okstra 0.108.0 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (642) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/profiles/_common-contract.md +1 -1
  4. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  5. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  6. package/runtime/python/okstra_project/__init__.py +2 -0
  7. package/runtime/python/okstra_project/state.py +36 -0
  8. package/runtime/python/okstra_vendor/__init__.py +41 -0
  9. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  10. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  11. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  12. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  13. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  14. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  15. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  16. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  17. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  18. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  19. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  20. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  21. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  22. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  23. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  24. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  25. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  26. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  27. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  28. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  29. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  30. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  36. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  37. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  38. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  39. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  40. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  41. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  42. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  43. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  44. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  45. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  46. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
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@@ -0,0 +1,615 @@
1
+ import math
2
+ from functools import partial
3
+
4
+ import pytest
5
+
6
+ import networkx as nx
7
+
8
+
9
+ def _test_func(G, ebunch, expected, predict_func, **kwargs):
10
+ result = predict_func(G, ebunch, **kwargs)
11
+ exp_dict = {tuple(sorted([u, v])): score for u, v, score in expected}
12
+ res_dict = {tuple(sorted([u, v])): score for u, v, score in result}
13
+
14
+ assert len(exp_dict) == len(res_dict)
15
+ for p in exp_dict:
16
+ assert exp_dict[p] == pytest.approx(res_dict[p], abs=1e-7)
17
+
18
+
19
+ class TestResourceAllocationIndex:
20
+ @classmethod
21
+ def setup_class(cls):
22
+ cls.func = staticmethod(nx.resource_allocation_index)
23
+ cls.test = staticmethod(partial(_test_func, predict_func=cls.func))
24
+
25
+ def test_K5(self):
26
+ G = nx.complete_graph(5)
27
+ self.test(G, [(0, 1)], [(0, 1, 0.75)])
28
+
29
+ def test_P3(self):
30
+ G = nx.path_graph(3)
31
+ self.test(G, [(0, 2)], [(0, 2, 0.5)])
32
+
33
+ def test_S4(self):
34
+ G = nx.star_graph(4)
35
+ self.test(G, [(1, 2)], [(1, 2, 0.25)])
36
+
37
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
38
+ def test_notimplemented(self, graph_type):
39
+ G = graph_type([(0, 1), (1, 2)])
40
+ with pytest.raises(nx.NetworkXNotImplemented):
41
+ self.func(G, [(0, 2)])
42
+
43
+ def test_node_not_found(self):
44
+ G = nx.Graph()
45
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
46
+ with pytest.raises(nx.NodeNotFound):
47
+ self.func(G, [(0, 4)])
48
+
49
+ def test_no_common_neighbor(self):
50
+ G = nx.Graph()
51
+ G.add_nodes_from([0, 1])
52
+ self.test(G, [(0, 1)], [(0, 1, 0)])
53
+
54
+ def test_equal_nodes(self):
55
+ G = nx.complete_graph(4)
56
+ self.test(G, [(0, 0)], [(0, 0, 1)])
57
+
58
+ def test_all_nonexistent_edges(self):
59
+ G = nx.Graph()
60
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
61
+ self.test(G, None, [(0, 3, 0.5), (1, 2, 0.5), (1, 3, 0)])
62
+
63
+
64
+ class TestJaccardCoefficient:
65
+ @classmethod
66
+ def setup_class(cls):
67
+ cls.func = staticmethod(nx.jaccard_coefficient)
68
+ cls.test = staticmethod(partial(_test_func, predict_func=cls.func))
69
+
70
+ def test_K5(self):
71
+ G = nx.complete_graph(5)
72
+ self.test(G, [(0, 1)], [(0, 1, 0.6)])
73
+
74
+ def test_P4(self):
75
+ G = nx.path_graph(4)
76
+ self.test(G, [(0, 2)], [(0, 2, 0.5)])
77
+
78
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
79
+ def test_notimplemented(self, graph_type):
80
+ G = graph_type([(0, 1), (1, 2)])
81
+ with pytest.raises(nx.NetworkXNotImplemented):
82
+ self.func(G, [(0, 2)])
83
+
84
+ def test_node_not_found(self):
85
+ G = nx.Graph()
86
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
87
+ with pytest.raises(nx.NodeNotFound):
88
+ self.func(G, [(0, 4)])
89
+
90
+ def test_no_common_neighbor(self):
91
+ G = nx.Graph()
92
+ G.add_edges_from([(0, 1), (2, 3)])
93
+ self.test(G, [(0, 2)], [(0, 2, 0)])
94
+
95
+ def test_isolated_nodes(self):
96
+ G = nx.Graph()
97
+ G.add_nodes_from([0, 1])
98
+ self.test(G, [(0, 1)], [(0, 1, 0)])
99
+
100
+ def test_all_nonexistent_edges(self):
101
+ G = nx.Graph()
102
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
103
+ self.test(G, None, [(0, 3, 0.5), (1, 2, 0.5), (1, 3, 0)])
104
+
105
+
106
+ class TestAdamicAdarIndex:
107
+ @classmethod
108
+ def setup_class(cls):
109
+ cls.func = staticmethod(nx.adamic_adar_index)
110
+ cls.test = staticmethod(partial(_test_func, predict_func=cls.func))
111
+
112
+ def test_K5(self):
113
+ G = nx.complete_graph(5)
114
+ self.test(G, [(0, 1)], [(0, 1, 3 / math.log(4))])
115
+
116
+ def test_P3(self):
117
+ G = nx.path_graph(3)
118
+ self.test(G, [(0, 2)], [(0, 2, 1 / math.log(2))])
119
+
120
+ def test_S4(self):
121
+ G = nx.star_graph(4)
122
+ self.test(G, [(1, 2)], [(1, 2, 1 / math.log(4))])
123
+
124
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
125
+ def test_notimplemented(self, graph_type):
126
+ with pytest.raises(nx.NetworkXNotImplemented):
127
+ G = graph_type([(0, 1), (1, 2)])
128
+ self.func(G, [(0, 2)])
129
+
130
+ def test_node_not_found(self):
131
+ G = nx.Graph()
132
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
133
+ with pytest.raises(nx.NodeNotFound):
134
+ self.func(G, [(0, 4)])
135
+
136
+ def test_no_common_neighbor(self):
137
+ G = nx.Graph()
138
+ G.add_nodes_from([0, 1])
139
+ self.test(G, [(0, 1)], [(0, 1, 0)])
140
+
141
+ def test_equal_nodes(self):
142
+ G = nx.complete_graph(4)
143
+ self.test(G, [(0, 0)], [(0, 0, 3 / math.log(3))])
144
+
145
+ def test_all_nonexistent_edges(self):
146
+ G = nx.Graph()
147
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
148
+ self.test(
149
+ G, None, [(0, 3, 1 / math.log(2)), (1, 2, 1 / math.log(2)), (1, 3, 0)]
150
+ )
151
+
152
+
153
+ class TestCommonNeighborCentrality:
154
+ @classmethod
155
+ def setup_class(cls):
156
+ cls.func = staticmethod(nx.common_neighbor_centrality)
157
+ cls.test = staticmethod(partial(_test_func, predict_func=cls.func))
158
+
159
+ def test_K5(self):
160
+ G = nx.complete_graph(5)
161
+ self.test(G, [(0, 1)], [(0, 1, 3.0)], alpha=1)
162
+ self.test(G, [(0, 1)], [(0, 1, 5.0)], alpha=0)
163
+
164
+ def test_P3(self):
165
+ G = nx.path_graph(3)
166
+ self.test(G, [(0, 2)], [(0, 2, 1.25)], alpha=0.5)
167
+
168
+ def test_S4(self):
169
+ G = nx.star_graph(4)
170
+ self.test(G, [(1, 2)], [(1, 2, 1.75)], alpha=0.5)
171
+
172
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
173
+ def test_notimplemented(self, graph_type):
174
+ G = graph_type([(0, 1), (1, 2)])
175
+ with pytest.raises(nx.NetworkXNotImplemented):
176
+ self.func(G, [(0, 2)])
177
+
178
+ def test_node_u_not_found(self):
179
+ G = nx.Graph()
180
+ G.add_edges_from([(1, 3), (2, 3)])
181
+ with pytest.raises(nx.NodeNotFound):
182
+ self.func(G, [(0, 1)])
183
+
184
+ def test_node_v_not_found(self):
185
+ G = nx.Graph()
186
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
187
+ with pytest.raises(nx.NodeNotFound):
188
+ self.func(G, [(0, 4)])
189
+
190
+ def test_no_common_neighbor(self):
191
+ G = nx.Graph()
192
+ G.add_nodes_from([0, 1])
193
+ self.test(G, [(0, 1)], [(0, 1, 0)])
194
+
195
+ def test_equal_nodes(self):
196
+ G = nx.complete_graph(4)
197
+ with pytest.raises(nx.NetworkXAlgorithmError):
198
+ self.test(G, [(0, 0)], [])
199
+
200
+ def test_equal_nodes_with_alpha_one_raises_error(self):
201
+ G = nx.complete_graph(4)
202
+ with pytest.raises(nx.NetworkXAlgorithmError):
203
+ self.test(G, [(0, 0)], [], alpha=1.0)
204
+
205
+ def test_all_nonexistent_edges(self):
206
+ G = nx.Graph()
207
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
208
+ self.test(G, None, [(0, 3, 1.5), (1, 2, 1.5), (1, 3, 2 / 3)], alpha=0.5)
209
+
210
+
211
+ class TestPreferentialAttachment:
212
+ @classmethod
213
+ def setup_class(cls):
214
+ cls.func = staticmethod(nx.preferential_attachment)
215
+ cls.test = staticmethod(partial(_test_func, predict_func=cls.func))
216
+
217
+ def test_K5(self):
218
+ G = nx.complete_graph(5)
219
+ self.test(G, [(0, 1)], [(0, 1, 16)])
220
+
221
+ def test_P3(self):
222
+ G = nx.path_graph(3)
223
+ self.test(G, [(0, 1)], [(0, 1, 2)])
224
+
225
+ def test_S4(self):
226
+ G = nx.star_graph(4)
227
+ self.test(G, [(0, 2)], [(0, 2, 4)])
228
+
229
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
230
+ def test_notimplemented(self, graph_type):
231
+ G = graph_type([(0, 1), (1, 2)])
232
+ with pytest.raises(nx.NetworkXNotImplemented):
233
+ self.func(G, [(0, 2)])
234
+
235
+ def test_node_not_found(self):
236
+ G = nx.Graph()
237
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
238
+ with pytest.raises(nx.NodeNotFound):
239
+ self.func(G, [(0, 4)])
240
+
241
+ def test_zero_degrees(self):
242
+ G = nx.Graph()
243
+ G.add_nodes_from([0, 1])
244
+ self.test(G, [(0, 1)], [(0, 1, 0)])
245
+
246
+ def test_all_nonexistent_edges(self):
247
+ G = nx.Graph()
248
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
249
+ self.test(G, None, [(0, 3, 2), (1, 2, 2), (1, 3, 1)])
250
+
251
+
252
+ class TestCNSoundarajanHopcroft:
253
+ @classmethod
254
+ def setup_class(cls):
255
+ cls.func = staticmethod(nx.cn_soundarajan_hopcroft)
256
+ cls.test = staticmethod(
257
+ partial(_test_func, predict_func=cls.func, community="community")
258
+ )
259
+
260
+ def test_K5(self):
261
+ G = nx.complete_graph(5)
262
+ G.nodes[0]["community"] = 0
263
+ G.nodes[1]["community"] = 0
264
+ G.nodes[2]["community"] = 0
265
+ G.nodes[3]["community"] = 0
266
+ G.nodes[4]["community"] = 1
267
+ self.test(G, [(0, 1)], [(0, 1, 5)])
268
+
269
+ def test_P3(self):
270
+ G = nx.path_graph(3)
271
+ G.nodes[0]["community"] = 0
272
+ G.nodes[1]["community"] = 1
273
+ G.nodes[2]["community"] = 0
274
+ self.test(G, [(0, 2)], [(0, 2, 1)])
275
+
276
+ def test_S4(self):
277
+ G = nx.star_graph(4)
278
+ G.nodes[0]["community"] = 1
279
+ G.nodes[1]["community"] = 1
280
+ G.nodes[2]["community"] = 1
281
+ G.nodes[3]["community"] = 0
282
+ G.nodes[4]["community"] = 0
283
+ self.test(G, [(1, 2)], [(1, 2, 2)])
284
+
285
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
286
+ def test_notimplemented(self, graph_type):
287
+ G = graph_type([(0, 1), (1, 2)])
288
+ G.add_nodes_from([0, 1, 2], community=0)
289
+ with pytest.raises(nx.NetworkXNotImplemented):
290
+ self.func(G, [(0, 2)])
291
+
292
+ def test_node_not_found(self):
293
+ G = nx.Graph()
294
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
295
+ G.nodes[0]["community"] = 0
296
+ G.nodes[1]["community"] = 1
297
+ G.nodes[2]["community"] = 0
298
+ G.nodes[3]["community"] = 0
299
+ with pytest.raises(nx.NodeNotFound):
300
+ self.func(G, [(0, 4)])
301
+
302
+ def test_no_common_neighbor(self):
303
+ G = nx.Graph()
304
+ G.add_nodes_from([0, 1])
305
+ G.nodes[0]["community"] = 0
306
+ G.nodes[1]["community"] = 0
307
+ self.test(G, [(0, 1)], [(0, 1, 0)])
308
+
309
+ def test_equal_nodes(self):
310
+ G = nx.complete_graph(3)
311
+ G.nodes[0]["community"] = 0
312
+ G.nodes[1]["community"] = 0
313
+ G.nodes[2]["community"] = 0
314
+ self.test(G, [(0, 0)], [(0, 0, 4)])
315
+
316
+ def test_different_community(self):
317
+ G = nx.Graph()
318
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
319
+ G.nodes[0]["community"] = 0
320
+ G.nodes[1]["community"] = 0
321
+ G.nodes[2]["community"] = 0
322
+ G.nodes[3]["community"] = 1
323
+ self.test(G, [(0, 3)], [(0, 3, 2)])
324
+
325
+ def test_no_community_information(self):
326
+ G = nx.complete_graph(5)
327
+ with pytest.raises(nx.NetworkXAlgorithmError):
328
+ list(self.func(G, [(0, 1)]))
329
+
330
+ def test_insufficient_community_information(self):
331
+ G = nx.Graph()
332
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
333
+ G.nodes[0]["community"] = 0
334
+ G.nodes[1]["community"] = 0
335
+ G.nodes[3]["community"] = 0
336
+ with pytest.raises(nx.NetworkXAlgorithmError):
337
+ list(self.func(G, [(0, 3)]))
338
+
339
+ def test_sufficient_community_information(self):
340
+ G = nx.Graph()
341
+ G.add_edges_from([(0, 1), (1, 2), (1, 3), (2, 4), (3, 4), (4, 5)])
342
+ G.nodes[1]["community"] = 0
343
+ G.nodes[2]["community"] = 0
344
+ G.nodes[3]["community"] = 0
345
+ G.nodes[4]["community"] = 0
346
+ self.test(G, [(1, 4)], [(1, 4, 4)])
347
+
348
+ def test_custom_community_attribute_name(self):
349
+ G = nx.Graph()
350
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
351
+ G.nodes[0]["cmty"] = 0
352
+ G.nodes[1]["cmty"] = 0
353
+ G.nodes[2]["cmty"] = 0
354
+ G.nodes[3]["cmty"] = 1
355
+ self.test(G, [(0, 3)], [(0, 3, 2)], community="cmty")
356
+
357
+ def test_all_nonexistent_edges(self):
358
+ G = nx.Graph()
359
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
360
+ G.nodes[0]["community"] = 0
361
+ G.nodes[1]["community"] = 1
362
+ G.nodes[2]["community"] = 0
363
+ G.nodes[3]["community"] = 0
364
+ self.test(G, None, [(0, 3, 2), (1, 2, 1), (1, 3, 0)])
365
+
366
+
367
+ class TestRAIndexSoundarajanHopcroft:
368
+ @classmethod
369
+ def setup_class(cls):
370
+ cls.func = staticmethod(nx.ra_index_soundarajan_hopcroft)
371
+ cls.test = staticmethod(
372
+ partial(_test_func, predict_func=cls.func, community="community")
373
+ )
374
+
375
+ def test_K5(self):
376
+ G = nx.complete_graph(5)
377
+ G.nodes[0]["community"] = 0
378
+ G.nodes[1]["community"] = 0
379
+ G.nodes[2]["community"] = 0
380
+ G.nodes[3]["community"] = 0
381
+ G.nodes[4]["community"] = 1
382
+ self.test(G, [(0, 1)], [(0, 1, 0.5)])
383
+
384
+ def test_P3(self):
385
+ G = nx.path_graph(3)
386
+ G.nodes[0]["community"] = 0
387
+ G.nodes[1]["community"] = 1
388
+ G.nodes[2]["community"] = 0
389
+ self.test(G, [(0, 2)], [(0, 2, 0)])
390
+
391
+ def test_S4(self):
392
+ G = nx.star_graph(4)
393
+ G.nodes[0]["community"] = 1
394
+ G.nodes[1]["community"] = 1
395
+ G.nodes[2]["community"] = 1
396
+ G.nodes[3]["community"] = 0
397
+ G.nodes[4]["community"] = 0
398
+ self.test(G, [(1, 2)], [(1, 2, 0.25)])
399
+
400
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
401
+ def test_notimplemented(self, graph_type):
402
+ G = graph_type([(0, 1), (1, 2)])
403
+ G.add_nodes_from([0, 1, 2], community=0)
404
+ with pytest.raises(nx.NetworkXNotImplemented):
405
+ self.func(G, [(0, 2)])
406
+
407
+ def test_node_not_found(self):
408
+ G = nx.Graph()
409
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
410
+ G.nodes[0]["community"] = 0
411
+ G.nodes[1]["community"] = 1
412
+ G.nodes[2]["community"] = 0
413
+ G.nodes[3]["community"] = 0
414
+ with pytest.raises(nx.NodeNotFound):
415
+ self.func(G, [(0, 4)])
416
+
417
+ def test_no_common_neighbor(self):
418
+ G = nx.Graph()
419
+ G.add_nodes_from([0, 1])
420
+ G.nodes[0]["community"] = 0
421
+ G.nodes[1]["community"] = 0
422
+ self.test(G, [(0, 1)], [(0, 1, 0)])
423
+
424
+ def test_equal_nodes(self):
425
+ G = nx.complete_graph(3)
426
+ G.nodes[0]["community"] = 0
427
+ G.nodes[1]["community"] = 0
428
+ G.nodes[2]["community"] = 0
429
+ self.test(G, [(0, 0)], [(0, 0, 1)])
430
+
431
+ def test_different_community(self):
432
+ G = nx.Graph()
433
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
434
+ G.nodes[0]["community"] = 0
435
+ G.nodes[1]["community"] = 0
436
+ G.nodes[2]["community"] = 0
437
+ G.nodes[3]["community"] = 1
438
+ self.test(G, [(0, 3)], [(0, 3, 0)])
439
+
440
+ def test_no_community_information(self):
441
+ G = nx.complete_graph(5)
442
+ with pytest.raises(nx.NetworkXAlgorithmError):
443
+ list(self.func(G, [(0, 1)]))
444
+
445
+ def test_insufficient_community_information(self):
446
+ G = nx.Graph()
447
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
448
+ G.nodes[0]["community"] = 0
449
+ G.nodes[1]["community"] = 0
450
+ G.nodes[3]["community"] = 0
451
+ with pytest.raises(nx.NetworkXAlgorithmError):
452
+ list(self.func(G, [(0, 3)]))
453
+
454
+ def test_sufficient_community_information(self):
455
+ G = nx.Graph()
456
+ G.add_edges_from([(0, 1), (1, 2), (1, 3), (2, 4), (3, 4), (4, 5)])
457
+ G.nodes[1]["community"] = 0
458
+ G.nodes[2]["community"] = 0
459
+ G.nodes[3]["community"] = 0
460
+ G.nodes[4]["community"] = 0
461
+ self.test(G, [(1, 4)], [(1, 4, 1)])
462
+
463
+ def test_custom_community_attribute_name(self):
464
+ G = nx.Graph()
465
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
466
+ G.nodes[0]["cmty"] = 0
467
+ G.nodes[1]["cmty"] = 0
468
+ G.nodes[2]["cmty"] = 0
469
+ G.nodes[3]["cmty"] = 1
470
+ self.test(G, [(0, 3)], [(0, 3, 0)], community="cmty")
471
+
472
+ def test_all_nonexistent_edges(self):
473
+ G = nx.Graph()
474
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
475
+ G.nodes[0]["community"] = 0
476
+ G.nodes[1]["community"] = 1
477
+ G.nodes[2]["community"] = 0
478
+ G.nodes[3]["community"] = 0
479
+ self.test(G, None, [(0, 3, 0.5), (1, 2, 0), (1, 3, 0)])
480
+
481
+
482
+ class TestWithinInterCluster:
483
+ @classmethod
484
+ def setup_class(cls):
485
+ cls.delta = 0.001
486
+ cls.func = staticmethod(nx.within_inter_cluster)
487
+ cls.test = staticmethod(
488
+ partial(
489
+ _test_func,
490
+ predict_func=cls.func,
491
+ delta=cls.delta,
492
+ community="community",
493
+ )
494
+ )
495
+
496
+ def test_K5(self):
497
+ G = nx.complete_graph(5)
498
+ G.nodes[0]["community"] = 0
499
+ G.nodes[1]["community"] = 0
500
+ G.nodes[2]["community"] = 0
501
+ G.nodes[3]["community"] = 0
502
+ G.nodes[4]["community"] = 1
503
+ self.test(G, [(0, 1)], [(0, 1, 2 / (1 + self.delta))])
504
+
505
+ def test_P3(self):
506
+ G = nx.path_graph(3)
507
+ G.nodes[0]["community"] = 0
508
+ G.nodes[1]["community"] = 1
509
+ G.nodes[2]["community"] = 0
510
+ self.test(G, [(0, 2)], [(0, 2, 0)])
511
+
512
+ def test_S4(self):
513
+ G = nx.star_graph(4)
514
+ G.nodes[0]["community"] = 1
515
+ G.nodes[1]["community"] = 1
516
+ G.nodes[2]["community"] = 1
517
+ G.nodes[3]["community"] = 0
518
+ G.nodes[4]["community"] = 0
519
+ self.test(G, [(1, 2)], [(1, 2, 1 / self.delta)])
520
+
521
+ @pytest.mark.parametrize("graph_type", (nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph))
522
+ def test_notimplemented(self, graph_type):
523
+ G = graph_type([(0, 1), (1, 2)])
524
+ G.add_nodes_from([0, 1, 2], community=0)
525
+ with pytest.raises(nx.NetworkXNotImplemented):
526
+ self.func(G, [(0, 2)])
527
+
528
+ def test_node_not_found(self):
529
+ G = nx.Graph()
530
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
531
+ G.nodes[0]["community"] = 0
532
+ G.nodes[1]["community"] = 1
533
+ G.nodes[2]["community"] = 0
534
+ G.nodes[3]["community"] = 0
535
+ with pytest.raises(nx.NodeNotFound):
536
+ self.func(G, [(0, 4)])
537
+
538
+ def test_no_common_neighbor(self):
539
+ G = nx.Graph()
540
+ G.add_nodes_from([0, 1])
541
+ G.nodes[0]["community"] = 0
542
+ G.nodes[1]["community"] = 0
543
+ self.test(G, [(0, 1)], [(0, 1, 0)])
544
+
545
+ def test_equal_nodes(self):
546
+ G = nx.complete_graph(3)
547
+ G.nodes[0]["community"] = 0
548
+ G.nodes[1]["community"] = 0
549
+ G.nodes[2]["community"] = 0
550
+ self.test(G, [(0, 0)], [(0, 0, 2 / self.delta)])
551
+
552
+ def test_different_community(self):
553
+ G = nx.Graph()
554
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
555
+ G.nodes[0]["community"] = 0
556
+ G.nodes[1]["community"] = 0
557
+ G.nodes[2]["community"] = 0
558
+ G.nodes[3]["community"] = 1
559
+ self.test(G, [(0, 3)], [(0, 3, 0)])
560
+
561
+ def test_no_inter_cluster_common_neighbor(self):
562
+ G = nx.complete_graph(4)
563
+ G.nodes[0]["community"] = 0
564
+ G.nodes[1]["community"] = 0
565
+ G.nodes[2]["community"] = 0
566
+ G.nodes[3]["community"] = 0
567
+ self.test(G, [(0, 3)], [(0, 3, 2 / self.delta)])
568
+
569
+ def test_no_community_information(self):
570
+ G = nx.complete_graph(5)
571
+ with pytest.raises(nx.NetworkXAlgorithmError):
572
+ list(self.func(G, [(0, 1)]))
573
+
574
+ def test_insufficient_community_information(self):
575
+ G = nx.Graph()
576
+ G.add_edges_from([(0, 1), (0, 2), (1, 3), (2, 3)])
577
+ G.nodes[0]["community"] = 0
578
+ G.nodes[1]["community"] = 0
579
+ G.nodes[3]["community"] = 0
580
+ with pytest.raises(nx.NetworkXAlgorithmError):
581
+ list(self.func(G, [(0, 3)]))
582
+
583
+ def test_sufficient_community_information(self):
584
+ G = nx.Graph()
585
+ G.add_edges_from([(0, 1), (1, 2), (1, 3), (2, 4), (3, 4), (4, 5)])
586
+ G.nodes[1]["community"] = 0
587
+ G.nodes[2]["community"] = 0
588
+ G.nodes[3]["community"] = 0
589
+ G.nodes[4]["community"] = 0
590
+ self.test(G, [(1, 4)], [(1, 4, 2 / self.delta)])
591
+
592
+ def test_invalid_delta(self):
593
+ G = nx.complete_graph(3)
594
+ G.add_nodes_from([0, 1, 2], community=0)
595
+ with pytest.raises(nx.NetworkXAlgorithmError):
596
+ self.func(G, [(0, 1)], 0)
597
+ with pytest.raises(nx.NetworkXAlgorithmError):
598
+ self.func(G, [(0, 1)], -0.5)
599
+
600
+ def test_custom_community_attribute_name(self):
601
+ G = nx.complete_graph(4)
602
+ G.nodes[0]["cmty"] = 0
603
+ G.nodes[1]["cmty"] = 0
604
+ G.nodes[2]["cmty"] = 0
605
+ G.nodes[3]["cmty"] = 0
606
+ self.test(G, [(0, 3)], [(0, 3, 2 / self.delta)], community="cmty")
607
+
608
+ def test_all_nonexistent_edges(self):
609
+ G = nx.Graph()
610
+ G.add_edges_from([(0, 1), (0, 2), (2, 3)])
611
+ G.nodes[0]["community"] = 0
612
+ G.nodes[1]["community"] = 1
613
+ G.nodes[2]["community"] = 0
614
+ G.nodes[3]["community"] = 0
615
+ self.test(G, None, [(0, 3, 1 / self.delta), (1, 2, 0), (1, 3, 0)])