@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (443) hide show
  1. package/dist/__tests__/components/AppTopBar.navigation.test.d.ts +1 -0
  2. package/dist/__tests__/components/DoseCalculatorVolumeField.test.d.ts +1 -0
  3. package/dist/__tests__/components/PlateMapEditorToolbarInternal.test.d.ts +1 -0
  4. package/dist/__tests__/components/PluginWorkspaceView.controls.test.d.ts +1 -0
  5. package/dist/__tests__/components/PluginWorkspaceView.navigation.test.d.ts +1 -0
  6. package/dist/__tests__/components/PluginWorkspaceView.shell.test.d.ts +1 -0
  7. package/dist/__tests__/components/ProtocolStep.presentation.test.d.ts +1 -0
  8. package/dist/__tests__/components/ProtocolStepEditor.state.test.d.ts +1 -0
  9. package/dist/__tests__/components/ProtocolStepParameterField.test.d.ts +1 -0
  10. package/dist/__tests__/components/ReagentList.presentation.test.d.ts +1 -0
  11. package/dist/__tests__/components/SampleSelector.colors.test.d.ts +1 -0
  12. package/dist/__tests__/components/SampleSelector.drag.test.d.ts +1 -0
  13. package/dist/__tests__/components/SampleSelector.groups.test.d.ts +1 -0
  14. package/dist/__tests__/components/SampleSelector.selection.test.d.ts +1 -0
  15. package/dist/__tests__/components/SampleSelectorSampleRow.test.d.ts +1 -0
  16. package/dist/__tests__/components/ScheduleCalendar.test.d.ts +1 -0
  17. package/dist/__tests__/components/SettingsModal.schema.test.d.ts +1 -0
  18. package/dist/__tests__/components/WellPlate.colors.test.d.ts +1 -0
  19. package/dist/__tests__/components/WellPlate.conditions.test.d.ts +1 -0
  20. package/dist/__tests__/components/WellPlate.geometry.test.d.ts +1 -0
  21. package/dist/__tests__/components/WellPlate.interaction.test.d.ts +1 -0
  22. package/dist/__tests__/components/WellPlate.legend.test.d.ts +1 -0
  23. package/dist/__tests__/components/WellPlate.rendering.test.d.ts +1 -0
  24. package/dist/__tests__/components/WellPlate.sampleDrop.test.d.ts +1 -0
  25. package/dist/__tests__/composables/autoGroup/classify.test.d.ts +1 -0
  26. package/dist/__tests__/composables/autoGroup/columns.test.d.ts +1 -0
  27. package/dist/__tests__/composables/autoGroup/compose.test.d.ts +1 -0
  28. package/dist/__tests__/composables/autoGroup/cooccurrence.test.d.ts +1 -0
  29. package/dist/__tests__/composables/autoGroup/fingerprint.test.d.ts +1 -0
  30. package/dist/__tests__/composables/autoGroup/integration.test.d.ts +1 -0
  31. package/dist/__tests__/composables/autoGroup/template.test.d.ts +1 -0
  32. package/dist/__tests__/composables/autoGroup/tokenize.test.d.ts +1 -0
  33. package/dist/__tests__/composables/useAutoGroupInputSources.test.d.ts +1 -0
  34. package/dist/__tests__/composables/useScheduleCalendarLayout.test.d.ts +1 -0
  35. package/dist/__tests__/docs/extractDocsComponents.test.d.ts +1 -0
  36. package/dist/__tests__/docs/extractDocsExports.test.d.ts +1 -0
  37. package/dist/__tests__/docs/extractDocsParsing.test.d.ts +1 -0
  38. package/dist/__tests__/docs/extractDocsTemplates.test.d.ts +1 -0
  39. package/dist/__tests__/docs/extractDocsTheme.test.d.ts +1 -0
  40. package/dist/components/AppTopBar.navigation.d.ts +11 -0
  41. package/dist/components/BaseButton.vue.d.ts +1 -1
  42. package/dist/components/BaseCheckbox.vue.d.ts +1 -1
  43. package/dist/components/BaseInput.vue.d.ts +2 -2
  44. package/dist/components/BasePill.vue.d.ts +1 -1
  45. package/dist/components/BaseRadioGroup.vue.d.ts +1 -1
  46. package/dist/components/BaseSelect.vue.d.ts +1 -1
  47. package/dist/components/BaseSlider.vue.d.ts +2 -2
  48. package/dist/components/BaseTextarea.vue.d.ts +2 -2
  49. package/dist/components/BaseToggle.vue.d.ts +1 -1
  50. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +2 -2
  51. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +1 -1
  52. package/dist/components/ColorSlider.vue.d.ts +2 -2
  53. package/dist/components/ConcentrationInput.vue.d.ts +2 -2
  54. package/dist/components/DatePicker.vue.d.ts +1 -1
  55. package/dist/components/DateTimePicker.vue.d.ts +2 -2
  56. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +15 -0
  57. package/dist/components/DropdownButton.vue.d.ts +1 -1
  58. package/dist/components/FileUploader.vue.d.ts +2 -2
  59. package/dist/components/FormulaInput.vue.d.ts +2 -2
  60. package/dist/components/IconButton.vue.d.ts +1 -1
  61. package/dist/components/LoadingSpinner.vue.d.ts +1 -1
  62. package/dist/components/MoleculeInput.vue.d.ts +2 -2
  63. package/dist/components/MultiSelect.vue.d.ts +1 -1
  64. package/dist/components/NumberInput.vue.d.ts +1 -1
  65. package/dist/components/PlateMapEditor.vue.d.ts +6 -6
  66. package/dist/components/PluginWorkspaceView.controls.d.ts +28 -0
  67. package/dist/components/PluginWorkspaceView.navigation.d.ts +29 -0
  68. package/dist/components/PluginWorkspaceView.props.d.ts +151 -0
  69. package/dist/components/PluginWorkspaceView.shell.d.ts +19 -0
  70. package/dist/components/PluginWorkspaceView.vue.d.ts +46 -195
  71. package/dist/components/ProgressBar.vue.d.ts +1 -1
  72. package/dist/components/ProtocolStep.presentation.d.ts +4 -0
  73. package/dist/components/ProtocolStepEditor.state.d.ts +18 -0
  74. package/dist/components/ProtocolStepParameterField.vue.d.ts +12 -0
  75. package/dist/components/ReagentList.presentation.d.ts +16 -0
  76. package/dist/components/ResourceCard.vue.d.ts +1 -1
  77. package/dist/components/SampleSelector.colors.d.ts +13 -0
  78. package/dist/components/SampleSelector.drag.d.ts +24 -0
  79. package/dist/components/SampleSelector.groups.d.ts +15 -0
  80. package/dist/components/SampleSelector.selection.d.ts +26 -0
  81. package/dist/components/SampleSelector.vue.d.ts +4 -1
  82. package/dist/components/SampleSelectorSampleRow.vue.d.ts +21 -0
  83. package/dist/components/SegmentedControl.vue.d.ts +1 -1
  84. package/dist/components/SequenceInput.vue.d.ts +2 -2
  85. package/dist/components/SequenceProgressBar.vue.d.ts +1 -1
  86. package/dist/components/SettingsModal.schema.d.ts +9 -0
  87. package/dist/components/StatusIndicator.vue.d.ts +1 -1
  88. package/dist/components/TagsInput.vue.d.ts +2 -2
  89. package/dist/components/TimePicker.vue.d.ts +2 -2
  90. package/dist/components/TimeRangeInput.vue.d.ts +1 -1
  91. package/dist/components/UnitInput.vue.d.ts +2 -2
  92. package/dist/components/WellPlate.colors.d.ts +9 -0
  93. package/dist/components/WellPlate.conditions.d.ts +26 -0
  94. package/dist/components/WellPlate.geometry.d.ts +23 -0
  95. package/dist/components/WellPlate.interaction.d.ts +71 -0
  96. package/dist/components/WellPlate.legend.d.ts +2 -0
  97. package/dist/components/WellPlate.rendering.d.ts +24 -0
  98. package/dist/components/WellPlate.sampleDrop.d.ts +8 -0
  99. package/dist/components/WellPlate.vue.d.ts +1 -1
  100. package/dist/components/index.js +2 -2
  101. package/dist/components/internal/ActionItemInternal.vue.d.ts +1 -1
  102. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +28 -0
  103. package/dist/{components-BhK-dW99.js → components-DtHA2bgp.js} +3754 -2991
  104. package/dist/components-DtHA2bgp.js.map +1 -0
  105. package/dist/composables/autoGroup/classKey.d.ts +4 -0
  106. package/dist/composables/autoGroup/classify.d.ts +28 -0
  107. package/dist/composables/autoGroup/colors.d.ts +2 -0
  108. package/dist/composables/autoGroup/columns.d.ts +10 -0
  109. package/dist/composables/autoGroup/compose.d.ts +8 -0
  110. package/dist/composables/autoGroup/cooccurrence.d.ts +2 -0
  111. package/dist/composables/autoGroup/csv-shim.d.ts +2 -0
  112. package/dist/composables/autoGroup/fingerprint.d.ts +3 -0
  113. package/dist/composables/autoGroup/index.d.ts +16 -0
  114. package/dist/composables/autoGroup/replicatePreGroup.d.ts +38 -0
  115. package/dist/composables/autoGroup/template.d.ts +15 -0
  116. package/dist/composables/autoGroup/tokenize.d.ts +8 -0
  117. package/dist/composables/autoGroupConstants.d.ts +1 -0
  118. package/dist/composables/autoGroupGrouping.d.ts +3 -0
  119. package/dist/composables/controlComponentBindings.d.ts +7 -0
  120. package/dist/composables/controlSchemaAdapters.d.ts +20 -0
  121. package/dist/composables/controlSchemaDoseDesign.d.ts +11 -0
  122. package/dist/composables/controlSchemaFormFields.d.ts +3 -0
  123. package/dist/composables/controlSchemaLayout.d.ts +7 -0
  124. package/dist/composables/controlSchemaModel.d.ts +5 -0
  125. package/dist/composables/controlSchemaNormalize.d.ts +15 -0
  126. package/dist/composables/controlSchemaTypes.d.ts +305 -0
  127. package/dist/composables/controlSchemaUtils.d.ts +9 -0
  128. package/dist/composables/controlWorkspaceOptions.d.ts +2 -0
  129. package/dist/composables/formBuilderSchema.d.ts +18 -0
  130. package/dist/composables/index.js +3 -3
  131. package/dist/composables/pluginEndpointBuilder.d.ts +13 -0
  132. package/dist/composables/protocolTemplateCatalog.d.ts +26 -0
  133. package/dist/composables/useAutoGroup.d.ts +61 -74
  134. package/dist/composables/useAutoGroupInputSources.d.ts +32 -0
  135. package/dist/composables/useBioTemplateControls.d.ts +1 -1
  136. package/dist/composables/useBioTemplatePresetWorkspace.d.ts +1 -1
  137. package/dist/composables/useBioTemplateWorkspace.d.ts +1 -1
  138. package/dist/composables/useControlSchema.d.ts +8 -346
  139. package/dist/composables/useControlWorkspace.d.ts +5 -0
  140. package/dist/composables/useForm.d.ts +2 -33
  141. package/dist/composables/useFormBuilder.d.ts +2 -9
  142. package/dist/composables/useFormValidation.d.ts +34 -0
  143. package/dist/composables/usePluginClient.d.ts +1 -4
  144. package/dist/composables/useProtocolTemplates.d.ts +2 -24
  145. package/dist/composables/useScheduleCalendarLayout.d.ts +49 -0
  146. package/dist/{composables-Bg7CFuNz.js → composables-Dlg8jenH.js} +33 -31
  147. package/dist/composables-Dlg8jenH.js.map +1 -0
  148. package/dist/index.js +4 -4
  149. package/dist/install.js +2 -2
  150. package/dist/styles.css +547 -516
  151. package/dist/templates/adapters.d.ts +14 -47
  152. package/dist/templates/assayLookups.d.ts +3 -0
  153. package/dist/templates/assayMatrixAdapters.d.ts +6 -0
  154. package/dist/templates/assayMatrixBuilder.d.ts +2 -0
  155. package/dist/templates/assayNormalizers.d.ts +4 -0
  156. package/dist/templates/builderDefaults.d.ts +1 -0
  157. package/dist/templates/builderIdUtils.d.ts +4 -0
  158. package/dist/templates/builderPresetControls.d.ts +10 -0
  159. package/dist/templates/builderReadUtils.d.ts +8 -0
  160. package/dist/templates/builders.d.ts +26 -67
  161. package/dist/templates/calibrationCurveAdapters.d.ts +4 -0
  162. package/dist/templates/calibrationCurveBuilder.d.ts +2 -0
  163. package/dist/templates/calibrationNormalizers.d.ts +5 -0
  164. package/dist/templates/componentBindingCatalog.d.ts +25 -0
  165. package/dist/templates/componentBindingHelpers.d.ts +17 -0
  166. package/dist/templates/componentDoseResponseProps.d.ts +3 -0
  167. package/dist/templates/componentGenericProps.d.ts +8 -0
  168. package/dist/templates/componentPlateHelpers.d.ts +5 -0
  169. package/dist/templates/componentPlateMapProps.d.ts +3 -0
  170. package/dist/templates/componentPropsFactory.d.ts +3 -0
  171. package/dist/templates/componentQpcrPlateProps.d.ts +3 -0
  172. package/dist/templates/componentTargetResolvers.d.ts +5 -0
  173. package/dist/templates/componentTemplateProps.d.ts +3 -0
  174. package/dist/templates/controlSchemaClone.d.ts +4 -0
  175. package/dist/templates/controlSchemaConstants.d.ts +10 -0
  176. package/dist/templates/controlSchemaMerge.d.ts +3 -0
  177. package/dist/templates/controlSchemaTargets.d.ts +17 -0
  178. package/dist/templates/controlSchemaTypes.d.ts +4 -0
  179. package/dist/templates/controlSchemas.d.ts +4 -4
  180. package/dist/templates/defaultBioTemplateBuilder.d.ts +2 -0
  181. package/dist/templates/doseResponseAdapters.d.ts +4 -0
  182. package/dist/templates/doseResponseBuilder.d.ts +2 -0
  183. package/dist/templates/elisaAssayCollectionBuilder.d.ts +2 -0
  184. package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +2 -0
  185. package/dist/templates/flowCytometryPanelBuilder.d.ts +2 -0
  186. package/dist/templates/flowNormalizers.d.ts +8 -0
  187. package/dist/templates/flowPanelAdapters.d.ts +4 -0
  188. package/dist/templates/index.js +1 -1
  189. package/dist/templates/instrumentRunAdapterHelpers.d.ts +8 -0
  190. package/dist/templates/instrumentRunAdapters.d.ts +8 -0
  191. package/dist/templates/instrumentRunBuilder.d.ts +2 -0
  192. package/dist/templates/lcmsBatchCollectionBuilder.d.ts +2 -0
  193. package/dist/templates/plateGeometry.d.ts +4 -0
  194. package/dist/templates/plateMapAdapters.d.ts +3 -0
  195. package/dist/templates/plateMapBuilder.d.ts +2 -0
  196. package/dist/templates/presetControlSchemas.d.ts +534 -0
  197. package/dist/templates/protocolAdapters.d.ts +5 -0
  198. package/dist/templates/protocolNormalizers.d.ts +6 -0
  199. package/dist/templates/protocolStepsBuilder.d.ts +2 -0
  200. package/dist/templates/qpcrAdapters.d.ts +5 -0
  201. package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +2 -0
  202. package/dist/templates/qpcrPlateBuilder.d.ts +2 -0
  203. package/dist/templates/reagentAdapters.d.ts +5 -0
  204. package/dist/templates/reagentListBuilder.d.ts +2 -0
  205. package/dist/templates/runNormalizers.d.ts +10 -0
  206. package/dist/templates/sampleNormalizers.d.ts +4 -0
  207. package/dist/templates/samplePrepAdapters.d.ts +4 -0
  208. package/dist/templates/samplePrepBuilder.d.ts +2 -0
  209. package/dist/templates/sampleSheetAdapters.d.ts +5 -0
  210. package/dist/templates/sampleSheetBuilder.d.ts +2 -0
  211. package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +2 -0
  212. package/dist/templates/targetedMetabolomicsHelpers.d.ts +5 -0
  213. package/dist/templates/templateAdapterTypes.d.ts +48 -0
  214. package/dist/templates/templateControlSchemas.d.ts +400 -0
  215. package/dist/templates/templateCreateOptions.d.ts +165 -0
  216. package/dist/templates/templateEnvelopes.d.ts +9 -0
  217. package/dist/templates/templatePackCollectionBuilder.d.ts +2 -0
  218. package/dist/templates/templatePresetCollectionBuilder.d.ts +18 -0
  219. package/dist/templates/templateQpcrTypes.d.ts +42 -0
  220. package/dist/templates/templateValidators.d.ts +13 -0
  221. package/dist/templates/timeCourseAdapters.d.ts +5 -0
  222. package/dist/templates/timeCourseBuilder.d.ts +2 -0
  223. package/dist/templates/types.d.ts +5 -250
  224. package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +2 -0
  225. package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +2 -0
  226. package/dist/{templates-BorLR_7p.js → templates-DtdUvJ4c.js} +3565 -3411
  227. package/dist/templates-DtdUvJ4c.js.map +1 -0
  228. package/dist/types/auto-group.d.ts +79 -9
  229. package/dist/types/componentLabTypes.d.ts +161 -0
  230. package/dist/types/componentWorkflowTypes.d.ts +150 -0
  231. package/dist/types/components.d.ts +2 -311
  232. package/dist/{useProtocolTemplates-n6AJqSqv.js → useProtocolTemplates-Bm5vyH4_.js} +1220 -454
  233. package/dist/useProtocolTemplates-Bm5vyH4_.js.map +1 -0
  234. package/package.json +1 -1
  235. package/src/__tests__/components/AppTopBar.navigation.test.ts +70 -0
  236. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +53 -0
  237. package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +54 -0
  238. package/src/__tests__/components/PluginWorkspaceView.controls.test.ts +156 -0
  239. package/src/__tests__/components/PluginWorkspaceView.navigation.test.ts +102 -0
  240. package/src/__tests__/components/PluginWorkspaceView.shell.test.ts +41 -0
  241. package/src/__tests__/components/ProtocolStep.presentation.test.ts +31 -0
  242. package/src/__tests__/components/ProtocolStepEditor.state.test.ts +165 -0
  243. package/src/__tests__/components/ProtocolStepParameterField.test.ts +44 -0
  244. package/src/__tests__/components/ReagentList.presentation.test.ts +68 -0
  245. package/src/__tests__/components/SampleSelector.colors.test.ts +49 -0
  246. package/src/__tests__/components/SampleSelector.drag.test.ts +100 -0
  247. package/src/__tests__/components/SampleSelector.groups.test.ts +81 -0
  248. package/src/__tests__/components/SampleSelector.selection.test.ts +70 -0
  249. package/src/__tests__/components/SampleSelector.test.ts +32 -0
  250. package/src/__tests__/components/SampleSelectorSampleRow.test.ts +37 -0
  251. package/src/__tests__/components/ScheduleCalendar.test.ts +44 -0
  252. package/src/__tests__/components/SettingsModal.schema.test.ts +97 -0
  253. package/src/__tests__/components/WellPlate.colors.test.ts +28 -0
  254. package/src/__tests__/components/WellPlate.conditions.test.ts +68 -0
  255. package/src/__tests__/components/WellPlate.geometry.test.ts +54 -0
  256. package/src/__tests__/components/WellPlate.interaction.test.ts +171 -0
  257. package/src/__tests__/components/WellPlate.legend.test.ts +13 -0
  258. package/src/__tests__/components/WellPlate.rendering.test.ts +122 -0
  259. package/src/__tests__/components/WellPlate.sampleDrop.test.ts +70 -0
  260. package/src/__tests__/composables/autoGroup/classify.test.ts +107 -0
  261. package/src/__tests__/composables/autoGroup/columns.test.ts +135 -0
  262. package/src/__tests__/composables/autoGroup/compose.test.ts +227 -0
  263. package/src/__tests__/composables/autoGroup/cooccurrence.test.ts +91 -0
  264. package/src/__tests__/composables/autoGroup/fingerprint.test.ts +50 -0
  265. package/src/__tests__/composables/autoGroup/integration.test.ts +79 -0
  266. package/src/__tests__/composables/autoGroup/template.test.ts +70 -0
  267. package/src/__tests__/composables/autoGroup/tokenize.test.ts +33 -0
  268. package/src/__tests__/composables/useAutoGroup.test.ts +129 -625
  269. package/src/__tests__/composables/useAutoGroupInputSources.test.ts +107 -0
  270. package/src/__tests__/composables/useControlSchema.test.ts +23 -0
  271. package/src/__tests__/composables/useScheduleCalendarLayout.test.ts +89 -0
  272. package/src/__tests__/docs/extractDocsComponents.test.ts +142 -0
  273. package/src/__tests__/docs/extractDocsExports.test.ts +77 -0
  274. package/src/__tests__/docs/extractDocsParsing.test.ts +69 -0
  275. package/src/__tests__/docs/extractDocsTemplates.test.ts +54 -0
  276. package/src/__tests__/docs/extractDocsTheme.test.ts +89 -0
  277. package/src/__tests__/docs/frontendDocsCatalog.test.ts +1 -1
  278. package/src/__tests__/fixtures/auto-group/mixed-lc-ms-batch.txt +187 -0
  279. package/src/components/AppSidebar.vue +2 -6
  280. package/src/components/AppTopBar.navigation.ts +62 -0
  281. package/src/components/AppTopBar.vue +17 -44
  282. package/src/components/AutoGroupModal.story.vue +50 -0
  283. package/src/components/AutoGroupModal.vue +441 -158
  284. package/src/components/ControlWorkspaceView.vue +2 -6
  285. package/src/components/DoseCalculator.vue +13 -73
  286. package/src/components/DoseCalculatorVolumeField.vue +61 -0
  287. package/src/components/ExperimentTimeline.vue +6 -31
  288. package/src/components/FormBuilder.vue +2 -7
  289. package/src/components/PlateMapEditor.vue +32 -106
  290. package/src/components/PluginWorkspaceView.controls.ts +182 -0
  291. package/src/components/PluginWorkspaceView.navigation.ts +106 -0
  292. package/src/components/PluginWorkspaceView.props.ts +174 -0
  293. package/src/components/PluginWorkspaceView.shell.ts +66 -0
  294. package/src/components/PluginWorkspaceView.vue +85 -404
  295. package/src/components/ProtocolStep.presentation.ts +31 -0
  296. package/src/components/ProtocolStepEditor.state.ts +104 -0
  297. package/src/components/ProtocolStepEditor.vue +48 -179
  298. package/src/components/ProtocolStepParameterField.vue +134 -0
  299. package/src/components/ReagentList.presentation.ts +105 -0
  300. package/src/components/ReagentList.vue +16 -79
  301. package/src/components/SampleSelector.colors.ts +43 -0
  302. package/src/components/SampleSelector.drag.ts +164 -0
  303. package/src/components/SampleSelector.groups.ts +109 -0
  304. package/src/components/SampleSelector.selection.ts +103 -0
  305. package/src/components/SampleSelector.vue +82 -349
  306. package/src/components/SampleSelectorSampleRow.vue +64 -0
  307. package/src/components/ScheduleCalendar.vue +44 -199
  308. package/src/components/SettingsModal.schema.ts +71 -0
  309. package/src/components/SettingsModal.vue +16 -46
  310. package/src/components/WellPlate.colors.ts +56 -0
  311. package/src/components/WellPlate.conditions.ts +100 -0
  312. package/src/components/WellPlate.geometry.ts +91 -0
  313. package/src/components/WellPlate.interaction.ts +272 -0
  314. package/src/components/WellPlate.legend.ts +8 -0
  315. package/src/components/WellPlate.rendering.ts +105 -0
  316. package/src/components/WellPlate.sampleDrop.ts +73 -0
  317. package/src/components/WellPlate.vue +102 -550
  318. package/src/components/internal/PlateMapEditorToolbarInternal.vue +128 -0
  319. package/src/composables/autoGroup/classKey.ts +5 -0
  320. package/src/composables/autoGroup/classify.ts +205 -0
  321. package/src/composables/autoGroup/colors.ts +6 -0
  322. package/src/composables/autoGroup/columns.ts +226 -0
  323. package/src/composables/autoGroup/compose.ts +156 -0
  324. package/src/composables/autoGroup/cooccurrence.ts +46 -0
  325. package/src/composables/autoGroup/csv-shim.ts +44 -0
  326. package/src/composables/autoGroup/fingerprint.ts +49 -0
  327. package/src/composables/autoGroup/index.ts +20 -0
  328. package/src/composables/autoGroup/replicatePreGroup.ts +90 -0
  329. package/src/composables/autoGroup/template.ts +126 -0
  330. package/src/composables/autoGroup/tokenize.ts +41 -0
  331. package/src/composables/autoGroup/vocab.json +67 -0
  332. package/src/composables/autoGroupConstants.ts +4 -0
  333. package/src/composables/autoGroupGrouping.ts +148 -0
  334. package/src/composables/controlComponentBindings.ts +80 -0
  335. package/src/composables/controlSchemaAdapters.ts +196 -0
  336. package/src/composables/controlSchemaDoseDesign.ts +215 -0
  337. package/src/composables/controlSchemaFormFields.ts +61 -0
  338. package/src/composables/controlSchemaLayout.ts +59 -0
  339. package/src/composables/controlSchemaModel.ts +163 -0
  340. package/src/composables/controlSchemaNormalize.ts +101 -0
  341. package/src/composables/controlSchemaTypes.ts +364 -0
  342. package/src/composables/controlSchemaUtils.ts +36 -0
  343. package/src/composables/controlWorkspaceOptions.ts +21 -0
  344. package/src/composables/formBuilderSchema.ts +153 -0
  345. package/src/composables/pluginEndpointBuilder.ts +203 -0
  346. package/src/composables/protocolTemplateCatalog.ts +325 -0
  347. package/src/composables/useAutoGroup.ts +395 -549
  348. package/src/composables/useAutoGroupInputSources.ts +147 -0
  349. package/src/composables/useBioTemplateControls.ts +1 -1
  350. package/src/composables/useBioTemplatePresetWorkspace.ts +1 -1
  351. package/src/composables/useBioTemplateWorkspace.ts +1 -1
  352. package/src/composables/useControlSchema.ts +64 -1312
  353. package/src/composables/useControlWorkspace.ts +201 -0
  354. package/src/composables/useForm.ts +5 -187
  355. package/src/composables/useFormBuilder.ts +11 -153
  356. package/src/composables/useFormValidation.ts +154 -0
  357. package/src/composables/usePluginClient.ts +10 -193
  358. package/src/composables/useProtocolTemplates.ts +10 -328
  359. package/src/composables/useScheduleCalendarLayout.ts +287 -0
  360. package/src/styles/components/auto-group-modal.css +248 -310
  361. package/src/templates/adapters.ts +89 -930
  362. package/src/templates/assayLookups.ts +33 -0
  363. package/src/templates/assayMatrixAdapters.ts +78 -0
  364. package/src/templates/assayMatrixBuilder.ts +59 -0
  365. package/src/templates/assayNormalizers.ts +34 -0
  366. package/src/templates/builderDefaults.ts +11 -0
  367. package/src/templates/builderIdUtils.ts +20 -0
  368. package/src/templates/builderPresetControls.ts +165 -0
  369. package/src/templates/builderReadUtils.ts +57 -0
  370. package/src/templates/builders.ts +122 -2350
  371. package/src/templates/calibrationCurveAdapters.ts +59 -0
  372. package/src/templates/calibrationCurveBuilder.ts +99 -0
  373. package/src/templates/calibrationNormalizers.ts +60 -0
  374. package/src/templates/componentBindingCatalog.ts +90 -0
  375. package/src/templates/componentBindingHelpers.ts +93 -0
  376. package/src/templates/componentBindings.ts +12 -461
  377. package/src/templates/componentDoseResponseProps.ts +42 -0
  378. package/src/templates/componentGenericProps.ts +77 -0
  379. package/src/templates/componentPlateHelpers.ts +29 -0
  380. package/src/templates/componentPlateMapProps.ts +32 -0
  381. package/src/templates/componentPropsFactory.ts +21 -0
  382. package/src/templates/componentQpcrPlateProps.ts +28 -0
  383. package/src/templates/componentTargetResolvers.ts +69 -0
  384. package/src/templates/componentTemplateProps.ts +78 -0
  385. package/src/templates/controlSchemaClone.ts +32 -0
  386. package/src/templates/controlSchemaConstants.ts +11 -0
  387. package/src/templates/controlSchemaMerge.ts +40 -0
  388. package/src/templates/controlSchemaTargets.ts +87 -0
  389. package/src/templates/controlSchemaTypes.ts +20 -0
  390. package/src/templates/controlSchemas.ts +22 -704
  391. package/src/templates/defaultBioTemplateBuilder.ts +124 -0
  392. package/src/templates/doseResponseAdapters.ts +45 -0
  393. package/src/templates/doseResponseBuilder.ts +44 -0
  394. package/src/templates/elisaAssayCollectionBuilder.ts +62 -0
  395. package/src/templates/flowCytometryAssayCollectionBuilder.ts +41 -0
  396. package/src/templates/flowCytometryPanelBuilder.ts +53 -0
  397. package/src/templates/flowNormalizers.ts +58 -0
  398. package/src/templates/flowPanelAdapters.ts +58 -0
  399. package/src/templates/instrumentRunAdapterHelpers.ts +94 -0
  400. package/src/templates/instrumentRunAdapters.ts +163 -0
  401. package/src/templates/instrumentRunBuilder.ts +97 -0
  402. package/src/templates/lcmsBatchCollectionBuilder.ts +38 -0
  403. package/src/templates/plateGeometry.ts +62 -0
  404. package/src/templates/plateMapAdapters.ts +36 -0
  405. package/src/templates/plateMapBuilder.ts +43 -0
  406. package/src/templates/presetControlSchemas.ts +258 -0
  407. package/src/templates/protocolAdapters.ts +69 -0
  408. package/src/templates/protocolNormalizers.ts +37 -0
  409. package/src/templates/protocolStepsBuilder.ts +36 -0
  410. package/src/templates/qpcrAdapters.ts +104 -0
  411. package/src/templates/qpcrExpressionCollectionBuilder.ts +33 -0
  412. package/src/templates/qpcrPlateBuilder.ts +96 -0
  413. package/src/templates/reagentAdapters.ts +77 -0
  414. package/src/templates/reagentListBuilder.ts +30 -0
  415. package/src/templates/runNormalizers.ts +63 -0
  416. package/src/templates/sampleNormalizers.ts +58 -0
  417. package/src/templates/samplePrepAdapters.ts +63 -0
  418. package/src/templates/samplePrepBuilder.ts +51 -0
  419. package/src/templates/sampleSheetAdapters.ts +75 -0
  420. package/src/templates/sampleSheetBuilder.ts +23 -0
  421. package/src/templates/targetedMetabolomicsCollectionBuilder.ts +79 -0
  422. package/src/templates/targetedMetabolomicsHelpers.ts +102 -0
  423. package/src/templates/templateAdapterTypes.ts +58 -0
  424. package/src/templates/templateControlSchemas.ts +320 -0
  425. package/src/templates/templateCreateOptions.ts +208 -0
  426. package/src/templates/templateEnvelopes.ts +137 -0
  427. package/src/templates/templatePackCollectionBuilder.ts +23 -0
  428. package/src/templates/templatePresetCollectionBuilder.ts +139 -0
  429. package/src/templates/templateQpcrTypes.ts +48 -0
  430. package/src/templates/templateValidators.ts +414 -0
  431. package/src/templates/timeCourseAdapters.ts +73 -0
  432. package/src/templates/timeCourseBuilder.ts +64 -0
  433. package/src/templates/types.ts +79 -275
  434. package/src/templates/wellPlateScreenCollectionBuilder.ts +36 -0
  435. package/src/templates/westernBlotAssayCollectionBuilder.ts +68 -0
  436. package/src/types/auto-group.ts +107 -9
  437. package/src/types/componentLabTypes.ts +235 -0
  438. package/src/types/componentWorkflowTypes.ts +190 -0
  439. package/src/types/components.ts +74 -424
  440. package/dist/components-BhK-dW99.js.map +0 -1
  441. package/dist/composables-Bg7CFuNz.js.map +0 -1
  442. package/dist/templates-BorLR_7p.js.map +0 -1
  443. package/dist/useProtocolTemplates-n6AJqSqv.js.map +0 -1
@@ -0,0 +1,164 @@
1
+ import { ref } from 'vue'
2
+ import type { SampleGroup } from '../types'
3
+ import {
4
+ detectSampleGroupSeparator,
5
+ getSampleGroupMajorPrefix,
6
+ moveSampleToGroup,
7
+ reorderSampleGroup,
8
+ reorderSampleMajorGroup,
9
+ type GroupDragKind,
10
+ type GroupReorderPosition,
11
+ } from './SampleSelector.groups'
12
+
13
+ interface MutableSampleGroups {
14
+ value: SampleGroup[]
15
+ }
16
+
17
+ export function useSampleSelectorDrag(groups: MutableSampleGroups) {
18
+ const draggingSample = ref<string | null>(null)
19
+ const dragSourceGroup = ref<string | null>(null)
20
+ const dragOverGroup = ref<string | null>(null)
21
+
22
+ const draggingGroup = ref<string | null>(null)
23
+ const draggingGroupKind = ref<GroupDragKind | null>(null)
24
+ const reorderTarget = ref<string | null>(null)
25
+ const reorderPosition = ref<GroupReorderPosition | null>(null)
26
+
27
+ function handleDragStart(sample: string, sourceGroup: string | null, event: DragEvent) {
28
+ draggingSample.value = sample
29
+ dragSourceGroup.value = sourceGroup
30
+ if (event.dataTransfer) {
31
+ event.dataTransfer.effectAllowed = 'move'
32
+ event.dataTransfer.setData('text/plain', sample)
33
+ }
34
+ }
35
+
36
+ function resetDragState() {
37
+ draggingSample.value = null
38
+ dragSourceGroup.value = null
39
+ dragOverGroup.value = null
40
+ }
41
+
42
+ function handleDragEnd() {
43
+ resetDragState()
44
+ }
45
+
46
+ function handleDragOver(groupName: string, event: DragEvent) {
47
+ // Only accept this drop target when a sample is being dragged; group drags are handled separately.
48
+ if (!draggingSample.value) return
49
+ event.preventDefault()
50
+ if (event.dataTransfer) {
51
+ event.dataTransfer.dropEffect = 'move'
52
+ }
53
+ dragOverGroup.value = groupName
54
+ }
55
+
56
+ function handleDragLeave() {
57
+ dragOverGroup.value = null
58
+ }
59
+
60
+ function handleDrop(targetGroupName: string, event: DragEvent) {
61
+ if (!draggingSample.value) return
62
+ event.preventDefault()
63
+
64
+ const sample = draggingSample.value
65
+ const sourceGroup = dragSourceGroup.value
66
+
67
+ if (sourceGroup === targetGroupName) {
68
+ resetDragState()
69
+ return
70
+ }
71
+
72
+ groups.value = moveSampleToGroup(groups.value, sample, sourceGroup, targetGroupName)
73
+ resetDragState()
74
+ }
75
+
76
+ function handleGroupDragStart(name: string, kind: GroupDragKind, event: DragEvent) {
77
+ draggingGroup.value = name
78
+ draggingGroupKind.value = kind
79
+ if (event.dataTransfer) {
80
+ event.dataTransfer.effectAllowed = 'move'
81
+ event.dataTransfer.setData('text/plain', `mint-group:${name}`)
82
+ }
83
+ }
84
+
85
+ function handleGroupDragEnd() {
86
+ draggingGroup.value = null
87
+ draggingGroupKind.value = null
88
+ reorderTarget.value = null
89
+ reorderPosition.value = null
90
+ }
91
+
92
+ function handleGroupDragOver(name: string, kind: GroupDragKind, event: DragEvent) {
93
+ if (!draggingGroup.value || draggingGroupKind.value !== kind) return
94
+ if (draggingGroup.value === name) return
95
+
96
+ // Sub-group reorder is restricted to siblings under the same major prefix;
97
+ // crossing majors would silently rename the group, which is too magical.
98
+ if (kind === 'sub') {
99
+ const separator = detectSampleGroupSeparator(groups.value)
100
+ if (
101
+ getSampleGroupMajorPrefix(draggingGroup.value, separator) !==
102
+ getSampleGroupMajorPrefix(name, separator)
103
+ ) return
104
+ }
105
+
106
+ event.preventDefault()
107
+ if (event.dataTransfer) event.dataTransfer.dropEffect = 'move'
108
+
109
+ const rect = (event.currentTarget as HTMLElement).getBoundingClientRect()
110
+ reorderTarget.value = name
111
+ reorderPosition.value = event.clientY < rect.top + rect.height / 2 ? 'before' : 'after'
112
+ }
113
+
114
+ function handleGroupDragLeave(event: DragEvent) {
115
+ const cur = event.currentTarget as HTMLElement
116
+ const rel = event.relatedTarget as Node | null
117
+ if (rel && cur.contains(rel)) return
118
+ reorderTarget.value = null
119
+ reorderPosition.value = null
120
+ }
121
+
122
+ function handleGroupDrop(name: string, kind: GroupDragKind, event: DragEvent) {
123
+ if (!draggingGroup.value || draggingGroupKind.value !== kind) {
124
+ handleGroupDragEnd()
125
+ return
126
+ }
127
+ const position = reorderPosition.value
128
+ if (!position || draggingGroup.value === name) {
129
+ handleGroupDragEnd()
130
+ return
131
+ }
132
+
133
+ event.preventDefault()
134
+
135
+ if (kind === 'major') {
136
+ const nextGroups = reorderSampleMajorGroup(groups.value, draggingGroup.value, name, position)
137
+ if (nextGroups !== groups.value) groups.value = nextGroups
138
+ } else {
139
+ const nextGroups = reorderSampleGroup(groups.value, draggingGroup.value, name, position)
140
+ if (nextGroups !== groups.value) groups.value = nextGroups
141
+ }
142
+
143
+ handleGroupDragEnd()
144
+ }
145
+
146
+ return {
147
+ draggingSample,
148
+ dragOverGroup,
149
+ draggingGroup,
150
+ draggingGroupKind,
151
+ reorderTarget,
152
+ reorderPosition,
153
+ handleDragStart,
154
+ handleDragEnd,
155
+ handleDragOver,
156
+ handleDragLeave,
157
+ handleDrop,
158
+ handleGroupDragStart,
159
+ handleGroupDragEnd,
160
+ handleGroupDragOver,
161
+ handleGroupDragLeave,
162
+ handleGroupDrop,
163
+ }
164
+ }
@@ -0,0 +1,109 @@
1
+ import type { SampleGroup } from '../types'
2
+
3
+ export type GroupDragKind = 'major' | 'sub' | 'flat'
4
+ export type GroupReorderPosition = 'before' | 'after'
5
+
6
+ export function detectSampleGroupSeparator(groups: SampleGroup[]): string {
7
+ return groups.some(group => group.name.includes('/')) ? '/' : '_'
8
+ }
9
+
10
+ export function getSampleGroupMajorPrefix(groupName: string, separator: string): string {
11
+ const parts = groupName.split(separator)
12
+ return parts.length > 1 ? parts[0] : groupName
13
+ }
14
+
15
+ export function moveSampleToGroup(
16
+ groups: SampleGroup[],
17
+ sample: string,
18
+ sourceGroup: string | null,
19
+ targetGroup: string,
20
+ ): SampleGroup[] {
21
+ if (sourceGroup === targetGroup) return groups
22
+
23
+ return groups.map(group => {
24
+ if (sourceGroup && group.name === sourceGroup) {
25
+ return { ...group, samples: group.samples.filter(item => item !== sample) }
26
+ }
27
+ if (group.name === targetGroup && !group.samples.includes(sample)) {
28
+ return { ...group, samples: [...group.samples, sample] }
29
+ }
30
+ return group
31
+ })
32
+ }
33
+
34
+ export function removeSampleGroup(groups: SampleGroup[], groupName: string): SampleGroup[] {
35
+ return groups.filter(group => group.name !== groupName)
36
+ }
37
+
38
+ export function removeSampleMajorGroup(
39
+ groups: SampleGroup[],
40
+ majorGroup: { subGroups: Array<{ name: string }> },
41
+ ): SampleGroup[] {
42
+ const groupNames = new Set(majorGroup.subGroups.map(group => group.name))
43
+ return groups.filter(group => !groupNames.has(group.name))
44
+ }
45
+
46
+ export function removeSampleFromGroup(
47
+ groups: SampleGroup[],
48
+ sample: string,
49
+ groupName: string,
50
+ ): SampleGroup[] {
51
+ return groups.map(group =>
52
+ group.name === groupName
53
+ ? { ...group, samples: group.samples.filter(item => item !== sample) }
54
+ : group,
55
+ )
56
+ }
57
+
58
+ export function reorderSampleGroup(
59
+ groups: SampleGroup[],
60
+ source: string,
61
+ target: string,
62
+ position: GroupReorderPosition,
63
+ ): SampleGroup[] {
64
+ if (source === target) return groups
65
+
66
+ const nextGroups = [...groups]
67
+ const sourceIndex = nextGroups.findIndex(group => group.name === source)
68
+ if (sourceIndex === -1) return groups
69
+
70
+ const [item] = nextGroups.splice(sourceIndex, 1)
71
+ const targetIndex = nextGroups.findIndex(group => group.name === target)
72
+ if (targetIndex === -1) return groups
73
+
74
+ nextGroups.splice(position === 'before' ? targetIndex : targetIndex + 1, 0, item)
75
+ return nextGroups
76
+ }
77
+
78
+ export function reorderSampleMajorGroup(
79
+ groups: SampleGroup[],
80
+ source: string,
81
+ target: string,
82
+ position: GroupReorderPosition,
83
+ ): SampleGroup[] {
84
+ if (source === target) return groups
85
+
86
+ const separator = detectSampleGroupSeparator(groups)
87
+ const isSource = (group: SampleGroup) => getSampleGroupMajorPrefix(group.name, separator) === source
88
+ const isTarget = (group: SampleGroup) => getSampleGroupMajorPrefix(group.name, separator) === target
89
+
90
+ const sourceGroups = groups.filter(isSource)
91
+ if (sourceGroups.length === 0) return groups
92
+
93
+ const remainingGroups = groups.filter(group => !isSource(group))
94
+ let firstTargetIndex = -1
95
+ let lastTargetIndex = -1
96
+
97
+ remainingGroups.forEach((group, index) => {
98
+ if (isTarget(group)) {
99
+ if (firstTargetIndex === -1) firstTargetIndex = index
100
+ lastTargetIndex = index
101
+ }
102
+ })
103
+
104
+ if (firstTargetIndex === -1) return groups
105
+
106
+ const insertIndex = position === 'before' ? firstTargetIndex : lastTargetIndex + 1
107
+ remainingGroups.splice(insertIndex, 0, ...sourceGroups)
108
+ return remainingGroups
109
+ }
@@ -0,0 +1,103 @@
1
+ import type { ComputedRef } from 'vue'
2
+ import { useListSelection } from '../composables/useListSelection'
3
+ import type { SampleMajorGroup } from '../composables/useSampleGroups'
4
+
5
+ interface SampleGroupSelectionSource {
6
+ samples: string[]
7
+ }
8
+
9
+ export interface UseSampleSelectorSelectionOptions {
10
+ selected: () => string[]
11
+ samples: () => string[]
12
+ findGroup: (groupName: string) => SampleGroupSelectionSource | undefined
13
+ emitSelected: (samples: string[]) => void
14
+ }
15
+
16
+ export interface UseSampleSelectorSelectionReturn {
17
+ isAllSelected: ComputedRef<boolean>
18
+ toggleSelectAll: () => void
19
+ toggleSample: (sample: string) => void
20
+ toggleGroupSamples: (groupName: string) => void
21
+ toggleMajorGroupSamples: (majorGroup: SampleMajorGroup) => void
22
+ isFullySelected: (samples: string[]) => boolean
23
+ isPartiallySelected: (samples: string[]) => boolean
24
+ isGroupFullySelected: (groupName: string) => boolean
25
+ isGroupPartiallySelected: (groupName: string) => boolean
26
+ isMajorGroupFullySelected: (majorGroup: SampleMajorGroup) => boolean
27
+ isMajorGroupPartiallySelected: (majorGroup: SampleMajorGroup) => boolean
28
+ }
29
+
30
+ export function useSampleSelectorSelection(
31
+ options: UseSampleSelectorSelectionOptions,
32
+ ): UseSampleSelectorSelectionReturn {
33
+ const sampleSelection = useListSelection({
34
+ selected: options.selected,
35
+ items: options.samples,
36
+ })
37
+
38
+ function emitSelection(samples: string[]) {
39
+ options.emitSelected(samples)
40
+ }
41
+
42
+ function toggleSelectAll() {
43
+ emitSelection(sampleSelection.toggleAll())
44
+ }
45
+
46
+ function toggleSample(sample: string) {
47
+ emitSelection(sampleSelection.toggleValue(sample))
48
+ }
49
+
50
+ function toggleSamplesSelection(samples: string[]) {
51
+ emitSelection(sampleSelection.toggleValues(samples))
52
+ }
53
+
54
+ function toggleGroupSamples(groupName: string) {
55
+ const group = options.findGroup(groupName)
56
+ if (!group) return
57
+ toggleSamplesSelection(group.samples)
58
+ }
59
+
60
+ function toggleMajorGroupSamples(majorGroup: SampleMajorGroup) {
61
+ toggleSamplesSelection(majorGroup.allSamples)
62
+ }
63
+
64
+ function isFullySelected(samples: string[]): boolean {
65
+ return sampleSelection.isFullySelected(samples)
66
+ }
67
+
68
+ function isPartiallySelected(samples: string[]): boolean {
69
+ return sampleSelection.isPartiallySelected(samples)
70
+ }
71
+
72
+ function isGroupFullySelected(groupName: string): boolean {
73
+ const group = options.findGroup(groupName)
74
+ return group ? isFullySelected(group.samples) : false
75
+ }
76
+
77
+ function isGroupPartiallySelected(groupName: string): boolean {
78
+ const group = options.findGroup(groupName)
79
+ return group ? isPartiallySelected(group.samples) : false
80
+ }
81
+
82
+ function isMajorGroupFullySelected(majorGroup: SampleMajorGroup): boolean {
83
+ return isFullySelected(majorGroup.allSamples)
84
+ }
85
+
86
+ function isMajorGroupPartiallySelected(majorGroup: SampleMajorGroup): boolean {
87
+ return isPartiallySelected(majorGroup.allSamples)
88
+ }
89
+
90
+ return {
91
+ isAllSelected: sampleSelection.isAllSelected,
92
+ toggleSelectAll,
93
+ toggleSample,
94
+ toggleGroupSamples,
95
+ toggleMajorGroupSamples,
96
+ isFullySelected,
97
+ isPartiallySelected,
98
+ isGroupFullySelected,
99
+ isGroupPartiallySelected,
100
+ isMajorGroupFullySelected,
101
+ isMajorGroupPartiallySelected,
102
+ }
103
+ }