npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<a name='L177'></a><a href='#L177'>177</a>
+<a name='L178'></a><a href='#L178'>178</a>
+<a name='L179'></a><a href='#L179'>179</a>
+<a name='L180'></a><a href='#L180'>180</a>
+<a name='L181'></a><a href='#L181'>181</a>
+<a name='L182'></a><a href='#L182'>182</a>
+<a name='L183'></a><a href='#L183'>183</a>
+<a name='L184'></a><a href='#L184'>184</a>
+<a name='L185'></a><a href='#L185'>185</a>
+<a name='L186'></a><a href='#L186'>186</a>
+<a name='L187'></a><a href='#L187'>187</a>
+<a name='L188'></a><a href='#L188'>188</a>
+<a name='L189'></a><a href='#L189'>189</a>
+<a name='L190'></a><a href='#L190'>190</a>
+<a name='L191'></a><a href='#L191'>191</a>
+<a name='L192'></a><a href='#L192'>192</a>
+<a name='L193'></a><a href='#L193'>193</a>
+<a name='L194'></a><a href='#L194'>194</a>
+<a name='L195'></a><a href='#L195'>195</a>
+<a name='L196'></a><a href='#L196'>196</a>
+<a name='L197'></a><a href='#L197'>197</a>
+<a name='L198'></a><a href='#L198'>198</a>
+<a name='L199'></a><a href='#L199'>199</a>
+<a name='L200'></a><a href='#L200'>200</a>
+<a name='L201'></a><a href='#L201'>201</a>
+<a name='L202'></a><a href='#L202'>202</a>
+<a name='L203'></a><a href='#L203'>203</a>
+<a name='L204'></a><a href='#L204'>204</a>
+<a name='L205'></a><a href='#L205'>205</a>
+<a name='L206'></a><a href='#L206'>206</a>
+<a name='L207'></a><a href='#L207'>207</a>
+<a name='L208'></a><a href='#L208'>208</a>
+<a name='L209'></a><a href='#L209'>209</a>
+<a name='L210'></a><a href='#L210'>210</a>
+<a name='L211'></a><a href='#L211'>211</a>
+<a name='L212'></a><a href='#L212'>212</a>
+<a name='L213'></a><a href='#L213'>213</a>
+<a name='L214'></a><a href='#L214'>214</a>
+<a name='L215'></a><a href='#L215'>215</a>
+<a name='L216'></a><a href='#L216'>216</a>
+<a name='L217'></a><a href='#L217'>217</a>
+<a name='L218'></a><a href='#L218'>218</a>
+<a name='L219'></a><a href='#L219'>219</a>
+<a name='L220'></a><a href='#L220'>220</a>
+<a name='L221'></a><a href='#L221'>221</a>
+<a name='L222'></a><a href='#L222'>222</a>
+<a name='L223'></a><a href='#L223'>223</a>
+<a name='L224'></a><a href='#L224'>224</a>
+<a name='L225'></a><a href='#L225'>225</a>
+<a name='L226'></a><a href='#L226'>226</a>
+<a name='L227'></a><a href='#L227'>227</a>
+<a name='L228'></a><a href='#L228'>228</a>
+<a name='L229'></a><a href='#L229'>229</a>
+<a name='L230'></a><a href='#L230'>230</a>
+<a name='L231'></a><a href='#L231'>231</a>
+<a name='L232'></a><a href='#L232'>232</a>
+<a name='L233'></a><a href='#L233'>233</a>
+<a name='L234'></a><a href='#L234'>234</a>
+<a name='L235'></a><a href='#L235'>235</a>
+<a name='L236'></a><a href='#L236'>236</a>
+<a name='L237'></a><a href='#L237'>237</a>
+<a name='L238'></a><a href='#L238'>238</a>
+<a name='L239'></a><a href='#L239'>239</a>
+<a name='L240'></a><a href='#L240'>240</a>
+<a name='L241'></a><a href='#L241'>241</a>
+<a name='L242'></a><a href='#L242'>242</a>
+<a name='L243'></a><a href='#L243'>243</a>
+<a name='L244'></a><a href='#L244'>244</a>
+<a name='L245'></a><a href='#L245'>245</a>
+<a name='L246'></a><a href='#L246'>246</a>
+<a name='L247'></a><a href='#L247'>247</a>
+<a name='L248'></a><a href='#L248'>248</a>
+<a name='L249'></a><a href='#L249'>249</a>
+<a name='L250'></a><a href='#L250'>250</a>
+<a name='L251'></a><a href='#L251'>251</a>
+<a name='L252'></a><a href='#L252'>252</a>
+<a name='L253'></a><a href='#L253'>253</a>
+<a name='L254'></a><a href='#L254'>254</a>
+<a name='L255'></a><a href='#L255'>255</a>
+<a name='L256'></a><a href='#L256'>256</a>
+<a name='L257'></a><a href='#L257'>257</a>
+<a name='L258'></a><a href='#L258'>258</a>
+<a name='L259'></a><a href='#L259'>259</a>
+<a name='L260'></a><a href='#L260'>260</a>
+<a name='L261'></a><a href='#L261'>261</a>
+<a name='L262'></a><a href='#L262'>262</a>
+<a name='L263'></a><a href='#L263'>263</a>
+<a name='L264'></a><a href='#L264'>264</a>
+<a name='L265'></a><a href='#L265'>265</a>
+<a name='L266'></a><a href='#L266'>266</a>
+<a name='L267'></a><a href='#L267'>267</a>
+<a name='L268'></a><a href='#L268'>268</a>
+<a name='L269'></a><a href='#L269'>269</a>
+<a name='L270'></a><a href='#L270'>270</a>
+<a name='L271'></a><a href='#L271'>271</a>
+<a name='L272'></a><a href='#L272'>272</a>
+<a name='L273'></a><a href='#L273'>273</a>
+<a name='L274'></a><a href='#L274'>274</a>
+<a name='L275'></a><a href='#L275'>275</a>
+<a name='L276'></a><a href='#L276'>276</a>
+<a name='L277'></a><a href='#L277'>277</a>
+<a name='L278'></a><a href='#L278'>278</a>
+<a name='L279'></a><a href='#L279'>279</a>
+<a name='L280'></a><a href='#L280'>280</a>
+<a name='L281'></a><a href='#L281'>281</a>
+<a name='L282'></a><a href='#L282'>282</a>
+<a name='L283'></a><a href='#L283'>283</a>
+<a name='L284'></a><a href='#L284'>284</a>
+<a name='L285'></a><a href='#L285'>285</a>
+<a name='L286'></a><a href='#L286'>286</a>
+<a name='L287'></a><a href='#L287'>287</a>
+<a name='L288'></a><a href='#L288'>288</a>
+<a name='L289'></a><a href='#L289'>289</a>
+<a name='L290'></a><a href='#L290'>290</a>
+<a name='L291'></a><a href='#L291'>291</a>
+<a name='L292'></a><a href='#L292'>292</a>
+<a name='L293'></a><a href='#L293'>293</a>
+<a name='L294'></a><a href='#L294'>294</a>
+<a name='L295'></a><a href='#L295'>295</a>
+<a name='L296'></a><a href='#L296'>296</a>
+<a name='L297'></a><a href='#L297'>297</a>
+<a name='L298'></a><a href='#L298'>298</a>
+<a name='L299'></a><a href='#L299'>299</a>
+<a name='L300'></a><a href='#L300'>300</a>
+<a name='L301'></a><a href='#L301'>301</a>
+<a name='L302'></a><a href='#L302'>302</a>
+<a name='L303'></a><a href='#L303'>303</a>
+<a name='L304'></a><a href='#L304'>304</a>
+<a name='L305'></a><a href='#L305'>305</a>
+<a name='L306'></a><a href='#L306'>306</a>
+<a name='L307'></a><a href='#L307'>307</a>
+<a name='L308'></a><a href='#L308'>308</a>
+<a name='L309'></a><a href='#L309'>309</a>
+<a name='L310'></a><a href='#L310'>310</a>
+<a name='L311'></a><a href='#L311'>311</a>
+<a name='L312'></a><a href='#L312'>312</a>
+<a name='L313'></a><a href='#L313'>313</a>
+<a name='L314'></a><a href='#L314'>314</a>
+<a name='L315'></a><a href='#L315'>315</a>
+<a name='L316'></a><a href='#L316'>316</a>
+<a name='L317'></a><a href='#L317'>317</a>
+<a name='L318'></a><a href='#L318'>318</a>
+<a name='L319'></a><a href='#L319'>319</a>
+<a name='L320'></a><a href='#L320'>320</a>
+<a name='L321'></a><a href='#L321'>321</a>
+<a name='L322'></a><a href='#L322'>322</a>
+<a name='L323'></a><a href='#L323'>323</a>
+<a name='L324'></a><a href='#L324'>324</a>
+<a name='L325'></a><a href='#L325'>325</a>
+<a name='L326'></a><a href='#L326'>326</a>
+<a name='L327'></a><a href='#L327'>327</a>
+<a name='L328'></a><a href='#L328'>328</a>
+<a name='L329'></a><a href='#L329'>329</a>
+<a name='L330'></a><a href='#L330'>330</a>
+<a name='L331'></a><a href='#L331'>331</a>
+<a name='L332'></a><a href='#L332'>332</a>
+<a name='L333'></a><a href='#L333'>333</a>
+<a name='L334'></a><a href='#L334'>334</a>
+<a name='L335'></a><a href='#L335'>335</a>
+<a name='L336'></a><a href='#L336'>336</a>
+<a name='L337'></a><a href='#L337'>337</a>
+<a name='L338'></a><a href='#L338'>338</a>
+<a name='L339'></a><a href='#L339'>339</a>
+<a name='L340'></a><a href='#L340'>340</a>
+<a name='L341'></a><a href='#L341'>341</a>
+<a name='L342'></a><a href='#L342'>342</a>
+<a name='L343'></a><a href='#L343'>343</a>
+<a name='L344'></a><a href='#L344'>344</a>
+<a name='L345'></a><a href='#L345'>345</a>
+<a name='L346'></a><a href='#L346'>346</a>
+<a name='L347'></a><a href='#L347'>347</a>
+<a name='L348'></a><a href='#L348'>348</a>
+<a name='L349'></a><a href='#L349'>349</a>
+<a name='L350'></a><a href='#L350'>350</a>
+<a name='L351'></a><a href='#L351'>351</a>
+<a name='L352'></a><a href='#L352'>352</a>
+<a name='L353'></a><a href='#L353'>353</a>
+<a name='L354'></a><a href='#L354'>354</a>
+<a name='L355'></a><a href='#L355'>355</a>
+<a name='L356'></a><a href='#L356'>356</a>
+<a name='L357'></a><a href='#L357'>357</a>
+<a name='L358'></a><a href='#L358'>358</a>
+<a name='L359'></a><a href='#L359'>359</a>
+<a name='L360'></a><a href='#L360'>360</a>
+<a name='L361'></a><a href='#L361'>361</a>
+<a name='L362'></a><a href='#L362'>362</a>
+<a name='L363'></a><a href='#L363'>363</a>
+<a name='L364'></a><a href='#L364'>364</a>
+<a name='L365'></a><a href='#L365'>365</a>
+<a name='L366'></a><a href='#L366'>366</a>
+<a name='L367'></a><a href='#L367'>367</a>
+<a name='L368'></a><a href='#L368'>368</a>
+<a name='L369'></a><a href='#L369'>369</a>
+<a name='L370'></a><a href='#L370'>370</a>
+<a name='L371'></a><a href='#L371'>371</a>
+<a name='L372'></a><a href='#L372'>372</a>
+<a name='L373'></a><a href='#L373'>373</a>
+<a name='L374'></a><a href='#L374'>374</a>
+<a name='L375'></a><a href='#L375'>375</a>
+<a name='L376'></a><a href='#L376'>376</a>
+<a name='L377'></a><a href='#L377'>377</a>
+<a name='L378'></a><a href='#L378'>378</a>
+<a name='L379'></a><a href='#L379'>379</a>
+<a name='L380'></a><a href='#L380'>380</a>
+<a name='L381'></a><a href='#L381'>381</a>
+<a name='L382'></a><a href='#L382'>382</a>
+<a name='L383'></a><a href='#L383'>383</a>
+<a name='L384'></a><a href='#L384'>384</a>
+<a name='L385'></a><a href='#L385'>385</a>
+<a name='L386'></a><a href='#L386'>386</a>
+<a name='L387'></a><a href='#L387'>387</a>
+<a name='L388'></a><a href='#L388'>388</a>
+<a name='L389'></a><a href='#L389'>389</a>
+<a name='L390'></a><a href='#L390'>390</a>
+<a name='L391'></a><a href='#L391'>391</a>
+<a name='L392'></a><a href='#L392'>392</a>
+<a name='L393'></a><a href='#L393'>393</a>
+<a name='L394'></a><a href='#L394'>394</a>
+<a name='L395'></a><a href='#L395'>395</a>
+<a name='L396'></a><a href='#L396'>396</a>
+<a name='L397'></a><a href='#L397'>397</a>
+<a name='L398'></a><a href='#L398'>398</a>
+<a name='L399'></a><a href='#L399'>399</a>
+<a name='L400'></a><a href='#L400'>400</a>
+<a name='L401'></a><a href='#L401'>401</a>
+<a name='L402'></a><a href='#L402'>402</a>
+<a name='L403'></a><a href='#L403'>403</a>
+<a name='L404'></a><a href='#L404'>404</a>
+<a name='L405'></a><a href='#L405'>405</a>
+<a name='L406'></a><a href='#L406'>406</a>
+<a name='L407'></a><a href='#L407'>407</a>
+<a name='L408'></a><a href='#L408'>408</a>
+<a name='L409'></a><a href='#L409'>409</a>
+<a name='L410'></a><a href='#L410'>410</a>
+<a name='L411'></a><a href='#L411'>411</a>
+<a name='L412'></a><a href='#L412'>412</a>
+<a name='L413'></a><a href='#L413'>413</a>
+<a name='L414'></a><a href='#L414'>414</a>
+<a name='L415'></a><a href='#L415'>415</a>
+<a name='L416'></a><a href='#L416'>416</a>
+<a name='L417'></a><a href='#L417'>417</a>
+<a name='L418'></a><a href='#L418'>418</a>
+<a name='L419'></a><a href='#L419'>419</a>
+<a name='L420'></a><a href='#L420'>420</a>
+<a name='L421'></a><a href='#L421'>421</a>
+<a name='L422'></a><a href='#L422'>422</a>
+<a name='L423'></a><a href='#L423'>423</a>
+<a name='L424'></a><a href='#L424'>424</a>
+<a name='L425'></a><a href='#L425'>425</a>
+<a name='L426'></a><a href='#L426'>426</a>
+<a name='L427'></a><a href='#L427'>427</a>
+<a name='L428'></a><a href='#L428'>428</a>
+<a name='L429'></a><a href='#L429'>429</a>
+<a name='L430'></a><a href='#L430'>430</a>
+<a name='L431'></a><a href='#L431'>431</a>
+<a name='L432'></a><a href='#L432'>432</a></td><td class="line-coverage quiet"><span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
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+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">42x</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
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+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">42x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">42x</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">13x</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-yes">13x</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import { writeFileSync } from 'fs';
+import { join } from 'path';
+import type { MonographDb } from '../storage/db.js';
+import { openDb, closeDb } from '../storage/db.js';
+import { checkStaleness } from '../staleness/git-staleness.js';
+import type { SuggestedQuestion } from '../types.js';
+&nbsp;
+export interface GraphReportResult {
+  markdown: string;
+  path: string;
+  stats: {
+    nodeCount: number;
+    edgeCount: number;
+    communityCount: number;
+  };
+}
+&nbsp;
+interface NodeTypeStat {
+  label: string;
+  count: number;
+}
+&nbsp;
+interface EdgeRelationStat {
+  relation: string;
+  count: number;
+}
+&nbsp;
+interface TopDegreeNode {
+  id: string;
+  name: string;
+  label: string;
+  degree: number;
+}
+&nbsp;
+interface CommunityStat {
+  id: number;
+  label: string | null;
+  memberCount: number;
+}
+&nbsp;
+function queryNodesByType(db: MonographDb): NodeTypeStat[] {
+  const rows = db.prepare(`
+    SELECT label, COUNT(*) as count FROM nodes GROUP BY label ORDER BY count DESC
+  `).all() as { label: string; count: number }[];
+  return rows;
+}
+&nbsp;
+function queryEdgesByRelation(db: MonographDb): EdgeRelationStat[] {
+  const rows = db.prepare(`
+    SELECT relation, COUNT(*) as count FROM edges GROUP BY relation ORDER BY count DESC
+  `).all() as { relation: string; count: number }[];
+  return rows;
+}
+&nbsp;
+function queryTopNodesByDegree(db: MonographDb, limit = 10): TopDegreeNode[] {
+  const rows = db.prepare(`
+    SELECT n.id, n.name, n.label, COALESCE(d.degree, 0) AS degree
+    FROM nodes n
+    LEFT JOIN (
+      SELECT node_id, SUM(cnt) AS degree FROM (
+        SELECT source_id AS node_id, COUNT(*) AS cnt FROM edges GROUP BY source_id
+        UNION ALL
+        SELECT target_id AS node_id, COUNT(*) AS cnt FROM edges GROUP BY target_id
+      ) GROUP BY node_id
+    ) d ON d.node_id = n.id
+    ORDER BY degree DESC
+    LIMIT ?
+  `).all(limit) as TopDegreeNode[];
+  return rows;
+}
+&nbsp;
+function queryConfidenceBreakdown(db: MonographDb): { confidence: string; count: number }[] {
+  const rows = db.prepare(`
+    SELECT confidence, COUNT(*) as count FROM edges GROUP BY confidence ORDER BY count DESC
+  `).all() as { confidence: string; count: number }[];
+  return rows;
+}
+&nbsp;
+function buildKnowledgeGapSection(db: MonographDb): string {
+  // Isolated nodes: nodes with no edges (excluding File/Folder structural nodes)
+  const isolated = db.prepare(`
+    SELECT n.id, n.name, n.label FROM nodes n
+    WHERE n.label NOT IN ('File','Folder')
+    AND n.id NOT IN (SELECT source_id FROM edges)
+    AND n.id NOT IN (SELECT target_id FROM edges)
+    LIMIT 20
+  `).all() as { id: string; name: string; label: string }[];
+&nbsp;
+  // Thin communities: community_id groups with fewer than 3 members
+  const thin = db.prepare(`
+    SELECT community_id, COUNT(*) as cnt FROM nodes
+    WHERE community_id IS NOT NULL
+    GROUP BY community_id
+    HAVING cnt &lt; 3
+    LIMIT 10
+  `).all() as { community_id: number; cnt: number }[];
+&nbsp;
+  if (isolated.length === 0 &amp;&amp; thin.length === 0) return '';
+&nbsp;
+  const lines = ['## Knowledge Gaps\n'];
+&nbsp;
+  if (isolated.length &gt; 0) {
+    lines.push(`### Isolated Nodes (${isolated.length})\n`);
+    lines.push('Nodes with no edges — may indicate dead code or missing imports:\n');
+    for (const n of isolated.slice(0, 10)) {
+      lines.push(`- **${n.label}** \`${n.name}\``);
+    }
+    lines.push('');
+  }
+&nbsp;
+  <span class="missing-if-branch" title="else path not taken" >E</span>if (thin.length &gt; 0) {
+    lines.push(`### Thin Communities (${thin.length})\n`);
+    lines.push('Communities with fewer than 3 members — may need merging:\n');
+    for (const t of thin) {
+      lines.push(`- Community ${t.community_id}: ${t.cnt} member${t.cnt === 1 ? '' : 's'}`);
+    }
+    lines.push('');
+  }
+&nbsp;
+  return lines.join('\n');
+}
+&nbsp;
+function buildConfidenceAuditSection(db: MonographDb): string {
+  const rows = queryConfidenceBreakdown(db);
+  if (rows.length === 0) return '';
+  const total = rows.reduce((s, r) =&gt; s + r.count, 0);
+  const lines = ['## Confidence Audit\n'];
+  lines.push('| Confidence | Count | Percentage |');
+  lines.push('|-----------|-------|------------|');
+  for (const r of rows) {
+    const pct = total &gt; 0 ? ((r.count / total) * 100).toFixed(1) : <span class="branch-1 cbranch-no" title="branch not covered" >'0.0';</span>
+    lines.push(`| ${r.confidence} | ${r.count} | ${pct}% |`);
+  }
+  lines.push('');
+  return lines.join('\n');
+}
+&nbsp;
+function queryCommunities(db: MonographDb): CommunityStat[] {
+  // Get communities from nodes (community_id column)
+  const rows = db.prepare(`
+    SELECT community_id as id, COUNT(*) as memberCount
+    FROM nodes
+    WHERE community_id IS NOT NULL
+    GROUP BY community_id
+    ORDER BY memberCount DESC
+  `).all() as { id: number; memberCount: number }[];
+&nbsp;
+  // Try to get labels from communities table
+  const labelMap = new Map&lt;number, string | null&gt;();
+  try {
+    const labels = db.prepare(`SELECT id, label FROM communities`).all() as { id: number; label: string | null }[];
+    for (const l of labels) <span class="cstat-no" title="statement not covered" >labelMap.set(l.id, l.label);</span>
+  } catch {
+    // communities table may not have data
+  }
+&nbsp;
+  return rows.map(r =&gt; ({ id: r.id, label: labelMap.get(r.id) ?? null, memberCount: r.memberCount }));
+}
+&nbsp;
+function queryNodeCount(db: MonographDb): number {
+  const row = db.prepare('SELECT COUNT(*) as n FROM nodes').get() as { n: number };
+  return row.n;
+}
+&nbsp;
+function queryEdgeCount(db: MonographDb): number {
+  const row = db.prepare('SELECT COUNT(*) as n FROM edges').get() as { n: number };
+  return row.n;
+}
+&nbsp;
+function buildMarkdown(
+  nodeCount: number,
+  edgeCount: number,
+  nodesByType: NodeTypeStat[],
+  edgesByRelation: EdgeRelationStat[],
+  topNodes: TopDegreeNode[],
+  communities: CommunityStat[],
+  staleFiles: string[],
+  confidenceSection = '',
+): string {
+  const timestamp = new Date().toISOString();
+  const lines: string[] = [];
+&nbsp;
+  lines.push(`# Graph Report`);
+  lines.push('');
+  lines.push(`_Generated: ${timestamp}_`);
+  lines.push('');
+&nbsp;
+  // Summary
+  lines.push('## Summary');
+  lines.push('');
+  lines.push(`| Metric | Value |`);
+  lines.push(`|--------|-------|`);
+  lines.push(`| Total nodes | ${nodeCount} |`);
+  lines.push(`| Total edges | ${edgeCount} |`);
+  lines.push(`| Communities | ${communities.length} |`);
+  lines.push('');
+&nbsp;
+  // Nodes by type
+  lines.push('## Nodes by Type');
+  lines.push('');
+  if (nodesByType.length &gt; 0) {
+    lines.push('| Label | Count |');
+    lines.push('|-------|-------|');
+    for (const { label, count } of nodesByType) {
+      lines.push(`| ${label} | ${count} |`);
+    }
+  } else {
+    lines.push('_No nodes found._');
+  }
+  lines.push('');
+&nbsp;
+  // Edges by relation
+  lines.push('## Edges by Relation');
+  lines.push('');
+  if (edgesByRelation.length &gt; 0) {
+    lines.push('| Relation | Count |');
+    lines.push('|----------|-------|');
+    for (const { relation, count } of edgesByRelation) {
+      lines.push(`| ${relation} | ${count} |`);
+    }
+  } else {
+    lines.push('_No edges found._');
+  }
+  lines.push('');
+&nbsp;
+  // Top 10 nodes by degree
+  lines.push('## Top Nodes by Degree');
+  lines.push('');
+  if (topNodes.length &gt; 0) {
+    lines.push('| Rank | Name | Type | Degree |');
+    lines.push('|------|------|------|--------|');
+    topNodes.forEach((node, idx) =&gt; {
+      lines.push(`| ${idx + 1} | \`${node.name}\` | ${node.label} | ${node.degree} |`);
+    });
+  } else {
+    lines.push('_No nodes found._');
+  }
+  lines.push('');
+&nbsp;
+  // Communities
+  lines.push('## Communities');
+  lines.push('');
+  if (communities.length &gt; 0) {
+    for (const c of communities) {
+      const name = c.label ?? `Community ${c.id}`;
+      lines.push(`- **${name}** (id: ${c.id}) — ${c.memberCount} members`);
+    }
+  } else {
+    lines.push('_No communities detected._');
+  }
+  lines.push('');
+&nbsp;
+  // Stale files
+  lines.push('## Stale Files');
+  lines.push('');
+  <span class="missing-if-branch" title="if path not taken" >I</span>if (staleFiles.length &gt; 0) {
+<span class="cstat-no" title="statement not covered" >    for (const f of staleFiles) {</span>
+<span class="cstat-no" title="statement not covered" >      lines.push(`- \`${f}\``);</span>
+    }
+  } else {
+    lines.push('_No stale files detected._');
+  }
+  lines.push('');
+&nbsp;
+  if (confidenceSection) {
+    lines.push(confidenceSection);
+  }
+&nbsp;
+  return lines.join('\n');
+}
+&nbsp;
+export function buildMarkdownWithQuestions(
+  nodeCount: number,
+  edgeCount: number,
+  nodesByType: NodeTypeStat[],
+  edgesByRelation: EdgeRelationStat[],
+  topNodes: TopDegreeNode[],
+  communities: CommunityStat[],
+  staleFiles: string[],
+  questions: SuggestedQuestion[],
+  confidenceSection = '',
+): string {
+  let md = buildMarkdown(nodeCount, edgeCount, nodesByType, edgesByRelation, topNodes, communities, staleFiles, confidenceSection);
+&nbsp;
+  if (questions.length === 0) return md;
+&nbsp;
+  const capped = questions.slice(0, 20);
+  const lines: string[] = ['## Suggested Questions', ''];
+  for (const q of capped) {
+    if (q.type === 'bridge_node') {
+      lines.push(`- **bridge_node**: \`${q.node.name}\` bridges community ${q.commA} and ${q.commB}`);
+    } else if (q.type === 'ambiguous_edge') {
+      lines.push(`- **ambiguous_edge**: \`${q.edge.sourceId}\` → \`${q.edge.targetId}\` — ${q.reason}`);
+    } else <span class="missing-if-branch" title="if path not taken" >I</span>if (q.type === 'verify_inferred') {
+<span class="cstat-no" title="statement not covered" >      lines.push(`- **verify_inferred**: \`${q.edge.sourceId}\` → \`${q.edge.targetId}\` (inferred from ${q.inferredFrom})`);</span>
+    } else if (q.type === 'isolated_nodes') {
+      const names = q.nodes.map(n =&gt; `\`${n.name}\``).join(', ');
+      lines.push(`- **isolated_nodes**: ${names} — ${q.reason}`);
+    } else <span class="missing-if-branch" title="if path not taken" >I</span>if (q.type === 'low_cohesion') {
+<span class="cstat-no" title="statement not covered" >      lines.push(`- **low_cohesion**: community ${q.community.id} (cohesion: ${q.community.cohesionScore.toFixed(2)})`);</span>
+    }
+  }
+  lines.push('');
+  md = md + '\n' + lines.join('\n');
+  return md;
+}
+&nbsp;
+/**
+ * Generates a graph report synchronously from an existing DB instance.
+ * Writes the markdown to outputPath/GRAPH_REPORT.md and returns the result.
+ */
+export function generateGraphReportFromDb(
+  db: MonographDb,
+  outputPath: string,
+): GraphReportResult {
+  const resolvedOutputPath = join(outputPath, 'GRAPH_REPORT.md');
+  const nodeCount = queryNodeCount(db);
+  const edgeCount = queryEdgeCount(db);
+  const nodesByType = queryNodesByType(db);
+  const edgesByRelation = queryEdgesByRelation(db);
+  const topNodes = queryTopNodesByDegree(db, 10);
+  const communities = queryCommunities(db);
+  const confidenceSection = buildConfidenceAuditSection(db);
+&nbsp;
+  const gapSection = buildKnowledgeGapSection(db);
+  const markdown = buildMarkdownWithQuestions(
+    nodeCount,
+    edgeCount,
+    nodesByType,
+    edgesByRelation,
+    topNodes,
+    communities,
+    [],
+    [],
+    confidenceSection,
+  ) + (gapSection ? '\n' + gapSection : '');
+&nbsp;
+  writeFileSync(resolvedOutputPath, markdown, 'utf8');
+&nbsp;
+  return {
+    markdown,
+    path: resolvedOutputPath,
+    stats: {
+      nodeCount,
+      edgeCount,
+      communityCount: communities.length,
+    },
+  };
+}
+&nbsp;
+/**
+ * Generates a GRAPH_REPORT.md summarizing the knowledge graph.
+ *
+ * Overload 1: accepts an existing DB instance and output directory (synchronous).
+ * Overload 2: accepts a repo path string and optional params (async, opens its own DB).
+ */
+export function generateGraphReport(db: MonographDb, outputPath: string): GraphReportResult;
+export function generateGraphReport(
+  repoPath: string,
+  outputPath?: string,
+  dbPath?: string,
+  questions?: SuggestedQuestion[],
+): Promise&lt;GraphReportResult&gt;;
+export function generateGraphReport(
+  dbOrRepoPath: MonographDb | string,
+  outputPath?: string,
+  dbPath?: string,
+  questions: SuggestedQuestion[] = [],
+): GraphReportResult | Promise&lt;GraphReportResult&gt; {
+  // Sync overload: first arg is a DB instance
+  if (typeof dbOrRepoPath !== 'string') {
+    const db = dbOrRepoPath;
+    return generateGraphReportFromDb(db, outputPath ?? <span class="branch-1 cbranch-no" title="branch not covered" >'/tmp')</span>;
+  }
+&nbsp;
+  // Async overload: first arg is a repo path string
+  const repoPath = dbOrRepoPath;
+  const resolvedDbPath = <span class="branch-1 cbranch-no" title="branch not covered" >dbPath ?? join(repoPath, '.monograph', 'graph.db');</span>
+  const resolvedOutputPath = outputPath ?? join(repoPath, 'GRAPH_REPORT.md');
+&nbsp;
+  return (async () =&gt; {
+    const db = openDb(resolvedDbPath);
+    try {
+      const nodeCount = queryNodeCount(db);
+      const edgeCount = queryEdgeCount(db);
+      const nodesByType = queryNodesByType(db);
+      const edgesByRelation = queryEdgesByRelation(db);
+      const topNodes = queryTopNodesByDegree(db, 10);
+      const communities = queryCommunities(db);
+&nbsp;
+      // Stale files from git-staleness
+      let staleFiles: string[] = [];
+      try {
+        const stalenessReport = checkStaleness(db, repoPath);
+        <span class="missing-if-branch" title="if path not taken" >I</span>if (stalenessReport.isStale &amp;&amp; <span class="branch-1 cbranch-no" title="branch not covered" >stalenessReport.changedSince.length &gt; 0) {</span>
+<span class="cstat-no" title="statement not covered" >          staleFiles = stalenessReport.changedSince;</span>
+        }
+      } catch {
+        // Staleness check is best-effort
+      }
+&nbsp;
+      const confidenceSection = buildConfidenceAuditSection(db);
+      const gapSection = buildKnowledgeGapSection(db);
+      const markdown = buildMarkdownWithQuestions(
+        nodeCount,
+        edgeCount,
+        nodesByType,
+        edgesByRelation,
+        topNodes,
+        communities,
+        staleFiles,
+        questions,
+        confidenceSection,
+      ) + (gapSection ? '\n' + gapSection : '');
+&nbsp;
+      writeFileSync(resolvedOutputPath, markdown, 'utf8');
+&nbsp;
+      return {
+        markdown,
+        path: resolvedOutputPath,
+        stats: {
+          nodeCount,
+          edgeCount,
+          communityCount: communities.length,
+        },
+      };
+    } finally {
+      closeDb(db);
+    }
+  })();
+}
+&nbsp;</pre></td></tr></table></pre>
+                <div class='push'></div><!-- for sticky footer -->
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+            <div class='footer quiet pad2 space-top1 center small'>
+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
+        <script src="../../prettify.js"></script>
+        <script>
+            window.onload = function () {
+                prettyPrint();
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