@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5

package/src/composables/protocolTemplateCatalog.ts

@@ -0,0 +1,325 @@
+import type { ProtocolStepType } from '../types'
+
+// Parameter definition for step templates
+export interface ParameterDefinition {
+  key: string
+  label: string
+  type: 'number' | 'text' | 'select' | 'concentration' | 'temperature' | 'duration' | 'reagent'
+  unit?: string
+  options?: Array<{ value: string; label: string }>
+  required?: boolean
+  default?: unknown
+  min?: number
+  max?: number
+  placeholder?: string
+}
+
+// Step template definition
+export interface StepTemplate {
+  id: string
+  type: ProtocolStepType
+  name: string
+  description?: string
+  defaultDuration?: number
+  parameters: ParameterDefinition[]
+  isBuiltIn?: boolean
+}
+
+export const BUILT_IN_PROTOCOL_TEMPLATES: StepTemplate[] = [
+  {
+    id: 'builtin-incubation',
+    type: 'incubation',
+    name: 'Incubation',
+    description: 'Incubate samples at specified conditions',
+    defaultDuration: 60,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'temperature',
+        label: 'Temperature',
+        type: 'temperature',
+        unit: '°C',
+        required: true,
+        default: 37,
+        min: -80,
+        max: 100,
+      },
+      {
+        key: 'duration',
+        label: 'Duration',
+        type: 'duration',
+        unit: 'hours',
+        required: true,
+        default: 24,
+        min: 0,
+      },
+      {
+        key: 'co2',
+        label: 'CO2',
+        type: 'number',
+        unit: '%',
+        required: false,
+        default: 5,
+        min: 0,
+        max: 100,
+      },
+      {
+        key: 'humidity',
+        label: 'Humidity',
+        type: 'number',
+        unit: '%',
+        required: false,
+        default: 95,
+        min: 0,
+        max: 100,
+      },
+    ],
+  },
+  {
+    id: 'builtin-wash',
+    type: 'wash',
+    name: 'Wash',
+    description: 'Wash samples with buffer',
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'buffer',
+        label: 'Buffer',
+        type: 'select',
+        required: true,
+        default: 'PBS',
+        options: [
+          { value: 'PBS', label: 'PBS' },
+          { value: 'PBST', label: 'PBST' },
+          { value: 'TBS', label: 'TBS' },
+          { value: 'TBST', label: 'TBST' },
+          { value: 'Water', label: 'Water' },
+          { value: 'Other', label: 'Other' },
+        ],
+      },
+      {
+        key: 'volume',
+        label: 'Volume',
+        type: 'number',
+        unit: 'µL',
+        required: true,
+        default: 200,
+        min: 0,
+      },
+      {
+        key: 'cycles',
+        label: 'Wash Cycles',
+        type: 'number',
+        required: true,
+        default: 3,
+        min: 1,
+        max: 10,
+      },
+    ],
+  },
+  {
+    id: 'builtin-addition',
+    type: 'addition',
+    name: 'Addition',
+    description: 'Add reagent or compound to samples',
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'reagent',
+        label: 'Reagent',
+        type: 'text',
+        required: true,
+        placeholder: 'Enter reagent name',
+      },
+      {
+        key: 'volume',
+        label: 'Volume',
+        type: 'number',
+        unit: 'µL',
+        required: true,
+        default: 100,
+        min: 0,
+      },
+      {
+        key: 'concentration',
+        label: 'Concentration',
+        type: 'concentration',
+        required: false,
+      },
+    ],
+  },
+  {
+    id: 'builtin-measurement',
+    type: 'measurement',
+    name: 'Measurement',
+    description: 'Take measurements using specified instrument',
+    defaultDuration: 15,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'instrument',
+        label: 'Instrument',
+        type: 'select',
+        required: true,
+        options: [
+          { value: 'plate_reader', label: 'Plate Reader' },
+          { value: 'microscope', label: 'Microscope' },
+          { value: 'flow_cytometer', label: 'Flow Cytometer' },
+          { value: 'spectrophotometer', label: 'Spectrophotometer' },
+          { value: 'other', label: 'Other' },
+        ],
+      },
+      {
+        key: 'readout',
+        label: 'Readout Type',
+        type: 'text',
+        required: false,
+        placeholder: 'e.g., Absorbance 450nm',
+      },
+      {
+        key: 'notes',
+        label: 'Parameters',
+        type: 'text',
+        required: false,
+        placeholder: 'Additional parameters',
+      },
+    ],
+  },
+  {
+    id: 'builtin-centrifuge',
+    type: 'centrifuge',
+    name: 'Centrifuge',
+    description: 'Centrifuge samples',
+    defaultDuration: 10,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'speed',
+        label: 'Speed',
+        type: 'number',
+        unit: 'RPM',
+        required: true,
+        default: 1000,
+        min: 100,
+        max: 20000,
+      },
+      {
+        key: 'duration',
+        label: 'Duration',
+        type: 'number',
+        unit: 'min',
+        required: true,
+        default: 5,
+        min: 1,
+      },
+      {
+        key: 'temperature',
+        label: 'Temperature',
+        type: 'temperature',
+        unit: '°C',
+        required: false,
+        default: 4,
+        min: -10,
+        max: 40,
+      },
+    ],
+  },
+  {
+    id: 'builtin-transfer',
+    type: 'transfer',
+    name: 'Transfer',
+    description: 'Transfer samples between containers',
+    defaultDuration: 10,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'source',
+        label: 'Source',
+        type: 'text',
+        required: true,
+        placeholder: 'Source container',
+      },
+      {
+        key: 'destination',
+        label: 'Destination',
+        type: 'text',
+        required: true,
+        placeholder: 'Destination container',
+      },
+      {
+        key: 'volume',
+        label: 'Volume',
+        type: 'number',
+        unit: 'µL',
+        required: true,
+        default: 100,
+        min: 0,
+      },
+    ],
+  },
+  {
+    id: 'builtin-mix',
+    type: 'mix',
+    name: 'Mix',
+    description: 'Mix samples',
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'method',
+        label: 'Method',
+        type: 'select',
+        required: true,
+        default: 'pipette',
+        options: [
+          { value: 'pipette', label: 'Pipette mixing' },
+          { value: 'vortex', label: 'Vortex' },
+          { value: 'shaker', label: 'Orbital shaker' },
+          { value: 'inversion', label: 'Inversion' },
+        ],
+      },
+      {
+        key: 'duration',
+        label: 'Duration',
+        type: 'number',
+        unit: 'sec',
+        required: false,
+        default: 30,
+        min: 1,
+      },
+      {
+        key: 'speed',
+        label: 'Speed/Intensity',
+        type: 'text',
+        required: false,
+        placeholder: 'e.g., 300 RPM',
+      },
+    ],
+  },
+  {
+    id: 'builtin-custom',
+    type: 'custom',
+    name: 'Custom Step',
+    description: 'Custom protocol step',
+    defaultDuration: 15,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: 'description',
+        label: 'Description',
+        type: 'text',
+        required: true,
+        placeholder: 'Describe the step',
+      },
+      {
+        key: 'notes',
+        label: 'Notes',
+        type: 'text',
+        required: false,
+        placeholder: 'Additional notes',
+      },
+    ],
+  },
+]