@morscherlab/mint-sdk 1.0.0-rc.2 → 1.0.0-rc.5

package/dist/types/auto-group.d.ts

@@ -7,28 +7,98 @@ export interface OutlierInfo {
     fieldCount: number;
     action: OutlierAction;
 }
+export interface MetadataRow {
+    sampleName: string;
+    fields: Record<string, string>;
+    group: string;
+}
+export interface ParsedCsvData {
+    columns: string[];
+    rows: Record<string, string>[];
+    sampleColumn: string;
+    delimiter: string;
+}
+export type SampleClassKind = 'biological' | 'iqc' | 'eqc' | 'standard' | 'spike-in' | 'stock' | 'blank' | 'unknown';
+export type ClassDisposition = 'group' | 'overlay' | 'exclude';
+export interface SampleClass {
+    kind: SampleClassKind;
+    label: string;
+    subKind?: string;
+    members: number[];
+    classTagPositions: number[];
+    disposition: ClassDisposition;
+}
+export type ColumnRole = 'constant' | 'factor' | 'replicate' | 'run-order' | 'numeric' | 'class-tag' | 'ignore';
+export interface NumericParse {
+    value: number;
+    unit: string;
+    raw: string;
+}
+export interface NumericBinning {
+    mode: 'discrete' | 'binned';
+    edges?: number[];
+    labels?: string[];
+}
+export interface ValueOps {
+    alias?: Record<string, string>;
+    exclude?: string[];
+}
 export interface ColumnInfo {
     index: number;
     name: string;
+    sourceIndices: number[];
     uniqueValues: string[];
     cardinality: number;
+    /** Legacy field, retained alongside `role` during the shim window. */
     type?: 'prefix' | 'suffix';
+    role?: ColumnRole;
+    numeric?: {
+        byValue: Record<string, NumericParse>;
+    };
+    binning?: NumericBinning;
+    ops?: ValueOps;
     /** Original CSV column header — used for row lookups when name is renamed */
     originalName?: string;
+    displayName?: string;
 }
-export interface MetadataRow {
-    sampleName: string;
-    fields: Record<string, string>;
-    group: string;
+export interface ClassSchema {
+    classKind: SampleClassKind;
+    subKind?: string;
+    columns: ColumnInfo[];
+    groupBy: number[];
+    replicateColumn?: number;
+}
+export interface MergeSuggestion {
+    classKind: SampleClassKind;
+    subKind?: string;
+    columnIndices: number[];
+    proposedName: string;
+    confidence: number;
 }
 export interface AutoGroupResult {
+    /** All emitted groups, experimental + overlay concatenated for source compat. */
     groups: SampleGroup[];
+    /** Class disposition === 'group' only. */
+    experimentalGroups?: SampleGroup[];
+    /** Class disposition === 'overlay' only. */
+    qcGroups?: SampleGroup[];
     metadata: MetadataRow[];
     excludedSamples: string[];
+    schemas?: ClassSchema[];
+    fingerprint?: SchemaFingerprint;
 }
-export interface ParsedCsvData {
-    columns: string[];
-    rows: Record<string, string>[];
-    sampleColumn: string;
-    delimiter: string;
+export interface SchemaFingerprint {
+    version: 1;
+    classes: Array<{
+        kind: SampleClassKind;
+        subKind?: string;
+        columns: Array<{
+            name: string;
+            role: ColumnRole;
+            sourceIndices: number[];
+            binning?: NumericBinning;
+            ops?: ValueOps;
+        }>;
+        groupBy: number[];
+    }>;
 }

package/dist/types/componentLabTypes.d.ts

@@ -0,0 +1,161 @@
+export type WellPlateFormat = 6 | 12 | 24 | 48 | 54 | 96 | 384;
+export type WellState = 'empty' | 'filled' | 'selected' | 'disabled';
+export type WellPlateSelectionMode = 'none' | 'single' | 'multiple' | 'rectangle' | 'drag';
+export type WellPlateSize = 'sm' | 'md' | 'lg' | 'xl' | 'fill';
+export type WellShape = 'circle' | 'rounded';
+export interface Well {
+    id: string;
+    row: number;
+    col: number;
+    state: WellState;
+    sampleType?: string;
+    value?: number;
+    metadata?: Record<string, unknown>;
+}
+export type HeatmapColorScale = 'viridis' | 'plasma' | 'turbo' | 'custom';
+export interface HeatmapConfig {
+    enabled: boolean;
+    min?: number;
+    max?: number;
+    colorScale?: HeatmapColorScale;
+    customColors?: string[];
+    showLegend?: boolean;
+}
+export type SlotPosition = 'R' | 'G' | 'B' | 'Y';
+export interface WellExtendedData {
+    label?: string;
+    injectionVolume?: number;
+    injectionCount?: number;
+    customMethod?: string | null;
+}
+export interface WellEditData {
+    wellId: string;
+    label: string;
+    sampleType: string;
+    injectionVolume: number;
+    injectionCount: number;
+    customMethod: string;
+}
+export type WellEditField = 'label' | 'sampleType' | 'injectionVolume' | 'injectionCount' | 'customMethod';
+export interface WellSampleDropData {
+    id?: string;
+    sampleName?: string;
+    label?: string;
+    sampleType?: string;
+    injectionVolume?: number;
+    injectionCount?: number;
+    customMethod?: string | null;
+    metadata?: Record<string, unknown>;
+    raw?: unknown;
+}
+export interface WellSampleDropContext {
+    wellId: string;
+    event: DragEvent;
+}
+export type WellSampleDropParser = (event: DragEvent, context: WellSampleDropContext) => WellSampleDropData | null | undefined;
+export interface WellLegendItem {
+    type: string;
+    label: string;
+    color: string;
+}
+export interface PlateCondition {
+    label: string;
+    color: string;
+    concentrations: number[];
+    unit?: string;
+}
+export interface ColumnCondition extends PlateCondition {
+    cols: number[];
+}
+export interface RowCondition extends PlateCondition {
+    rows: string[];
+}
+export interface Rack {
+    id: string;
+    name: string;
+    format: WellPlateFormat;
+    slot: SlotPosition;
+    injectionVolume: number;
+    wells: Record<string, Partial<Well>>;
+}
+export interface RackSampleDropContext {
+    rack: Rack;
+    rackId: string;
+    wellId: string;
+    event: DragEvent;
+}
+export type RackSampleDropMapper = (data: WellSampleDropData, context: RackSampleDropContext) => WellEditData | null | undefined;
+export interface SampleType {
+    id: string;
+    name: string;
+    color?: string;
+    count?: number;
+    description?: string;
+}
+export interface PlateMap {
+    id: string;
+    name: string;
+    format: WellPlateFormat;
+    wells: Record<string, Well>;
+}
+export interface PlateMapEditorState {
+    plates: PlateMap[];
+    activePlateId: string;
+    samples: SampleType[];
+    selectedWells: string[];
+    activeSampleId?: string;
+}
+export type ProtocolStepType = 'incubation' | 'wash' | 'addition' | 'measurement' | 'transfer' | 'centrifuge' | 'mix' | 'custom';
+export type ProtocolStepStatus = 'pending' | 'in_progress' | 'completed' | 'failed' | 'skipped';
+export interface ProtocolStep {
+    id: string;
+    type: ProtocolStepType;
+    name: string;
+    description?: string;
+    duration?: number;
+    status: ProtocolStepStatus;
+    parameters?: Record<string, unknown>;
+    order: number;
+}
+export interface SampleGroup {
+    name: string;
+    color: string;
+    samples: string[];
+}
+export interface GroupItem {
+    name: string;
+    color: string;
+    count: number;
+}
+export type FileUploaderMode = 'file' | 'folder';
+export interface MoleculeData {
+    smiles: string;
+    molfile: string;
+}
+export type StorageCondition = 'RT' | '4C' | '-20C' | '-80C';
+export type ReagentColumn = 'name' | 'catalog' | 'lot' | 'expiry' | 'storage' | 'location' | 'stock' | 'supplier';
+export interface Reagent {
+    id: string;
+    name: string;
+    catalogNumber?: string;
+    lotNumber?: string;
+    expiryDate?: Date | string;
+    storageCondition?: StorageCondition;
+    location?: string;
+    stockLevel?: number;
+    stockUnit?: string;
+    supplier?: string;
+    url?: string;
+}
+export type TreeNodeType = 'study' | 'experiment' | 'plate' | 'sample' | 'cell_line' | 'passage' | 'clone' | 'treatment' | 'folder' | 'custom';
+export type BadgeVariant = 'default' | 'success' | 'warning' | 'error';
+export interface TreeNode {
+    id: string;
+    label: string;
+    type?: TreeNodeType;
+    icon?: string;
+    children?: TreeNode[];
+    metadata?: Record<string, unknown>;
+    badge?: string | number;
+    badgeVariant?: BadgeVariant;
+}

package/dist/types/componentWorkflowTypes.d.ts

@@ -0,0 +1,150 @@
+import { UserSummary } from './platform';
+export type NumberNotation = 'auto' | 'scientific' | 'engineering' | 'compact';
+export interface UnitOption {
+    value: string;
+    label: string;
+    factor?: number;
+    group?: string;
+}
+export interface WizardStep {
+    id: string;
+    label: string;
+    description?: string;
+    icon?: string;
+    optional?: boolean;
+}
+export type WizardStepState = 'pending' | 'active' | 'completed' | 'disabled';
+export type AuditEntryType = 'create' | 'update' | 'delete' | 'system';
+export interface AuditEntry {
+    id: string;
+    type: AuditEntryType;
+    action: string;
+    detail?: string;
+    user?: string;
+    timestamp: Date | string;
+    metadata?: Record<string, unknown>;
+}
+export type BatchItemStatus = 'pending' | 'processing' | 'completed' | 'error' | 'skipped';
+export interface BatchItem {
+    id: string;
+    label: string;
+    status: BatchItemStatus;
+    progress?: number;
+    message?: string;
+}
+export interface BatchSummary {
+    total: number;
+    completed: number;
+    processing: number;
+    error: number;
+    pending: number;
+    skipped: number;
+    percent: number;
+}
+export type TimePickerFormat = '12h' | '24h';
+export interface TimeRange {
+    start: string;
+    end: string;
+}
+export type ScheduleView = 'day' | 'week' | 'month';
+export type ScheduleEventStatus = 'confirmed' | 'pending' | 'cancelled' | 'in-progress';
+export interface ScheduleEvent {
+    id: string;
+    start: string;
+    end: string;
+    title: string;
+    color?: string;
+    status?: ScheduleEventStatus;
+    draggable?: boolean;
+    resizable?: boolean;
+    metadata?: Record<string, unknown>;
+}
+export interface ScheduleBlockedSlot {
+    start: string;
+    end: string;
+    label?: string;
+}
+export interface ScheduleSlotContext {
+    date: Date;
+    hour: number;
+    minute: number;
+}
+export interface ScheduleEventCreateContext {
+    start: Date;
+    end: Date;
+}
+export interface ScheduleEventUpdateContext {
+    event: ScheduleEvent;
+    newStart: Date;
+    newEnd: Date;
+}
+export interface SummarySectionItem {
+    label: string;
+    metadata?: Record<string, unknown>;
+    item_count: number;
+    item_key: string;
+    columns: string[];
+    rows: Record<string, unknown>[];
+}
+export interface SummarySection {
+    key: string;
+    label: string;
+    type: 'table' | 'group';
+    /** Group sections: list of group items with embedded tables */
+    items?: SummarySectionItem[];
+    /** Table sections: flat table columns and rows */
+    columns?: string[];
+    rows?: Record<string, unknown>[];
+    row_count?: number;
+}
+export interface SummaryData {
+    metadata: Record<string, unknown>;
+    sections: SummarySection[];
+}
+export type ResourceStatus = 'available' | 'in-use' | 'maintenance' | 'offline';
+export interface ResourceSpec {
+    label: string;
+    value: string;
+}
+export type ExperimentStatus = 'planned' | 'ongoing' | 'completed' | 'cancelled';
+export type DatePreset = 'last_7_days' | 'last_30_days' | 'last_90_days';
+export type ExperimentSortField = 'created_at' | 'updated_at' | 'name' | 'status';
+export interface ExperimentTypeOption {
+    value: string;
+    label: string;
+    color?: string;
+}
+export interface ExperimentSummary {
+    id: number;
+    experiment_code?: string;
+    name: string;
+    status: ExperimentStatus;
+    experiment_type: string;
+    project?: string;
+    project_id?: number;
+    project_name?: string;
+    notes?: string;
+    tags?: Record<string, unknown>;
+    created_at: string;
+    updated_at: string;
+    created_by?: number;
+    created_by_user?: UserSummary;
+    has_design_data: boolean;
+}
+export interface ExperimentListResponse {
+    experiments: ExperimentSummary[];
+    total: number;
+}
+export interface ExperimentFilters {
+    search?: string;
+    status?: ExperimentStatus | null;
+    project?: string | null;
+    experimentType?: string | null;
+    datePreset?: DatePreset | null;
+}
+export type FitState = 'idle' | 'running' | 'completed' | 'error';
+export interface FitResultSummary {
+    label: string;
+    value: string | number;
+    variant?: 'default' | 'success' | 'warning' | 'error';
+}