@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (443) hide show
  1. package/dist/__tests__/components/AppTopBar.navigation.test.d.ts +1 -0
  2. package/dist/__tests__/components/DoseCalculatorVolumeField.test.d.ts +1 -0
  3. package/dist/__tests__/components/PlateMapEditorToolbarInternal.test.d.ts +1 -0
  4. package/dist/__tests__/components/PluginWorkspaceView.controls.test.d.ts +1 -0
  5. package/dist/__tests__/components/PluginWorkspaceView.navigation.test.d.ts +1 -0
  6. package/dist/__tests__/components/PluginWorkspaceView.shell.test.d.ts +1 -0
  7. package/dist/__tests__/components/ProtocolStep.presentation.test.d.ts +1 -0
  8. package/dist/__tests__/components/ProtocolStepEditor.state.test.d.ts +1 -0
  9. package/dist/__tests__/components/ProtocolStepParameterField.test.d.ts +1 -0
  10. package/dist/__tests__/components/ReagentList.presentation.test.d.ts +1 -0
  11. package/dist/__tests__/components/SampleSelector.colors.test.d.ts +1 -0
  12. package/dist/__tests__/components/SampleSelector.drag.test.d.ts +1 -0
  13. package/dist/__tests__/components/SampleSelector.groups.test.d.ts +1 -0
  14. package/dist/__tests__/components/SampleSelector.selection.test.d.ts +1 -0
  15. package/dist/__tests__/components/SampleSelectorSampleRow.test.d.ts +1 -0
  16. package/dist/__tests__/components/ScheduleCalendar.test.d.ts +1 -0
  17. package/dist/__tests__/components/SettingsModal.schema.test.d.ts +1 -0
  18. package/dist/__tests__/components/WellPlate.colors.test.d.ts +1 -0
  19. package/dist/__tests__/components/WellPlate.conditions.test.d.ts +1 -0
  20. package/dist/__tests__/components/WellPlate.geometry.test.d.ts +1 -0
  21. package/dist/__tests__/components/WellPlate.interaction.test.d.ts +1 -0
  22. package/dist/__tests__/components/WellPlate.legend.test.d.ts +1 -0
  23. package/dist/__tests__/components/WellPlate.rendering.test.d.ts +1 -0
  24. package/dist/__tests__/components/WellPlate.sampleDrop.test.d.ts +1 -0
  25. package/dist/__tests__/composables/autoGroup/classify.test.d.ts +1 -0
  26. package/dist/__tests__/composables/autoGroup/columns.test.d.ts +1 -0
  27. package/dist/__tests__/composables/autoGroup/compose.test.d.ts +1 -0
  28. package/dist/__tests__/composables/autoGroup/cooccurrence.test.d.ts +1 -0
  29. package/dist/__tests__/composables/autoGroup/fingerprint.test.d.ts +1 -0
  30. package/dist/__tests__/composables/autoGroup/integration.test.d.ts +1 -0
  31. package/dist/__tests__/composables/autoGroup/template.test.d.ts +1 -0
  32. package/dist/__tests__/composables/autoGroup/tokenize.test.d.ts +1 -0
  33. package/dist/__tests__/composables/useAutoGroupInputSources.test.d.ts +1 -0
  34. package/dist/__tests__/composables/useScheduleCalendarLayout.test.d.ts +1 -0
  35. package/dist/__tests__/docs/extractDocsComponents.test.d.ts +1 -0
  36. package/dist/__tests__/docs/extractDocsExports.test.d.ts +1 -0
  37. package/dist/__tests__/docs/extractDocsParsing.test.d.ts +1 -0
  38. package/dist/__tests__/docs/extractDocsTemplates.test.d.ts +1 -0
  39. package/dist/__tests__/docs/extractDocsTheme.test.d.ts +1 -0
  40. package/dist/components/AppTopBar.navigation.d.ts +11 -0
  41. package/dist/components/BaseButton.vue.d.ts +1 -1
  42. package/dist/components/BaseCheckbox.vue.d.ts +1 -1
  43. package/dist/components/BaseInput.vue.d.ts +2 -2
  44. package/dist/components/BasePill.vue.d.ts +1 -1
  45. package/dist/components/BaseRadioGroup.vue.d.ts +1 -1
  46. package/dist/components/BaseSelect.vue.d.ts +1 -1
  47. package/dist/components/BaseSlider.vue.d.ts +2 -2
  48. package/dist/components/BaseTextarea.vue.d.ts +2 -2
  49. package/dist/components/BaseToggle.vue.d.ts +1 -1
  50. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +2 -2
  51. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +1 -1
  52. package/dist/components/ColorSlider.vue.d.ts +2 -2
  53. package/dist/components/ConcentrationInput.vue.d.ts +2 -2
  54. package/dist/components/DatePicker.vue.d.ts +1 -1
  55. package/dist/components/DateTimePicker.vue.d.ts +2 -2
  56. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +15 -0
  57. package/dist/components/DropdownButton.vue.d.ts +1 -1
  58. package/dist/components/FileUploader.vue.d.ts +2 -2
  59. package/dist/components/FormulaInput.vue.d.ts +2 -2
  60. package/dist/components/IconButton.vue.d.ts +1 -1
  61. package/dist/components/LoadingSpinner.vue.d.ts +1 -1
  62. package/dist/components/MoleculeInput.vue.d.ts +2 -2
  63. package/dist/components/MultiSelect.vue.d.ts +1 -1
  64. package/dist/components/NumberInput.vue.d.ts +1 -1
  65. package/dist/components/PlateMapEditor.vue.d.ts +6 -6
  66. package/dist/components/PluginWorkspaceView.controls.d.ts +28 -0
  67. package/dist/components/PluginWorkspaceView.navigation.d.ts +29 -0
  68. package/dist/components/PluginWorkspaceView.props.d.ts +151 -0
  69. package/dist/components/PluginWorkspaceView.shell.d.ts +19 -0
  70. package/dist/components/PluginWorkspaceView.vue.d.ts +46 -195
  71. package/dist/components/ProgressBar.vue.d.ts +1 -1
  72. package/dist/components/ProtocolStep.presentation.d.ts +4 -0
  73. package/dist/components/ProtocolStepEditor.state.d.ts +18 -0
  74. package/dist/components/ProtocolStepParameterField.vue.d.ts +12 -0
  75. package/dist/components/ReagentList.presentation.d.ts +16 -0
  76. package/dist/components/ResourceCard.vue.d.ts +1 -1
  77. package/dist/components/SampleSelector.colors.d.ts +13 -0
  78. package/dist/components/SampleSelector.drag.d.ts +24 -0
  79. package/dist/components/SampleSelector.groups.d.ts +15 -0
  80. package/dist/components/SampleSelector.selection.d.ts +26 -0
  81. package/dist/components/SampleSelector.vue.d.ts +4 -1
  82. package/dist/components/SampleSelectorSampleRow.vue.d.ts +21 -0
  83. package/dist/components/SegmentedControl.vue.d.ts +1 -1
  84. package/dist/components/SequenceInput.vue.d.ts +2 -2
  85. package/dist/components/SequenceProgressBar.vue.d.ts +1 -1
  86. package/dist/components/SettingsModal.schema.d.ts +9 -0
  87. package/dist/components/StatusIndicator.vue.d.ts +1 -1
  88. package/dist/components/TagsInput.vue.d.ts +2 -2
  89. package/dist/components/TimePicker.vue.d.ts +2 -2
  90. package/dist/components/TimeRangeInput.vue.d.ts +1 -1
  91. package/dist/components/UnitInput.vue.d.ts +2 -2
  92. package/dist/components/WellPlate.colors.d.ts +9 -0
  93. package/dist/components/WellPlate.conditions.d.ts +26 -0
  94. package/dist/components/WellPlate.geometry.d.ts +23 -0
  95. package/dist/components/WellPlate.interaction.d.ts +71 -0
  96. package/dist/components/WellPlate.legend.d.ts +2 -0
  97. package/dist/components/WellPlate.rendering.d.ts +24 -0
  98. package/dist/components/WellPlate.sampleDrop.d.ts +8 -0
  99. package/dist/components/WellPlate.vue.d.ts +1 -1
  100. package/dist/components/index.js +2 -2
  101. package/dist/components/internal/ActionItemInternal.vue.d.ts +1 -1
  102. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +28 -0
  103. package/dist/{components-BhK-dW99.js → components-DtHA2bgp.js} +3754 -2991
  104. package/dist/components-DtHA2bgp.js.map +1 -0
  105. package/dist/composables/autoGroup/classKey.d.ts +4 -0
  106. package/dist/composables/autoGroup/classify.d.ts +28 -0
  107. package/dist/composables/autoGroup/colors.d.ts +2 -0
  108. package/dist/composables/autoGroup/columns.d.ts +10 -0
  109. package/dist/composables/autoGroup/compose.d.ts +8 -0
  110. package/dist/composables/autoGroup/cooccurrence.d.ts +2 -0
  111. package/dist/composables/autoGroup/csv-shim.d.ts +2 -0
  112. package/dist/composables/autoGroup/fingerprint.d.ts +3 -0
  113. package/dist/composables/autoGroup/index.d.ts +16 -0
  114. package/dist/composables/autoGroup/replicatePreGroup.d.ts +38 -0
  115. package/dist/composables/autoGroup/template.d.ts +15 -0
  116. package/dist/composables/autoGroup/tokenize.d.ts +8 -0
  117. package/dist/composables/autoGroupConstants.d.ts +1 -0
  118. package/dist/composables/autoGroupGrouping.d.ts +3 -0
  119. package/dist/composables/controlComponentBindings.d.ts +7 -0
  120. package/dist/composables/controlSchemaAdapters.d.ts +20 -0
  121. package/dist/composables/controlSchemaDoseDesign.d.ts +11 -0
  122. package/dist/composables/controlSchemaFormFields.d.ts +3 -0
  123. package/dist/composables/controlSchemaLayout.d.ts +7 -0
  124. package/dist/composables/controlSchemaModel.d.ts +5 -0
  125. package/dist/composables/controlSchemaNormalize.d.ts +15 -0
  126. package/dist/composables/controlSchemaTypes.d.ts +305 -0
  127. package/dist/composables/controlSchemaUtils.d.ts +9 -0
  128. package/dist/composables/controlWorkspaceOptions.d.ts +2 -0
  129. package/dist/composables/formBuilderSchema.d.ts +18 -0
  130. package/dist/composables/index.js +3 -3
  131. package/dist/composables/pluginEndpointBuilder.d.ts +13 -0
  132. package/dist/composables/protocolTemplateCatalog.d.ts +26 -0
  133. package/dist/composables/useAutoGroup.d.ts +61 -74
  134. package/dist/composables/useAutoGroupInputSources.d.ts +32 -0
  135. package/dist/composables/useBioTemplateControls.d.ts +1 -1
  136. package/dist/composables/useBioTemplatePresetWorkspace.d.ts +1 -1
  137. package/dist/composables/useBioTemplateWorkspace.d.ts +1 -1
  138. package/dist/composables/useControlSchema.d.ts +8 -346
  139. package/dist/composables/useControlWorkspace.d.ts +5 -0
  140. package/dist/composables/useForm.d.ts +2 -33
  141. package/dist/composables/useFormBuilder.d.ts +2 -9
  142. package/dist/composables/useFormValidation.d.ts +34 -0
  143. package/dist/composables/usePluginClient.d.ts +1 -4
  144. package/dist/composables/useProtocolTemplates.d.ts +2 -24
  145. package/dist/composables/useScheduleCalendarLayout.d.ts +49 -0
  146. package/dist/{composables-Bg7CFuNz.js → composables-Dlg8jenH.js} +33 -31
  147. package/dist/composables-Dlg8jenH.js.map +1 -0
  148. package/dist/index.js +4 -4
  149. package/dist/install.js +2 -2
  150. package/dist/styles.css +547 -516
  151. package/dist/templates/adapters.d.ts +14 -47
  152. package/dist/templates/assayLookups.d.ts +3 -0
  153. package/dist/templates/assayMatrixAdapters.d.ts +6 -0
  154. package/dist/templates/assayMatrixBuilder.d.ts +2 -0
  155. package/dist/templates/assayNormalizers.d.ts +4 -0
  156. package/dist/templates/builderDefaults.d.ts +1 -0
  157. package/dist/templates/builderIdUtils.d.ts +4 -0
  158. package/dist/templates/builderPresetControls.d.ts +10 -0
  159. package/dist/templates/builderReadUtils.d.ts +8 -0
  160. package/dist/templates/builders.d.ts +26 -67
  161. package/dist/templates/calibrationCurveAdapters.d.ts +4 -0
  162. package/dist/templates/calibrationCurveBuilder.d.ts +2 -0
  163. package/dist/templates/calibrationNormalizers.d.ts +5 -0
  164. package/dist/templates/componentBindingCatalog.d.ts +25 -0
  165. package/dist/templates/componentBindingHelpers.d.ts +17 -0
  166. package/dist/templates/componentDoseResponseProps.d.ts +3 -0
  167. package/dist/templates/componentGenericProps.d.ts +8 -0
  168. package/dist/templates/componentPlateHelpers.d.ts +5 -0
  169. package/dist/templates/componentPlateMapProps.d.ts +3 -0
  170. package/dist/templates/componentPropsFactory.d.ts +3 -0
  171. package/dist/templates/componentQpcrPlateProps.d.ts +3 -0
  172. package/dist/templates/componentTargetResolvers.d.ts +5 -0
  173. package/dist/templates/componentTemplateProps.d.ts +3 -0
  174. package/dist/templates/controlSchemaClone.d.ts +4 -0
  175. package/dist/templates/controlSchemaConstants.d.ts +10 -0
  176. package/dist/templates/controlSchemaMerge.d.ts +3 -0
  177. package/dist/templates/controlSchemaTargets.d.ts +17 -0
  178. package/dist/templates/controlSchemaTypes.d.ts +4 -0
  179. package/dist/templates/controlSchemas.d.ts +4 -4
  180. package/dist/templates/defaultBioTemplateBuilder.d.ts +2 -0
  181. package/dist/templates/doseResponseAdapters.d.ts +4 -0
  182. package/dist/templates/doseResponseBuilder.d.ts +2 -0
  183. package/dist/templates/elisaAssayCollectionBuilder.d.ts +2 -0
  184. package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +2 -0
  185. package/dist/templates/flowCytometryPanelBuilder.d.ts +2 -0
  186. package/dist/templates/flowNormalizers.d.ts +8 -0
  187. package/dist/templates/flowPanelAdapters.d.ts +4 -0
  188. package/dist/templates/index.js +1 -1
  189. package/dist/templates/instrumentRunAdapterHelpers.d.ts +8 -0
  190. package/dist/templates/instrumentRunAdapters.d.ts +8 -0
  191. package/dist/templates/instrumentRunBuilder.d.ts +2 -0
  192. package/dist/templates/lcmsBatchCollectionBuilder.d.ts +2 -0
  193. package/dist/templates/plateGeometry.d.ts +4 -0
  194. package/dist/templates/plateMapAdapters.d.ts +3 -0
  195. package/dist/templates/plateMapBuilder.d.ts +2 -0
  196. package/dist/templates/presetControlSchemas.d.ts +534 -0
  197. package/dist/templates/protocolAdapters.d.ts +5 -0
  198. package/dist/templates/protocolNormalizers.d.ts +6 -0
  199. package/dist/templates/protocolStepsBuilder.d.ts +2 -0
  200. package/dist/templates/qpcrAdapters.d.ts +5 -0
  201. package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +2 -0
  202. package/dist/templates/qpcrPlateBuilder.d.ts +2 -0
  203. package/dist/templates/reagentAdapters.d.ts +5 -0
  204. package/dist/templates/reagentListBuilder.d.ts +2 -0
  205. package/dist/templates/runNormalizers.d.ts +10 -0
  206. package/dist/templates/sampleNormalizers.d.ts +4 -0
  207. package/dist/templates/samplePrepAdapters.d.ts +4 -0
  208. package/dist/templates/samplePrepBuilder.d.ts +2 -0
  209. package/dist/templates/sampleSheetAdapters.d.ts +5 -0
  210. package/dist/templates/sampleSheetBuilder.d.ts +2 -0
  211. package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +2 -0
  212. package/dist/templates/targetedMetabolomicsHelpers.d.ts +5 -0
  213. package/dist/templates/templateAdapterTypes.d.ts +48 -0
  214. package/dist/templates/templateControlSchemas.d.ts +400 -0
  215. package/dist/templates/templateCreateOptions.d.ts +165 -0
  216. package/dist/templates/templateEnvelopes.d.ts +9 -0
  217. package/dist/templates/templatePackCollectionBuilder.d.ts +2 -0
  218. package/dist/templates/templatePresetCollectionBuilder.d.ts +18 -0
  219. package/dist/templates/templateQpcrTypes.d.ts +42 -0
  220. package/dist/templates/templateValidators.d.ts +13 -0
  221. package/dist/templates/timeCourseAdapters.d.ts +5 -0
  222. package/dist/templates/timeCourseBuilder.d.ts +2 -0
  223. package/dist/templates/types.d.ts +5 -250
  224. package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +2 -0
  225. package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +2 -0
  226. package/dist/{templates-BorLR_7p.js → templates-DtdUvJ4c.js} +3565 -3411
  227. package/dist/templates-DtdUvJ4c.js.map +1 -0
  228. package/dist/types/auto-group.d.ts +79 -9
  229. package/dist/types/componentLabTypes.d.ts +161 -0
  230. package/dist/types/componentWorkflowTypes.d.ts +150 -0
  231. package/dist/types/components.d.ts +2 -311
  232. package/dist/{useProtocolTemplates-n6AJqSqv.js → useProtocolTemplates-Bm5vyH4_.js} +1220 -454
  233. package/dist/useProtocolTemplates-Bm5vyH4_.js.map +1 -0
  234. package/package.json +1 -1
  235. package/src/__tests__/components/AppTopBar.navigation.test.ts +70 -0
  236. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +53 -0
  237. package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +54 -0
  238. package/src/__tests__/components/PluginWorkspaceView.controls.test.ts +156 -0
  239. package/src/__tests__/components/PluginWorkspaceView.navigation.test.ts +102 -0
  240. package/src/__tests__/components/PluginWorkspaceView.shell.test.ts +41 -0
  241. package/src/__tests__/components/ProtocolStep.presentation.test.ts +31 -0
  242. package/src/__tests__/components/ProtocolStepEditor.state.test.ts +165 -0
  243. package/src/__tests__/components/ProtocolStepParameterField.test.ts +44 -0
  244. package/src/__tests__/components/ReagentList.presentation.test.ts +68 -0
  245. package/src/__tests__/components/SampleSelector.colors.test.ts +49 -0
  246. package/src/__tests__/components/SampleSelector.drag.test.ts +100 -0
  247. package/src/__tests__/components/SampleSelector.groups.test.ts +81 -0
  248. package/src/__tests__/components/SampleSelector.selection.test.ts +70 -0
  249. package/src/__tests__/components/SampleSelector.test.ts +32 -0
  250. package/src/__tests__/components/SampleSelectorSampleRow.test.ts +37 -0
  251. package/src/__tests__/components/ScheduleCalendar.test.ts +44 -0
  252. package/src/__tests__/components/SettingsModal.schema.test.ts +97 -0
  253. package/src/__tests__/components/WellPlate.colors.test.ts +28 -0
  254. package/src/__tests__/components/WellPlate.conditions.test.ts +68 -0
  255. package/src/__tests__/components/WellPlate.geometry.test.ts +54 -0
  256. package/src/__tests__/components/WellPlate.interaction.test.ts +171 -0
  257. package/src/__tests__/components/WellPlate.legend.test.ts +13 -0
  258. package/src/__tests__/components/WellPlate.rendering.test.ts +122 -0
  259. package/src/__tests__/components/WellPlate.sampleDrop.test.ts +70 -0
  260. package/src/__tests__/composables/autoGroup/classify.test.ts +107 -0
  261. package/src/__tests__/composables/autoGroup/columns.test.ts +135 -0
  262. package/src/__tests__/composables/autoGroup/compose.test.ts +227 -0
  263. package/src/__tests__/composables/autoGroup/cooccurrence.test.ts +91 -0
  264. package/src/__tests__/composables/autoGroup/fingerprint.test.ts +50 -0
  265. package/src/__tests__/composables/autoGroup/integration.test.ts +79 -0
  266. package/src/__tests__/composables/autoGroup/template.test.ts +70 -0
  267. package/src/__tests__/composables/autoGroup/tokenize.test.ts +33 -0
  268. package/src/__tests__/composables/useAutoGroup.test.ts +129 -625
  269. package/src/__tests__/composables/useAutoGroupInputSources.test.ts +107 -0
  270. package/src/__tests__/composables/useControlSchema.test.ts +23 -0
  271. package/src/__tests__/composables/useScheduleCalendarLayout.test.ts +89 -0
  272. package/src/__tests__/docs/extractDocsComponents.test.ts +142 -0
  273. package/src/__tests__/docs/extractDocsExports.test.ts +77 -0
  274. package/src/__tests__/docs/extractDocsParsing.test.ts +69 -0
  275. package/src/__tests__/docs/extractDocsTemplates.test.ts +54 -0
  276. package/src/__tests__/docs/extractDocsTheme.test.ts +89 -0
  277. package/src/__tests__/docs/frontendDocsCatalog.test.ts +1 -1
  278. package/src/__tests__/fixtures/auto-group/mixed-lc-ms-batch.txt +187 -0
  279. package/src/components/AppSidebar.vue +2 -6
  280. package/src/components/AppTopBar.navigation.ts +62 -0
  281. package/src/components/AppTopBar.vue +17 -44
  282. package/src/components/AutoGroupModal.story.vue +50 -0
  283. package/src/components/AutoGroupModal.vue +441 -158
  284. package/src/components/ControlWorkspaceView.vue +2 -6
  285. package/src/components/DoseCalculator.vue +13 -73
  286. package/src/components/DoseCalculatorVolumeField.vue +61 -0
  287. package/src/components/ExperimentTimeline.vue +6 -31
  288. package/src/components/FormBuilder.vue +2 -7
  289. package/src/components/PlateMapEditor.vue +32 -106
  290. package/src/components/PluginWorkspaceView.controls.ts +182 -0
  291. package/src/components/PluginWorkspaceView.navigation.ts +106 -0
  292. package/src/components/PluginWorkspaceView.props.ts +174 -0
  293. package/src/components/PluginWorkspaceView.shell.ts +66 -0
  294. package/src/components/PluginWorkspaceView.vue +85 -404
  295. package/src/components/ProtocolStep.presentation.ts +31 -0
  296. package/src/components/ProtocolStepEditor.state.ts +104 -0
  297. package/src/components/ProtocolStepEditor.vue +48 -179
  298. package/src/components/ProtocolStepParameterField.vue +134 -0
  299. package/src/components/ReagentList.presentation.ts +105 -0
  300. package/src/components/ReagentList.vue +16 -79
  301. package/src/components/SampleSelector.colors.ts +43 -0
  302. package/src/components/SampleSelector.drag.ts +164 -0
  303. package/src/components/SampleSelector.groups.ts +109 -0
  304. package/src/components/SampleSelector.selection.ts +103 -0
  305. package/src/components/SampleSelector.vue +82 -349
  306. package/src/components/SampleSelectorSampleRow.vue +64 -0
  307. package/src/components/ScheduleCalendar.vue +44 -199
  308. package/src/components/SettingsModal.schema.ts +71 -0
  309. package/src/components/SettingsModal.vue +16 -46
  310. package/src/components/WellPlate.colors.ts +56 -0
  311. package/src/components/WellPlate.conditions.ts +100 -0
  312. package/src/components/WellPlate.geometry.ts +91 -0
  313. package/src/components/WellPlate.interaction.ts +272 -0
  314. package/src/components/WellPlate.legend.ts +8 -0
  315. package/src/components/WellPlate.rendering.ts +105 -0
  316. package/src/components/WellPlate.sampleDrop.ts +73 -0
  317. package/src/components/WellPlate.vue +102 -550
  318. package/src/components/internal/PlateMapEditorToolbarInternal.vue +128 -0
  319. package/src/composables/autoGroup/classKey.ts +5 -0
  320. package/src/composables/autoGroup/classify.ts +205 -0
  321. package/src/composables/autoGroup/colors.ts +6 -0
  322. package/src/composables/autoGroup/columns.ts +226 -0
  323. package/src/composables/autoGroup/compose.ts +156 -0
  324. package/src/composables/autoGroup/cooccurrence.ts +46 -0
  325. package/src/composables/autoGroup/csv-shim.ts +44 -0
  326. package/src/composables/autoGroup/fingerprint.ts +49 -0
  327. package/src/composables/autoGroup/index.ts +20 -0
  328. package/src/composables/autoGroup/replicatePreGroup.ts +90 -0
  329. package/src/composables/autoGroup/template.ts +126 -0
  330. package/src/composables/autoGroup/tokenize.ts +41 -0
  331. package/src/composables/autoGroup/vocab.json +67 -0
  332. package/src/composables/autoGroupConstants.ts +4 -0
  333. package/src/composables/autoGroupGrouping.ts +148 -0
  334. package/src/composables/controlComponentBindings.ts +80 -0
  335. package/src/composables/controlSchemaAdapters.ts +196 -0
  336. package/src/composables/controlSchemaDoseDesign.ts +215 -0
  337. package/src/composables/controlSchemaFormFields.ts +61 -0
  338. package/src/composables/controlSchemaLayout.ts +59 -0
  339. package/src/composables/controlSchemaModel.ts +163 -0
  340. package/src/composables/controlSchemaNormalize.ts +101 -0
  341. package/src/composables/controlSchemaTypes.ts +364 -0
  342. package/src/composables/controlSchemaUtils.ts +36 -0
  343. package/src/composables/controlWorkspaceOptions.ts +21 -0
  344. package/src/composables/formBuilderSchema.ts +153 -0
  345. package/src/composables/pluginEndpointBuilder.ts +203 -0
  346. package/src/composables/protocolTemplateCatalog.ts +325 -0
  347. package/src/composables/useAutoGroup.ts +395 -549
  348. package/src/composables/useAutoGroupInputSources.ts +147 -0
  349. package/src/composables/useBioTemplateControls.ts +1 -1
  350. package/src/composables/useBioTemplatePresetWorkspace.ts +1 -1
  351. package/src/composables/useBioTemplateWorkspace.ts +1 -1
  352. package/src/composables/useControlSchema.ts +64 -1312
  353. package/src/composables/useControlWorkspace.ts +201 -0
  354. package/src/composables/useForm.ts +5 -187
  355. package/src/composables/useFormBuilder.ts +11 -153
  356. package/src/composables/useFormValidation.ts +154 -0
  357. package/src/composables/usePluginClient.ts +10 -193
  358. package/src/composables/useProtocolTemplates.ts +10 -328
  359. package/src/composables/useScheduleCalendarLayout.ts +287 -0
  360. package/src/styles/components/auto-group-modal.css +248 -310
  361. package/src/templates/adapters.ts +89 -930
  362. package/src/templates/assayLookups.ts +33 -0
  363. package/src/templates/assayMatrixAdapters.ts +78 -0
  364. package/src/templates/assayMatrixBuilder.ts +59 -0
  365. package/src/templates/assayNormalizers.ts +34 -0
  366. package/src/templates/builderDefaults.ts +11 -0
  367. package/src/templates/builderIdUtils.ts +20 -0
  368. package/src/templates/builderPresetControls.ts +165 -0
  369. package/src/templates/builderReadUtils.ts +57 -0
  370. package/src/templates/builders.ts +122 -2350
  371. package/src/templates/calibrationCurveAdapters.ts +59 -0
  372. package/src/templates/calibrationCurveBuilder.ts +99 -0
  373. package/src/templates/calibrationNormalizers.ts +60 -0
  374. package/src/templates/componentBindingCatalog.ts +90 -0
  375. package/src/templates/componentBindingHelpers.ts +93 -0
  376. package/src/templates/componentBindings.ts +12 -461
  377. package/src/templates/componentDoseResponseProps.ts +42 -0
  378. package/src/templates/componentGenericProps.ts +77 -0
  379. package/src/templates/componentPlateHelpers.ts +29 -0
  380. package/src/templates/componentPlateMapProps.ts +32 -0
  381. package/src/templates/componentPropsFactory.ts +21 -0
  382. package/src/templates/componentQpcrPlateProps.ts +28 -0
  383. package/src/templates/componentTargetResolvers.ts +69 -0
  384. package/src/templates/componentTemplateProps.ts +78 -0
  385. package/src/templates/controlSchemaClone.ts +32 -0
  386. package/src/templates/controlSchemaConstants.ts +11 -0
  387. package/src/templates/controlSchemaMerge.ts +40 -0
  388. package/src/templates/controlSchemaTargets.ts +87 -0
  389. package/src/templates/controlSchemaTypes.ts +20 -0
  390. package/src/templates/controlSchemas.ts +22 -704
  391. package/src/templates/defaultBioTemplateBuilder.ts +124 -0
  392. package/src/templates/doseResponseAdapters.ts +45 -0
  393. package/src/templates/doseResponseBuilder.ts +44 -0
  394. package/src/templates/elisaAssayCollectionBuilder.ts +62 -0
  395. package/src/templates/flowCytometryAssayCollectionBuilder.ts +41 -0
  396. package/src/templates/flowCytometryPanelBuilder.ts +53 -0
  397. package/src/templates/flowNormalizers.ts +58 -0
  398. package/src/templates/flowPanelAdapters.ts +58 -0
  399. package/src/templates/instrumentRunAdapterHelpers.ts +94 -0
  400. package/src/templates/instrumentRunAdapters.ts +163 -0
  401. package/src/templates/instrumentRunBuilder.ts +97 -0
  402. package/src/templates/lcmsBatchCollectionBuilder.ts +38 -0
  403. package/src/templates/plateGeometry.ts +62 -0
  404. package/src/templates/plateMapAdapters.ts +36 -0
  405. package/src/templates/plateMapBuilder.ts +43 -0
  406. package/src/templates/presetControlSchemas.ts +258 -0
  407. package/src/templates/protocolAdapters.ts +69 -0
  408. package/src/templates/protocolNormalizers.ts +37 -0
  409. package/src/templates/protocolStepsBuilder.ts +36 -0
  410. package/src/templates/qpcrAdapters.ts +104 -0
  411. package/src/templates/qpcrExpressionCollectionBuilder.ts +33 -0
  412. package/src/templates/qpcrPlateBuilder.ts +96 -0
  413. package/src/templates/reagentAdapters.ts +77 -0
  414. package/src/templates/reagentListBuilder.ts +30 -0
  415. package/src/templates/runNormalizers.ts +63 -0
  416. package/src/templates/sampleNormalizers.ts +58 -0
  417. package/src/templates/samplePrepAdapters.ts +63 -0
  418. package/src/templates/samplePrepBuilder.ts +51 -0
  419. package/src/templates/sampleSheetAdapters.ts +75 -0
  420. package/src/templates/sampleSheetBuilder.ts +23 -0
  421. package/src/templates/targetedMetabolomicsCollectionBuilder.ts +79 -0
  422. package/src/templates/targetedMetabolomicsHelpers.ts +102 -0
  423. package/src/templates/templateAdapterTypes.ts +58 -0
  424. package/src/templates/templateControlSchemas.ts +320 -0
  425. package/src/templates/templateCreateOptions.ts +208 -0
  426. package/src/templates/templateEnvelopes.ts +137 -0
  427. package/src/templates/templatePackCollectionBuilder.ts +23 -0
  428. package/src/templates/templatePresetCollectionBuilder.ts +139 -0
  429. package/src/templates/templateQpcrTypes.ts +48 -0
  430. package/src/templates/templateValidators.ts +414 -0
  431. package/src/templates/timeCourseAdapters.ts +73 -0
  432. package/src/templates/timeCourseBuilder.ts +64 -0
  433. package/src/templates/types.ts +79 -275
  434. package/src/templates/wellPlateScreenCollectionBuilder.ts +36 -0
  435. package/src/templates/westernBlotAssayCollectionBuilder.ts +68 -0
  436. package/src/types/auto-group.ts +107 -9
  437. package/src/types/componentLabTypes.ts +235 -0
  438. package/src/types/componentWorkflowTypes.ts +190 -0
  439. package/src/types/components.ts +74 -424
  440. package/dist/components-BhK-dW99.js.map +0 -1
  441. package/dist/composables-Bg7CFuNz.js.map +0 -1
  442. package/dist/templates-BorLR_7p.js.map +0 -1
  443. package/dist/useProtocolTemplates-n6AJqSqv.js.map +0 -1
@@ -0,0 +1,106 @@
1
+ import { computed, ref, type ComputedRef, type Ref, type WritableComputedRef } from 'vue'
2
+ import type {
3
+ PageSelectorItem,
4
+ PageSelectorItemInput,
5
+ PillNavItem,
6
+ PillNavItemInput,
7
+ } from '../types'
8
+
9
+ type ReadableRef<T> = Readonly<Ref<T>>
10
+
11
+ export interface PluginWorkspaceNavigationOptions {
12
+ activeView: () => string | undefined
13
+ defaultActiveView: () => string | undefined
14
+ currentPillId: () => string | undefined
15
+ currentPageSelectorId: () => string | undefined
16
+ pillNav: () => PillNavItemInput[] | undefined
17
+ pageSelector: () => PageSelectorItemInput[] | undefined
18
+ panelIds: () => string[]
19
+ generatedPillNav: ReadableRef<readonly PillNavItem[]>
20
+ generatedDefaultView: ReadableRef<string>
21
+ emitActiveView: (viewId: string) => void
22
+ emitPageSelectorSelect: (page: PageSelectorItem) => void
23
+ emitPillSelect: (item: PillNavItem) => void
24
+ }
25
+
26
+ export interface PluginWorkspaceNavigation {
27
+ resolvedPillNav: ComputedRef<PillNavItemInput[] | undefined>
28
+ firstConfiguredViewId: ComputedRef<string>
29
+ resolvedActiveView: WritableComputedRef<string>
30
+ resolvedCurrentPillId: ComputedRef<string>
31
+ resolvedCurrentPageSelectorId: ComputedRef<string>
32
+ setActiveView: (viewId: string) => void
33
+ handlePageSelectorSelect: (page: PageSelectorItem) => void
34
+ handlePillSelect: (item: PillNavItem) => void
35
+ }
36
+
37
+ export function usePluginWorkspaceNavigation(
38
+ options: PluginWorkspaceNavigationOptions,
39
+ ): PluginWorkspaceNavigation {
40
+ const internalActiveView = ref(options.defaultActiveView())
41
+
42
+ const resolvedPillNav = computed<PillNavItemInput[] | undefined>(() => {
43
+ if (options.pillNav() !== undefined) return options.pillNav()
44
+ return options.generatedPillNav.value.length > 0
45
+ ? [...options.generatedPillNav.value]
46
+ : undefined
47
+ })
48
+
49
+ const firstConfiguredViewId = computed(() =>
50
+ options.defaultActiveView()
51
+ ?? firstItemId(options.pillNav())
52
+ ?? options.generatedDefaultView.value
53
+ ?? firstItemId(options.pageSelector())
54
+ ?? options.panelIds()[0]
55
+ ?? '',
56
+ )
57
+
58
+ const resolvedActiveView = computed({
59
+ get: () =>
60
+ options.activeView()
61
+ ?? options.currentPillId()
62
+ ?? options.currentPageSelectorId()
63
+ ?? internalActiveView.value
64
+ ?? firstConfiguredViewId.value,
65
+ set: (value: string) => {
66
+ internalActiveView.value = value
67
+ options.emitActiveView(value)
68
+ },
69
+ })
70
+
71
+ const resolvedCurrentPillId = computed(() => options.currentPillId() ?? resolvedActiveView.value)
72
+ const resolvedCurrentPageSelectorId = computed(() =>
73
+ options.currentPageSelectorId() ?? resolvedActiveView.value,
74
+ )
75
+
76
+ function setActiveView(viewId: string) {
77
+ resolvedActiveView.value = viewId
78
+ }
79
+
80
+ function handlePageSelectorSelect(page: PageSelectorItem) {
81
+ setActiveView(page.id)
82
+ options.emitPageSelectorSelect(page)
83
+ }
84
+
85
+ function handlePillSelect(item: PillNavItem) {
86
+ setActiveView(item.id)
87
+ options.emitPillSelect(item)
88
+ }
89
+
90
+ return {
91
+ resolvedPillNav,
92
+ firstConfiguredViewId,
93
+ resolvedActiveView,
94
+ resolvedCurrentPillId,
95
+ resolvedCurrentPageSelectorId,
96
+ setActiveView,
97
+ handlePageSelectorSelect,
98
+ handlePillSelect,
99
+ }
100
+ }
101
+
102
+ function firstItemId(items?: readonly (string | { id: string })[]): string | undefined {
103
+ const item = items?.[0]
104
+ if (item === undefined) return undefined
105
+ return typeof item === 'string' ? item : item.id
106
+ }
@@ -0,0 +1,174 @@
1
+ import type {
2
+ AccountMenuItem,
3
+ PageSelectorItemInput,
4
+ PillNavItemInput,
5
+ PluginSwitcherInfo,
6
+ SidebarToolSection,
7
+ TopBarSettingsConfig,
8
+ TopBarVariant,
9
+ } from '../types'
10
+ import type { FormEnhancements, FormSchema } from '../types/form-builder'
11
+ import type {
12
+ ControlComponentBinding,
13
+ ControlComponentBindingsById,
14
+ ControlComponentBindingsConfig,
15
+ ControlComponentPropsByIdMap,
16
+ ControlComponentPropsMap,
17
+ ControlModel,
18
+ ControlModelBinding,
19
+ ControlSchema,
20
+ ControlWorkspaceOptions,
21
+ } from '../composables/useControlSchema'
22
+ import type { AppExperimentRecord } from '../composables/useAppExperiment'
23
+
24
+ export type PluginWorkspaceSidebarVariant = 'default' | 'analysis'
25
+
26
+ export interface PluginWorkspaceViewProps {
27
+ /** App or plugin title shown in the top bar. */
28
+ title?: string
29
+ /** Secondary copy shown under the title. */
30
+ subtitle?: string
31
+ /** Top bar visual treatment. */
32
+ topBarVariant?: TopBarVariant
33
+ /** Home link used by the top bar brand icon. */
34
+ homePath?: string
35
+ /** Show the default MINT logo when no icon/logo slot is provided. */
36
+ showLogo?: boolean
37
+ /** Preferred route-level page selector entries. */
38
+ pageSelector?: PageSelectorItemInput[]
39
+ /** Active page selector id. Defaults to activeView. */
40
+ currentPageSelectorId?: string
41
+ /** Optional plugin switcher shown in the left navigation position. */
42
+ pluginSwitcher?: PluginSwitcherInfo
43
+ /** Preferred centered navigation for local modes inside the current route. */
44
+ pillNav?: PillNavItemInput[]
45
+ /** Active centered pill id. Defaults to activeView. */
46
+ currentPillId?: string
47
+ /** Show the theme toggle button. */
48
+ showThemeToggle?: boolean
49
+ /** Show the settings button and modal. */
50
+ showSettings?: boolean
51
+ /** Built-in settings modal configuration. */
52
+ settingsConfig?: TopBarSettingsConfig
53
+ /** Show the standalone badge when not integrated into the platform. */
54
+ showStandaloneLabel?: boolean
55
+ /** Custom standalone badge label. */
56
+ standaloneLabel?: string
57
+ /** Account dropdown entries. */
58
+ accountMenu?: AccountMenuItem[]
59
+ /** Show the notifications icon button. */
60
+ showNotifications?: boolean
61
+ /** Draw a notification dot on the notifications icon. */
62
+ hasNotificationDot?: boolean
63
+ /** Show the classic admin shortcut. */
64
+ showAdmin?: boolean
65
+ /** Route used by the classic admin shortcut. */
66
+ adminPath?: string
67
+ /** Show the classic profile button when accountMenu is not provided. */
68
+ showProfile?: boolean
69
+ /** Classic profile display name. */
70
+ userName?: string
71
+ /** Explicit classic profile initial. */
72
+ userInitial?: string
73
+ /** Classic profile email. */
74
+ userEmail?: string
75
+ /** Enable the built-in AppTopBar experiment popover and selector flow. */
76
+ experimentShell?: boolean
77
+ /** Current experiment mirrored into the AppTopBar experiment chip when experimentShell is enabled. */
78
+ experiment?: AppExperimentRecord | null
79
+ /** Save handler used by the AppTopBar experiment chip. Return a message to flash success. */
80
+ experimentSave?: () => string | null | Promise<string | null>
81
+ /** Disable the experiment save action. */
82
+ experimentSaveDisabled?: boolean
83
+ /** Tooltip shown when the experiment save action is disabled. */
84
+ experimentSaveDisabledMessage?: string
85
+
86
+ /** Active workspace view used by top bar navigation and sidebar panels. */
87
+ activeView?: string
88
+ /** Initial active view when activeView is uncontrolled. */
89
+ defaultActiveView?: string
90
+ /** Map of view IDs to sidebar tool sections. */
91
+ panels?: Record<string, SidebarToolSection[]>
92
+ /** Optional FormBuilder schemas keyed by section ID. */
93
+ forms?: Record<string, FormSchema>
94
+ /** Sidebar chrome title. */
95
+ sidebarTitle?: string
96
+ /** Sidebar chrome subtitle. */
97
+ sidebarSubtitle?: string
98
+ /** Optional compact badge/count rendered in the sidebar header. */
99
+ sidebarBadge?: string | number
100
+ /** AppSidebar visual preset. `analysis` matches the LEAF-style MINT analysis sidebar language. */
101
+ sidebarVariant?: PluginWorkspaceSidebarVariant
102
+ /** Sidebar CSS width. Defaults to AppSidebar's variant width. */
103
+ sidebarWidth?: string
104
+ /** Sidebar position in AppLayout. */
105
+ sidebarPosition?: 'left' | 'right'
106
+ /** Convert the sidebar into an SDK-owned mobile overlay below the AppLayout breakpoint. */
107
+ responsiveSidebar?: boolean
108
+ /** Render the sidebar shell even when no panel matches the active view. */
109
+ showSidebarWhenEmpty?: boolean
110
+ /** Disable the built-in sidebar surface entirely. */
111
+ showSidebar?: boolean
112
+ /** DOM id for the AppSidebar scrollable content area. Use with route/tab-owned Teleport sidebars. */
113
+ sidebarContentId?: string
114
+ /** Compact AppSidebar density. */
115
+ dense?: boolean
116
+ /** Show a built-in collapse/expand button in the sidebar chrome. Defaults to AppSidebar's variant behavior. */
117
+ sidebarCollapsible?: boolean
118
+ /** Sidebar width when collapsed. */
119
+ sidebarCollapsedWidth?: string
120
+ /** Accessible label for the sidebar collapse action. */
121
+ sidebarCollapseButtonLabel?: string
122
+ /** Accessible label for the sidebar expand action. */
123
+ sidebarExpandButtonLabel?: string
124
+ /** Floating AppLayout style. */
125
+ floating?: boolean
126
+ /** Optional compact control model for generated sidebar forms. */
127
+ model?: ControlModel | ControlModelBinding
128
+ /** Compact control schema for generated sidebar forms. */
129
+ controls?: ControlSchema
130
+ /** Options passed to compact control schema generation. */
131
+ controlOptions?: ControlWorkspaceOptions
132
+ /** Optional SDK component bindings exposed to the default slot with resolved props. */
133
+ componentBindings?: ControlComponentBindingsConfig
134
+ /** Optional mapping from workspace values to component props exposed to the default slot. */
135
+ componentProps?: ControlComponentPropsMap
136
+ /** Optional named mappings from workspace values to component props exposed to the default slot. */
137
+ componentPropsById?: ControlComponentPropsByIdMap
138
+ /** Shared values for auto-rendered sidebar forms. Supports default v-model. */
139
+ modelValue?: Record<string, unknown>
140
+ /** Shared values for auto-rendered sidebar forms. */
141
+ values?: Record<string, unknown>
142
+ /** Runtime FormBuilder enhancements for auto-rendered sidebar forms. */
143
+ formEnhancements?: FormEnhancements<Record<string, unknown>>
144
+ /** Show submit/cancel actions inside auto-rendered sidebar forms. */
145
+ showFormActions?: boolean
146
+ /** Loading/saving state for auto-rendered sidebar forms. */
147
+ formLoading?: boolean
148
+ /** Disabled state for auto-rendered sidebar forms. */
149
+ formDisabled?: boolean
150
+ /** Readonly state for auto-rendered sidebar forms. */
151
+ formReadonly?: boolean
152
+ /** Size passed to auto-rendered sidebar forms. */
153
+ formSize?: 'sm' | 'md' | 'lg'
154
+ /** Controlled sidebar collapsed state. */
155
+ sidebarCollapsed?: boolean
156
+ /** Initial sidebar collapsed state when uncontrolled. */
157
+ defaultSidebarCollapsed?: boolean
158
+ /** Accessible label for the mobile sidebar toggle. */
159
+ sidebarToggleLabel?: string
160
+ /** Accessible label used when the mobile sidebar is open. */
161
+ sidebarCloseLabel?: string
162
+ }
163
+
164
+ export interface PluginWorkspaceSlotProps {
165
+ activeView: string
166
+ setActiveView: (viewId: string) => void
167
+ values: Record<string, unknown>
168
+ componentBindings: ControlComponentBinding[]
169
+ componentBindingsById: ControlComponentBindingsById
170
+ componentProps: Record<string, unknown>
171
+ componentPropsById: Record<string, Record<string, unknown>>
172
+ }
173
+
174
+ export type PluginWorkspaceForwardedSlotProps = Record<string, unknown>
@@ -0,0 +1,66 @@
1
+ const topBarForwardedSlots = new Set([
2
+ 'icon',
3
+ 'logo',
4
+ 'page-selector-icon',
5
+ 'page-selector-item-icon',
6
+ 'nav',
7
+ 'center',
8
+ 'actions',
9
+ 'account-menu-items',
10
+ 'account-menu-item-icon',
11
+ 'settings-appearance',
12
+ ])
13
+
14
+ const sidebarForwardedSlots = new Set([
15
+ 'header',
16
+ 'collapsed',
17
+ 'footer',
18
+ ])
19
+
20
+ type SlotKeyMap = Readonly<Record<string, unknown>>
21
+
22
+ export interface PluginWorkspaceSidebarSurfaceOptions {
23
+ showSidebar: boolean
24
+ panels: Record<string, unknown>
25
+ forms: Record<string, unknown>
26
+ model: unknown
27
+ controls: unknown
28
+ showSidebarWhenEmpty: boolean
29
+ sidebarContentId?: string
30
+ sidebarTitle?: string
31
+ sidebarSubtitle?: string
32
+ sidebarBadge?: string | number
33
+ hasSidebarSlot: boolean
34
+ sidebarSlotCount: number
35
+ }
36
+
37
+ export function getPluginWorkspaceTopBarSlotNames(slots: SlotKeyMap): string[] {
38
+ return Object.keys(slots).filter(name =>
39
+ topBarForwardedSlots.has(name) || name.startsWith('settings-tab-'),
40
+ )
41
+ }
42
+
43
+ export function getPluginWorkspaceSidebarSlotNames(slots: SlotKeyMap): string[] {
44
+ return Object.keys(slots).filter(name =>
45
+ sidebarForwardedSlots.has(name) || name.startsWith('section-'),
46
+ )
47
+ }
48
+
49
+ export function hasPluginWorkspaceSidebarSurface(
50
+ options: PluginWorkspaceSidebarSurfaceOptions,
51
+ ): boolean {
52
+ if (!options.showSidebar) return false
53
+ return (
54
+ Object.keys(options.panels).length > 0
55
+ || Object.keys(options.forms).length > 0
56
+ || options.model !== undefined
57
+ || options.controls !== undefined
58
+ || options.showSidebarWhenEmpty
59
+ || options.sidebarContentId !== undefined
60
+ || options.sidebarTitle !== undefined
61
+ || options.sidebarSubtitle !== undefined
62
+ || options.sidebarBadge !== undefined
63
+ || options.hasSidebarSlot
64
+ || options.sidebarSlotCount > 0
65
+ )
66
+ }