okstra 0.108.0 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
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"""
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Famous social networks.
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"""
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import networkx as nx
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__all__ = [
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"karate_club_graph",
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"davis_southern_women_graph",
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"florentine_families_graph",
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"les_miserables_graph",
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]
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@nx._dispatchable(graphs=None, returns_graph=True)
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def karate_club_graph():
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"""Returns Zachary's Karate Club graph.
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Each node in the returned graph has a node attribute 'club' that
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indicates the name of the club to which the member represented by that node
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belongs, either 'Mr. Hi' or 'Officer'. Each edge has a weight based on the
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number of contexts in which that edge's incident node members interacted.
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The dataset is derived from the 'Club After Split From Data' column of Table 3 in [1]_.
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This was in turn derived from the 'Club After Fission' column of Table 1 in the
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same paper. Note that the nodes are 0-indexed in NetworkX, but 1-indexed in the
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paper (the 'Individual Number in Matrix C' column of Table 3 starts at 1). This
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means, for example, that ``G.nodes[9]["club"]`` returns 'Officer', which
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corresponds to row 10 of Table 3 in the paper.
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Examples
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--------
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To get the name of the club to which a node belongs:
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>>> G = nx.karate_club_graph()
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>>> G.nodes[5]["club"]
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'Mr. Hi'
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>>> G.nodes[9]["club"]
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'Officer'
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References
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----------
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.. [1] Zachary, Wayne W.
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"An Information Flow Model for Conflict and Fission in Small Groups."
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*Journal of Anthropological Research*, 33, 452--473, (1977).
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"""
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# Create the set of all members, and the members of each club.
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all_members = set(range(34))
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club1 = {0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 16, 17, 19, 21}
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# club2 = all_members - club1
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G = nx.Graph()
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G.name = "Zachary's Karate Club"
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zacharydat = """\
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0 4 5 3 3 3 3 2 2 0 2 3 2 3 0 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0
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4 0 6 3 0 0 0 4 0 0 0 0 0 5 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 0 2 0 0 0
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5 6 0 3 0 0 0 4 5 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 3 0
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3 3 3 0 0 0 0 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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3 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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3 0 0 0 0 0 5 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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3 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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2 4 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 4 3
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0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
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2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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3 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4
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0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
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2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1
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2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 4 0 2 0 0 5 4
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 2 0 0
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 7 0 0
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2
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84
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0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 4
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85
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0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2
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0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 4 0 0 0 0 0 3 2
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87
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0 2 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
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2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 2 0 0 0 4 4
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0 0 2 0 0 0 0 0 3 0 0 0 0 0 3 3 0 0 1 0 3 0 2 5 0 0 0 0 0 4 3 4 0 5
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0 0 0 0 0 0 0 0 4 2 0 0 0 3 2 4 0 0 2 1 1 0 3 4 0 0 2 4 2 2 3 4 5 0"""
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for row, line in enumerate(zacharydat.split("\n")):
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thisrow = [int(b) for b in line.split()]
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for col, entry in enumerate(thisrow):
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if entry >= 1:
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G.add_edge(row, col, weight=entry)
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# Add the name of each member's club as a node attribute.
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for v in G:
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G.nodes[v]["club"] = "Mr. Hi" if v in club1 else "Officer"
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return G
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@nx._dispatchable(graphs=None, returns_graph=True)
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def davis_southern_women_graph():
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"""Returns Davis Southern women social network.
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This is a bipartite graph.
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References
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----------
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.. [1] A. Davis, Gardner, B. B., Gardner, M. R., 1941. Deep South.
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University of Chicago Press, Chicago, IL.
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"""
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G = nx.Graph()
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# Top nodes
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women = [
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"Evelyn Jefferson",
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"Laura Mandeville",
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"Theresa Anderson",
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"Brenda Rogers",
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"Charlotte McDowd",
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"Frances Anderson",
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"Eleanor Nye",
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|
+
"Pearl Oglethorpe",
|
|
126
|
+
"Ruth DeSand",
|
|
127
|
+
"Verne Sanderson",
|
|
128
|
+
"Myra Liddel",
|
|
129
|
+
"Katherina Rogers",
|
|
130
|
+
"Sylvia Avondale",
|
|
131
|
+
"Nora Fayette",
|
|
132
|
+
"Helen Lloyd",
|
|
133
|
+
"Dorothy Murchison",
|
|
134
|
+
"Olivia Carleton",
|
|
135
|
+
"Flora Price",
|
|
136
|
+
]
|
|
137
|
+
G.add_nodes_from(women, bipartite=0)
|
|
138
|
+
# Bottom nodes
|
|
139
|
+
events = [
|
|
140
|
+
"E1",
|
|
141
|
+
"E2",
|
|
142
|
+
"E3",
|
|
143
|
+
"E4",
|
|
144
|
+
"E5",
|
|
145
|
+
"E6",
|
|
146
|
+
"E7",
|
|
147
|
+
"E8",
|
|
148
|
+
"E9",
|
|
149
|
+
"E10",
|
|
150
|
+
"E11",
|
|
151
|
+
"E12",
|
|
152
|
+
"E13",
|
|
153
|
+
"E14",
|
|
154
|
+
]
|
|
155
|
+
G.add_nodes_from(events, bipartite=1)
|
|
156
|
+
|
|
157
|
+
G.add_edges_from(
|
|
158
|
+
[
|
|
159
|
+
("Evelyn Jefferson", "E1"),
|
|
160
|
+
("Evelyn Jefferson", "E2"),
|
|
161
|
+
("Evelyn Jefferson", "E3"),
|
|
162
|
+
("Evelyn Jefferson", "E4"),
|
|
163
|
+
("Evelyn Jefferson", "E5"),
|
|
164
|
+
("Evelyn Jefferson", "E6"),
|
|
165
|
+
("Evelyn Jefferson", "E8"),
|
|
166
|
+
("Evelyn Jefferson", "E9"),
|
|
167
|
+
("Laura Mandeville", "E1"),
|
|
168
|
+
("Laura Mandeville", "E2"),
|
|
169
|
+
("Laura Mandeville", "E3"),
|
|
170
|
+
("Laura Mandeville", "E5"),
|
|
171
|
+
("Laura Mandeville", "E6"),
|
|
172
|
+
("Laura Mandeville", "E7"),
|
|
173
|
+
("Laura Mandeville", "E8"),
|
|
174
|
+
("Theresa Anderson", "E2"),
|
|
175
|
+
("Theresa Anderson", "E3"),
|
|
176
|
+
("Theresa Anderson", "E4"),
|
|
177
|
+
("Theresa Anderson", "E5"),
|
|
178
|
+
("Theresa Anderson", "E6"),
|
|
179
|
+
("Theresa Anderson", "E7"),
|
|
180
|
+
("Theresa Anderson", "E8"),
|
|
181
|
+
("Theresa Anderson", "E9"),
|
|
182
|
+
("Brenda Rogers", "E1"),
|
|
183
|
+
("Brenda Rogers", "E3"),
|
|
184
|
+
("Brenda Rogers", "E4"),
|
|
185
|
+
("Brenda Rogers", "E5"),
|
|
186
|
+
("Brenda Rogers", "E6"),
|
|
187
|
+
("Brenda Rogers", "E7"),
|
|
188
|
+
("Brenda Rogers", "E8"),
|
|
189
|
+
("Charlotte McDowd", "E3"),
|
|
190
|
+
("Charlotte McDowd", "E4"),
|
|
191
|
+
("Charlotte McDowd", "E5"),
|
|
192
|
+
("Charlotte McDowd", "E7"),
|
|
193
|
+
("Frances Anderson", "E3"),
|
|
194
|
+
("Frances Anderson", "E5"),
|
|
195
|
+
("Frances Anderson", "E6"),
|
|
196
|
+
("Frances Anderson", "E8"),
|
|
197
|
+
("Eleanor Nye", "E5"),
|
|
198
|
+
("Eleanor Nye", "E6"),
|
|
199
|
+
("Eleanor Nye", "E7"),
|
|
200
|
+
("Eleanor Nye", "E8"),
|
|
201
|
+
("Pearl Oglethorpe", "E6"),
|
|
202
|
+
("Pearl Oglethorpe", "E8"),
|
|
203
|
+
("Pearl Oglethorpe", "E9"),
|
|
204
|
+
("Ruth DeSand", "E5"),
|
|
205
|
+
("Ruth DeSand", "E7"),
|
|
206
|
+
("Ruth DeSand", "E8"),
|
|
207
|
+
("Ruth DeSand", "E9"),
|
|
208
|
+
("Verne Sanderson", "E7"),
|
|
209
|
+
("Verne Sanderson", "E8"),
|
|
210
|
+
("Verne Sanderson", "E9"),
|
|
211
|
+
("Verne Sanderson", "E12"),
|
|
212
|
+
("Myra Liddel", "E8"),
|
|
213
|
+
("Myra Liddel", "E9"),
|
|
214
|
+
("Myra Liddel", "E10"),
|
|
215
|
+
("Myra Liddel", "E12"),
|
|
216
|
+
("Katherina Rogers", "E8"),
|
|
217
|
+
("Katherina Rogers", "E9"),
|
|
218
|
+
("Katherina Rogers", "E10"),
|
|
219
|
+
("Katherina Rogers", "E12"),
|
|
220
|
+
("Katherina Rogers", "E13"),
|
|
221
|
+
("Katherina Rogers", "E14"),
|
|
222
|
+
("Sylvia Avondale", "E7"),
|
|
223
|
+
("Sylvia Avondale", "E8"),
|
|
224
|
+
("Sylvia Avondale", "E9"),
|
|
225
|
+
("Sylvia Avondale", "E10"),
|
|
226
|
+
("Sylvia Avondale", "E12"),
|
|
227
|
+
("Sylvia Avondale", "E13"),
|
|
228
|
+
("Sylvia Avondale", "E14"),
|
|
229
|
+
("Nora Fayette", "E6"),
|
|
230
|
+
("Nora Fayette", "E7"),
|
|
231
|
+
("Nora Fayette", "E9"),
|
|
232
|
+
("Nora Fayette", "E10"),
|
|
233
|
+
("Nora Fayette", "E11"),
|
|
234
|
+
("Nora Fayette", "E12"),
|
|
235
|
+
("Nora Fayette", "E13"),
|
|
236
|
+
("Nora Fayette", "E14"),
|
|
237
|
+
("Helen Lloyd", "E7"),
|
|
238
|
+
("Helen Lloyd", "E8"),
|
|
239
|
+
("Helen Lloyd", "E10"),
|
|
240
|
+
("Helen Lloyd", "E11"),
|
|
241
|
+
("Helen Lloyd", "E12"),
|
|
242
|
+
("Dorothy Murchison", "E8"),
|
|
243
|
+
("Dorothy Murchison", "E9"),
|
|
244
|
+
("Olivia Carleton", "E9"),
|
|
245
|
+
("Olivia Carleton", "E11"),
|
|
246
|
+
("Flora Price", "E9"),
|
|
247
|
+
("Flora Price", "E11"),
|
|
248
|
+
]
|
|
249
|
+
)
|
|
250
|
+
G.graph["top"] = women
|
|
251
|
+
G.graph["bottom"] = events
|
|
252
|
+
return G
|
|
253
|
+
|
|
254
|
+
|
|
255
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
256
|
+
def florentine_families_graph():
|
|
257
|
+
"""Returns Florentine families graph.
|
|
258
|
+
|
|
259
|
+
References
|
|
260
|
+
----------
|
|
261
|
+
.. [1] Ronald L. Breiger and Philippa E. Pattison
|
|
262
|
+
Cumulated social roles: The duality of persons and their algebras,1
|
|
263
|
+
Social Networks, Volume 8, Issue 3, September 1986, Pages 215-256
|
|
264
|
+
"""
|
|
265
|
+
G = nx.Graph()
|
|
266
|
+
G.add_edge("Acciaiuoli", "Medici")
|
|
267
|
+
G.add_edge("Castellani", "Peruzzi")
|
|
268
|
+
G.add_edge("Castellani", "Strozzi")
|
|
269
|
+
G.add_edge("Castellani", "Barbadori")
|
|
270
|
+
G.add_edge("Medici", "Barbadori")
|
|
271
|
+
G.add_edge("Medici", "Ridolfi")
|
|
272
|
+
G.add_edge("Medici", "Tornabuoni")
|
|
273
|
+
G.add_edge("Medici", "Albizzi")
|
|
274
|
+
G.add_edge("Medici", "Salviati")
|
|
275
|
+
G.add_edge("Salviati", "Pazzi")
|
|
276
|
+
G.add_edge("Peruzzi", "Strozzi")
|
|
277
|
+
G.add_edge("Peruzzi", "Bischeri")
|
|
278
|
+
G.add_edge("Strozzi", "Ridolfi")
|
|
279
|
+
G.add_edge("Strozzi", "Bischeri")
|
|
280
|
+
G.add_edge("Ridolfi", "Tornabuoni")
|
|
281
|
+
G.add_edge("Tornabuoni", "Guadagni")
|
|
282
|
+
G.add_edge("Albizzi", "Ginori")
|
|
283
|
+
G.add_edge("Albizzi", "Guadagni")
|
|
284
|
+
G.add_edge("Bischeri", "Guadagni")
|
|
285
|
+
G.add_edge("Guadagni", "Lamberteschi")
|
|
286
|
+
return G
|
|
287
|
+
|
|
288
|
+
|
|
289
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
290
|
+
def les_miserables_graph():
|
|
291
|
+
"""Returns coappearance network of characters in the novel Les Miserables.
|
|
292
|
+
|
|
293
|
+
References
|
|
294
|
+
----------
|
|
295
|
+
.. [1] D. E. Knuth, 1993.
|
|
296
|
+
The Stanford GraphBase: a platform for combinatorial computing,
|
|
297
|
+
pp. 74-87. New York: AcM Press.
|
|
298
|
+
"""
|
|
299
|
+
G = nx.Graph()
|
|
300
|
+
G.add_edge("Napoleon", "Myriel", weight=1)
|
|
301
|
+
G.add_edge("MlleBaptistine", "Myriel", weight=8)
|
|
302
|
+
G.add_edge("MmeMagloire", "Myriel", weight=10)
|
|
303
|
+
G.add_edge("MmeMagloire", "MlleBaptistine", weight=6)
|
|
304
|
+
G.add_edge("CountessDeLo", "Myriel", weight=1)
|
|
305
|
+
G.add_edge("Geborand", "Myriel", weight=1)
|
|
306
|
+
G.add_edge("Champtercier", "Myriel", weight=1)
|
|
307
|
+
G.add_edge("Cravatte", "Myriel", weight=1)
|
|
308
|
+
G.add_edge("Count", "Myriel", weight=2)
|
|
309
|
+
G.add_edge("OldMan", "Myriel", weight=1)
|
|
310
|
+
G.add_edge("Valjean", "Labarre", weight=1)
|
|
311
|
+
G.add_edge("Valjean", "MmeMagloire", weight=3)
|
|
312
|
+
G.add_edge("Valjean", "MlleBaptistine", weight=3)
|
|
313
|
+
G.add_edge("Valjean", "Myriel", weight=5)
|
|
314
|
+
G.add_edge("Marguerite", "Valjean", weight=1)
|
|
315
|
+
G.add_edge("MmeDeR", "Valjean", weight=1)
|
|
316
|
+
G.add_edge("Isabeau", "Valjean", weight=1)
|
|
317
|
+
G.add_edge("Gervais", "Valjean", weight=1)
|
|
318
|
+
G.add_edge("Listolier", "Tholomyes", weight=4)
|
|
319
|
+
G.add_edge("Fameuil", "Tholomyes", weight=4)
|
|
320
|
+
G.add_edge("Fameuil", "Listolier", weight=4)
|
|
321
|
+
G.add_edge("Blacheville", "Tholomyes", weight=4)
|
|
322
|
+
G.add_edge("Blacheville", "Listolier", weight=4)
|
|
323
|
+
G.add_edge("Blacheville", "Fameuil", weight=4)
|
|
324
|
+
G.add_edge("Favourite", "Tholomyes", weight=3)
|
|
325
|
+
G.add_edge("Favourite", "Listolier", weight=3)
|
|
326
|
+
G.add_edge("Favourite", "Fameuil", weight=3)
|
|
327
|
+
G.add_edge("Favourite", "Blacheville", weight=4)
|
|
328
|
+
G.add_edge("Dahlia", "Tholomyes", weight=3)
|
|
329
|
+
G.add_edge("Dahlia", "Listolier", weight=3)
|
|
330
|
+
G.add_edge("Dahlia", "Fameuil", weight=3)
|
|
331
|
+
G.add_edge("Dahlia", "Blacheville", weight=3)
|
|
332
|
+
G.add_edge("Dahlia", "Favourite", weight=5)
|
|
333
|
+
G.add_edge("Zephine", "Tholomyes", weight=3)
|
|
334
|
+
G.add_edge("Zephine", "Listolier", weight=3)
|
|
335
|
+
G.add_edge("Zephine", "Fameuil", weight=3)
|
|
336
|
+
G.add_edge("Zephine", "Blacheville", weight=3)
|
|
337
|
+
G.add_edge("Zephine", "Favourite", weight=4)
|
|
338
|
+
G.add_edge("Zephine", "Dahlia", weight=4)
|
|
339
|
+
G.add_edge("Fantine", "Tholomyes", weight=3)
|
|
340
|
+
G.add_edge("Fantine", "Listolier", weight=3)
|
|
341
|
+
G.add_edge("Fantine", "Fameuil", weight=3)
|
|
342
|
+
G.add_edge("Fantine", "Blacheville", weight=3)
|
|
343
|
+
G.add_edge("Fantine", "Favourite", weight=4)
|
|
344
|
+
G.add_edge("Fantine", "Dahlia", weight=4)
|
|
345
|
+
G.add_edge("Fantine", "Zephine", weight=4)
|
|
346
|
+
G.add_edge("Fantine", "Marguerite", weight=2)
|
|
347
|
+
G.add_edge("Fantine", "Valjean", weight=9)
|
|
348
|
+
G.add_edge("MmeThenardier", "Fantine", weight=2)
|
|
349
|
+
G.add_edge("MmeThenardier", "Valjean", weight=7)
|
|
350
|
+
G.add_edge("Thenardier", "MmeThenardier", weight=13)
|
|
351
|
+
G.add_edge("Thenardier", "Fantine", weight=1)
|
|
352
|
+
G.add_edge("Thenardier", "Valjean", weight=12)
|
|
353
|
+
G.add_edge("Cosette", "MmeThenardier", weight=4)
|
|
354
|
+
G.add_edge("Cosette", "Valjean", weight=31)
|
|
355
|
+
G.add_edge("Cosette", "Tholomyes", weight=1)
|
|
356
|
+
G.add_edge("Cosette", "Thenardier", weight=1)
|
|
357
|
+
G.add_edge("Javert", "Valjean", weight=17)
|
|
358
|
+
G.add_edge("Javert", "Fantine", weight=5)
|
|
359
|
+
G.add_edge("Javert", "Thenardier", weight=5)
|
|
360
|
+
G.add_edge("Javert", "MmeThenardier", weight=1)
|
|
361
|
+
G.add_edge("Javert", "Cosette", weight=1)
|
|
362
|
+
G.add_edge("Fauchelevent", "Valjean", weight=8)
|
|
363
|
+
G.add_edge("Fauchelevent", "Javert", weight=1)
|
|
364
|
+
G.add_edge("Bamatabois", "Fantine", weight=1)
|
|
365
|
+
G.add_edge("Bamatabois", "Javert", weight=1)
|
|
366
|
+
G.add_edge("Bamatabois", "Valjean", weight=2)
|
|
367
|
+
G.add_edge("Perpetue", "Fantine", weight=1)
|
|
368
|
+
G.add_edge("Simplice", "Perpetue", weight=2)
|
|
369
|
+
G.add_edge("Simplice", "Valjean", weight=3)
|
|
370
|
+
G.add_edge("Simplice", "Fantine", weight=2)
|
|
371
|
+
G.add_edge("Simplice", "Javert", weight=1)
|
|
372
|
+
G.add_edge("Scaufflaire", "Valjean", weight=1)
|
|
373
|
+
G.add_edge("Woman1", "Valjean", weight=2)
|
|
374
|
+
G.add_edge("Woman1", "Javert", weight=1)
|
|
375
|
+
G.add_edge("Judge", "Valjean", weight=3)
|
|
376
|
+
G.add_edge("Judge", "Bamatabois", weight=2)
|
|
377
|
+
G.add_edge("Champmathieu", "Valjean", weight=3)
|
|
378
|
+
G.add_edge("Champmathieu", "Judge", weight=3)
|
|
379
|
+
G.add_edge("Champmathieu", "Bamatabois", weight=2)
|
|
380
|
+
G.add_edge("Brevet", "Judge", weight=2)
|
|
381
|
+
G.add_edge("Brevet", "Champmathieu", weight=2)
|
|
382
|
+
G.add_edge("Brevet", "Valjean", weight=2)
|
|
383
|
+
G.add_edge("Brevet", "Bamatabois", weight=1)
|
|
384
|
+
G.add_edge("Chenildieu", "Judge", weight=2)
|
|
385
|
+
G.add_edge("Chenildieu", "Champmathieu", weight=2)
|
|
386
|
+
G.add_edge("Chenildieu", "Brevet", weight=2)
|
|
387
|
+
G.add_edge("Chenildieu", "Valjean", weight=2)
|
|
388
|
+
G.add_edge("Chenildieu", "Bamatabois", weight=1)
|
|
389
|
+
G.add_edge("Cochepaille", "Judge", weight=2)
|
|
390
|
+
G.add_edge("Cochepaille", "Champmathieu", weight=2)
|
|
391
|
+
G.add_edge("Cochepaille", "Brevet", weight=2)
|
|
392
|
+
G.add_edge("Cochepaille", "Chenildieu", weight=2)
|
|
393
|
+
G.add_edge("Cochepaille", "Valjean", weight=2)
|
|
394
|
+
G.add_edge("Cochepaille", "Bamatabois", weight=1)
|
|
395
|
+
G.add_edge("Pontmercy", "Thenardier", weight=1)
|
|
396
|
+
G.add_edge("Boulatruelle", "Thenardier", weight=1)
|
|
397
|
+
G.add_edge("Eponine", "MmeThenardier", weight=2)
|
|
398
|
+
G.add_edge("Eponine", "Thenardier", weight=3)
|
|
399
|
+
G.add_edge("Anzelma", "Eponine", weight=2)
|
|
400
|
+
G.add_edge("Anzelma", "Thenardier", weight=2)
|
|
401
|
+
G.add_edge("Anzelma", "MmeThenardier", weight=1)
|
|
402
|
+
G.add_edge("Woman2", "Valjean", weight=3)
|
|
403
|
+
G.add_edge("Woman2", "Cosette", weight=1)
|
|
404
|
+
G.add_edge("Woman2", "Javert", weight=1)
|
|
405
|
+
G.add_edge("MotherInnocent", "Fauchelevent", weight=3)
|
|
406
|
+
G.add_edge("MotherInnocent", "Valjean", weight=1)
|
|
407
|
+
G.add_edge("Gribier", "Fauchelevent", weight=2)
|
|
408
|
+
G.add_edge("MmeBurgon", "Jondrette", weight=1)
|
|
409
|
+
G.add_edge("Gavroche", "MmeBurgon", weight=2)
|
|
410
|
+
G.add_edge("Gavroche", "Thenardier", weight=1)
|
|
411
|
+
G.add_edge("Gavroche", "Javert", weight=1)
|
|
412
|
+
G.add_edge("Gavroche", "Valjean", weight=1)
|
|
413
|
+
G.add_edge("Gillenormand", "Cosette", weight=3)
|
|
414
|
+
G.add_edge("Gillenormand", "Valjean", weight=2)
|
|
415
|
+
G.add_edge("Magnon", "Gillenormand", weight=1)
|
|
416
|
+
G.add_edge("Magnon", "MmeThenardier", weight=1)
|
|
417
|
+
G.add_edge("MlleGillenormand", "Gillenormand", weight=9)
|
|
418
|
+
G.add_edge("MlleGillenormand", "Cosette", weight=2)
|
|
419
|
+
G.add_edge("MlleGillenormand", "Valjean", weight=2)
|
|
420
|
+
G.add_edge("MmePontmercy", "MlleGillenormand", weight=1)
|
|
421
|
+
G.add_edge("MmePontmercy", "Pontmercy", weight=1)
|
|
422
|
+
G.add_edge("MlleVaubois", "MlleGillenormand", weight=1)
|
|
423
|
+
G.add_edge("LtGillenormand", "MlleGillenormand", weight=2)
|
|
424
|
+
G.add_edge("LtGillenormand", "Gillenormand", weight=1)
|
|
425
|
+
G.add_edge("LtGillenormand", "Cosette", weight=1)
|
|
426
|
+
G.add_edge("Marius", "MlleGillenormand", weight=6)
|
|
427
|
+
G.add_edge("Marius", "Gillenormand", weight=12)
|
|
428
|
+
G.add_edge("Marius", "Pontmercy", weight=1)
|
|
429
|
+
G.add_edge("Marius", "LtGillenormand", weight=1)
|
|
430
|
+
G.add_edge("Marius", "Cosette", weight=21)
|
|
431
|
+
G.add_edge("Marius", "Valjean", weight=19)
|
|
432
|
+
G.add_edge("Marius", "Tholomyes", weight=1)
|
|
433
|
+
G.add_edge("Marius", "Thenardier", weight=2)
|
|
434
|
+
G.add_edge("Marius", "Eponine", weight=5)
|
|
435
|
+
G.add_edge("Marius", "Gavroche", weight=4)
|
|
436
|
+
G.add_edge("BaronessT", "Gillenormand", weight=1)
|
|
437
|
+
G.add_edge("BaronessT", "Marius", weight=1)
|
|
438
|
+
G.add_edge("Mabeuf", "Marius", weight=1)
|
|
439
|
+
G.add_edge("Mabeuf", "Eponine", weight=1)
|
|
440
|
+
G.add_edge("Mabeuf", "Gavroche", weight=1)
|
|
441
|
+
G.add_edge("Enjolras", "Marius", weight=7)
|
|
442
|
+
G.add_edge("Enjolras", "Gavroche", weight=7)
|
|
443
|
+
G.add_edge("Enjolras", "Javert", weight=6)
|
|
444
|
+
G.add_edge("Enjolras", "Mabeuf", weight=1)
|
|
445
|
+
G.add_edge("Enjolras", "Valjean", weight=4)
|
|
446
|
+
G.add_edge("Combeferre", "Enjolras", weight=15)
|
|
447
|
+
G.add_edge("Combeferre", "Marius", weight=5)
|
|
448
|
+
G.add_edge("Combeferre", "Gavroche", weight=6)
|
|
449
|
+
G.add_edge("Combeferre", "Mabeuf", weight=2)
|
|
450
|
+
G.add_edge("Prouvaire", "Gavroche", weight=1)
|
|
451
|
+
G.add_edge("Prouvaire", "Enjolras", weight=4)
|
|
452
|
+
G.add_edge("Prouvaire", "Combeferre", weight=2)
|
|
453
|
+
G.add_edge("Feuilly", "Gavroche", weight=2)
|
|
454
|
+
G.add_edge("Feuilly", "Enjolras", weight=6)
|
|
455
|
+
G.add_edge("Feuilly", "Prouvaire", weight=2)
|
|
456
|
+
G.add_edge("Feuilly", "Combeferre", weight=5)
|
|
457
|
+
G.add_edge("Feuilly", "Mabeuf", weight=1)
|
|
458
|
+
G.add_edge("Feuilly", "Marius", weight=1)
|
|
459
|
+
G.add_edge("Courfeyrac", "Marius", weight=9)
|
|
460
|
+
G.add_edge("Courfeyrac", "Enjolras", weight=17)
|
|
461
|
+
G.add_edge("Courfeyrac", "Combeferre", weight=13)
|
|
462
|
+
G.add_edge("Courfeyrac", "Gavroche", weight=7)
|
|
463
|
+
G.add_edge("Courfeyrac", "Mabeuf", weight=2)
|
|
464
|
+
G.add_edge("Courfeyrac", "Eponine", weight=1)
|
|
465
|
+
G.add_edge("Courfeyrac", "Feuilly", weight=6)
|
|
466
|
+
G.add_edge("Courfeyrac", "Prouvaire", weight=3)
|
|
467
|
+
G.add_edge("Bahorel", "Combeferre", weight=5)
|
|
468
|
+
G.add_edge("Bahorel", "Gavroche", weight=5)
|
|
469
|
+
G.add_edge("Bahorel", "Courfeyrac", weight=6)
|
|
470
|
+
G.add_edge("Bahorel", "Mabeuf", weight=2)
|
|
471
|
+
G.add_edge("Bahorel", "Enjolras", weight=4)
|
|
472
|
+
G.add_edge("Bahorel", "Feuilly", weight=3)
|
|
473
|
+
G.add_edge("Bahorel", "Prouvaire", weight=2)
|
|
474
|
+
G.add_edge("Bahorel", "Marius", weight=1)
|
|
475
|
+
G.add_edge("Bossuet", "Marius", weight=5)
|
|
476
|
+
G.add_edge("Bossuet", "Courfeyrac", weight=12)
|
|
477
|
+
G.add_edge("Bossuet", "Gavroche", weight=5)
|
|
478
|
+
G.add_edge("Bossuet", "Bahorel", weight=4)
|
|
479
|
+
G.add_edge("Bossuet", "Enjolras", weight=10)
|
|
480
|
+
G.add_edge("Bossuet", "Feuilly", weight=6)
|
|
481
|
+
G.add_edge("Bossuet", "Prouvaire", weight=2)
|
|
482
|
+
G.add_edge("Bossuet", "Combeferre", weight=9)
|
|
483
|
+
G.add_edge("Bossuet", "Mabeuf", weight=1)
|
|
484
|
+
G.add_edge("Bossuet", "Valjean", weight=1)
|
|
485
|
+
G.add_edge("Joly", "Bahorel", weight=5)
|
|
486
|
+
G.add_edge("Joly", "Bossuet", weight=7)
|
|
487
|
+
G.add_edge("Joly", "Gavroche", weight=3)
|
|
488
|
+
G.add_edge("Joly", "Courfeyrac", weight=5)
|
|
489
|
+
G.add_edge("Joly", "Enjolras", weight=5)
|
|
490
|
+
G.add_edge("Joly", "Feuilly", weight=5)
|
|
491
|
+
G.add_edge("Joly", "Prouvaire", weight=2)
|
|
492
|
+
G.add_edge("Joly", "Combeferre", weight=5)
|
|
493
|
+
G.add_edge("Joly", "Mabeuf", weight=1)
|
|
494
|
+
G.add_edge("Joly", "Marius", weight=2)
|
|
495
|
+
G.add_edge("Grantaire", "Bossuet", weight=3)
|
|
496
|
+
G.add_edge("Grantaire", "Enjolras", weight=3)
|
|
497
|
+
G.add_edge("Grantaire", "Combeferre", weight=1)
|
|
498
|
+
G.add_edge("Grantaire", "Courfeyrac", weight=2)
|
|
499
|
+
G.add_edge("Grantaire", "Joly", weight=2)
|
|
500
|
+
G.add_edge("Grantaire", "Gavroche", weight=1)
|
|
501
|
+
G.add_edge("Grantaire", "Bahorel", weight=1)
|
|
502
|
+
G.add_edge("Grantaire", "Feuilly", weight=1)
|
|
503
|
+
G.add_edge("Grantaire", "Prouvaire", weight=1)
|
|
504
|
+
G.add_edge("MotherPlutarch", "Mabeuf", weight=3)
|
|
505
|
+
G.add_edge("Gueulemer", "Thenardier", weight=5)
|
|
506
|
+
G.add_edge("Gueulemer", "Valjean", weight=1)
|
|
507
|
+
G.add_edge("Gueulemer", "MmeThenardier", weight=1)
|
|
508
|
+
G.add_edge("Gueulemer", "Javert", weight=1)
|
|
509
|
+
G.add_edge("Gueulemer", "Gavroche", weight=1)
|
|
510
|
+
G.add_edge("Gueulemer", "Eponine", weight=1)
|
|
511
|
+
G.add_edge("Babet", "Thenardier", weight=6)
|
|
512
|
+
G.add_edge("Babet", "Gueulemer", weight=6)
|
|
513
|
+
G.add_edge("Babet", "Valjean", weight=1)
|
|
514
|
+
G.add_edge("Babet", "MmeThenardier", weight=1)
|
|
515
|
+
G.add_edge("Babet", "Javert", weight=2)
|
|
516
|
+
G.add_edge("Babet", "Gavroche", weight=1)
|
|
517
|
+
G.add_edge("Babet", "Eponine", weight=1)
|
|
518
|
+
G.add_edge("Claquesous", "Thenardier", weight=4)
|
|
519
|
+
G.add_edge("Claquesous", "Babet", weight=4)
|
|
520
|
+
G.add_edge("Claquesous", "Gueulemer", weight=4)
|
|
521
|
+
G.add_edge("Claquesous", "Valjean", weight=1)
|
|
522
|
+
G.add_edge("Claquesous", "MmeThenardier", weight=1)
|
|
523
|
+
G.add_edge("Claquesous", "Javert", weight=1)
|
|
524
|
+
G.add_edge("Claquesous", "Eponine", weight=1)
|
|
525
|
+
G.add_edge("Claquesous", "Enjolras", weight=1)
|
|
526
|
+
G.add_edge("Montparnasse", "Javert", weight=1)
|
|
527
|
+
G.add_edge("Montparnasse", "Babet", weight=2)
|
|
528
|
+
G.add_edge("Montparnasse", "Gueulemer", weight=2)
|
|
529
|
+
G.add_edge("Montparnasse", "Claquesous", weight=2)
|
|
530
|
+
G.add_edge("Montparnasse", "Valjean", weight=1)
|
|
531
|
+
G.add_edge("Montparnasse", "Gavroche", weight=1)
|
|
532
|
+
G.add_edge("Montparnasse", "Eponine", weight=1)
|
|
533
|
+
G.add_edge("Montparnasse", "Thenardier", weight=1)
|
|
534
|
+
G.add_edge("Toussaint", "Cosette", weight=2)
|
|
535
|
+
G.add_edge("Toussaint", "Javert", weight=1)
|
|
536
|
+
G.add_edge("Toussaint", "Valjean", weight=1)
|
|
537
|
+
G.add_edge("Child1", "Gavroche", weight=2)
|
|
538
|
+
G.add_edge("Child2", "Gavroche", weight=2)
|
|
539
|
+
G.add_edge("Child2", "Child1", weight=3)
|
|
540
|
+
G.add_edge("Brujon", "Babet", weight=3)
|
|
541
|
+
G.add_edge("Brujon", "Gueulemer", weight=3)
|
|
542
|
+
G.add_edge("Brujon", "Thenardier", weight=3)
|
|
543
|
+
G.add_edge("Brujon", "Gavroche", weight=1)
|
|
544
|
+
G.add_edge("Brujon", "Eponine", weight=1)
|
|
545
|
+
G.add_edge("Brujon", "Claquesous", weight=1)
|
|
546
|
+
G.add_edge("Brujon", "Montparnasse", weight=1)
|
|
547
|
+
G.add_edge("MmeHucheloup", "Bossuet", weight=1)
|
|
548
|
+
G.add_edge("MmeHucheloup", "Joly", weight=1)
|
|
549
|
+
G.add_edge("MmeHucheloup", "Grantaire", weight=1)
|
|
550
|
+
G.add_edge("MmeHucheloup", "Bahorel", weight=1)
|
|
551
|
+
G.add_edge("MmeHucheloup", "Courfeyrac", weight=1)
|
|
552
|
+
G.add_edge("MmeHucheloup", "Gavroche", weight=1)
|
|
553
|
+
G.add_edge("MmeHucheloup", "Enjolras", weight=1)
|
|
554
|
+
return G
|
|
@@ -0,0 +1,120 @@
|
|
|
1
|
+
"""Generates graphs with a given eigenvector structure"""
|
|
2
|
+
|
|
3
|
+
import networkx as nx
|
|
4
|
+
from networkx.utils import np_random_state
|
|
5
|
+
|
|
6
|
+
__all__ = ["spectral_graph_forge"]
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
@np_random_state(3)
|
|
10
|
+
@nx._dispatchable(preserve_edge_attrs={"G": {"weight": 1}}, returns_graph=True)
|
|
11
|
+
def spectral_graph_forge(G, alpha, transformation="identity", seed=None):
|
|
12
|
+
"""Returns a random simple graph with spectrum resembling that of `G`
|
|
13
|
+
|
|
14
|
+
This algorithm, called Spectral Graph Forge (SGF), computes the
|
|
15
|
+
eigenvectors of a given graph adjacency matrix, filters them and
|
|
16
|
+
builds a random graph with a similar eigenstructure.
|
|
17
|
+
SGF has been proved to be particularly useful for synthesizing
|
|
18
|
+
realistic social networks and it can also be used to anonymize
|
|
19
|
+
graph sensitive data.
|
|
20
|
+
|
|
21
|
+
Parameters
|
|
22
|
+
----------
|
|
23
|
+
G : Graph
|
|
24
|
+
alpha : float
|
|
25
|
+
Ratio representing the percentage of eigenvectors of G to consider,
|
|
26
|
+
values in [0,1].
|
|
27
|
+
transformation : string, optional
|
|
28
|
+
Represents the intended matrix linear transformation, possible values
|
|
29
|
+
are 'identity' and 'modularity'
|
|
30
|
+
seed : integer, random_state, or None (default)
|
|
31
|
+
Indicator of numpy random number generation state.
|
|
32
|
+
See :ref:`Randomness<randomness>`.
|
|
33
|
+
|
|
34
|
+
Returns
|
|
35
|
+
-------
|
|
36
|
+
H : Graph
|
|
37
|
+
A graph with a similar eigenvector structure of the input one.
|
|
38
|
+
|
|
39
|
+
Raises
|
|
40
|
+
------
|
|
41
|
+
NetworkXError
|
|
42
|
+
If transformation has a value different from 'identity' or 'modularity'
|
|
43
|
+
|
|
44
|
+
Notes
|
|
45
|
+
-----
|
|
46
|
+
Spectral Graph Forge (SGF) generates a random simple graph resembling the
|
|
47
|
+
global properties of the given one.
|
|
48
|
+
It leverages the low-rank approximation of the associated adjacency matrix
|
|
49
|
+
driven by the *alpha* precision parameter.
|
|
50
|
+
SGF preserves the number of nodes of the input graph and their ordering.
|
|
51
|
+
This way, nodes of output graphs resemble the properties of the input one
|
|
52
|
+
and attributes can be directly mapped.
|
|
53
|
+
|
|
54
|
+
It considers the graph adjacency matrices which can optionally be
|
|
55
|
+
transformed to other symmetric real matrices (currently transformation
|
|
56
|
+
options include *identity* and *modularity*).
|
|
57
|
+
The *modularity* transformation, in the sense of Newman's modularity matrix
|
|
58
|
+
allows the focusing on community structure related properties of the graph.
|
|
59
|
+
|
|
60
|
+
SGF applies a low-rank approximation whose fixed rank is computed from the
|
|
61
|
+
ratio *alpha* of the input graph adjacency matrix dimension.
|
|
62
|
+
This step performs a filtering on the input eigenvectors similar to the low
|
|
63
|
+
pass filtering common in telecommunications.
|
|
64
|
+
|
|
65
|
+
The filtered values (after truncation) are used as input to a Bernoulli
|
|
66
|
+
sampling for constructing a random adjacency matrix.
|
|
67
|
+
|
|
68
|
+
References
|
|
69
|
+
----------
|
|
70
|
+
.. [1] L. Baldesi, C. T. Butts, A. Markopoulou, "Spectral Graph Forge:
|
|
71
|
+
Graph Generation Targeting Modularity", IEEE Infocom, '18.
|
|
72
|
+
https://arxiv.org/abs/1801.01715
|
|
73
|
+
.. [2] M. Newman, "Networks: an introduction", Oxford university press,
|
|
74
|
+
2010
|
|
75
|
+
|
|
76
|
+
Examples
|
|
77
|
+
--------
|
|
78
|
+
>>> G = nx.karate_club_graph()
|
|
79
|
+
>>> H = nx.spectral_graph_forge(G, 0.3)
|
|
80
|
+
>>>
|
|
81
|
+
"""
|
|
82
|
+
import numpy as np
|
|
83
|
+
import scipy as sp
|
|
84
|
+
|
|
85
|
+
available_transformations = ["identity", "modularity"]
|
|
86
|
+
alpha = np.clip(alpha, 0, 1)
|
|
87
|
+
A = nx.to_numpy_array(G)
|
|
88
|
+
n = A.shape[1]
|
|
89
|
+
level = round(n * alpha)
|
|
90
|
+
|
|
91
|
+
if transformation not in available_transformations:
|
|
92
|
+
msg = f"{transformation!r} is not a valid transformation. "
|
|
93
|
+
msg += f"Transformations: {available_transformations}"
|
|
94
|
+
raise nx.NetworkXError(msg)
|
|
95
|
+
|
|
96
|
+
K = np.ones((1, n)) @ A
|
|
97
|
+
|
|
98
|
+
B = A
|
|
99
|
+
if transformation == "modularity":
|
|
100
|
+
B -= K.T @ K / K.sum()
|
|
101
|
+
|
|
102
|
+
# Compute low-rank approximation of B
|
|
103
|
+
evals, evecs = np.linalg.eigh(B)
|
|
104
|
+
k = np.argsort(np.abs(evals))[::-1] # indices of evals in descending order
|
|
105
|
+
evecs[:, k[np.arange(level, n)]] = 0 # set smallest eigenvectors to 0
|
|
106
|
+
B = evecs @ np.diag(evals) @ evecs.T
|
|
107
|
+
|
|
108
|
+
if transformation == "modularity":
|
|
109
|
+
B += K.T @ K / K.sum()
|
|
110
|
+
|
|
111
|
+
B = np.clip(B, 0, 1)
|
|
112
|
+
np.fill_diagonal(B, 0)
|
|
113
|
+
|
|
114
|
+
for i in range(n - 1):
|
|
115
|
+
B[i, i + 1 :] = sp.stats.bernoulli.rvs(B[i, i + 1 :], random_state=seed)
|
|
116
|
+
B[i + 1 :, i] = np.transpose(B[i, i + 1 :])
|
|
117
|
+
|
|
118
|
+
H = nx.from_numpy_array(B)
|
|
119
|
+
|
|
120
|
+
return H
|