@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/__tests__/components/AppTopBar.navigation.test.d.ts +1 -0
- package/dist/__tests__/components/DoseCalculatorVolumeField.test.d.ts +1 -0
- package/dist/__tests__/components/PlateMapEditorToolbarInternal.test.d.ts +1 -0
- package/dist/__tests__/components/PluginWorkspaceView.controls.test.d.ts +1 -0
- package/dist/__tests__/components/PluginWorkspaceView.navigation.test.d.ts +1 -0
- package/dist/__tests__/components/PluginWorkspaceView.shell.test.d.ts +1 -0
- package/dist/__tests__/components/ProtocolStep.presentation.test.d.ts +1 -0
- package/dist/__tests__/components/ProtocolStepEditor.state.test.d.ts +1 -0
- package/dist/__tests__/components/ProtocolStepParameterField.test.d.ts +1 -0
- package/dist/__tests__/components/ReagentList.presentation.test.d.ts +1 -0
- package/dist/__tests__/components/SampleSelector.colors.test.d.ts +1 -0
- package/dist/__tests__/components/SampleSelector.drag.test.d.ts +1 -0
- package/dist/__tests__/components/SampleSelector.groups.test.d.ts +1 -0
- package/dist/__tests__/components/SampleSelector.selection.test.d.ts +1 -0
- package/dist/__tests__/components/SampleSelectorSampleRow.test.d.ts +1 -0
- package/dist/__tests__/components/ScheduleCalendar.test.d.ts +1 -0
- package/dist/__tests__/components/SettingsModal.schema.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.colors.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.conditions.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.geometry.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.interaction.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.legend.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.rendering.test.d.ts +1 -0
- package/dist/__tests__/components/WellPlate.sampleDrop.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/classify.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/columns.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/compose.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/cooccurrence.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/fingerprint.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/integration.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/template.test.d.ts +1 -0
- package/dist/__tests__/composables/autoGroup/tokenize.test.d.ts +1 -0
- package/dist/__tests__/composables/useAutoGroupInputSources.test.d.ts +1 -0
- package/dist/__tests__/composables/useScheduleCalendarLayout.test.d.ts +1 -0
- package/dist/__tests__/docs/extractDocsComponents.test.d.ts +1 -0
- package/dist/__tests__/docs/extractDocsExports.test.d.ts +1 -0
- package/dist/__tests__/docs/extractDocsParsing.test.d.ts +1 -0
- package/dist/__tests__/docs/extractDocsTemplates.test.d.ts +1 -0
- package/dist/__tests__/docs/extractDocsTheme.test.d.ts +1 -0
- package/dist/components/AppTopBar.navigation.d.ts +11 -0
- package/dist/components/BaseButton.vue.d.ts +1 -1
- package/dist/components/BaseCheckbox.vue.d.ts +1 -1
- package/dist/components/BaseInput.vue.d.ts +2 -2
- package/dist/components/BasePill.vue.d.ts +1 -1
- package/dist/components/BaseRadioGroup.vue.d.ts +1 -1
- package/dist/components/BaseSelect.vue.d.ts +1 -1
- package/dist/components/BaseSlider.vue.d.ts +2 -2
- package/dist/components/BaseTextarea.vue.d.ts +2 -2
- package/dist/components/BaseToggle.vue.d.ts +1 -1
- package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +2 -2
- package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +1 -1
- package/dist/components/ColorSlider.vue.d.ts +2 -2
- package/dist/components/ConcentrationInput.vue.d.ts +2 -2
- package/dist/components/DatePicker.vue.d.ts +1 -1
- package/dist/components/DateTimePicker.vue.d.ts +2 -2
- package/dist/components/DoseCalculatorVolumeField.vue.d.ts +15 -0
- package/dist/components/DropdownButton.vue.d.ts +1 -1
- package/dist/components/FileUploader.vue.d.ts +2 -2
- package/dist/components/FormulaInput.vue.d.ts +2 -2
- package/dist/components/IconButton.vue.d.ts +1 -1
- package/dist/components/LoadingSpinner.vue.d.ts +1 -1
- package/dist/components/MoleculeInput.vue.d.ts +2 -2
- package/dist/components/MultiSelect.vue.d.ts +1 -1
- package/dist/components/NumberInput.vue.d.ts +1 -1
- package/dist/components/PlateMapEditor.vue.d.ts +6 -6
- package/dist/components/PluginWorkspaceView.controls.d.ts +28 -0
- package/dist/components/PluginWorkspaceView.navigation.d.ts +29 -0
- package/dist/components/PluginWorkspaceView.props.d.ts +151 -0
- package/dist/components/PluginWorkspaceView.shell.d.ts +19 -0
- package/dist/components/PluginWorkspaceView.vue.d.ts +46 -195
- package/dist/components/ProgressBar.vue.d.ts +1 -1
- package/dist/components/ProtocolStep.presentation.d.ts +4 -0
- package/dist/components/ProtocolStepEditor.state.d.ts +18 -0
- package/dist/components/ProtocolStepParameterField.vue.d.ts +12 -0
- package/dist/components/ReagentList.presentation.d.ts +16 -0
- package/dist/components/ResourceCard.vue.d.ts +1 -1
- package/dist/components/SampleSelector.colors.d.ts +13 -0
- package/dist/components/SampleSelector.drag.d.ts +24 -0
- package/dist/components/SampleSelector.groups.d.ts +15 -0
- package/dist/components/SampleSelector.selection.d.ts +26 -0
- package/dist/components/SampleSelector.vue.d.ts +4 -1
- package/dist/components/SampleSelectorSampleRow.vue.d.ts +21 -0
- package/dist/components/SegmentedControl.vue.d.ts +1 -1
- package/dist/components/SequenceInput.vue.d.ts +2 -2
- package/dist/components/SequenceProgressBar.vue.d.ts +1 -1
- package/dist/components/SettingsModal.schema.d.ts +9 -0
- package/dist/components/StatusIndicator.vue.d.ts +1 -1
- package/dist/components/TagsInput.vue.d.ts +2 -2
- package/dist/components/TimePicker.vue.d.ts +2 -2
- package/dist/components/TimeRangeInput.vue.d.ts +1 -1
- package/dist/components/UnitInput.vue.d.ts +2 -2
- package/dist/components/WellPlate.colors.d.ts +9 -0
- package/dist/components/WellPlate.conditions.d.ts +26 -0
- package/dist/components/WellPlate.geometry.d.ts +23 -0
- package/dist/components/WellPlate.interaction.d.ts +71 -0
- package/dist/components/WellPlate.legend.d.ts +2 -0
- package/dist/components/WellPlate.rendering.d.ts +24 -0
- package/dist/components/WellPlate.sampleDrop.d.ts +8 -0
- package/dist/components/WellPlate.vue.d.ts +1 -1
- package/dist/components/index.js +2 -2
- package/dist/components/internal/ActionItemInternal.vue.d.ts +1 -1
- package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +28 -0
- package/dist/{components-BhK-dW99.js → components-DtHA2bgp.js} +3754 -2991
- package/dist/components-DtHA2bgp.js.map +1 -0
- package/dist/composables/autoGroup/classKey.d.ts +4 -0
- package/dist/composables/autoGroup/classify.d.ts +28 -0
- package/dist/composables/autoGroup/colors.d.ts +2 -0
- package/dist/composables/autoGroup/columns.d.ts +10 -0
- package/dist/composables/autoGroup/compose.d.ts +8 -0
- package/dist/composables/autoGroup/cooccurrence.d.ts +2 -0
- package/dist/composables/autoGroup/csv-shim.d.ts +2 -0
- package/dist/composables/autoGroup/fingerprint.d.ts +3 -0
- package/dist/composables/autoGroup/index.d.ts +16 -0
- package/dist/composables/autoGroup/replicatePreGroup.d.ts +38 -0
- package/dist/composables/autoGroup/template.d.ts +15 -0
- package/dist/composables/autoGroup/tokenize.d.ts +8 -0
- package/dist/composables/autoGroupConstants.d.ts +1 -0
- package/dist/composables/autoGroupGrouping.d.ts +3 -0
- package/dist/composables/controlComponentBindings.d.ts +7 -0
- package/dist/composables/controlSchemaAdapters.d.ts +20 -0
- package/dist/composables/controlSchemaDoseDesign.d.ts +11 -0
- package/dist/composables/controlSchemaFormFields.d.ts +3 -0
- package/dist/composables/controlSchemaLayout.d.ts +7 -0
- package/dist/composables/controlSchemaModel.d.ts +5 -0
- package/dist/composables/controlSchemaNormalize.d.ts +15 -0
- package/dist/composables/controlSchemaTypes.d.ts +305 -0
- package/dist/composables/controlSchemaUtils.d.ts +9 -0
- package/dist/composables/controlWorkspaceOptions.d.ts +2 -0
- package/dist/composables/formBuilderSchema.d.ts +18 -0
- package/dist/composables/index.js +3 -3
- package/dist/composables/pluginEndpointBuilder.d.ts +13 -0
- package/dist/composables/protocolTemplateCatalog.d.ts +26 -0
- package/dist/composables/useAutoGroup.d.ts +61 -74
- package/dist/composables/useAutoGroupInputSources.d.ts +32 -0
- package/dist/composables/useBioTemplateControls.d.ts +1 -1
- package/dist/composables/useBioTemplatePresetWorkspace.d.ts +1 -1
- package/dist/composables/useBioTemplateWorkspace.d.ts +1 -1
- package/dist/composables/useControlSchema.d.ts +8 -346
- package/dist/composables/useControlWorkspace.d.ts +5 -0
- package/dist/composables/useForm.d.ts +2 -33
- package/dist/composables/useFormBuilder.d.ts +2 -9
- package/dist/composables/useFormValidation.d.ts +34 -0
- package/dist/composables/usePluginClient.d.ts +1 -4
- package/dist/composables/useProtocolTemplates.d.ts +2 -24
- package/dist/composables/useScheduleCalendarLayout.d.ts +49 -0
- package/dist/{composables-Bg7CFuNz.js → composables-Dlg8jenH.js} +33 -31
- package/dist/composables-Dlg8jenH.js.map +1 -0
- package/dist/index.js +4 -4
- package/dist/install.js +2 -2
- package/dist/styles.css +547 -516
- package/dist/templates/adapters.d.ts +14 -47
- package/dist/templates/assayLookups.d.ts +3 -0
- package/dist/templates/assayMatrixAdapters.d.ts +6 -0
- package/dist/templates/assayMatrixBuilder.d.ts +2 -0
- package/dist/templates/assayNormalizers.d.ts +4 -0
- package/dist/templates/builderDefaults.d.ts +1 -0
- package/dist/templates/builderIdUtils.d.ts +4 -0
- package/dist/templates/builderPresetControls.d.ts +10 -0
- package/dist/templates/builderReadUtils.d.ts +8 -0
- package/dist/templates/builders.d.ts +26 -67
- package/dist/templates/calibrationCurveAdapters.d.ts +4 -0
- package/dist/templates/calibrationCurveBuilder.d.ts +2 -0
- package/dist/templates/calibrationNormalizers.d.ts +5 -0
- package/dist/templates/componentBindingCatalog.d.ts +25 -0
- package/dist/templates/componentBindingHelpers.d.ts +17 -0
- package/dist/templates/componentDoseResponseProps.d.ts +3 -0
- package/dist/templates/componentGenericProps.d.ts +8 -0
- package/dist/templates/componentPlateHelpers.d.ts +5 -0
- package/dist/templates/componentPlateMapProps.d.ts +3 -0
- package/dist/templates/componentPropsFactory.d.ts +3 -0
- package/dist/templates/componentQpcrPlateProps.d.ts +3 -0
- package/dist/templates/componentTargetResolvers.d.ts +5 -0
- package/dist/templates/componentTemplateProps.d.ts +3 -0
- package/dist/templates/controlSchemaClone.d.ts +4 -0
- package/dist/templates/controlSchemaConstants.d.ts +10 -0
- package/dist/templates/controlSchemaMerge.d.ts +3 -0
- package/dist/templates/controlSchemaTargets.d.ts +17 -0
- package/dist/templates/controlSchemaTypes.d.ts +4 -0
- package/dist/templates/controlSchemas.d.ts +4 -4
- package/dist/templates/defaultBioTemplateBuilder.d.ts +2 -0
- package/dist/templates/doseResponseAdapters.d.ts +4 -0
- package/dist/templates/doseResponseBuilder.d.ts +2 -0
- package/dist/templates/elisaAssayCollectionBuilder.d.ts +2 -0
- package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +2 -0
- package/dist/templates/flowCytometryPanelBuilder.d.ts +2 -0
- package/dist/templates/flowNormalizers.d.ts +8 -0
- package/dist/templates/flowPanelAdapters.d.ts +4 -0
- package/dist/templates/index.js +1 -1
- package/dist/templates/instrumentRunAdapterHelpers.d.ts +8 -0
- package/dist/templates/instrumentRunAdapters.d.ts +8 -0
- package/dist/templates/instrumentRunBuilder.d.ts +2 -0
- package/dist/templates/lcmsBatchCollectionBuilder.d.ts +2 -0
- package/dist/templates/plateGeometry.d.ts +4 -0
- package/dist/templates/plateMapAdapters.d.ts +3 -0
- package/dist/templates/plateMapBuilder.d.ts +2 -0
- package/dist/templates/presetControlSchemas.d.ts +534 -0
- package/dist/templates/protocolAdapters.d.ts +5 -0
- package/dist/templates/protocolNormalizers.d.ts +6 -0
- package/dist/templates/protocolStepsBuilder.d.ts +2 -0
- package/dist/templates/qpcrAdapters.d.ts +5 -0
- package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +2 -0
- package/dist/templates/qpcrPlateBuilder.d.ts +2 -0
- package/dist/templates/reagentAdapters.d.ts +5 -0
- package/dist/templates/reagentListBuilder.d.ts +2 -0
- package/dist/templates/runNormalizers.d.ts +10 -0
- package/dist/templates/sampleNormalizers.d.ts +4 -0
- package/dist/templates/samplePrepAdapters.d.ts +4 -0
- package/dist/templates/samplePrepBuilder.d.ts +2 -0
- package/dist/templates/sampleSheetAdapters.d.ts +5 -0
- package/dist/templates/sampleSheetBuilder.d.ts +2 -0
- package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +2 -0
- package/dist/templates/targetedMetabolomicsHelpers.d.ts +5 -0
- package/dist/templates/templateAdapterTypes.d.ts +48 -0
- package/dist/templates/templateControlSchemas.d.ts +400 -0
- package/dist/templates/templateCreateOptions.d.ts +165 -0
- package/dist/templates/templateEnvelopes.d.ts +9 -0
- package/dist/templates/templatePackCollectionBuilder.d.ts +2 -0
- package/dist/templates/templatePresetCollectionBuilder.d.ts +18 -0
- package/dist/templates/templateQpcrTypes.d.ts +42 -0
- package/dist/templates/templateValidators.d.ts +13 -0
- package/dist/templates/timeCourseAdapters.d.ts +5 -0
- package/dist/templates/timeCourseBuilder.d.ts +2 -0
- package/dist/templates/types.d.ts +5 -250
- package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +2 -0
- package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +2 -0
- package/dist/{templates-BorLR_7p.js → templates-DtdUvJ4c.js} +3565 -3411
- package/dist/templates-DtdUvJ4c.js.map +1 -0
- package/dist/types/auto-group.d.ts +79 -9
- package/dist/types/componentLabTypes.d.ts +161 -0
- package/dist/types/componentWorkflowTypes.d.ts +150 -0
- package/dist/types/components.d.ts +2 -311
- package/dist/{useProtocolTemplates-n6AJqSqv.js → useProtocolTemplates-Bm5vyH4_.js} +1220 -454
- package/dist/useProtocolTemplates-Bm5vyH4_.js.map +1 -0
- package/package.json +1 -1
- package/src/__tests__/components/AppTopBar.navigation.test.ts +70 -0
- package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +53 -0
- package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +54 -0
- package/src/__tests__/components/PluginWorkspaceView.controls.test.ts +156 -0
- package/src/__tests__/components/PluginWorkspaceView.navigation.test.ts +102 -0
- package/src/__tests__/components/PluginWorkspaceView.shell.test.ts +41 -0
- package/src/__tests__/components/ProtocolStep.presentation.test.ts +31 -0
- package/src/__tests__/components/ProtocolStepEditor.state.test.ts +165 -0
- package/src/__tests__/components/ProtocolStepParameterField.test.ts +44 -0
- package/src/__tests__/components/ReagentList.presentation.test.ts +68 -0
- package/src/__tests__/components/SampleSelector.colors.test.ts +49 -0
- package/src/__tests__/components/SampleSelector.drag.test.ts +100 -0
- package/src/__tests__/components/SampleSelector.groups.test.ts +81 -0
- package/src/__tests__/components/SampleSelector.selection.test.ts +70 -0
- package/src/__tests__/components/SampleSelector.test.ts +32 -0
- package/src/__tests__/components/SampleSelectorSampleRow.test.ts +37 -0
- package/src/__tests__/components/ScheduleCalendar.test.ts +44 -0
- package/src/__tests__/components/SettingsModal.schema.test.ts +97 -0
- package/src/__tests__/components/WellPlate.colors.test.ts +28 -0
- package/src/__tests__/components/WellPlate.conditions.test.ts +68 -0
- package/src/__tests__/components/WellPlate.geometry.test.ts +54 -0
- package/src/__tests__/components/WellPlate.interaction.test.ts +171 -0
- package/src/__tests__/components/WellPlate.legend.test.ts +13 -0
- package/src/__tests__/components/WellPlate.rendering.test.ts +122 -0
- package/src/__tests__/components/WellPlate.sampleDrop.test.ts +70 -0
- package/src/__tests__/composables/autoGroup/classify.test.ts +107 -0
- package/src/__tests__/composables/autoGroup/columns.test.ts +135 -0
- package/src/__tests__/composables/autoGroup/compose.test.ts +227 -0
- package/src/__tests__/composables/autoGroup/cooccurrence.test.ts +91 -0
- package/src/__tests__/composables/autoGroup/fingerprint.test.ts +50 -0
- package/src/__tests__/composables/autoGroup/integration.test.ts +79 -0
- package/src/__tests__/composables/autoGroup/template.test.ts +70 -0
- package/src/__tests__/composables/autoGroup/tokenize.test.ts +33 -0
- package/src/__tests__/composables/useAutoGroup.test.ts +129 -625
- package/src/__tests__/composables/useAutoGroupInputSources.test.ts +107 -0
- package/src/__tests__/composables/useControlSchema.test.ts +23 -0
- package/src/__tests__/composables/useScheduleCalendarLayout.test.ts +89 -0
- package/src/__tests__/docs/extractDocsComponents.test.ts +142 -0
- package/src/__tests__/docs/extractDocsExports.test.ts +77 -0
- package/src/__tests__/docs/extractDocsParsing.test.ts +69 -0
- package/src/__tests__/docs/extractDocsTemplates.test.ts +54 -0
- package/src/__tests__/docs/extractDocsTheme.test.ts +89 -0
- package/src/__tests__/docs/frontendDocsCatalog.test.ts +1 -1
- package/src/__tests__/fixtures/auto-group/mixed-lc-ms-batch.txt +187 -0
- package/src/components/AppSidebar.vue +2 -6
- package/src/components/AppTopBar.navigation.ts +62 -0
- package/src/components/AppTopBar.vue +17 -44
- package/src/components/AutoGroupModal.story.vue +50 -0
- package/src/components/AutoGroupModal.vue +441 -158
- package/src/components/ControlWorkspaceView.vue +2 -6
- package/src/components/DoseCalculator.vue +13 -73
- package/src/components/DoseCalculatorVolumeField.vue +61 -0
- package/src/components/ExperimentTimeline.vue +6 -31
- package/src/components/FormBuilder.vue +2 -7
- package/src/components/PlateMapEditor.vue +32 -106
- package/src/components/PluginWorkspaceView.controls.ts +182 -0
- package/src/components/PluginWorkspaceView.navigation.ts +106 -0
- package/src/components/PluginWorkspaceView.props.ts +174 -0
- package/src/components/PluginWorkspaceView.shell.ts +66 -0
- package/src/components/PluginWorkspaceView.vue +85 -404
- package/src/components/ProtocolStep.presentation.ts +31 -0
- package/src/components/ProtocolStepEditor.state.ts +104 -0
- package/src/components/ProtocolStepEditor.vue +48 -179
- package/src/components/ProtocolStepParameterField.vue +134 -0
- package/src/components/ReagentList.presentation.ts +105 -0
- package/src/components/ReagentList.vue +16 -79
- package/src/components/SampleSelector.colors.ts +43 -0
- package/src/components/SampleSelector.drag.ts +164 -0
- package/src/components/SampleSelector.groups.ts +109 -0
- package/src/components/SampleSelector.selection.ts +103 -0
- package/src/components/SampleSelector.vue +82 -349
- package/src/components/SampleSelectorSampleRow.vue +64 -0
- package/src/components/ScheduleCalendar.vue +44 -199
- package/src/components/SettingsModal.schema.ts +71 -0
- package/src/components/SettingsModal.vue +16 -46
- package/src/components/WellPlate.colors.ts +56 -0
- package/src/components/WellPlate.conditions.ts +100 -0
- package/src/components/WellPlate.geometry.ts +91 -0
- package/src/components/WellPlate.interaction.ts +272 -0
- package/src/components/WellPlate.legend.ts +8 -0
- package/src/components/WellPlate.rendering.ts +105 -0
- package/src/components/WellPlate.sampleDrop.ts +73 -0
- package/src/components/WellPlate.vue +102 -550
- package/src/components/internal/PlateMapEditorToolbarInternal.vue +128 -0
- package/src/composables/autoGroup/classKey.ts +5 -0
- package/src/composables/autoGroup/classify.ts +205 -0
- package/src/composables/autoGroup/colors.ts +6 -0
- package/src/composables/autoGroup/columns.ts +226 -0
- package/src/composables/autoGroup/compose.ts +156 -0
- package/src/composables/autoGroup/cooccurrence.ts +46 -0
- package/src/composables/autoGroup/csv-shim.ts +44 -0
- package/src/composables/autoGroup/fingerprint.ts +49 -0
- package/src/composables/autoGroup/index.ts +20 -0
- package/src/composables/autoGroup/replicatePreGroup.ts +90 -0
- package/src/composables/autoGroup/template.ts +126 -0
- package/src/composables/autoGroup/tokenize.ts +41 -0
- package/src/composables/autoGroup/vocab.json +67 -0
- package/src/composables/autoGroupConstants.ts +4 -0
- package/src/composables/autoGroupGrouping.ts +148 -0
- package/src/composables/controlComponentBindings.ts +80 -0
- package/src/composables/controlSchemaAdapters.ts +196 -0
- package/src/composables/controlSchemaDoseDesign.ts +215 -0
- package/src/composables/controlSchemaFormFields.ts +61 -0
- package/src/composables/controlSchemaLayout.ts +59 -0
- package/src/composables/controlSchemaModel.ts +163 -0
- package/src/composables/controlSchemaNormalize.ts +101 -0
- package/src/composables/controlSchemaTypes.ts +364 -0
- package/src/composables/controlSchemaUtils.ts +36 -0
- package/src/composables/controlWorkspaceOptions.ts +21 -0
- package/src/composables/formBuilderSchema.ts +153 -0
- package/src/composables/pluginEndpointBuilder.ts +203 -0
- package/src/composables/protocolTemplateCatalog.ts +325 -0
- package/src/composables/useAutoGroup.ts +395 -549
- package/src/composables/useAutoGroupInputSources.ts +147 -0
- package/src/composables/useBioTemplateControls.ts +1 -1
- package/src/composables/useBioTemplatePresetWorkspace.ts +1 -1
- package/src/composables/useBioTemplateWorkspace.ts +1 -1
- package/src/composables/useControlSchema.ts +64 -1312
- package/src/composables/useControlWorkspace.ts +201 -0
- package/src/composables/useForm.ts +5 -187
- package/src/composables/useFormBuilder.ts +11 -153
- package/src/composables/useFormValidation.ts +154 -0
- package/src/composables/usePluginClient.ts +10 -193
- package/src/composables/useProtocolTemplates.ts +10 -328
- package/src/composables/useScheduleCalendarLayout.ts +287 -0
- package/src/styles/components/auto-group-modal.css +248 -310
- package/src/templates/adapters.ts +89 -930
- package/src/templates/assayLookups.ts +33 -0
- package/src/templates/assayMatrixAdapters.ts +78 -0
- package/src/templates/assayMatrixBuilder.ts +59 -0
- package/src/templates/assayNormalizers.ts +34 -0
- package/src/templates/builderDefaults.ts +11 -0
- package/src/templates/builderIdUtils.ts +20 -0
- package/src/templates/builderPresetControls.ts +165 -0
- package/src/templates/builderReadUtils.ts +57 -0
- package/src/templates/builders.ts +122 -2350
- package/src/templates/calibrationCurveAdapters.ts +59 -0
- package/src/templates/calibrationCurveBuilder.ts +99 -0
- package/src/templates/calibrationNormalizers.ts +60 -0
- package/src/templates/componentBindingCatalog.ts +90 -0
- package/src/templates/componentBindingHelpers.ts +93 -0
- package/src/templates/componentBindings.ts +12 -461
- package/src/templates/componentDoseResponseProps.ts +42 -0
- package/src/templates/componentGenericProps.ts +77 -0
- package/src/templates/componentPlateHelpers.ts +29 -0
- package/src/templates/componentPlateMapProps.ts +32 -0
- package/src/templates/componentPropsFactory.ts +21 -0
- package/src/templates/componentQpcrPlateProps.ts +28 -0
- package/src/templates/componentTargetResolvers.ts +69 -0
- package/src/templates/componentTemplateProps.ts +78 -0
- package/src/templates/controlSchemaClone.ts +32 -0
- package/src/templates/controlSchemaConstants.ts +11 -0
- package/src/templates/controlSchemaMerge.ts +40 -0
- package/src/templates/controlSchemaTargets.ts +87 -0
- package/src/templates/controlSchemaTypes.ts +20 -0
- package/src/templates/controlSchemas.ts +22 -704
- package/src/templates/defaultBioTemplateBuilder.ts +124 -0
- package/src/templates/doseResponseAdapters.ts +45 -0
- package/src/templates/doseResponseBuilder.ts +44 -0
- package/src/templates/elisaAssayCollectionBuilder.ts +62 -0
- package/src/templates/flowCytometryAssayCollectionBuilder.ts +41 -0
- package/src/templates/flowCytometryPanelBuilder.ts +53 -0
- package/src/templates/flowNormalizers.ts +58 -0
- package/src/templates/flowPanelAdapters.ts +58 -0
- package/src/templates/instrumentRunAdapterHelpers.ts +94 -0
- package/src/templates/instrumentRunAdapters.ts +163 -0
- package/src/templates/instrumentRunBuilder.ts +97 -0
- package/src/templates/lcmsBatchCollectionBuilder.ts +38 -0
- package/src/templates/plateGeometry.ts +62 -0
- package/src/templates/plateMapAdapters.ts +36 -0
- package/src/templates/plateMapBuilder.ts +43 -0
- package/src/templates/presetControlSchemas.ts +258 -0
- package/src/templates/protocolAdapters.ts +69 -0
- package/src/templates/protocolNormalizers.ts +37 -0
- package/src/templates/protocolStepsBuilder.ts +36 -0
- package/src/templates/qpcrAdapters.ts +104 -0
- package/src/templates/qpcrExpressionCollectionBuilder.ts +33 -0
- package/src/templates/qpcrPlateBuilder.ts +96 -0
- package/src/templates/reagentAdapters.ts +77 -0
- package/src/templates/reagentListBuilder.ts +30 -0
- package/src/templates/runNormalizers.ts +63 -0
- package/src/templates/sampleNormalizers.ts +58 -0
- package/src/templates/samplePrepAdapters.ts +63 -0
- package/src/templates/samplePrepBuilder.ts +51 -0
- package/src/templates/sampleSheetAdapters.ts +75 -0
- package/src/templates/sampleSheetBuilder.ts +23 -0
- package/src/templates/targetedMetabolomicsCollectionBuilder.ts +79 -0
- package/src/templates/targetedMetabolomicsHelpers.ts +102 -0
- package/src/templates/templateAdapterTypes.ts +58 -0
- package/src/templates/templateControlSchemas.ts +320 -0
- package/src/templates/templateCreateOptions.ts +208 -0
- package/src/templates/templateEnvelopes.ts +137 -0
- package/src/templates/templatePackCollectionBuilder.ts +23 -0
- package/src/templates/templatePresetCollectionBuilder.ts +139 -0
- package/src/templates/templateQpcrTypes.ts +48 -0
- package/src/templates/templateValidators.ts +414 -0
- package/src/templates/timeCourseAdapters.ts +73 -0
- package/src/templates/timeCourseBuilder.ts +64 -0
- package/src/templates/types.ts +79 -275
- package/src/templates/wellPlateScreenCollectionBuilder.ts +36 -0
- package/src/templates/westernBlotAssayCollectionBuilder.ts +68 -0
- package/src/types/auto-group.ts +107 -9
- package/src/types/componentLabTypes.ts +235 -0
- package/src/types/componentWorkflowTypes.ts +190 -0
- package/src/types/components.ts +74 -424
- package/dist/components-BhK-dW99.js.map +0 -1
- package/dist/composables-Bg7CFuNz.js.map +0 -1
- package/dist/templates-BorLR_7p.js.map +0 -1
- package/dist/useProtocolTemplates-n6AJqSqv.js.map +0 -1
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import { extractTemplateCollection } from './templateEnvelopes'
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toReagentListItems,
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toTimeCourseSteps,
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toWellPlateWells,
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} from './adapters'
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import {
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getBioTemplateInfo,
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getBioTemplatePresetInfo,
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getBioTemplatePackInfo,
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} from './componentBindingHelpers'
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import { templateComponentBindings } from './componentBindingCatalog'
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import { propsForTemplate } from './componentTemplateProps'
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BioTemplateEnvelope,
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ProtocolStepsTemplate,
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export type BioTemplateComponentTarget =
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const templateComponentBindings = {
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'plate-map': [
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binding('plate-map', 'PlateMapEditor', ['toPlateMapEditorState'], ['modelValue', 'format', 'samples'], 'Edit plate layouts from plate-map template data.'),
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binding('plate-map', 'WellPlate', ['toWellPlateWells'], ['format', 'wells', 'sampleColors', 'legendItems'], 'Render the active plate as a well grid.'),
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],
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'sample-sheet': [
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binding('sample-sheet', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render sample metadata as a sortable table.'),
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binding('sample-sheet', 'SampleSelector', ['toSampleOptions'], ['samples', 'modelValue'], 'Select samples from sample-sheet records.'),
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],
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'sample-prep': [
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binding('sample-prep', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render preparation steps as a table.'),
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],
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'dose-response': [
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binding('dose-response', 'DoseCalculator', ['toDoseConditions'], ['mode', 'targetWells'], 'Configure serial dilution and apply concentrations to wells.'),
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binding('dose-response', 'WellPlate', ['toDoseLayoutState'], ['format', 'wells', 'sampleColors', 'legendItems'], 'Render the optional dose-response plate layout.'),
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],
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'calibration-curve': [
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binding('calibration-curve', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render standards, QC, blanks, and response values.'),
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],
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'time-course': [
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binding('time-course', 'ExperimentTimeline', ['toTimeCourseSteps'], ['modelValue', 'orientation'], 'Render time points as an ordered timeline.'),
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binding('time-course', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render longitudinal samples as a table.'),
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],
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'protocol-steps': [
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binding('protocol-steps', 'ExperimentTimeline', ['toProtocolSteps'], ['modelValue', 'orientation', 'editable'], 'Render protocol steps as an editable timeline.'),
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binding('protocol-steps', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render protocol steps as a table.'),
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],
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'assay-matrix': [
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binding('assay-matrix', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render sample-by-feature measurements.'),
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binding('assay-matrix', 'SampleSelector', ['toAssayMatrixSampleOptions'], ['samples', 'modelValue'], 'Select samples from assay-matrix records.'),
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],
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'reagent-list': [
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binding('reagent-list', 'ReagentList', ['toReagentListItems'], ['modelValue'], 'Render reagents with lot, storage, and stock metadata.'),
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binding('reagent-list', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render reagents as a table.'),
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],
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'flow-cytometry-panel': [
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binding('flow-cytometry-panel', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render markers, fluorophores, detectors, and controls.'),
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],
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'instrument-run': [
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binding('instrument-run', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render acquisition queues, methods, QC, and run status.'),
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binding(
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'ScheduleCalendar',
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['toInstrumentRunScheduleEvents'],
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['modelValue', 'events', 'view', 'readonly', 'showNavigation', 'showViewToggle'],
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'Render acquisition queues as a scheduled run calendar.',
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binding(
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'instrument-run',
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'ExperimentTimeline',
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['toInstrumentRunSteps'],
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['modelValue', 'orientation', 'showDuration', 'editable'],
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'Render acquisition queues as an ordered run timeline.',
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'qpcr-plate': [
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binding('qpcr-plate', 'WellPlate', ['toQpcrWellPlateWells'], ['format', 'wells', 'sampleColors', 'legendItems'], 'Render qPCR reactions on a well plate.'),
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binding('qpcr-plate', 'DataFrame', ['toTemplateDataFrame'], ['data', 'columns', 'rowKey'], 'Render qPCR reactions, targets, controls, and Cq values.'),
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} satisfies Record<TemplateId, readonly BioTemplateComponentBinding[]>
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export function listBioTemplateComponentBindings(): Record<TemplateId, BioTemplateComponentBinding[]> {
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}
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function propsForTemplate(template: BioTemplateEnvelope<unknown>): BioTemplateComponentPropsBinding[] {
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switch (template.template_id) {
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case 'plate-map':
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return plateMapProps(template as PlateMapTemplate)
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case 'sample-sheet':
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return [
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dataFrameProps(template as DataFrameTemplate),
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sampleSelectorProps(template as SampleSheetTemplate),
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case 'sample-prep':
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case 'calibration-curve':
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case 'flow-cytometry-panel':
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return [dataFrameProps(template as DataFrameTemplate)]
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case 'assay-matrix':
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return [
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dataFrameProps(template as DataFrameTemplate),
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assayMatrixSampleSelectorProps(template as AssayMatrixTemplate),
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case 'instrument-run':
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return [
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dataFrameProps(template as DataFrameTemplate),
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scheduleCalendarProps(template as InstrumentRunTemplate),
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timelineProps(template as InstrumentRunTemplate, toInstrumentRunSteps(template as InstrumentRunTemplate)),
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case 'dose-response':
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return doseResponseProps(template as DoseResponseTemplate)
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case 'time-course':
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return [
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timelineProps(template as TimeCourseTemplate, toTimeCourseSteps(template as TimeCourseTemplate)),
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dataFrameProps(template as DataFrameTemplate),
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]
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case 'protocol-steps':
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timelineProps(template as ProtocolStepsTemplate, toProtocolSteps(template as ProtocolStepsTemplate), true),
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dataFrameProps(template as DataFrameTemplate),
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case 'reagent-list':
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return [
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reagentListProps(template as ReagentListTemplate),
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dataFrameProps(template as DataFrameTemplate),
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]
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case 'qpcr-plate':
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return qpcrPlateProps(template as QpcrPlateTemplate)
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default:
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return []
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}
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}
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function plateMapProps(template: PlateMapTemplate): BioTemplateComponentPropsBinding[] {
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const state = toPlateMapEditorState(template)
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const plate = activePlateFromState(state)
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return [
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propsBinding('plate-map', 'PlateMapEditor', {
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format: plate.format,
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samples: state.samples,
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}),
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propsBinding('plate-map', 'WellPlate', {
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format: plate.format,
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wells: toWellPlateWells(template),
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sampleColors: sampleColorsFromPlateState(state),
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legendItems: legendItemsFromPlateState(state),
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showLegend: true,
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showSampleTypeIndicator: true,
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}),
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]
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}
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function doseResponseProps(template: DoseResponseTemplate): BioTemplateComponentPropsBinding[] {
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const conditions = toDoseConditions(template)
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const layout = toDoseLayoutState(template)
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const targetWells = layout ? Object.keys(activePlateFromState(layout).wells) : []
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const props = [
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propsBinding('dose-response', 'DoseCalculator', {
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mode: 'serial',
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targetWells,
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disabled: conditions.length === 0,
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}),
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]
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if (layout) {
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const plate = activePlateFromState(layout)
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props.push(propsBinding('dose-response', 'WellPlate', {
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format: plate.format,
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wells: plate.wells,
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sampleColors: sampleColorsFromPlateState(layout),
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legendItems: conditions.map(condition => ({
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type: condition.label,
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label: condition.label,
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color: condition.color,
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})),
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showLegend: true,
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showSampleTypeIndicator: true,
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}))
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}
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return props
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}
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function qpcrPlateProps(template: QpcrPlateTemplate): BioTemplateComponentPropsBinding[] {
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const data = getTemplateData(template, 'qpcr-plate')
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const frame = dataFrameProps(template)
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return [
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propsBinding('qpcr-plate', 'WellPlate', {
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format: data.format,
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wells: toQpcrWellPlateWells(template),
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sampleColors: Object.fromEntries(data.samples.map((sample, index) => [sample.sampleId, colorForIndex(index)])),
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legendItems: data.samples.map((sample, index): WellLegendItem => ({
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type: sample.sampleId,
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label: sample.name ?? sample.sampleId,
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color: colorForIndex(index),
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})),
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showLegend: true,
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showSampleTypeIndicator: true,
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}),
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456
|
-
frame,
|
|
457
|
-
]
|
|
458
|
-
}
|
|
459
|
-
|
|
460
|
-
function dataFrameProps(template: DataFrameTemplate): BioTemplateComponentPropsBinding {
|
|
461
|
-
const frame = toTemplateDataFrame(template)
|
|
462
|
-
return propsBinding(template.template_id as TemplateId, 'DataFrame', {
|
|
463
|
-
...frame,
|
|
464
|
-
searchable: true,
|
|
465
|
-
sortable: true,
|
|
466
|
-
size: 'sm',
|
|
467
|
-
})
|
|
468
|
-
}
|
|
469
|
-
|
|
470
|
-
function sampleSelectorProps(template: SampleSheetTemplate): BioTemplateComponentPropsBinding {
|
|
471
|
-
const options = toSampleOptions(template)
|
|
472
|
-
return propsBinding('sample-sheet', 'SampleSelector', {
|
|
473
|
-
samples: options.map(option => option.label),
|
|
474
|
-
modelValue: [],
|
|
475
|
-
})
|
|
476
|
-
}
|
|
477
|
-
|
|
478
|
-
function assayMatrixSampleSelectorProps(template: AssayMatrixTemplate): BioTemplateComponentPropsBinding {
|
|
479
|
-
const options = toAssayMatrixSampleOptions(template)
|
|
480
|
-
return propsBinding('assay-matrix', 'SampleSelector', {
|
|
481
|
-
samples: options.map(option => option.label),
|
|
482
|
-
modelValue: [],
|
|
483
|
-
})
|
|
484
|
-
}
|
|
485
|
-
|
|
486
|
-
function timelineProps(
|
|
487
|
-
template: TimeCourseTemplate | ProtocolStepsTemplate | InstrumentRunTemplate,
|
|
488
|
-
steps: unknown[],
|
|
489
|
-
editable = false
|
|
490
|
-
): BioTemplateComponentPropsBinding {
|
|
491
|
-
return propsBinding(template.template_id as TemplateId, 'ExperimentTimeline', {
|
|
492
|
-
modelValue: steps,
|
|
493
|
-
orientation: 'vertical',
|
|
494
|
-
editable,
|
|
495
|
-
})
|
|
496
|
-
}
|
|
497
|
-
|
|
498
|
-
function scheduleCalendarProps(template: InstrumentRunTemplate): BioTemplateComponentPropsBinding {
|
|
499
|
-
const events = toInstrumentRunScheduleEvents(template)
|
|
500
|
-
return propsBinding('instrument-run', 'ScheduleCalendar', {
|
|
501
|
-
modelValue: events[0]?.start,
|
|
502
|
-
events,
|
|
503
|
-
view: 'day',
|
|
504
|
-
readonly: true,
|
|
505
|
-
showNavigation: false,
|
|
506
|
-
showViewToggle: false,
|
|
507
|
-
})
|
|
508
|
-
}
|
|
509
|
-
|
|
510
|
-
function reagentListProps(template: ReagentListTemplate): BioTemplateComponentPropsBinding {
|
|
511
|
-
return propsBinding('reagent-list', 'ReagentList', {
|
|
512
|
-
modelValue: toReagentListItems(template),
|
|
513
|
-
searchable: true,
|
|
514
|
-
sortable: true,
|
|
515
|
-
})
|
|
516
|
-
}
|
|
517
|
-
|
|
518
|
-
function propsBinding(
|
|
519
|
-
templateId: TemplateId,
|
|
520
|
-
component: string,
|
|
521
|
-
propsObject: Record<string, unknown>
|
|
522
|
-
): BioTemplateComponentPropsBinding {
|
|
523
|
-
const matched = templateComponentBindings[templateId].find(binding => binding.component === component)
|
|
524
|
-
if (!matched) {
|
|
525
|
-
throw new Error(`No component binding registered for '${templateId}' and '${component}'.`)
|
|
526
|
-
}
|
|
527
|
-
return {
|
|
528
|
-
...cloneBinding(matched),
|
|
529
|
-
propsObject,
|
|
530
|
-
}
|
|
531
|
-
}
|
|
532
|
-
|
|
533
|
-
function resolveComponentTemplateIds(target: BioTemplateComponentTarget): TemplateId[] {
|
|
534
|
-
if (typeof target === 'string') {
|
|
535
|
-
const preset = getBioTemplatePresetInfo(target)
|
|
536
|
-
if (preset) return [...preset.templates]
|
|
537
|
-
const pack = getBioTemplatePackInfo(target)
|
|
538
|
-
if (pack) return [...pack.templates]
|
|
539
|
-
const template = getBioTemplateInfo(target)
|
|
540
|
-
return template ? [template.template_id] : []
|
|
541
|
-
}
|
|
542
|
-
|
|
543
|
-
if (isTemplateEnvelope(target)) {
|
|
544
|
-
const template = getBioTemplateInfo(target.template_id)
|
|
545
|
-
return template ? [template.template_id] : []
|
|
546
|
-
}
|
|
547
|
-
|
|
548
|
-
const presetName = collectionPresetName(target)
|
|
549
|
-
if (presetName) {
|
|
550
|
-
const preset = getBioTemplatePresetInfo(presetName)
|
|
551
|
-
if (preset) return [...preset.templates]
|
|
552
|
-
}
|
|
553
|
-
|
|
554
|
-
const packName = collectionPackName(target)
|
|
555
|
-
if (packName) {
|
|
556
|
-
const pack = getBioTemplatePackInfo(packName)
|
|
557
|
-
if (pack) return [...pack.templates]
|
|
558
|
-
}
|
|
559
|
-
|
|
560
|
-
return Object.keys(extractTemplateCollection(target))
|
|
561
|
-
.map(templateId => getBioTemplateInfo(templateId)?.template_id)
|
|
562
|
-
.filter((templateId): templateId is TemplateId => templateId !== undefined)
|
|
563
|
-
}
|
|
564
|
-
|
|
565
|
-
function binding(
|
|
566
|
-
templateId: TemplateId,
|
|
567
|
-
component: string,
|
|
568
|
-
adapters: readonly string[],
|
|
569
|
-
props: readonly string[],
|
|
570
|
-
description: string
|
|
571
|
-
): BioTemplateComponentBinding {
|
|
572
|
-
return {
|
|
573
|
-
id: `${templateId}:${component}`,
|
|
574
|
-
template_id: templateId,
|
|
575
|
-
component,
|
|
576
|
-
adapters,
|
|
577
|
-
props,
|
|
578
|
-
description,
|
|
579
|
-
importPath: '@morscherlab/mint-sdk',
|
|
580
|
-
}
|
|
581
|
-
}
|
|
582
|
-
|
|
583
|
-
function activePlateFromState(state: ReturnType<typeof toPlateMapEditorState>) {
|
|
584
|
-
return state.plates.find(plate => plate.id === state.activePlateId) ?? state.plates[0]
|
|
585
|
-
}
|
|
586
|
-
|
|
587
|
-
function sampleColorsFromPlateState(state: ReturnType<typeof toPlateMapEditorState>): Record<string, string> {
|
|
588
|
-
return Object.fromEntries(
|
|
589
|
-
state.samples
|
|
590
|
-
.filter(sample => sample.color)
|
|
591
|
-
.map(sample => [sample.id, sample.color as string])
|
|
592
|
-
)
|
|
593
|
-
}
|
|
594
|
-
|
|
595
|
-
function legendItemsFromPlateState(state: ReturnType<typeof toPlateMapEditorState>): WellLegendItem[] {
|
|
596
|
-
return state.samples.map((sample, index) => ({
|
|
597
|
-
type: sample.id,
|
|
598
|
-
label: sample.name,
|
|
599
|
-
color: sample.color ?? colorForIndex(index),
|
|
600
|
-
}))
|
|
601
|
-
}
|
|
602
|
-
|
|
603
|
-
function colorForIndex(index: number): string {
|
|
604
|
-
const colors = ['#3B82F6', '#10B981', '#EF4444', '#F59E0B', '#8B5CF6', '#F97316', '#06B6D4', '#14B8A6']
|
|
605
|
-
return colors[index % colors.length]
|
|
606
|
-
}
|
|
607
|
-
|
|
608
|
-
function cloneBindingMap<TName extends string>(
|
|
609
|
-
bindings: Record<TName, readonly BioTemplateComponentBinding[]>
|
|
610
|
-
): Record<TName, BioTemplateComponentBinding[]> {
|
|
611
|
-
const result = {} as Record<TName, BioTemplateComponentBinding[]>
|
|
612
|
-
for (const name of Object.keys(bindings) as TName[]) {
|
|
613
|
-
result[name] = cloneBindings(bindings[name])
|
|
614
|
-
}
|
|
615
|
-
return result
|
|
616
|
-
}
|
|
617
|
-
|
|
618
|
-
function cloneBindings(bindings: readonly BioTemplateComponentBinding[]): BioTemplateComponentBinding[] {
|
|
619
|
-
return bindings.map(cloneBinding)
|
|
620
|
-
}
|
|
621
|
-
|
|
622
|
-
function cloneBinding(binding: BioTemplateComponentBinding): BioTemplateComponentBinding {
|
|
623
|
-
return {
|
|
624
|
-
...binding,
|
|
625
|
-
adapters: [...binding.adapters],
|
|
626
|
-
props: [...binding.props],
|
|
627
|
-
}
|
|
628
|
-
}
|
|
629
|
-
|
|
630
|
-
function uniquePropsName(
|
|
631
|
-
binding: BioTemplateComponentBinding,
|
|
632
|
-
usedNames: Map<string, number>
|
|
633
|
-
): string {
|
|
634
|
-
const base = toCamelIdentifier(`${binding.template_id} ${binding.component} props`)
|
|
635
|
-
const count = usedNames.get(base) ?? 0
|
|
636
|
-
usedNames.set(base, count + 1)
|
|
637
|
-
return count === 0 ? base : `${base}${count + 1}`
|
|
638
|
-
}
|
|
639
|
-
|
|
640
|
-
function toCamelIdentifier(value: string): string {
|
|
641
|
-
const words = value
|
|
642
|
-
.replace(/([a-z0-9])([A-Z])/g, '$1 $2')
|
|
643
|
-
.split(/[^A-Za-z0-9]+/)
|
|
644
|
-
.filter(Boolean)
|
|
645
|
-
|
|
646
|
-
if (words.length === 0) return 'componentProps'
|
|
647
|
-
|
|
648
|
-
return words
|
|
649
|
-
.map((word, index) => {
|
|
650
|
-
const lower = word.toLowerCase()
|
|
651
|
-
return index === 0 ? lower : lower.charAt(0).toUpperCase() + lower.slice(1)
|
|
652
|
-
})
|
|
653
|
-
.join('')
|
|
654
|
-
}
|
|
655
|
-
|
|
656
|
-
function toVueSfc(
|
|
657
|
-
imports: BioTemplateComponentImport[],
|
|
658
|
-
setupLines: string[],
|
|
659
|
-
template: string,
|
|
660
|
-
includeTargetTypeImport: boolean
|
|
661
|
-
): string {
|
|
662
|
-
const importLines = [
|
|
663
|
-
...imports.map(item => item.statement),
|
|
664
|
-
"import { toBioTemplateComponentProps } from '@morscherlab/mint-sdk/templates'",
|
|
665
|
-
...(includeTargetTypeImport
|
|
666
|
-
? ["import type { BioTemplateEnvelope, TemplateCollectionEnvelope } from '@morscherlab/mint-sdk/templates'"]
|
|
667
|
-
: []),
|
|
668
|
-
]
|
|
669
|
-
const templateLines = template
|
|
670
|
-
? template.split('\n').map(line => ` ${line}`).join('\n')
|
|
671
|
-
: ''
|
|
672
|
-
|
|
673
|
-
return [
|
|
674
|
-
'<script setup lang="ts">',
|
|
675
|
-
...importLines,
|
|
676
|
-
'',
|
|
677
|
-
...setupLines,
|
|
678
|
-
'</script>',
|
|
679
|
-
'',
|
|
680
|
-
'<template>',
|
|
681
|
-
templateLines,
|
|
682
|
-
'</template>',
|
|
683
|
-
].join('\n')
|
|
684
|
-
}
|
|
685
|
-
|
|
686
|
-
function isTemplateEnvelope(value: unknown): value is BioTemplateEnvelope<unknown> {
|
|
687
|
-
return isRecord(value) && typeof value.template_id === 'string' && 'data' in value
|
|
688
|
-
}
|
|
689
|
-
|
|
690
|
-
function collectionPresetName(value: unknown): string | undefined {
|
|
691
|
-
if (!isRecord(value) || !isRecord(value.metadata)) return undefined
|
|
692
|
-
return typeof value.metadata.preset === 'string' ? value.metadata.preset : undefined
|
|
693
|
-
}
|
|
694
|
-
|
|
695
|
-
function collectionPackName(value: unknown): string | undefined {
|
|
696
|
-
if (!isRecord(value) || !isRecord(value.metadata)) return undefined
|
|
697
|
-
return typeof value.metadata.pack === 'string' ? value.metadata.pack : undefined
|
|
698
|
-
}
|
|
699
|
-
|
|
700
|
-
function isRecord(value: unknown): value is Record<string, unknown> {
|
|
701
|
-
return typeof value === 'object' && value !== null
|
|
702
|
-
}
|
|
@@ -0,0 +1,42 @@
|
|
|
1
|
+
import {
|
|
2
|
+
toDoseConditions,
|
|
3
|
+
toDoseLayoutState,
|
|
4
|
+
} from './adapters'
|
|
5
|
+
import {
|
|
6
|
+
activePlateFromState,
|
|
7
|
+
sampleColorsFromPlateState,
|
|
8
|
+
} from './componentPlateHelpers'
|
|
9
|
+
import { propsBinding } from './componentPropsFactory'
|
|
10
|
+
import type { BioTemplateComponentPropsBinding } from './componentBindings'
|
|
11
|
+
import type { DoseResponseTemplate } from './types'
|
|
12
|
+
|
|
13
|
+
export function doseResponseProps(template: DoseResponseTemplate): BioTemplateComponentPropsBinding[] {
|
|
14
|
+
const conditions = toDoseConditions(template)
|
|
15
|
+
const layout = toDoseLayoutState(template)
|
|
16
|
+
const targetWells = layout ? Object.keys(activePlateFromState(layout).wells) : []
|
|
17
|
+
const props = [
|
|
18
|
+
propsBinding('dose-response', 'DoseCalculator', {
|
|
19
|
+
mode: 'serial',
|
|
20
|
+
targetWells,
|
|
21
|
+
disabled: conditions.length === 0,
|
|
22
|
+
}),
|
|
23
|
+
]
|
|
24
|
+
|
|
25
|
+
if (layout) {
|
|
26
|
+
const plate = activePlateFromState(layout)
|
|
27
|
+
props.push(propsBinding('dose-response', 'WellPlate', {
|
|
28
|
+
format: plate.format,
|
|
29
|
+
wells: plate.wells,
|
|
30
|
+
sampleColors: sampleColorsFromPlateState(layout),
|
|
31
|
+
legendItems: conditions.map(condition => ({
|
|
32
|
+
type: condition.label,
|
|
33
|
+
label: condition.label,
|
|
34
|
+
color: condition.color,
|
|
35
|
+
})),
|
|
36
|
+
showLegend: true,
|
|
37
|
+
showSampleTypeIndicator: true,
|
|
38
|
+
}))
|
|
39
|
+
}
|
|
40
|
+
|
|
41
|
+
return props
|
|
42
|
+
}
|
|
@@ -0,0 +1,77 @@
|
|
|
1
|
+
import {
|
|
2
|
+
toAssayMatrixSampleOptions,
|
|
3
|
+
toInstrumentRunScheduleEvents,
|
|
4
|
+
toReagentListItems,
|
|
5
|
+
toSampleOptions,
|
|
6
|
+
toTemplateDataFrame,
|
|
7
|
+
} from './adapters'
|
|
8
|
+
import { propsBinding } from './componentPropsFactory'
|
|
9
|
+
import type { BioTemplateComponentPropsBinding } from './componentBindings'
|
|
10
|
+
import type {
|
|
11
|
+
AssayMatrixTemplate,
|
|
12
|
+
DataFrameTemplate,
|
|
13
|
+
InstrumentRunTemplate,
|
|
14
|
+
ProtocolStepsTemplate,
|
|
15
|
+
ReagentListTemplate,
|
|
16
|
+
SampleSheetTemplate,
|
|
17
|
+
TemplateId,
|
|
18
|
+
TimeCourseTemplate,
|
|
19
|
+
} from './types'
|
|
20
|
+
|
|
21
|
+
export function dataFrameProps(template: DataFrameTemplate): BioTemplateComponentPropsBinding {
|
|
22
|
+
const frame = toTemplateDataFrame(template)
|
|
23
|
+
return propsBinding(template.template_id as TemplateId, 'DataFrame', {
|
|
24
|
+
...frame,
|
|
25
|
+
searchable: true,
|
|
26
|
+
sortable: true,
|
|
27
|
+
size: 'sm',
|
|
28
|
+
})
|
|
29
|
+
}
|
|
30
|
+
|
|
31
|
+
export function sampleSelectorProps(template: SampleSheetTemplate): BioTemplateComponentPropsBinding {
|
|
32
|
+
const options = toSampleOptions(template)
|
|
33
|
+
return propsBinding('sample-sheet', 'SampleSelector', {
|
|
34
|
+
samples: options.map(option => option.label),
|
|
35
|
+
modelValue: [],
|
|
36
|
+
})
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
export function assayMatrixSampleSelectorProps(template: AssayMatrixTemplate): BioTemplateComponentPropsBinding {
|
|
40
|
+
const options = toAssayMatrixSampleOptions(template)
|
|
41
|
+
return propsBinding('assay-matrix', 'SampleSelector', {
|
|
42
|
+
samples: options.map(option => option.label),
|
|
43
|
+
modelValue: [],
|
|
44
|
+
})
|
|
45
|
+
}
|
|
46
|
+
|
|
47
|
+
export function timelineProps(
|
|
48
|
+
template: TimeCourseTemplate | ProtocolStepsTemplate | InstrumentRunTemplate,
|
|
49
|
+
steps: unknown[],
|
|
50
|
+
editable = false
|
|
51
|
+
): BioTemplateComponentPropsBinding {
|
|
52
|
+
return propsBinding(template.template_id as TemplateId, 'ExperimentTimeline', {
|
|
53
|
+
modelValue: steps,
|
|
54
|
+
orientation: 'vertical',
|
|
55
|
+
editable,
|
|
56
|
+
})
|
|
57
|
+
}
|
|
58
|
+
|
|
59
|
+
export function scheduleCalendarProps(template: InstrumentRunTemplate): BioTemplateComponentPropsBinding {
|
|
60
|
+
const events = toInstrumentRunScheduleEvents(template)
|
|
61
|
+
return propsBinding('instrument-run', 'ScheduleCalendar', {
|
|
62
|
+
modelValue: events[0]?.start,
|
|
63
|
+
events,
|
|
64
|
+
view: 'day',
|
|
65
|
+
readonly: true,
|
|
66
|
+
showNavigation: false,
|
|
67
|
+
showViewToggle: false,
|
|
68
|
+
})
|
|
69
|
+
}
|
|
70
|
+
|
|
71
|
+
export function reagentListProps(template: ReagentListTemplate): BioTemplateComponentPropsBinding {
|
|
72
|
+
return propsBinding('reagent-list', 'ReagentList', {
|
|
73
|
+
modelValue: toReagentListItems(template),
|
|
74
|
+
searchable: true,
|
|
75
|
+
sortable: true,
|
|
76
|
+
})
|
|
77
|
+
}
|
|
@@ -0,0 +1,29 @@
|
|
|
1
|
+
import type {
|
|
2
|
+
PlateMapEditorState,
|
|
3
|
+
WellLegendItem,
|
|
4
|
+
} from '../types'
|
|
5
|
+
|
|
6
|
+
export function activePlateFromState(state: PlateMapEditorState) {
|
|
7
|
+
return state.plates.find(plate => plate.id === state.activePlateId) ?? state.plates[0]
|
|
8
|
+
}
|
|
9
|
+
|
|
10
|
+
export function sampleColorsFromPlateState(state: PlateMapEditorState): Record<string, string> {
|
|
11
|
+
return Object.fromEntries(
|
|
12
|
+
state.samples
|
|
13
|
+
.filter(sample => sample.color)
|
|
14
|
+
.map(sample => [sample.id, sample.color as string])
|
|
15
|
+
)
|
|
16
|
+
}
|
|
17
|
+
|
|
18
|
+
export function legendItemsFromPlateState(state: PlateMapEditorState): WellLegendItem[] {
|
|
19
|
+
return state.samples.map((sample, index) => ({
|
|
20
|
+
type: sample.id,
|
|
21
|
+
label: sample.name,
|
|
22
|
+
color: sample.color ?? colorForIndex(index),
|
|
23
|
+
}))
|
|
24
|
+
}
|
|
25
|
+
|
|
26
|
+
export function colorForIndex(index: number): string {
|
|
27
|
+
const colors = ['#3B82F6', '#10B981', '#EF4444', '#F59E0B', '#8B5CF6', '#F97316', '#06B6D4', '#14B8A6']
|
|
28
|
+
return colors[index % colors.length]
|
|
29
|
+
}
|
|
@@ -0,0 +1,32 @@
|
|
|
1
|
+
import {
|
|
2
|
+
toPlateMapEditorState,
|
|
3
|
+
toWellPlateWells,
|
|
4
|
+
} from './adapters'
|
|
5
|
+
import {
|
|
6
|
+
activePlateFromState,
|
|
7
|
+
legendItemsFromPlateState,
|
|
8
|
+
sampleColorsFromPlateState,
|
|
9
|
+
} from './componentPlateHelpers'
|
|
10
|
+
import { propsBinding } from './componentPropsFactory'
|
|
11
|
+
import type { BioTemplateComponentPropsBinding } from './componentBindings'
|
|
12
|
+
import type { PlateMapTemplate } from './types'
|
|
13
|
+
|
|
14
|
+
export function plateMapProps(template: PlateMapTemplate): BioTemplateComponentPropsBinding[] {
|
|
15
|
+
const state = toPlateMapEditorState(template)
|
|
16
|
+
const plate = activePlateFromState(state)
|
|
17
|
+
return [
|
|
18
|
+
propsBinding('plate-map', 'PlateMapEditor', {
|
|
19
|
+
modelValue: state,
|
|
20
|
+
format: plate.format,
|
|
21
|
+
samples: state.samples,
|
|
22
|
+
}),
|
|
23
|
+
propsBinding('plate-map', 'WellPlate', {
|
|
24
|
+
format: plate.format,
|
|
25
|
+
wells: toWellPlateWells(template),
|
|
26
|
+
sampleColors: sampleColorsFromPlateState(state),
|
|
27
|
+
legendItems: legendItemsFromPlateState(state),
|
|
28
|
+
showLegend: true,
|
|
29
|
+
showSampleTypeIndicator: true,
|
|
30
|
+
}),
|
|
31
|
+
]
|
|
32
|
+
}
|