npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import { readFileSync, statSync, readdirSync } from 'fs';
+import { extname, basename, join, relative } from 'path';
+import type { PipelinePhase, PipelineContext } from '../types.js';
+import type { MonographNode, MonographEdge } from '../../types.js';
+import { makeId, toNormLabel, CONFIDENCE_SCORE } from '../../types.js';
+import { insertNodes } from '../../storage/node-store.js';
+import { insertEdges } from '../../storage/edge-store.js';
+&nbsp;
+const IGNORE_DIRS = <span class="cstat-no" title="statement not covered" >new Set([</span>
+  'node_modules', '.git', 'dist', 'build', '__pycache__',
+  '.cache', 'coverage', '.monomind', 'vendor', 'target',
+  '.worktrees',
+]);
+&nbsp;
+export interface PdfParseOutput {
+  sectionNodes: MonographNode[];
+  pdfFiles: number;
+}
+&nbsp;
+function <span class="fstat-no" title="function not covered" >walkPdfs(d</span>ir: string, repoPath: string, ignore: string[]): string[] {
+  const extraIgnore = <span class="cstat-no" title="statement not covered" >new Set(ignore);</span>
+  const results: string[] = <span class="cstat-no" title="statement not covered" >[];</span>
+  function <span class="fstat-no" title="function not covered" >walk(d</span>: string) {
+    let entries: string[];
+<span class="cstat-no" title="statement not covered" >    try { <span class="cstat-no" title="statement not covered" >entries = readdirSync(d); }</span> catch { <span class="cstat-no" title="statement not covered" >return; }</span></span>
+<span class="cstat-no" title="statement not covered" >    for (const entry of entries) {</span>
+<span class="cstat-no" title="statement not covered" >      if (IGNORE_DIRS.has(entry) || extraIgnore.has(entry)) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+      const <span class="cstat-no" title="statement not covered" >full = join(d, entry);</span>
+      let st;
+<span class="cstat-no" title="statement not covered" >      try { <span class="cstat-no" title="statement not covered" >st = statSync(full); }</span> catch { <span class="cstat-no" title="statement not covered" >continue; }</span></span>
+<span class="cstat-no" title="statement not covered" >      if (st.isDirectory()) { <span class="cstat-no" title="statement not covered" >walk(full); <span class="cstat-no" title="statement not covered" >c</span>ontinue; }</span></span>
+<span class="cstat-no" title="statement not covered" >      if (extname(entry).toLowerCase() === '.pdf') <span class="cstat-no" title="statement not covered" >results.push(full);</span></span>
+    }
+  }
+<span class="cstat-no" title="statement not covered" >  walk(dir);</span>
+<span class="cstat-no" title="statement not covered" >  return results;</span>
+}
+&nbsp;
+export const pdfParsePhase: PipelinePhase&lt;PdfParseOutput&gt; = <span class="cstat-no" title="statement not covered" >{</span>
+  name: 'pdf-parse',
+  deps: ['structure'],
+&nbsp;
+  async <span class="fstat-no" title="function not covered" >execute(c</span>tx: PipelineContext) {
+<span class="cstat-no" title="statement not covered" >    if (ctx.options.codeOnly) <span class="cstat-no" title="statement not covered" >return { sectionNodes: [], pdfFiles: 0 };</span></span>
+&nbsp;
+    // Dynamically load pdf-parse — skip silently if not installed.
+    // Use Function() to prevent TypeScript from resolving the optional module at build time.
+    let extractText: ((buf: Buffer) =&gt; Promise&lt;string&gt;) | null = <span class="cstat-no" title="statement not covered" >null;</span>
+<span class="cstat-no" title="statement not covered" >    try {</span>
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any
+      const mod = <span class="cstat-no" title="statement not covered" >await (new Function('return import("pdf-parse")')() as Promise&lt;any&gt;);</span>
+      const fn = <span class="cstat-no" title="statement not covered" >mod.default ?? mod;</span>
+<span class="cstat-no" title="statement not covered" >      extractText = <span class="fstat-no" title="function not covered" >async (<span class="cstat-no" title="statement not covered" >b</span>uf: Buffer) =&gt; (await fn(buf)).text as string;</span></span>
+    } catch {
+<span class="cstat-no" title="statement not covered" >      return { sectionNodes: [], pdfFiles: 0 };</span>
+    }
+&nbsp;
+    const pdfPaths = <span class="cstat-no" title="statement not covered" >walkPdfs(ctx.repoPath, ctx.repoPath, ctx.options.ignore);</span>
+<span class="cstat-no" title="statement not covered" >    if (pdfPaths.length === 0) <span class="cstat-no" title="statement not covered" >return { sectionNodes: [], pdfFiles: 0 };</span></span>
+&nbsp;
+    const sectionNodes: MonographNode[] = <span class="cstat-no" title="statement not covered" >[];</span>
+    const allEdges: MonographEdge[] = <span class="cstat-no" title="statement not covered" >[];</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    for (const absPath of pdfPaths) {</span>
+      const <span class="cstat-no" title="statement not covered" >rel = relative(ctx.repoPath, absPath);</span>
+      const <span class="cstat-no" title="statement not covered" >fileId = makeId(rel.replace(/\//g, '_'), 'file');</span>
+&nbsp;
+      let text: string;
+<span class="cstat-no" title="statement not covered" >      try {</span>
+        const <span class="cstat-no" title="statement not covered" >buf = readFileSync(absPath);</span>
+<span class="cstat-no" title="statement not covered" >        if (buf.length &gt; ctx.options.maxFileSizeBytes * 10) <span class="cstat-no" title="statement not covered" >continue; // 5 MB limit for PDFs</span></span>
+<span class="cstat-no" title="statement not covered" >        text = await extractText(buf);</span>
+      } catch { <span class="cstat-no" title="statement not covered" >continue; }</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      if (!text || text.trim().length === 0) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+      // Split into ~1500-char paragraphs with 150-char overlap (knowledge_graph style)
+      const CHUNK = <span class="cstat-no" title="statement not covered" >1500;</span>
+      const OVERLAP = <span class="cstat-no" title="statement not covered" >150;</span>
+      const chunks: Array&lt;{ content: string; startChar: number }&gt; = <span class="cstat-no" title="statement not covered" >[];</span>
+<span class="cstat-no" title="statement not covered" >      for (let pos = <span class="cstat-no" title="statement not covered" >0; p</span>os &lt; text.length; pos += CHUNK - OVERLAP) {</span>
+<span class="cstat-no" title="statement not covered" >        chunks.push({ content: text.slice(pos, pos + CHUNK), startChar: pos });</span>
+<span class="cstat-no" title="statement not covered" >        if (pos + CHUNK &gt;= text.length) <span class="cstat-no" title="statement not covered" >break;</span></span>
+      }
+&nbsp;
+      const <span class="cstat-no" title="statement not covered" >docTitle = basename(rel).replace(/\.pdf$/i, '');</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      for (let i = <span class="cstat-no" title="statement not covered" >0; i</span> &lt; chunks.length; i++) {</span>
+        const { content, startChar } = <span class="cstat-no" title="statement not covered" >chunks[i];</span>
+        const title = <span class="cstat-no" title="statement not covered" >`${docTitle} §${i + 1}`;</span>
+        const <span class="cstat-no" title="statement not covered" >sectionId = makeId('section', fileId, String(i));</span>
+&nbsp;
+        const node: MonographNode = <span class="cstat-no" title="statement not covered" >{</span>
+          id: sectionId, label: 'Section',
+          name: title, normLabel: toNormLabel(title),
+          filePath: rel, startLine: startChar, endLine: startChar + content.length,
+          isExported: false,
+          properties: { level: 1, content: content.slice(0, 2000), source: 'pdf', chunk: i },
+        };
+<span class="cstat-no" title="statement not covered" >        sectionNodes.push(node);</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >        allEdges.push({</span>
+          id: makeId(fileId, sectionId, 'defines'),
+          sourceId: fileId, targetId: sectionId,
+          relation: 'DEFINES', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
+        });
+      }
+    }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (sectionNodes.length &gt; 0) {</span>
+      // File nodes are not persisted by structure/parse phases for non-code files —
+      // insert them here before edges to satisfy the FK constraint.
+      const seenFileIds = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;();</span>
+      const fileNodes: MonographNode[] = <span class="cstat-no" title="statement not covered" >[];</span>
+<span class="cstat-no" title="statement not covered" >      for (const edge of allEdges) {</span>
+<span class="cstat-no" title="statement not covered" >        if (!seenFileIds.has(edge.sourceId)) {</span>
+<span class="cstat-no" title="statement not covered" >          seenFileIds.add(edge.sourceId);</span>
+          const relPath = <span class="cstat-no" title="statement not covered" >sectionNodes.<span class="fstat-no" title="function not covered" >find(n</span> =&gt; <span class="cstat-no" title="statement not covered" >n.id === edge.targetId)</span>?.filePath ?? '';</span>
+<span class="cstat-no" title="statement not covered" >          fileNodes.push({</span>
+            id: edge.sourceId, label: 'File',
+            name: basename(relPath), normLabel: toNormLabel(basename(relPath)),
+            filePath: relPath, isExported: false,
+          });
+        }
+      }
+<span class="cstat-no" title="statement not covered" >      insertNodes(ctx.db, [...fileNodes, ...sectionNodes]);</span>
+<span class="cstat-no" title="statement not covered" >      insertEdges(ctx.db, allEdges);</span>
+    }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    ctx.onProgress?.({ phase: 'pdf-parse', message: `Parsed ${pdfPaths.length} PDF files → ${sectionNodes.length} chunks` });</span>
+<span class="cstat-no" title="statement not covered" >    return { sectionNodes, pdfFiles: pdfPaths.length };</span>
+  },
+};
+&nbsp;</pre></td></tr></table></pre>
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+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
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