okstra 0.108.0 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (642) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/profiles/_common-contract.md +1 -1
  4. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  5. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  6. package/runtime/python/okstra_project/__init__.py +2 -0
  7. package/runtime/python/okstra_project/state.py +36 -0
  8. package/runtime/python/okstra_vendor/__init__.py +41 -0
  9. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  10. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  11. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  12. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  13. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  14. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  15. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  16. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  17. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  18. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  19. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  20. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  21. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  22. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  23. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  24. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  25. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  26. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  27. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  28. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  29. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  30. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  36. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  37. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  38. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  39. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  40. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  41. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  42. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  43. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  44. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  45. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  46. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
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@@ -0,0 +1,409 @@
1
+ import pytest
2
+
3
+ import networkx as nx
4
+ from networkx.algorithms import bipartite
5
+ from networkx.utils import edges_equal, nodes_equal
6
+
7
+
8
+ class TestBipartiteProject:
9
+ def test_path_projected_graph(self):
10
+ G = nx.path_graph(4)
11
+ P = bipartite.projected_graph(G, [1, 3])
12
+ assert nodes_equal(list(P), [1, 3])
13
+ assert edges_equal(list(P.edges()), [(1, 3)])
14
+ P = bipartite.projected_graph(G, [0, 2])
15
+ assert nodes_equal(list(P), [0, 2])
16
+ assert edges_equal(list(P.edges()), [(0, 2)])
17
+ G = nx.MultiGraph([(0, 1)])
18
+ with pytest.raises(nx.NetworkXError, match="not defined for multigraphs"):
19
+ bipartite.projected_graph(G, [0])
20
+
21
+ def test_path_projected_properties_graph(self):
22
+ G = nx.path_graph(4)
23
+ G.add_node(1, name="one")
24
+ G.add_node(2, name="two")
25
+ P = bipartite.projected_graph(G, [1, 3])
26
+ assert nodes_equal(list(P), [1, 3])
27
+ assert edges_equal(list(P.edges()), [(1, 3)])
28
+ assert P.nodes[1]["name"] == G.nodes[1]["name"]
29
+ P = bipartite.projected_graph(G, [0, 2])
30
+ assert nodes_equal(list(P), [0, 2])
31
+ assert edges_equal(list(P.edges()), [(0, 2)])
32
+ assert P.nodes[2]["name"] == G.nodes[2]["name"]
33
+
34
+ def test_path_collaboration_projected_graph(self):
35
+ G = nx.path_graph(4)
36
+ P = bipartite.collaboration_weighted_projected_graph(G, [1, 3])
37
+ assert nodes_equal(list(P), [1, 3])
38
+ assert edges_equal(list(P.edges()), [(1, 3)])
39
+ P[1][3]["weight"] = 1
40
+ P = bipartite.collaboration_weighted_projected_graph(G, [0, 2])
41
+ assert nodes_equal(list(P), [0, 2])
42
+ assert edges_equal(list(P.edges()), [(0, 2)])
43
+ P[0][2]["weight"] = 1
44
+
45
+ def test_directed_path_collaboration_projected_graph(self):
46
+ G = nx.DiGraph()
47
+ nx.add_path(G, range(4))
48
+ P = bipartite.collaboration_weighted_projected_graph(G, [1, 3])
49
+ assert nodes_equal(list(P), [1, 3])
50
+ assert edges_equal(list(P.edges()), [(1, 3)])
51
+ P[1][3]["weight"] = 1
52
+ P = bipartite.collaboration_weighted_projected_graph(G, [0, 2])
53
+ assert nodes_equal(list(P), [0, 2])
54
+ assert edges_equal(list(P.edges()), [(0, 2)])
55
+ P[0][2]["weight"] = 1
56
+
57
+ def test_path_weighted_projected_graph(self):
58
+ G = nx.path_graph(4)
59
+
60
+ with pytest.raises(nx.NetworkXAlgorithmError):
61
+ bipartite.weighted_projected_graph(G, [1, 2, 3, 3])
62
+
63
+ P = bipartite.weighted_projected_graph(G, [1, 3])
64
+ assert nodes_equal(list(P), [1, 3])
65
+ assert edges_equal(list(P.edges()), [(1, 3)])
66
+ P[1][3]["weight"] = 1
67
+ P = bipartite.weighted_projected_graph(G, [0, 2])
68
+ assert nodes_equal(list(P), [0, 2])
69
+ assert edges_equal(list(P.edges()), [(0, 2)])
70
+ P[0][2]["weight"] = 1
71
+
72
+ def test_digraph_weighted_projection(self):
73
+ G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 4)])
74
+ P = bipartite.overlap_weighted_projected_graph(G, [1, 3])
75
+ assert nx.get_edge_attributes(P, "weight") == {(1, 3): 1.0}
76
+ assert len(P) == 2
77
+
78
+ def test_path_weighted_projected_directed_graph(self):
79
+ G = nx.DiGraph()
80
+ nx.add_path(G, range(4))
81
+ P = bipartite.weighted_projected_graph(G, [1, 3])
82
+ assert nodes_equal(list(P), [1, 3])
83
+ assert edges_equal(list(P.edges()), [(1, 3)], directed=True)
84
+ P[1][3]["weight"] = 1
85
+ P = bipartite.weighted_projected_graph(G, [0, 2])
86
+ assert nodes_equal(list(P), [0, 2])
87
+ assert edges_equal(list(P.edges()), [(0, 2)], directed=True)
88
+ P[0][2]["weight"] = 1
89
+
90
+ def test_star_projected_graph(self):
91
+ G = nx.star_graph(3)
92
+ P = bipartite.projected_graph(G, [1, 2, 3])
93
+ assert nodes_equal(list(P), [1, 2, 3])
94
+ assert edges_equal(list(P.edges()), [(1, 2), (1, 3), (2, 3)])
95
+ P = bipartite.weighted_projected_graph(G, [1, 2, 3])
96
+ assert nodes_equal(list(P), [1, 2, 3])
97
+ assert edges_equal(list(P.edges()), [(1, 2), (1, 3), (2, 3)])
98
+
99
+ P = bipartite.projected_graph(G, [0])
100
+ assert nodes_equal(list(P), [0])
101
+ assert edges_equal(list(P.edges()), [])
102
+
103
+ def test_project_multigraph(self):
104
+ G = nx.Graph()
105
+ G.add_edge("a", 1)
106
+ G.add_edge("b", 1)
107
+ G.add_edge("a", 2)
108
+ G.add_edge("b", 2)
109
+ P = bipartite.projected_graph(G, "ab")
110
+ assert edges_equal(list(P.edges()), [("a", "b")])
111
+ P = bipartite.weighted_projected_graph(G, "ab")
112
+ assert edges_equal(list(P.edges()), [("a", "b")])
113
+ P = bipartite.projected_graph(G, "ab", multigraph=True)
114
+ assert edges_equal(list(P.edges()), [("a", "b"), ("a", "b")])
115
+
116
+ def test_project_collaboration(self):
117
+ G = nx.Graph()
118
+ G.add_edge("a", 1)
119
+ G.add_edge("b", 1)
120
+ G.add_edge("b", 2)
121
+ G.add_edge("c", 2)
122
+ G.add_edge("c", 3)
123
+ G.add_edge("c", 4)
124
+ G.add_edge("b", 4)
125
+ P = bipartite.collaboration_weighted_projected_graph(G, "abc")
126
+ assert P["a"]["b"]["weight"] == 1
127
+ assert P["b"]["c"]["weight"] == 2
128
+
129
+ def test_directed_projection(self):
130
+ G = nx.DiGraph()
131
+ G.add_edge("A", 1)
132
+ G.add_edge(1, "B")
133
+ G.add_edge("A", 2)
134
+ G.add_edge("B", 2)
135
+ P = bipartite.projected_graph(G, "AB")
136
+ assert edges_equal(list(P.edges()), [("A", "B")], directed=True)
137
+ P = bipartite.weighted_projected_graph(G, "AB")
138
+ assert edges_equal(list(P.edges()), [("A", "B")], directed=True)
139
+ assert P["A"]["B"]["weight"] == 1
140
+
141
+ P = bipartite.projected_graph(G, "AB", multigraph=True)
142
+ assert edges_equal(list(P.edges()), [("A", "B")], directed=True)
143
+
144
+ G = nx.DiGraph()
145
+ G.add_edge("A", 1)
146
+ G.add_edge(1, "B")
147
+ G.add_edge("A", 2)
148
+ G.add_edge(2, "B")
149
+ P = bipartite.projected_graph(G, "AB")
150
+ assert edges_equal(list(P.edges()), [("A", "B")], directed=True)
151
+ P = bipartite.weighted_projected_graph(G, "AB")
152
+ assert edges_equal(list(P.edges()), [("A", "B")], directed=True)
153
+ assert P["A"]["B"]["weight"] == 2
154
+
155
+ P = bipartite.projected_graph(G, "AB", multigraph=True)
156
+ assert edges_equal(list(P.edges()), [("A", "B"), ("A", "B")], directed=True)
157
+
158
+
159
+ class TestBipartiteWeightedProjection:
160
+ @classmethod
161
+ def setup_class(cls):
162
+ # Tore Opsahl's example
163
+ # http://toreopsahl.com/2009/05/01/projecting-two-mode-networks-onto-weighted-one-mode-networks/
164
+ cls.G = nx.Graph()
165
+ cls.G.add_edge("A", 1)
166
+ cls.G.add_edge("A", 2)
167
+ cls.G.add_edge("B", 1)
168
+ cls.G.add_edge("B", 2)
169
+ cls.G.add_edge("B", 3)
170
+ cls.G.add_edge("B", 4)
171
+ cls.G.add_edge("B", 5)
172
+ cls.G.add_edge("C", 1)
173
+ cls.G.add_edge("D", 3)
174
+ cls.G.add_edge("E", 4)
175
+ cls.G.add_edge("E", 5)
176
+ cls.G.add_edge("E", 6)
177
+ cls.G.add_edge("F", 6)
178
+ # Graph based on figure 6 from Newman (2001)
179
+ cls.N = nx.Graph()
180
+ cls.N.add_edge("A", 1)
181
+ cls.N.add_edge("A", 2)
182
+ cls.N.add_edge("A", 3)
183
+ cls.N.add_edge("B", 1)
184
+ cls.N.add_edge("B", 2)
185
+ cls.N.add_edge("B", 3)
186
+ cls.N.add_edge("C", 1)
187
+ cls.N.add_edge("D", 1)
188
+ cls.N.add_edge("E", 3)
189
+
190
+ def test_project_weighted_shared(self):
191
+ edges = [
192
+ ("A", "B", 2),
193
+ ("A", "C", 1),
194
+ ("B", "C", 1),
195
+ ("B", "D", 1),
196
+ ("B", "E", 2),
197
+ ("E", "F", 1),
198
+ ]
199
+ Panswer = nx.Graph()
200
+ Panswer.add_weighted_edges_from(edges)
201
+ P = bipartite.weighted_projected_graph(self.G, "ABCDEF")
202
+ assert edges_equal(list(P.edges()), Panswer.edges())
203
+ for u, v in list(P.edges()):
204
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
205
+
206
+ edges = [
207
+ ("A", "B", 3),
208
+ ("A", "E", 1),
209
+ ("A", "C", 1),
210
+ ("A", "D", 1),
211
+ ("B", "E", 1),
212
+ ("B", "C", 1),
213
+ ("B", "D", 1),
214
+ ("C", "D", 1),
215
+ ]
216
+ Panswer = nx.Graph()
217
+ Panswer.add_weighted_edges_from(edges)
218
+ P = bipartite.weighted_projected_graph(self.N, "ABCDE")
219
+ assert edges_equal(list(P.edges()), Panswer.edges())
220
+ for u, v in list(P.edges()):
221
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
222
+
223
+ def test_project_weighted_newman(self):
224
+ edges = [
225
+ ("A", "B", 1.5),
226
+ ("A", "C", 0.5),
227
+ ("B", "C", 0.5),
228
+ ("B", "D", 1),
229
+ ("B", "E", 2),
230
+ ("E", "F", 1),
231
+ ]
232
+ Panswer = nx.Graph()
233
+ Panswer.add_weighted_edges_from(edges)
234
+ P = bipartite.collaboration_weighted_projected_graph(self.G, "ABCDEF")
235
+ assert edges_equal(list(P.edges()), Panswer.edges())
236
+ for u, v in list(P.edges()):
237
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
238
+
239
+ edges = [
240
+ ("A", "B", 11 / 6.0),
241
+ ("A", "E", 1 / 2.0),
242
+ ("A", "C", 1 / 3.0),
243
+ ("A", "D", 1 / 3.0),
244
+ ("B", "E", 1 / 2.0),
245
+ ("B", "C", 1 / 3.0),
246
+ ("B", "D", 1 / 3.0),
247
+ ("C", "D", 1 / 3.0),
248
+ ]
249
+ Panswer = nx.Graph()
250
+ Panswer.add_weighted_edges_from(edges)
251
+ P = bipartite.collaboration_weighted_projected_graph(self.N, "ABCDE")
252
+ assert edges_equal(list(P.edges()), Panswer.edges())
253
+ for u, v in list(P.edges()):
254
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
255
+
256
+ def test_project_weighted_ratio(self):
257
+ edges = [
258
+ ("A", "B", 2 / 6.0),
259
+ ("A", "C", 1 / 6.0),
260
+ ("B", "C", 1 / 6.0),
261
+ ("B", "D", 1 / 6.0),
262
+ ("B", "E", 2 / 6.0),
263
+ ("E", "F", 1 / 6.0),
264
+ ]
265
+ Panswer = nx.Graph()
266
+ Panswer.add_weighted_edges_from(edges)
267
+ P = bipartite.weighted_projected_graph(self.G, "ABCDEF", ratio=True)
268
+ assert edges_equal(list(P.edges()), Panswer.edges())
269
+ for u, v in list(P.edges()):
270
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
271
+
272
+ edges = [
273
+ ("A", "B", 3 / 3.0),
274
+ ("A", "E", 1 / 3.0),
275
+ ("A", "C", 1 / 3.0),
276
+ ("A", "D", 1 / 3.0),
277
+ ("B", "E", 1 / 3.0),
278
+ ("B", "C", 1 / 3.0),
279
+ ("B", "D", 1 / 3.0),
280
+ ("C", "D", 1 / 3.0),
281
+ ]
282
+ Panswer = nx.Graph()
283
+ Panswer.add_weighted_edges_from(edges)
284
+ P = bipartite.weighted_projected_graph(self.N, "ABCDE", ratio=True)
285
+ assert edges_equal(list(P.edges()), Panswer.edges())
286
+ for u, v in list(P.edges()):
287
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
288
+
289
+ def test_project_weighted_overlap(self):
290
+ edges = [
291
+ ("A", "B", 2 / 2.0),
292
+ ("A", "C", 1 / 1.0),
293
+ ("B", "C", 1 / 1.0),
294
+ ("B", "D", 1 / 1.0),
295
+ ("B", "E", 2 / 3.0),
296
+ ("E", "F", 1 / 1.0),
297
+ ]
298
+ Panswer = nx.Graph()
299
+ Panswer.add_weighted_edges_from(edges)
300
+ P = bipartite.overlap_weighted_projected_graph(self.G, "ABCDEF", jaccard=False)
301
+ assert edges_equal(list(P.edges()), Panswer.edges())
302
+ for u, v in list(P.edges()):
303
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
304
+
305
+ edges = [
306
+ ("A", "B", 3 / 3.0),
307
+ ("A", "E", 1 / 1.0),
308
+ ("A", "C", 1 / 1.0),
309
+ ("A", "D", 1 / 1.0),
310
+ ("B", "E", 1 / 1.0),
311
+ ("B", "C", 1 / 1.0),
312
+ ("B", "D", 1 / 1.0),
313
+ ("C", "D", 1 / 1.0),
314
+ ]
315
+ Panswer = nx.Graph()
316
+ Panswer.add_weighted_edges_from(edges)
317
+ P = bipartite.overlap_weighted_projected_graph(self.N, "ABCDE", jaccard=False)
318
+ assert edges_equal(list(P.edges()), Panswer.edges())
319
+ for u, v in list(P.edges()):
320
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
321
+
322
+ def test_project_weighted_jaccard(self):
323
+ edges = [
324
+ ("A", "B", 2 / 5.0),
325
+ ("A", "C", 1 / 2.0),
326
+ ("B", "C", 1 / 5.0),
327
+ ("B", "D", 1 / 5.0),
328
+ ("B", "E", 2 / 6.0),
329
+ ("E", "F", 1 / 3.0),
330
+ ]
331
+ Panswer = nx.Graph()
332
+ Panswer.add_weighted_edges_from(edges)
333
+ P = bipartite.overlap_weighted_projected_graph(self.G, "ABCDEF")
334
+ assert edges_equal(list(P.edges()), Panswer.edges())
335
+ for u, v in list(P.edges()):
336
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
337
+
338
+ edges = [
339
+ ("A", "B", 3 / 3.0),
340
+ ("A", "E", 1 / 3.0),
341
+ ("A", "C", 1 / 3.0),
342
+ ("A", "D", 1 / 3.0),
343
+ ("B", "E", 1 / 3.0),
344
+ ("B", "C", 1 / 3.0),
345
+ ("B", "D", 1 / 3.0),
346
+ ("C", "D", 1 / 1.0),
347
+ ]
348
+ Panswer = nx.Graph()
349
+ Panswer.add_weighted_edges_from(edges)
350
+ P = bipartite.overlap_weighted_projected_graph(self.N, "ABCDE")
351
+ assert edges_equal(list(P.edges()), Panswer.edges())
352
+ for u, v in P.edges():
353
+ assert P[u][v]["weight"] == Panswer[u][v]["weight"]
354
+
355
+ def test_generic_weighted_projected_graph_simple(self):
356
+ def shared(G, u, v):
357
+ return len(set(G[u]) & set(G[v]))
358
+
359
+ B = nx.path_graph(5)
360
+ G = bipartite.generic_weighted_projected_graph(
361
+ B, [0, 2, 4], weight_function=shared
362
+ )
363
+ assert nodes_equal(list(G), [0, 2, 4])
364
+ assert edges_equal(
365
+ list(G.edges(data=True)),
366
+ [(0, 2, {"weight": 1}), (2, 4, {"weight": 1})],
367
+ )
368
+
369
+ G = bipartite.generic_weighted_projected_graph(B, [0, 2, 4])
370
+ assert nodes_equal(list(G), [0, 2, 4])
371
+ assert edges_equal(
372
+ list(G.edges(data=True)),
373
+ [(0, 2, {"weight": 1}), (2, 4, {"weight": 1})],
374
+ )
375
+ B = nx.DiGraph()
376
+ nx.add_path(B, range(5))
377
+ G = bipartite.generic_weighted_projected_graph(B, [0, 2, 4])
378
+ assert nodes_equal(list(G), [0, 2, 4])
379
+ assert edges_equal(
380
+ list(G.edges(data=True)),
381
+ [(0, 2, {"weight": 1}), (2, 4, {"weight": 1})],
382
+ directed=True,
383
+ )
384
+
385
+ def test_generic_weighted_projected_graph_custom(self):
386
+ def jaccard(G, u, v):
387
+ unbrs = set(G[u])
388
+ vnbrs = set(G[v])
389
+ return len(unbrs & vnbrs) / len(unbrs | vnbrs)
390
+
391
+ def my_weight(G, u, v, weight="weight"):
392
+ w = 0
393
+ for nbr in set(G[u]) & set(G[v]):
394
+ w += G.edges[u, nbr].get(weight, 1) + G.edges[v, nbr].get(weight, 1)
395
+ return w
396
+
397
+ B = nx.bipartite.complete_bipartite_graph(2, 2)
398
+ for i, (u, v) in enumerate(B.edges()):
399
+ B.edges[u, v]["weight"] = i + 1
400
+ G = bipartite.generic_weighted_projected_graph(
401
+ B, [0, 1], weight_function=jaccard
402
+ )
403
+ assert edges_equal(list(G.edges(data=True)), [(0, 1, {"weight": 1.0})])
404
+ G = bipartite.generic_weighted_projected_graph(
405
+ B, [0, 1], weight_function=my_weight
406
+ )
407
+ assert edges_equal(list(G.edges(data=True)), [(0, 1, {"weight": 10})])
408
+ G = bipartite.generic_weighted_projected_graph(B, [0, 1])
409
+ assert edges_equal(list(G.edges(data=True)), [(0, 1, {"weight": 2})])
@@ -0,0 +1,35 @@
1
+ """Unit tests for the :mod:`networkx.algorithms.bipartite.redundancy` module."""
2
+
3
+ import pytest
4
+
5
+ from networkx import NetworkXError, cycle_graph
6
+ from networkx.algorithms.bipartite import complete_bipartite_graph, node_redundancy
7
+
8
+
9
+ def test_no_redundant_nodes():
10
+ G = complete_bipartite_graph(2, 2)
11
+
12
+ # when nodes is None
13
+ rc = node_redundancy(G)
14
+ assert all(redundancy == 1 for redundancy in rc.values())
15
+
16
+ # when set of nodes is specified
17
+ rc = node_redundancy(G, (2, 3))
18
+ assert rc == {2: 1.0, 3: 1.0}
19
+
20
+
21
+ def test_redundant_nodes():
22
+ G = cycle_graph(6)
23
+ edge = {0, 3}
24
+ G.add_edge(*edge)
25
+ redundancy = node_redundancy(G)
26
+ for v in edge:
27
+ assert redundancy[v] == 2 / 3
28
+ for v in set(G) - edge:
29
+ assert redundancy[v] == 1
30
+
31
+
32
+ def test_not_enough_neighbors():
33
+ with pytest.raises(NetworkXError):
34
+ G = complete_bipartite_graph(1, 2)
35
+ node_redundancy(G)
@@ -0,0 +1,80 @@
1
+ import pytest
2
+
3
+ pytest.importorskip("scipy")
4
+
5
+ import networkx as nx
6
+ from networkx.algorithms.bipartite import spectral_bipartivity as sb
7
+
8
+ # Examples from Figure 1
9
+ # E. Estrada and J. A. Rodríguez-Velázquez, "Spectral measures of
10
+ # bipartivity in complex networks", PhysRev E 72, 046105 (2005)
11
+
12
+
13
+ class TestSpectralBipartivity:
14
+ def test_star_like(self):
15
+ # star-like
16
+
17
+ G = nx.star_graph(2)
18
+ G.add_edge(1, 2)
19
+ assert sb(G) == pytest.approx(0.843, abs=1e-3)
20
+
21
+ G = nx.star_graph(3)
22
+ G.add_edge(1, 2)
23
+ assert sb(G) == pytest.approx(0.871, abs=1e-3)
24
+
25
+ G = nx.star_graph(4)
26
+ G.add_edge(1, 2)
27
+ assert sb(G) == pytest.approx(0.890, abs=1e-3)
28
+
29
+ def test_k23_like(self):
30
+ # K2,3-like
31
+ G = nx.complete_bipartite_graph(2, 3)
32
+ G.add_edge(0, 1)
33
+ assert sb(G) == pytest.approx(0.769, abs=1e-3)
34
+
35
+ G = nx.complete_bipartite_graph(2, 3)
36
+ G.add_edge(2, 4)
37
+ assert sb(G) == pytest.approx(0.829, abs=1e-3)
38
+
39
+ G = nx.complete_bipartite_graph(2, 3)
40
+ G.add_edge(2, 4)
41
+ G.add_edge(3, 4)
42
+ assert sb(G) == pytest.approx(0.731, abs=1e-3)
43
+
44
+ G = nx.complete_bipartite_graph(2, 3)
45
+ G.add_edge(0, 1)
46
+ G.add_edge(2, 4)
47
+ assert sb(G) == pytest.approx(0.692, abs=1e-3)
48
+
49
+ G = nx.complete_bipartite_graph(2, 3)
50
+ G.add_edge(2, 4)
51
+ G.add_edge(3, 4)
52
+ G.add_edge(0, 1)
53
+ assert sb(G) == pytest.approx(0.645, abs=1e-3)
54
+
55
+ G = nx.complete_bipartite_graph(2, 3)
56
+ G.add_edge(2, 4)
57
+ G.add_edge(3, 4)
58
+ G.add_edge(2, 3)
59
+ assert sb(G) == pytest.approx(0.645, abs=1e-3)
60
+
61
+ G = nx.complete_bipartite_graph(2, 3)
62
+ G.add_edge(2, 4)
63
+ G.add_edge(3, 4)
64
+ G.add_edge(2, 3)
65
+ G.add_edge(0, 1)
66
+ assert sb(G) == pytest.approx(0.597, abs=1e-3)
67
+
68
+ def test_single_nodes(self):
69
+ # single nodes
70
+ G = nx.complete_bipartite_graph(2, 3)
71
+ G.add_edge(2, 4)
72
+ sbn = sb(G, nodes=[1, 2])
73
+ assert sbn[1] == pytest.approx(0.85, abs=1e-2)
74
+ assert sbn[2] == pytest.approx(0.77, abs=1e-2)
75
+
76
+ G = nx.complete_bipartite_graph(2, 3)
77
+ G.add_edge(0, 1)
78
+ sbn = sb(G, nodes=[1, 2])
79
+ assert sbn[1] == pytest.approx(0.73, abs=1e-2)
80
+ assert sbn[2] == pytest.approx(0.82, abs=1e-2)
@@ -0,0 +1,168 @@
1
+ """Routines to find the boundary of a set of nodes.
2
+
3
+ An edge boundary is a set of edges, each of which has exactly one
4
+ endpoint in a given set of nodes (or, in the case of directed graphs,
5
+ the set of edges whose source node is in the set).
6
+
7
+ A node boundary of a set *S* of nodes is the set of (out-)neighbors of
8
+ nodes in *S* that are outside *S*.
9
+
10
+ """
11
+
12
+ from itertools import chain
13
+
14
+ import networkx as nx
15
+
16
+ __all__ = ["edge_boundary", "node_boundary"]
17
+
18
+
19
+ @nx._dispatchable(edge_attrs={"data": "default"}, preserve_edge_attrs="data")
20
+ def edge_boundary(G, nbunch1, nbunch2=None, data=False, keys=False, default=None):
21
+ """Returns the edge boundary of `nbunch1`.
22
+
23
+ The *edge boundary* of a set *S* with respect to a set *T* is the
24
+ set of edges (*u*, *v*) such that *u* is in *S* and *v* is in *T*.
25
+ If *T* is not specified, it is assumed to be the set of all nodes
26
+ not in *S*.
27
+
28
+ Parameters
29
+ ----------
30
+ G : NetworkX graph
31
+
32
+ nbunch1 : iterable
33
+ Iterable of nodes in the graph representing the set of nodes
34
+ whose edge boundary will be returned. (This is the set *S* from
35
+ the definition above.)
36
+
37
+ nbunch2 : iterable
38
+ Iterable of nodes representing the target (or "exterior") set of
39
+ nodes. (This is the set *T* from the definition above.) If not
40
+ specified, this is assumed to be the set of all nodes in `G`
41
+ not in `nbunch1`.
42
+
43
+ keys : bool
44
+ This parameter has the same meaning as in
45
+ :meth:`MultiGraph.edges`.
46
+
47
+ data : bool or object
48
+ This parameter has the same meaning as in
49
+ :meth:`MultiGraph.edges`.
50
+
51
+ default : object
52
+ This parameter has the same meaning as in
53
+ :meth:`MultiGraph.edges`.
54
+
55
+ Returns
56
+ -------
57
+ iterator
58
+ An iterator over the edges in the boundary of `nbunch1` with
59
+ respect to `nbunch2`. If `keys`, `data`, or `default`
60
+ are specified and `G` is a multigraph, then edges are returned
61
+ with keys and/or data, as in :meth:`MultiGraph.edges`.
62
+
63
+ Examples
64
+ --------
65
+ >>> G = nx.wheel_graph(6)
66
+
67
+ When nbunch2=None:
68
+
69
+ >>> list(nx.edge_boundary(G, (1, 3)))
70
+ [(1, 0), (1, 2), (1, 5), (3, 0), (3, 2), (3, 4)]
71
+
72
+ When nbunch2 is given:
73
+
74
+ >>> list(nx.edge_boundary(G, (1, 3), (2, 0)))
75
+ [(1, 0), (1, 2), (3, 0), (3, 2)]
76
+
77
+ Notes
78
+ -----
79
+ Any element of `nbunch` that is not in the graph `G` will be
80
+ ignored.
81
+
82
+ `nbunch1` and `nbunch2` are usually meant to be disjoint, but in
83
+ the interest of speed and generality, that is not required here.
84
+
85
+ """
86
+ nset1 = {n for n in nbunch1 if n in G}
87
+ # Here we create an iterator over edges incident to nodes in the set
88
+ # `nset1`. The `Graph.edges()` method does not provide a guarantee
89
+ # on the orientation of the edges, so our algorithm below must
90
+ # handle the case in which exactly one orientation, either (u, v) or
91
+ # (v, u), appears in this iterable.
92
+ if G.is_multigraph():
93
+ edges = G.edges(nset1, data=data, keys=keys, default=default)
94
+ else:
95
+ edges = G.edges(nset1, data=data, default=default)
96
+ # If `nbunch2` is not provided, then it is assumed to be the set
97
+ # complement of `nbunch1`. For the sake of efficiency, this is
98
+ # implemented by using the `not in` operator, instead of by creating
99
+ # an additional set and using the `in` operator.
100
+ if nbunch2 is None:
101
+ return (e for e in edges if (e[0] in nset1) ^ (e[1] in nset1))
102
+ nset2 = set(nbunch2)
103
+ return (
104
+ e
105
+ for e in edges
106
+ if (e[0] in nset1 and e[1] in nset2) or (e[1] in nset1 and e[0] in nset2)
107
+ )
108
+
109
+
110
+ @nx._dispatchable
111
+ def node_boundary(G, nbunch1, nbunch2=None):
112
+ """Returns the node boundary of `nbunch1`.
113
+
114
+ The *node boundary* of a set *S* with respect to a set *T* is the
115
+ set of nodes *v* in *T* such that for some *u* in *S*, there is an
116
+ edge joining *u* to *v*. If *T* is not specified, it is assumed to
117
+ be the set of all nodes not in *S*.
118
+
119
+ Parameters
120
+ ----------
121
+ G : NetworkX graph
122
+
123
+ nbunch1 : iterable
124
+ Iterable of nodes in the graph representing the set of nodes
125
+ whose node boundary will be returned. (This is the set *S* from
126
+ the definition above.)
127
+
128
+ nbunch2 : iterable
129
+ Iterable of nodes representing the target (or "exterior") set of
130
+ nodes. (This is the set *T* from the definition above.) If not
131
+ specified, this is assumed to be the set of all nodes in `G`
132
+ not in `nbunch1`.
133
+
134
+ Returns
135
+ -------
136
+ set
137
+ The node boundary of `nbunch1` with respect to `nbunch2`.
138
+
139
+ Examples
140
+ --------
141
+ >>> G = nx.wheel_graph(6)
142
+
143
+ When nbunch2=None:
144
+
145
+ >>> list(nx.node_boundary(G, (3, 4)))
146
+ [0, 2, 5]
147
+
148
+ When nbunch2 is given:
149
+
150
+ >>> list(nx.node_boundary(G, (3, 4), (0, 1, 5)))
151
+ [0, 5]
152
+
153
+ Notes
154
+ -----
155
+ Any element of `nbunch` that is not in the graph `G` will be
156
+ ignored.
157
+
158
+ `nbunch1` and `nbunch2` are usually meant to be disjoint, but in
159
+ the interest of speed and generality, that is not required here.
160
+
161
+ """
162
+ nset1 = {n for n in nbunch1 if n in G}
163
+ bdy = set(chain.from_iterable(G[v] for v in nset1)) - nset1
164
+ # If `nbunch2` is not specified, it is assumed to be the set
165
+ # complement of `nbunch1`.
166
+ if nbunch2 is not None:
167
+ bdy &= set(nbunch2)
168
+ return bdy