npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import type { PipelinePhase, PipelineContext } from '../types.js';
+import type { MonographNode, MonographEdge } from '../../types.js';
+import { makeId, toNormLabel, CONFIDENCE_SCORE } from '../../types.js';
+import { insertNodes } from '../../storage/node-store.js';
+import { insertEdges } from '../../storage/edge-store.js';
+import type { EdgeRelation } from '../../types.js';
+&nbsp;
+export interface LlmExtractOutput {
+  triplesExtracted: number;
+  sectionsProcessed: number;
+}
+&nbsp;
+const ALLOWED_RELATIONS = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;([</span>
+  'DESCRIBES', 'CAUSES', 'CONTRASTS_WITH', 'PART_OF', 'RELATED_TO', 'USES',
+]);
+&nbsp;
+const SYSTEM_PROMPT = <span class="cstat-no" title="statement not covered" >`You extract knowledge graph relationships from technical documentation chunks.</span>
+&nbsp;
+Return ONLY a JSON array of relationships, each with:
+- "node_1": first concept (short, specific, lowercase, max 4 words)
+- "node_2": second concept (short, specific, lowercase, max 4 words)
+- "relation": one of DESCRIBES, CAUSES, CONTRASTS_WITH, PART_OF, RELATED_TO, USES
+- "edge": brief 3-6 word phrase describing the relationship
+&nbsp;
+Rules:
+- Concepts must be specific technical terms (not "thing", "item", "way", "use")
+- Maximum 8 relationships per chunk
+- Skip if text is too short, navigational, or has no meaningful concepts
+- Return [] for non-substantive content
+&nbsp;
+Return only valid JSON array, no explanation.`;
+&nbsp;
+interface Triple {
+  node_1: string;
+  node_2: string;
+  relation: string;
+  edge: string;
+}
+&nbsp;
+async function <span class="fstat-no" title="function not covered" >callClaude(c</span>ontent: string): Promise&lt;Triple[] | null&gt; {
+<span class="cstat-no" title="statement not covered" >  try {</span>
+    const { claudeCliCall } = <span class="cstat-no" title="statement not covered" >await import('../../claude-cli.js');</span>
+    const prompt = <span class="cstat-no" title="statement not covered" >`${SYSTEM_PROMPT}\n\n${content.slice(0, 1500)}`;</span>
+    const text = <span class="cstat-no" title="statement not covered" >await claudeCliCall(prompt, 30_000);</span>
+    const parsed = <span class="cstat-no" title="statement not covered" >JSON.parse(text.match(/\[[\s\S]*\]/)?.[0] ?? '[]');</span>
+<span class="cstat-no" title="statement not covered" >    return Array.isArray(parsed) ? parsed as Triple[] : null;</span>
+  } catch {
+<span class="cstat-no" title="statement not covered" >    return null;</span>
+  }
+}
+&nbsp;
+export const llmExtractPhase: PipelinePhase&lt;LlmExtractOutput&gt; = <span class="cstat-no" title="statement not covered" >{</span>
+  name: 'llm-extract',
+  deps: ['docs-parse', 'pdf-parse'],
+&nbsp;
+  async <span class="fstat-no" title="function not covered" >execute(c</span>tx: PipelineContext) {
+    const maxSections = <span class="cstat-no" title="statement not covered" >ctx.options.llmMaxSections;</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (maxSections &lt;= 0 || ctx.options.codeOnly) {</span>
+<span class="cstat-no" title="statement not covered" >      return { triplesExtracted: 0, sectionsProcessed: 0 };</span>
+    }
+&nbsp;
+    const { isClaudeCliAvailable } = <span class="cstat-no" title="statement not covered" >await import('../../claude-cli.js');</span>
+<span class="cstat-no" title="statement not covered" >    if (!isClaudeCliAvailable()) {</span>
+<span class="cstat-no" title="statement not covered" >      return { triplesExtracted: 0, sectionsProcessed: 0 };</span>
+    }
+&nbsp;
+    // Fetch Section nodes with non-trivial content
+    const sections = <span class="cstat-no" title="statement not covered" >ctx.db</span>
+      .prepare(`
+        SELECT id, name, properties FROM nodes
+        WHERE label = 'Section'
+        AND properties IS NOT NULL
+        AND json_extract(properties, '$.content') IS NOT NULL
+        AND length(json_extract(properties, '$.content')) &gt; 200
+        LIMIT ?
+      `)
+      .all(maxSections) as { id: string; name: string; properties: string }[];
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (sections.length === 0) <span class="cstat-no" title="statement not covered" >return { triplesExtracted: 0, sectionsProcessed: 0 };</span></span>
+&nbsp;
+    const conceptNodes = <span class="cstat-no" title="statement not covered" >new Map&lt;string, MonographNode&gt;();</span>
+    const allEdges: MonographEdge[] = <span class="cstat-no" title="statement not covered" >[];</span>
+    const seenEdges = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;();</span>
+    let sectionsProcessed = <span class="cstat-no" title="statement not covered" >0;</span>
+&nbsp;
+    // Fetch existing concept IDs to avoid duplicate node creation
+    const existingConcepts = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;(</span>
+      (ctx.db.prepare(`SELECT id FROM nodes WHERE label = 'Concept'`).all() as { id: string }[])
+        .<span class="fstat-no" title="function not covered" >map(r</span> =&gt; <span class="cstat-no" title="statement not covered" >r.id)</span>,
+    );
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    for (const section of sections) {</span>
+      const props = <span class="cstat-no" title="statement not covered" >JSON.parse(section.properties) as Record&lt;string, unknown&gt;;</span>
+      const content = <span class="cstat-no" title="statement not covered" >props.content as string | undefined;</span>
+<span class="cstat-no" title="statement not covered" >      if (!content) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+      const triples = <span class="cstat-no" title="statement not covered" >await callClaude(</span>
+        `Section: "${section.name}"\n\n${content}`,
+      );
+<span class="cstat-no" title="statement not covered" >      if (!triples || triples.length === 0) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      sectionsProcessed++;</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      for (const triple of triples) {</span>
+        const { node_1, node_2, relation, edge } = <span class="cstat-no" title="statement not covered" >triple;</span>
+<span class="cstat-no" title="statement not covered" >        if (!node_1 || !node_2 || !relation) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+        const rel = <span class="cstat-no" title="statement not covered" >relation.toUpperCase();</span>
+<span class="cstat-no" title="statement not covered" >        if (!ALLOWED_RELATIONS.has(rel)) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+        // Normalize concept names (lowercase, collapse spaces)
+        const n1 = <span class="cstat-no" title="statement not covered" >node_1.toLowerCase().trim().replace(/\s+/g, '_').replace(/[^a-z0-9_]/g, '');</span>
+        const n2 = <span class="cstat-no" title="statement not covered" >node_2.toLowerCase().trim().replace(/\s+/g, '_').replace(/[^a-z0-9_]/g, '');</span>
+<span class="cstat-no" title="statement not covered" >        if (!n1 || !n2 || n1 === n2) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+&nbsp;
+        const <span class="cstat-no" title="statement not covered" >c1Id = makeId('concept', n1);</span>
+        const <span class="cstat-no" title="statement not covered" >c2Id = makeId('concept', n2);</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >        for (const [cId, cName] of [[c1Id, n1], [c2Id, n2]] as [string, string][]) {</span>
+<span class="cstat-no" title="statement not covered" >          if (!conceptNodes.has(cId) &amp;&amp; !existingConcepts.has(cId)) {</span>
+<span class="cstat-no" title="statement not covered" >            conceptNodes.set(cId, {</span>
+              id: cId, label: 'Concept',
+              name: cName.replace(/_/g, ' '), normLabel: toNormLabel(cName),
+              isExported: false,
+              properties: { source: 'llm', edgeLabel: edge },
+            });
+          }
+        }
+&nbsp;
+        // Section → concept_1 (DESCRIBES)
+        const <span class="cstat-no" title="statement not covered" >e1Id = makeId(section.id, c1Id, 'describes');</span>
+<span class="cstat-no" title="statement not covered" >        if (!seenEdges.has(e1Id)) {</span>
+<span class="cstat-no" title="statement not covered" >          seenEdges.add(e1Id);</span>
+<span class="cstat-no" title="statement not covered" >          allEdges.push({</span>
+            id: e1Id, sourceId: section.id, targetId: c1Id,
+            relation: 'DESCRIBES', confidence: 'INFERRED', confidenceScore: CONFIDENCE_SCORE.INFERRED,
+          });
+        }
+&nbsp;
+        // concept_1 → concept_2 (semantic relation)
+        const <span class="cstat-no" title="statement not covered" >e2Id = makeId(c1Id, c2Id, rel.toLowerCase());</span>
+<span class="cstat-no" title="statement not covered" >        if (!seenEdges.has(e2Id)) {</span>
+<span class="cstat-no" title="statement not covered" >          seenEdges.add(e2Id);</span>
+<span class="cstat-no" title="statement not covered" >          allEdges.push({</span>
+            id: e2Id, sourceId: c1Id, targetId: c2Id,
+            relation: rel as EdgeRelation, confidence: 'INFERRED', confidenceScore: CONFIDENCE_SCORE.INFERRED,
+            weight: 1,
+          });
+        }
+      }
+    }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (conceptNodes.size &gt; <span class="cstat-no" title="statement not covered" >0) insertNodes(ctx.db, [...conceptNodes.values()]);</span></span>
+<span class="cstat-no" title="statement not covered" >    if (allEdges.length &gt; <span class="cstat-no" title="statement not covered" >0) insertEdges(ctx.db, allEdges);</span></span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    ctx.onProgress?.({</span>
+      phase: 'llm-extract',
+      message: `LLM processed ${sectionsProcessed} sections → ${allEdges.length} semantic edges, ${conceptNodes.size} new concepts`,
+    });
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    return { triplesExtracted: allEdges.length, sectionsProcessed };</span>
+  },
+};
+&nbsp;</pre></td></tr></table></pre>
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+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
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+            window.onload = function () {
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