@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5

package/src/templates/controlSchemas.ts

@@ -4,603 +4,39 @@ import {
   controlsToSidebarPanels,
   getControlDefaults,
   useControlSchema,
-  type ControlDefinition,
   type ControlSchemaOptions,
   type UseControlSchemaReturn,
 } from '../composables/useControlSchema'
 import {
-  extractTemplateCollection,
-} from './builders'
+  cloneControlSchema,
+  cloneSchemaMap,
+} from './controlSchemaClone'
 import {
-  getBioTemplateInfo,
-} from './catalog'
+  mergeTemplateControlSchemas,
+} from './controlSchemaMerge'
 import {
-  getBioTemplatePresetInfo,
-} from './presets'
+  describeControlTarget,
+  resolveControlSchemaTarget,
+} from './controlSchemaTargets'
 import {
-  getBioTemplatePackInfo,
-} from './packs'
+  presetControlSchemas,
+} from './presetControlSchemas'
+import {
+  templateControlSchemas,
+} from './templateControlSchemas'
 import type {
-  BioTemplateEnvelope,
-  TemplateCollectionEnvelope,
   TemplateId,
-  TemplatePackId,
   TemplatePresetId,
 } from './types'
+import type {
+  BioTemplateControlSchema,
+  BioTemplateControlTarget,
+} from './controlSchemaTypes'
 
-export type BioTemplateControlSchema = Record<string, ControlDefinition>
-export type BioTemplateControlTarget =
-  | TemplateId
-  | TemplatePackId
-  | TemplatePresetId
-  | string
-  | BioTemplateEnvelope<unknown>
-  | TemplateCollectionEnvelope
-
-const ICONS = {
-  plate: ['M4 4h16v16H4z', 'M8 4v16', 'M12 4v16', 'M16 4v16', 'M4 8h16', 'M4 12h16', 'M4 16h16'],
-  samples: ['M16 21v-2a4 4 0 0 0-8 0v2', 'M12 11a4 4 0 1 0 0-8 4 4 0 0 0 0 8'],
-  dose: ['M10 2v8L4 20h16l-6-10V2', 'M8 2h8', 'M7 14h10'],
-  table: ['M3 5h18', 'M3 12h18', 'M3 19h18', 'M8 5v14', 'M16 5v14'],
-  run: ['M4 17l6-6 4 4 6-8', 'M4 21h16'],
-  settings: ['M12 8a4 4 0 1 0 0 8 4 4 0 0 0 0-8', 'M4 12h2', 'M18 12h2', 'M12 4v2', 'M12 18v2'],
-}
-
-const PLATE_FORMAT_OPTIONS = [6, 12, 24, 48, 96, 384] as const
-const CONCENTRATION_UNITS = ['nM', 'uM', 'mM', 'ug/mL', 'mg/mL'] as const
-
-const templateControlSchemas = {
-  'plate-map': {
-    plateName: {
-      label: 'Plate name',
-      default: 'Plate 1',
-      section: 'layout',
-      sectionLabel: 'Layout',
-      sectionSubtitle: 'Plate geometry',
-      view: 'design',
-      sidebar: { icon: ICONS.plate, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    plateFormat: {
-      label: 'Format',
-      default: 96,
-      options: PLATE_FORMAT_OPTIONS,
-      section: 'layout',
-      view: 'design',
-    },
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['Control', 'Treatment'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Groups and legend',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-  },
-  'sample-sheet': {
-    sampleCount: {
-      type: 'number',
-      label: 'Sample count',
-      default: 2,
-      min: 1,
-      max: 10000,
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Metadata table',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    includeGroups: {
-      label: 'Include groups',
-      default: true,
-      section: 'samples',
-      view: 'design',
-    },
-    includeBatch: {
-      label: 'Include batch',
-      default: false,
-      section: 'columns',
-      sectionLabel: 'Columns',
-      view: 'design',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-  },
-  'sample-prep': {
-    prepType: {
-      label: 'Prep type',
-      default: 'extraction',
-      options: ['extraction', 'dilution', 'normalization', 'transfer', 'quench', 'custom'],
-      section: 'protocol',
-      sectionLabel: 'Protocol',
-      sectionSubtitle: 'Prep workflow',
-      view: 'design',
-      sidebar: { icon: ICONS.run, iconColor: '#f97316', iconBg: '#ffedd5' },
-    },
-    volumeUnit: {
-      label: 'Volume unit',
-      default: 'uL',
-      options: ['uL', 'mL'],
-      section: 'protocol',
-      view: 'design',
-    },
-    outputVolume: {
-      type: 'number',
-      label: 'Output volume',
-      default: 50,
-      min: 0,
-      section: 'protocol',
-      view: 'design',
-    },
-  },
-  'dose-response': {
-    unit: {
-      label: 'Dose unit',
-      default: 'uM',
-      options: CONCENTRATION_UNITS,
-      section: 'dose',
-      sectionLabel: 'Dose Design',
-      sectionSubtitle: 'Concentration series',
-      view: 'design',
-      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
-    },
-    replicates: {
-      type: 'number',
-      label: 'Replicates',
-      default: 3,
-      min: 1,
-      max: 24,
-      section: 'dose',
-      view: 'design',
-    },
-    includePlateLayout: {
-      label: 'Create plate layout',
-      default: true,
-      section: 'layout',
-      sectionLabel: 'Layout',
-      sectionSubtitle: 'Well assignment',
-      view: 'design',
-      sidebar: { icon: ICONS.plate, iconColor: '#6366f1', iconBg: '#e0e7ff', defaultOpen: false },
-    },
-  },
-  'calibration-curve': {
-    analyte: {
-      label: 'Analyte',
-      default: 'Analyte',
-      section: 'standards',
-      sectionLabel: 'Standards',
-      sectionSubtitle: 'Curve setup',
-      view: 'analysis',
-      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
-    },
-    model: {
-      label: 'Model',
-      default: 'linear',
-      options: ['linear', 'linear-weighted-1-x', 'linear-weighted-1-x2', 'quadratic', 'four-parameter-logistic'],
-      section: 'fit',
-      sectionLabel: 'Fit',
-      view: 'analysis',
-      sidebar: { icon: ICONS.settings, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    minRSquared: {
-      type: 'number',
-      label: 'Minimum R squared',
-      default: 0.99,
-      min: 0,
-      max: 1,
-      props: { step: 0.001 },
-      section: 'fit',
-      view: 'analysis',
-    },
-  },
-  'time-course': {
-    timeUnit: {
-      label: 'Time unit',
-      default: 'hour',
-      options: ['second', 'minute', 'hour', 'day', 'week'],
-      section: 'schedule',
-      sectionLabel: 'Schedule',
-      sectionSubtitle: 'Sampling timeline',
-      view: 'design',
-      sidebar: { icon: ICONS.run, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    replicates: {
-      type: 'number',
-      label: 'Replicates',
-      default: 3,
-      min: 1,
-      max: 24,
-      section: 'samples',
-      sectionLabel: 'Samples',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-  },
-  'protocol-steps': {
-    defaultDuration: {
-      type: 'number',
-      label: 'Default duration',
-      default: 30,
-      min: 0,
-      section: 'protocol',
-      sectionLabel: 'Protocol',
-      sectionSubtitle: 'Step defaults',
-      view: 'design',
-      sidebar: { icon: ICONS.run, iconColor: '#f97316', iconBg: '#ffedd5' },
-      props: { suffix: 'min' },
-    },
-    editable: {
-      label: 'Editable timeline',
-      default: true,
-      section: 'protocol',
-      view: 'design',
-    },
-  },
-  'assay-matrix': {
-    featureType: {
-      label: 'Feature type',
-      default: 'metabolite',
-      options: ['metabolite', 'protein', 'gene', 'cell', 'compound', 'readout', 'other'],
-      section: 'features',
-      sectionLabel: 'Features',
-      sectionSubtitle: 'Measurement matrix',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    normalizeValues: {
-      label: 'Normalize values',
-      default: false,
-      section: 'analysis',
-      sectionLabel: 'Analysis',
-      view: 'analysis',
-      sidebar: { icon: ICONS.settings, iconColor: '#6366f1', iconBg: '#e0e7ff', defaultOpen: false },
-    },
-  },
-  'reagent-list': {
-    reagentKind: {
-      label: 'Reagent kind',
-      default: 'reagent',
-      options: ['compound', 'antibody', 'primer', 'enzyme', 'buffer', 'media', 'kit', 'reagent', 'other'],
-      section: 'inventory',
-      sectionLabel: 'Inventory',
-      sectionSubtitle: 'Reagent metadata',
-      view: 'design',
-      sidebar: { icon: ICONS.table, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    trackStock: {
-      label: 'Track stock level',
-      default: true,
-      section: 'inventory',
-      view: 'design',
-    },
-  },
-  'flow-cytometry-panel': {
-    markers: {
-      type: 'tags',
-      label: 'Markers',
-      default: ['CD3', 'CD4', 'CD8'],
-      section: 'panel',
-      sectionLabel: 'Panel',
-      sectionSubtitle: 'Markers and controls',
-      view: 'design',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    instrument: {
-      label: 'Instrument',
-      default: 'Flow cytometer',
-      section: 'panel',
-      sectionLabel: 'Panel',
-      sectionSubtitle: 'Markers and controls',
-      view: 'design',
-      sidebar: { icon: ICONS.settings, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    includeDefaultControls: {
-      label: 'Default controls',
-      default: true,
-      section: 'panel',
-      view: 'design',
-    },
-  },
-  'instrument-run': {
-    instrument: {
-      label: 'Instrument',
-      default: 'LC-MS',
-      options: ['LC-MS', 'GC-MS', 'Orbitrap', 'Triple quadrupole', 'Plate reader', 'Other'],
-      section: 'acquisition',
-      sectionLabel: 'Acquisition',
-      sectionSubtitle: 'Run queue',
-      view: 'run',
-      sidebar: { icon: ICONS.run, iconColor: '#ef4444', iconBg: '#fee2e2' },
-    },
-    method: {
-      label: 'Method',
-      default: 'Default method',
-      section: 'acquisition',
-      view: 'run',
-    },
-    includeQc: {
-      label: 'Include QC',
-      default: true,
-      section: 'quality',
-      sectionLabel: 'Quality Control',
-      view: 'run',
-      sidebar: { icon: ICONS.settings, iconColor: '#6366f1', iconBg: '#e0e7ff', defaultOpen: false },
-    },
-  },
-  'qpcr-plate': {
-    chemistry: {
-      label: 'Chemistry',
-      default: 'sybr',
-      options: ['sybr', 'taqman', 'probe', 'evagreen', 'other'],
-      section: 'assay',
-      sectionLabel: 'Assay',
-      sectionSubtitle: 'qPCR setup',
-      view: 'design',
-      sidebar: { icon: ICONS.plate, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    replicates: {
-      type: 'number',
-      label: 'Replicates',
-      default: 3,
-      min: 1,
-      max: 12,
-      section: 'assay',
-      view: 'design',
-    },
-    includeNoTemplateControls: {
-      label: 'No-template controls',
-      default: true,
-      section: 'controls',
-      sectionLabel: 'Controls',
-      view: 'design',
-      sidebar: { icon: ICONS.settings, iconColor: '#8b5cf6', iconBg: '#ede9fe', defaultOpen: false },
-    },
-  },
-} satisfies Record<TemplateId, BioTemplateControlSchema>
-
-const presetControlSchemas = {
-  'wellplate-screen': {
-    ...templateControlSchemas['plate-map'],
-    ...templateControlSchemas['dose-response'],
-    sampleNames: {
-      ...templateControlSchemas['plate-map'].sampleNames,
-      default: ['Control', 'Treatment'],
-    },
-  },
-  'qpcr-expression': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['Control', 'Treatment'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Expression groups',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    targets: {
-      type: 'tags',
-      label: 'Targets',
-      default: ['ACTB', 'GAPDH'],
-      section: 'assay',
-      sectionLabel: 'Assay',
-      view: 'design',
-      sidebar: { icon: ICONS.plate, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    ...templateControlSchemas['qpcr-plate'],
-  },
-  'lcms-batch': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['S001', 'S002'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Batch samples',
-      view: 'run',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    featureNames: {
-      type: 'tags',
-      label: 'Features',
-      default: ['Glucose', 'Lactate'],
-      section: 'features',
-      sectionLabel: 'Features',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    ...templateControlSchemas['instrument-run'],
-    ...templateControlSchemas['assay-matrix'],
-  },
-  'targeted-metabolomics': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['S001', 'S002'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Unknowns and QC pool',
-      view: 'run',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    metaboliteNames: {
-      type: 'tags',
-      label: 'Metabolites',
-      default: ['Glucose', 'Lactate', 'Pyruvate'],
-      section: 'features',
-      sectionLabel: 'Metabolites',
-      sectionSubtitle: 'Quantitation panel',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    internalStandards: {
-      type: 'tags',
-      label: 'Internal standards',
-      default: ['Stable isotope internal standard mix'],
-      section: 'standards',
-      sectionLabel: 'Standards',
-      sectionSubtitle: 'Calibration and internal standards',
-      view: 'analysis',
-      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
-    },
-    standardConcentrations: {
-      type: 'tags',
-      label: 'Calibration levels',
-      default: ['0.1', '1', '10', '100'],
-      section: 'standards',
-      view: 'analysis',
-    },
-    concentrationUnit: {
-      label: 'Concentration unit',
-      default: 'uM',
-      options: CONCENTRATION_UNITS,
-      section: 'standards',
-      view: 'analysis',
-    },
-    responseUnit: {
-      label: 'Response unit',
-      default: 'peak area ratio',
-      section: 'readout',
-      sectionLabel: 'Readout',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    instrument: {
-      ...templateControlSchemas['instrument-run'].instrument,
-      default: 'LC-MS',
-    },
-    method: {
-      ...templateControlSchemas['instrument-run'].method,
-      default: 'Targeted metabolomics',
-    },
-    prepType: {
-      ...templateControlSchemas['sample-prep'].prepType,
-      default: 'extraction',
-    },
-    outputVolume: templateControlSchemas['sample-prep'].outputVolume,
-    includeQc: templateControlSchemas['instrument-run'].includeQc,
-  },
-  'elisa-assay': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['Control', 'Treatment'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Unknowns and controls',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    analyte: {
-      label: 'Analyte',
-      default: 'Analyte',
-      section: 'standards',
-      sectionLabel: 'Standards',
-      sectionSubtitle: 'Calibration setup',
-      view: 'analysis',
-      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
-    },
-    standardConcentrations: {
-      type: 'tags',
-      label: 'Standards',
-      default: ['1000', '100', '10', '1'],
-      section: 'standards',
-      view: 'analysis',
-    },
-    unit: {
-      label: 'Concentration unit',
-      default: 'pg/mL',
-      options: ['pg/mL', 'ng/mL', 'ug/mL', 'nM', 'uM'],
-      section: 'standards',
-      view: 'analysis',
-    },
-    responseUnit: {
-      label: 'Response unit',
-      default: 'OD450',
-      section: 'readout',
-      sectionLabel: 'Readout',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    plateName: {
-      label: 'Plate name',
-      default: 'ELISA plate',
-      section: 'layout',
-      sectionLabel: 'Layout',
-      sectionSubtitle: 'Plate geometry',
-      view: 'design',
-      sidebar: { icon: ICONS.plate, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-    plateFormat: {
-      label: 'Format',
-      default: 96,
-      options: PLATE_FORMAT_OPTIONS,
-      section: 'layout',
-      view: 'design',
-    },
-  },
-  'flow-cytometry-assay': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['Control', 'Treatment'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Assay groups',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    markers: {
-      ...templateControlSchemas['flow-cytometry-panel'].markers,
-      default: ['CD3', 'CD4', 'CD8'],
-    },
-    featureNames: {
-      type: 'tags',
-      label: 'Readouts',
-      default: ['CD3+ cells', 'CD4+ cells', 'CD8+ cells'],
-      section: 'features',
-      sectionLabel: 'Readouts',
-      sectionSubtitle: 'Assay matrix columns',
-      view: 'analysis',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    instrument: {
-      ...templateControlSchemas['flow-cytometry-panel'].instrument,
-      default: 'Flow cytometer',
-    },
-    includeDefaultControls: templateControlSchemas['flow-cytometry-panel'].includeDefaultControls,
-  },
-  'western-blot-assay': {
-    sampleNames: {
-      type: 'tags',
-      label: 'Samples',
-      default: ['Control', 'Treatment'],
-      section: 'samples',
-      sectionLabel: 'Samples',
-      sectionSubtitle: 'Blot lanes and groups',
-      view: 'design',
-      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
-    },
-    targets: {
-      type: 'tags',
-      label: 'Targets',
-      default: ['Target protein'],
-      section: 'assay',
-      sectionLabel: 'Assay',
-      sectionSubtitle: 'Protein targets',
-      view: 'design',
-      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
-    },
-    loadingControl: {
-      label: 'Loading control',
-      default: 'ACTB',
-      section: 'normalization',
-      sectionLabel: 'Normalization',
-      view: 'analysis',
-      sidebar: { icon: ICONS.settings, iconColor: '#6366f1', iconBg: '#e0e7ff' },
-    },
-  },
-} satisfies Record<TemplatePresetId, BioTemplateControlSchema>
+export type {
+  BioTemplateControlSchema,
+  BioTemplateControlTarget,
+} from './controlSchemaTypes'
 
 export function listBioTemplateControlSchemas(): Record<TemplateId, BioTemplateControlSchema> {
   return cloneSchemaMap(templateControlSchemas)
@@ -622,7 +58,7 @@ export function getBioTemplateControlSchema(
   if (resolved.kind === 'preset') {
     return cloneControlSchema(presetControlSchemas[resolved.name])
   }
-  return mergeTemplateControlSchemas(resolved.templates)
+  return mergeTemplateControlSchemas(resolved.templates, templateControlSchemas)
 }
 
 export function requireBioTemplateControlSchema(
@@ -666,121 +102,3 @@ export function bioTemplateControlsToSectionFormSchemas(
 export function getBioTemplateControlDefaults(target: BioTemplateControlTarget) {
   return getControlDefaults(requireBioTemplateControlSchema(target))
 }
-
-function resolveControlSchemaTarget(
-  target: BioTemplateControlTarget
-):
-  | { kind: 'template'; name: TemplateId }
-  | { kind: 'pack'; templates: TemplateId[] }
-  | { kind: 'preset'; name: TemplatePresetId }
-  | { kind: 'collection'; templates: TemplateId[] }
-  | undefined {
-  if (typeof target === 'string') {
-    const preset = getBioTemplatePresetInfo(target)
-    if (preset) return { kind: 'preset', name: preset.name }
-    const pack = getBioTemplatePackInfo(target)
-    if (pack) return { kind: 'pack', templates: [...pack.templates] }
-    const template = getBioTemplateInfo(target)
-    if (template) return { kind: 'template', name: template.template_id }
-    return undefined
-  }
-
-  if (isTemplateEnvelope(target)) {
-    const template = getBioTemplateInfo(target.template_id)
-    return template ? { kind: 'template', name: template.template_id } : undefined
-  }
-
-  const presetName = collectionPresetName(target)
-  if (presetName) {
-    const preset = getBioTemplatePresetInfo(presetName)
-    if (preset) return { kind: 'preset', name: preset.name }
-  }
-
-  const packName = collectionPackName(target)
-  if (packName) {
-    const pack = getBioTemplatePackInfo(packName)
-    if (pack) return { kind: 'pack', templates: [...pack.templates] }
-  }
-
-  const collection = extractTemplateCollection(target)
-  const templateIds = Object.keys(collection)
-    .map(id => getBioTemplateInfo(id)?.template_id)
-    .filter((id): id is TemplateId => id !== undefined)
-  return templateIds.length > 0 ? { kind: 'collection', templates: templateIds } : undefined
-}
-
-function mergeTemplateControlSchemas(templateIds: TemplateId[]): BioTemplateControlSchema {
-  const merged: BioTemplateControlSchema = {}
-  for (const templateId of templateIds) {
-    const schema = templateControlSchemas[templateId]
-    const template = getBioTemplateInfo(templateId)
-    for (const [name, definition] of Object.entries(schema)) {
-      const key = `${camelize(templateId)}${capitalize(name)}`
-      merged[key] = {
-        ...cloneControlDefinition(definition),
-        section: definition.section ?? templateId,
-        sectionLabel: definition.sectionLabel ?? template?.label ?? templateId,
-      }
-    }
-  }
-  return merged
-}
-
-function cloneSchemaMap<TName extends string>(
-  schemas: Record<TName, BioTemplateControlSchema>
-): Record<TName, BioTemplateControlSchema> {
-  const result = {} as Record<TName, BioTemplateControlSchema>
-  for (const name of Object.keys(schemas) as TName[]) {
-    result[name] = cloneControlSchema(schemas[name])
-  }
-  return result
-}
-
-function cloneControlSchema(schema: BioTemplateControlSchema): BioTemplateControlSchema {
-  return Object.fromEntries(
-    Object.entries(schema).map(([name, definition]) => [name, cloneControlDefinition(definition)])
-  )
-}
-
-function cloneControlDefinition(definition: BioTemplateControlSchema[string]): BioTemplateControlSchema[string] {
-  return {
-    ...definition,
-    options: definition.options ? [...definition.options] : undefined,
-    props: definition.props ? { ...definition.props } : undefined,
-    sidebar: typeof definition.sidebar === 'object' && definition.sidebar !== null
-      ? { ...definition.sidebar }
-      : definition.sidebar,
-  }
-}
-
-function isTemplateEnvelope(value: unknown): value is BioTemplateEnvelope<unknown> {
-  return isRecord(value) && typeof value.template_id === 'string' && 'data' in value
-}
-
-function collectionPresetName(value: unknown): string | undefined {
-  if (!isRecord(value) || !isRecord(value.metadata)) return undefined
-  return typeof value.metadata.preset === 'string' ? value.metadata.preset : undefined
-}
-
-function collectionPackName(value: unknown): string | undefined {
-  if (!isRecord(value) || !isRecord(value.metadata)) return undefined
-  return typeof value.metadata.pack === 'string' ? value.metadata.pack : undefined
-}
-
-function isRecord(value: unknown): value is Record<string, unknown> {
-  return typeof value === 'object' && value !== null
-}
-
-function describeControlTarget(target: BioTemplateControlTarget): string {
-  if (typeof target === 'string') return target
-  if (isTemplateEnvelope(target)) return target.template_id
-  return collectionPresetName(target) ?? collectionPackName(target) ?? 'template collection'
-}
-
-function camelize(value: string): string {
-  return value.replace(/-([a-z0-9])/g, (_, char: string) => char.toUpperCase())
-}
-
-function capitalize(value: string): string {
-  return value.charAt(0).toUpperCase() + value.slice(1)
-}