
|
|
151
|
+
nodes in set B until all stubs are connected.
|
|
152
|
+
|
|
153
|
+
Parameters
|
|
154
|
+
----------
|
|
155
|
+
aseq : list
|
|
156
|
+
Degree sequence for node set A.
|
|
157
|
+
bseq : list
|
|
158
|
+
Degree sequence for node set B.
|
|
159
|
+
create_using : NetworkX graph instance, optional
|
|
160
|
+
Return graph of this type.
|
|
161
|
+
|
|
162
|
+
Notes
|
|
163
|
+
-----
|
|
164
|
+
The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
|
|
165
|
+
If no graph type is specified use MultiGraph with parallel edges.
|
|
166
|
+
If you want a graph with no parallel edges use create_using=Graph()
|
|
167
|
+
but then the resulting degree sequences might not be exact.
|
|
168
|
+
|
|
169
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
170
|
+
to indicate which bipartite set the node belongs to.
|
|
171
|
+
|
|
172
|
+
This function is not imported in the main namespace.
|
|
173
|
+
To use it use nx.bipartite.havel_hakimi_graph
|
|
174
|
+
"""
|
|
175
|
+
G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
|
|
176
|
+
if G.is_directed():
|
|
177
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
178
|
+
|
|
179
|
+
# length of the each sequence
|
|
180
|
+
naseq = len(aseq)
|
|
181
|
+
nbseq = len(bseq)
|
|
182
|
+
|
|
183
|
+
suma = sum(aseq)
|
|
184
|
+
sumb = sum(bseq)
|
|
185
|
+
|
|
186
|
+
if not suma == sumb:
|
|
187
|
+
raise nx.NetworkXError(
|
|
188
|
+
f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
|
|
189
|
+
)
|
|
190
|
+
|
|
191
|
+
G = _add_nodes_with_bipartite_label(G, naseq, nbseq)
|
|
192
|
+
|
|
193
|
+
if len(aseq) == 0 or max(aseq) == 0:
|
|
194
|
+
return G # done if no edges
|
|
195
|
+
|
|
196
|
+
# build list of degree-repeated vertex numbers
|
|
197
|
+
astubs = [[aseq[v], v] for v in range(naseq)]
|
|
198
|
+
bstubs = [[bseq[v - naseq], v] for v in range(naseq, naseq + nbseq)]
|
|
199
|
+
astubs.sort()
|
|
200
|
+
while astubs:
|
|
201
|
+
(degree, u) = astubs.pop() # take of largest degree node in the a set
|
|
202
|
+
if degree == 0:
|
|
203
|
+
break # done, all are zero
|
|
204
|
+
# connect the source to largest degree nodes in the b set
|
|
205
|
+
bstubs.sort()
|
|
206
|
+
for target in bstubs[-degree:]:
|
|
207
|
+
v = target[1]
|
|
208
|
+
G.add_edge(u, v)
|
|
209
|
+
target[0] -= 1 # note this updates bstubs too.
|
|
210
|
+
if target[0] == 0:
|
|
211
|
+
bstubs.remove(target)
|
|
212
|
+
|
|
213
|
+
G.name = "bipartite_havel_hakimi_graph"
|
|
214
|
+
return G
|
|
215
|
+
|
|
216
|
+
|
|
217
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
218
|
+
def reverse_havel_hakimi_graph(aseq, bseq, create_using=None):
|
|
219
|
+
"""Returns a bipartite graph from two given degree sequences using a
|
|
220
|
+
Havel-Hakimi style construction.
|
|
221
|
+
|
|
222
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
223
|
+
(len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
|
|
224
|
+
Nodes from set A are connected to nodes in the set B by connecting
|
|
225
|
+
the highest degree nodes in set A to the lowest degree nodes in
|
|
226
|
+
set B until all stubs are connected.
|
|
227
|
+
|
|
228
|
+
Parameters
|
|
229
|
+
----------
|
|
230
|
+
aseq : list
|
|
231
|
+
Degree sequence for node set A.
|
|
232
|
+
bseq : list
|
|
233
|
+
Degree sequence for node set B.
|
|
234
|
+
create_using : NetworkX graph instance, optional
|
|
235
|
+
Return graph of this type.
|
|
236
|
+
|
|
237
|
+
Notes
|
|
238
|
+
-----
|
|
239
|
+
The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
|
|
240
|
+
If no graph type is specified use MultiGraph with parallel edges.
|
|
241
|
+
If you want a graph with no parallel edges use create_using=Graph()
|
|
242
|
+
but then the resulting degree sequences might not be exact.
|
|
243
|
+
|
|
244
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
245
|
+
to indicate which bipartite set the node belongs to.
|
|
246
|
+
|
|
247
|
+
This function is not imported in the main namespace.
|
|
248
|
+
To use it use nx.bipartite.reverse_havel_hakimi_graph
|
|
249
|
+
"""
|
|
250
|
+
G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
|
|
251
|
+
if G.is_directed():
|
|
252
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
253
|
+
|
|
254
|
+
# length of the each sequence
|
|
255
|
+
lena = len(aseq)
|
|
256
|
+
lenb = len(bseq)
|
|
257
|
+
suma = sum(aseq)
|
|
258
|
+
sumb = sum(bseq)
|
|
259
|
+
|
|
260
|
+
if not suma == sumb:
|
|
261
|
+
raise nx.NetworkXError(
|
|
262
|
+
f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
|
|
263
|
+
)
|
|
264
|
+
|
|
265
|
+
G = _add_nodes_with_bipartite_label(G, lena, lenb)
|
|
266
|
+
|
|
267
|
+
if len(aseq) == 0 or max(aseq) == 0:
|
|
268
|
+
return G # done if no edges
|
|
269
|
+
|
|
270
|
+
# build list of degree-repeated vertex numbers
|
|
271
|
+
astubs = [[aseq[v], v] for v in range(lena)]
|
|
272
|
+
bstubs = [[bseq[v - lena], v] for v in range(lena, lena + lenb)]
|
|
273
|
+
astubs.sort()
|
|
274
|
+
bstubs.sort()
|
|
275
|
+
while astubs:
|
|
276
|
+
(degree, u) = astubs.pop() # take of largest degree node in the a set
|
|
277
|
+
if degree == 0:
|
|
278
|
+
break # done, all are zero
|
|
279
|
+
# connect the source to the smallest degree nodes in the b set
|
|
280
|
+
for target in bstubs[0:degree]:
|
|
281
|
+
v = target[1]
|
|
282
|
+
G.add_edge(u, v)
|
|
283
|
+
target[0] -= 1 # note this updates bstubs too.
|
|
284
|
+
if target[0] == 0:
|
|
285
|
+
bstubs.remove(target)
|
|
286
|
+
|
|
287
|
+
G.name = "bipartite_reverse_havel_hakimi_graph"
|
|
288
|
+
return G
|
|
289
|
+
|
|
290
|
+
|
|
291
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
292
|
+
def alternating_havel_hakimi_graph(aseq, bseq, create_using=None):
|
|
293
|
+
"""Returns a bipartite graph from two given degree sequences using
|
|
294
|
+
an alternating Havel-Hakimi style construction.
|
|
295
|
+
|
|
296
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
297
|
+
(len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
|
|
298
|
+
Nodes from the set A are connected to nodes in the set B by
|
|
299
|
+
connecting the highest degree nodes in set A to alternatively the
|
|
300
|
+
highest and the lowest degree nodes in set B until all stubs are
|
|
301
|
+
connected.
|
|
302
|
+
|
|
303
|
+
Parameters
|
|
304
|
+
----------
|
|
305
|
+
aseq : list
|
|
306
|
+
Degree sequence for node set A.
|
|
307
|
+
bseq : list
|
|
308
|
+
Degree sequence for node set B.
|
|
309
|
+
create_using : NetworkX graph instance, optional
|
|
310
|
+
Return graph of this type.
|
|
311
|
+
|
|
312
|
+
Notes
|
|
313
|
+
-----
|
|
314
|
+
The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
|
|
315
|
+
If no graph type is specified use MultiGraph with parallel edges.
|
|
316
|
+
If you want a graph with no parallel edges use create_using=Graph()
|
|
317
|
+
but then the resulting degree sequences might not be exact.
|
|
318
|
+
|
|
319
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
320
|
+
to indicate which bipartite set the node belongs to.
|
|
321
|
+
|
|
322
|
+
This function is not imported in the main namespace.
|
|
323
|
+
To use it use nx.bipartite.alternating_havel_hakimi_graph
|
|
324
|
+
"""
|
|
325
|
+
G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
|
|
326
|
+
if G.is_directed():
|
|
327
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
328
|
+
|
|
329
|
+
# length of the each sequence
|
|
330
|
+
naseq = len(aseq)
|
|
331
|
+
nbseq = len(bseq)
|
|
332
|
+
suma = sum(aseq)
|
|
333
|
+
sumb = sum(bseq)
|
|
334
|
+
|
|
335
|
+
if not suma == sumb:
|
|
336
|
+
raise nx.NetworkXError(
|
|
337
|
+
f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
|
|
338
|
+
)
|
|
339
|
+
|
|
340
|
+
G = _add_nodes_with_bipartite_label(G, naseq, nbseq)
|
|
341
|
+
|
|
342
|
+
if len(aseq) == 0 or max(aseq) == 0:
|
|
343
|
+
return G # done if no edges
|
|
344
|
+
# build list of degree-repeated vertex numbers
|
|
345
|
+
astubs = [[aseq[v], v] for v in range(naseq)]
|
|
346
|
+
bstubs = [[bseq[v - naseq], v] for v in range(naseq, naseq + nbseq)]
|
|
347
|
+
while astubs:
|
|
348
|
+
astubs.sort()
|
|
349
|
+
(degree, u) = astubs.pop() # take of largest degree node in the a set
|
|
350
|
+
if degree == 0:
|
|
351
|
+
break # done, all are zero
|
|
352
|
+
bstubs.sort()
|
|
353
|
+
small = bstubs[0 : degree // 2] # add these low degree targets
|
|
354
|
+
large = bstubs[(-degree + degree // 2) :] # now high degree targets
|
|
355
|
+
stubs = [x for z in zip(large, small) for x in z] # combine, sorry
|
|
356
|
+
if len(stubs) < len(small) + len(large): # check for zip truncation
|
|
357
|
+
stubs.append(large.pop())
|
|
358
|
+
for target in stubs:
|
|
359
|
+
v = target[1]
|
|
360
|
+
G.add_edge(u, v)
|
|
361
|
+
target[0] -= 1 # note this updates bstubs too.
|
|
362
|
+
if target[0] == 0:
|
|
363
|
+
bstubs.remove(target)
|
|
364
|
+
|
|
365
|
+
G.name = "bipartite_alternating_havel_hakimi_graph"
|
|
366
|
+
return G
|
|
367
|
+
|
|
368
|
+
|
|
369
|
+
@py_random_state(3)
|
|
370
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
371
|
+
def preferential_attachment_graph(aseq, p, create_using=None, seed=None):
|
|
372
|
+
"""Create a bipartite graph with a preferential attachment model from
|
|
373
|
+
a given single degree sequence.
|
|
374
|
+
|
|
375
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
376
|
+
(len(aseq) - 1) and set B has nodes starting with node len(aseq).
|
|
377
|
+
The number of nodes in set B is random.
|
|
378
|
+
|
|
379
|
+
Parameters
|
|
380
|
+
----------
|
|
381
|
+
aseq : list
|
|
382
|
+
Degree sequence for node set A.
|
|
383
|
+
p : float
|
|
384
|
+
Probability that a new bottom node is added.
|
|
385
|
+
create_using : NetworkX graph instance, optional
|
|
386
|
+
Return graph of this type.
|
|
387
|
+
seed : integer, random_state, or None (default)
|
|
388
|
+
Indicator of random number generation state.
|
|
389
|
+
See :ref:`Randomness<randomness>`.
|
|
390
|
+
|
|
391
|
+
References
|
|
392
|
+
----------
|
|
393
|
+
.. [1] Guillaume, J.L. and Latapy, M.,
|
|
394
|
+
Bipartite graphs as models of complex networks.
|
|
395
|
+
Physica A: Statistical Mechanics and its Applications,
|
|
396
|
+
2006, 371(2), pp.795-813.
|
|
397
|
+
.. [2] Jean-Loup Guillaume and Matthieu Latapy,
|
|
398
|
+
Bipartite structure of all complex networks,
|
|
399
|
+
Inf. Process. Lett. 90, 2004, pg. 215-221
|
|
400
|
+
https://doi.org/10.1016/j.ipl.2004.03.007
|
|
401
|
+
|
|
402
|
+
Notes
|
|
403
|
+
-----
|
|
404
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
405
|
+
to indicate which bipartite set the node belongs to.
|
|
406
|
+
|
|
407
|
+
This function is not imported in the main namespace.
|
|
408
|
+
To use it use nx.bipartite.preferential_attachment_graph
|
|
409
|
+
"""
|
|
410
|
+
G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
|
|
411
|
+
if G.is_directed():
|
|
412
|
+
raise nx.NetworkXError("Directed Graph not supported")
|
|
413
|
+
|
|
414
|
+
if p > 1:
|
|
415
|
+
raise nx.NetworkXError(f"probability {p} > 1")
|
|
416
|
+
|
|
417
|
+
naseq = len(aseq)
|
|
418
|
+
G = _add_nodes_with_bipartite_label(G, naseq, 0)
|
|
419
|
+
vv = [[v] * aseq[v] for v in range(naseq)]
|
|
420
|
+
while vv:
|
|
421
|
+
while vv[0]:
|
|
422
|
+
source = vv[0][0]
|
|
423
|
+
vv[0].remove(source)
|
|
424
|
+
if seed.random() < p or len(G) == naseq:
|
|
425
|
+
target = len(G)
|
|
426
|
+
G.add_node(target, bipartite=1)
|
|
427
|
+
G.add_edge(source, target)
|
|
428
|
+
else:
|
|
429
|
+
bb = [[b] * G.degree(b) for b in range(naseq, len(G))]
|
|
430
|
+
# flatten the list of lists into a list.
|
|
431
|
+
bbstubs = reduce(lambda x, y: x + y, bb)
|
|
432
|
+
# choose preferentially a bottom node.
|
|
433
|
+
target = seed.choice(bbstubs)
|
|
434
|
+
G.add_node(target, bipartite=1)
|
|
435
|
+
G.add_edge(source, target)
|
|
436
|
+
vv.remove(vv[0])
|
|
437
|
+
G.name = "bipartite_preferential_attachment_model"
|
|
438
|
+
return G
|
|
439
|
+
|
|
440
|
+
|
|
441
|
+
@py_random_state(3)
|
|
442
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
443
|
+
def random_graph(n, m, p, seed=None, directed=False):
|
|
444
|
+
"""Returns a bipartite random graph.
|
|
445
|
+
|
|
446
|
+
This is a bipartite version of the binomial (Erdős-Rényi) graph.
|
|
447
|
+
The graph is composed of two partitions. Set A has nodes 0 to
|
|
448
|
+
(n - 1) and set B has nodes n to (n + m - 1).
|
|
449
|
+
|
|
450
|
+
Parameters
|
|
451
|
+
----------
|
|
452
|
+
n : int
|
|
453
|
+
The number of nodes in the first bipartite set.
|
|
454
|
+
m : int
|
|
455
|
+
The number of nodes in the second bipartite set.
|
|
456
|
+
p : float
|
|
457
|
+
Probability for edge creation.
|
|
458
|
+
seed : integer, random_state, or None (default)
|
|
459
|
+
Indicator of random number generation state.
|
|
460
|
+
See :ref:`Randomness<randomness>`.
|
|
461
|
+
directed : bool, optional (default=False)
|
|
462
|
+
If True return a directed graph
|
|
463
|
+
|
|
464
|
+
Notes
|
|
465
|
+
-----
|
|
466
|
+
The bipartite random graph algorithm chooses each of the n*m (undirected)
|
|
467
|
+
or 2*nm (directed) possible edges with probability p.
|
|
468
|
+
|
|
469
|
+
This algorithm is $O(n+m)$ where $m$ is the expected number of edges.
|
|
470
|
+
|
|
471
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
472
|
+
to indicate which bipartite set the node belongs to.
|
|
473
|
+
|
|
474
|
+
This function is not imported in the main namespace.
|
|
475
|
+
To use it use nx.bipartite.random_graph
|
|
476
|
+
|
|
477
|
+
See Also
|
|
478
|
+
--------
|
|
479
|
+
gnp_random_graph, configuration_model
|
|
480
|
+
|
|
481
|
+
References
|
|
482
|
+
----------
|
|
483
|
+
.. [1] Vladimir Batagelj and Ulrik Brandes,
|
|
484
|
+
"Efficient generation of large random networks",
|
|
485
|
+
Phys. Rev. E, 71, 036113, 2005.
|
|
486
|
+
"""
|
|
487
|
+
G = nx.Graph()
|
|
488
|
+
G = _add_nodes_with_bipartite_label(G, n, m)
|
|
489
|
+
if directed:
|
|
490
|
+
G = nx.DiGraph(G)
|
|
491
|
+
G.name = f"fast_gnp_random_graph({n},{m},{p})"
|
|
492
|
+
|
|
493
|
+
if p <= 0:
|
|
494
|
+
return G
|
|
495
|
+
if p >= 1:
|
|
496
|
+
return nx.complete_bipartite_graph(n, m)
|
|
497
|
+
|
|
498
|
+
lp = math.log(1.0 - p)
|
|
499
|
+
|
|
500
|
+
v = 0
|
|
501
|
+
w = -1
|
|
502
|
+
while v < n:
|
|
503
|
+
lr = math.log(1.0 - seed.random())
|
|
504
|
+
w = w + 1 + int(lr / lp)
|
|
505
|
+
while w >= m and v < n:
|
|
506
|
+
w = w - m
|
|
507
|
+
v = v + 1
|
|
508
|
+
if v < n:
|
|
509
|
+
G.add_edge(v, n + w)
|
|
510
|
+
|
|
511
|
+
if directed:
|
|
512
|
+
# use the same algorithm to
|
|
513
|
+
# add edges from the "m" to "n" set
|
|
514
|
+
v = 0
|
|
515
|
+
w = -1
|
|
516
|
+
while v < n:
|
|
517
|
+
lr = math.log(1.0 - seed.random())
|
|
518
|
+
w = w + 1 + int(lr / lp)
|
|
519
|
+
while w >= m and v < n:
|
|
520
|
+
w = w - m
|
|
521
|
+
v = v + 1
|
|
522
|
+
if v < n:
|
|
523
|
+
G.add_edge(n + w, v)
|
|
524
|
+
|
|
525
|
+
return G
|
|
526
|
+
|
|
527
|
+
|
|
528
|
+
@py_random_state(3)
|
|
529
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
530
|
+
def gnmk_random_graph(n, m, k, seed=None, directed=False):
|
|
531
|
+
"""Returns a random bipartite graph G_{n,m,k}.
|
|
532
|
+
|
|
533
|
+
Produces a bipartite graph chosen randomly out of the set of all graphs
|
|
534
|
+
with n top nodes, m bottom nodes, and k edges.
|
|
535
|
+
The graph is composed of two sets of nodes.
|
|
536
|
+
Set A has nodes 0 to (n - 1) and set B has nodes n to (n + m - 1).
|
|
537
|
+
|
|
538
|
+
Parameters
|
|
539
|
+
----------
|
|
540
|
+
n : int
|
|
541
|
+
The number of nodes in the first bipartite set.
|
|
542
|
+
m : int
|
|
543
|
+
The number of nodes in the second bipartite set.
|
|
544
|
+
k : int
|
|
545
|
+
The number of edges
|
|
546
|
+
seed : integer, random_state, or None (default)
|
|
547
|
+
Indicator of random number generation state.
|
|
548
|
+
See :ref:`Randomness<randomness>`.
|
|
549
|
+
directed : bool, optional (default=False)
|
|
550
|
+
If True return a directed graph
|
|
551
|
+
|
|
552
|
+
Examples
|
|
553
|
+
--------
|
|
554
|
+
>>> G = nx.bipartite.gnmk_random_graph(10, 20, 50)
|
|
555
|
+
|
|
556
|
+
See Also
|
|
557
|
+
--------
|
|
558
|
+
gnm_random_graph
|
|
559
|
+
|
|
560
|
+
Notes
|
|
561
|
+
-----
|
|
562
|
+
If k > m * n then a complete bipartite graph is returned.
|
|
563
|
+
|
|
564
|
+
This graph is a bipartite version of the `G_{nm}` random graph model.
|
|
565
|
+
|
|
566
|
+
The nodes are assigned the attribute 'bipartite' with the value 0 or 1
|
|
567
|
+
to indicate which bipartite set the node belongs to.
|
|
568
|
+
|
|
569
|
+
This function is not imported in the main namespace.
|
|
570
|
+
To use it use nx.bipartite.gnmk_random_graph
|
|
571
|
+
"""
|
|
572
|
+
G = nx.Graph()
|
|
573
|
+
G = _add_nodes_with_bipartite_label(G, n, m)
|
|
574
|
+
if directed:
|
|
575
|
+
G = nx.DiGraph(G)
|
|
576
|
+
G.name = f"bipartite_gnm_random_graph({n},{m},{k})"
|
|
577
|
+
if n == 1 or m == 1:
|
|
578
|
+
return G
|
|
579
|
+
max_edges = n * m # max_edges for bipartite networks
|
|
580
|
+
if k >= max_edges: # Maybe we should raise an exception here
|
|
581
|
+
return nx.complete_bipartite_graph(n, m, create_using=G)
|
|
582
|
+
|
|
583
|
+
top = [n for n, d in G.nodes(data=True) if d["bipartite"] == 0]
|
|
584
|
+
bottom = list(set(G) - set(top))
|
|
585
|
+
edge_count = 0
|
|
586
|
+
while edge_count < k:
|
|
587
|
+
# generate random edge,u,v
|
|
588
|
+
u = seed.choice(top)
|
|
589
|
+
v = seed.choice(bottom)
|
|
590
|
+
if v in G[u]:
|
|
591
|
+
continue
|
|
592
|
+
else:
|
|
593
|
+
G.add_edge(u, v)
|
|
594
|
+
edge_count += 1
|
|
595
|
+
return G
|
|
596
|
+
|
|
597
|
+
|
|
598
|
+
def _add_nodes_with_bipartite_label(G, lena, lenb):
|
|
599
|
+
G.add_nodes_from(range(lena + lenb))
|
|
600
|
+
b = dict(zip(range(lena), [0] * lena))
|
|
601
|
+
b.update(dict(zip(range(lena, lena + lenb), [1] * lenb)))
|
|
602
|
+
nx.set_node_attributes(G, b, "bipartite")
|
|
603
|
+
return G
|