npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import { createInterface } from 'readline';
+import type { MonographDb } from '../storage/db.js';
+&nbsp;
+// Minimal LSP stdio server exposing monograph diagnostics
+// Start with: node server.js --db /path/to/monograph.db
+&nbsp;
+export interface LspDiagnostic {
+  uri: string;
+  range: { start: { line: number; character: number }; end: { line: number; character: number } };
+  severity: 1 | 2 | 3 | 4;   // Error=1, Warning=2, Information=3, Hint=4
+  source: 'monograph';
+  message: string;
+  code?: string;
+}
+&nbsp;
+const FILE_RANGE = <span class="cstat-no" title="statement not covered" >{</span>
+  start: { line: 0, character: 0 },
+  end: { line: 0, character: 0 },
+};
+&nbsp;
+export function <span class="fstat-no" title="function not covered" >buildDiagnosticsFromDb(d</span>b: MonographDb, repoRoot: string): Map&lt;string, LspDiagnostic[]&gt; {
+  const result = <span class="cstat-no" title="statement not covered" >new Map&lt;string, LspDiagnostic[]&gt;();</span>
+&nbsp;
+  const normRoot = <span class="cstat-no" title="statement not covered" >repoRoot.replace(/\/$/, '');</span>
+&nbsp;
+  function <span class="fstat-no" title="function not covered" >uriForPath(f</span>ilePath: string): string {
+<span class="cstat-no" title="statement not covered" >    if (filePath.startsWith('/')) {</span>
+<span class="cstat-no" title="statement not covered" >      return `file://${filePath}`;</span>
+    }
+<span class="cstat-no" title="statement not covered" >    return `file:///${normRoot}/${filePath}`.replace(/\/+/g, '/').replace(/^file:\/\/\//, 'file:///');</span>
+  }
+&nbsp;
+  function <span class="fstat-no" title="function not covered" >addDiag(f</span>ilePath: string, diag: LspDiagnostic): void {
+    const uri = <span class="cstat-no" title="statement not covered" >uriForPath(filePath);</span>
+    const list = <span class="cstat-no" title="statement not covered" >result.get(uri) ?? [];</span>
+<span class="cstat-no" title="statement not covered" >    list.push(diag);</span>
+<span class="cstat-no" title="statement not covered" >    result.set(uri, list);</span>
+  }
+&nbsp;
+  // Unreachable files → Warning
+<span class="cstat-no" title="statement not covered" >  try {</span>
+    const unreachableFiles = <span class="cstat-no" title="statement not covered" >db.prepare(</span>
+      `SELECT file_path FROM nodes
+       WHERE label = 'File'
+         AND json_extract(properties, '$.reachabilityRole') = 'unreachable'`
+    ).all() as { file_path: string }[];
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    for (const row of unreachableFiles) {</span>
+<span class="cstat-no" title="statement not covered" >      if (!row.file_path) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+      const uri = <span class="cstat-no" title="statement not covered" >uriForPath(row.file_path);</span>
+<span class="cstat-no" title="statement not covered" >      addDiag(row.file_path, {</span>
+        uri,
+        range: FILE_RANGE,
+        severity: 2,
+        source: 'monograph',
+        message: 'Unreachable file: not imported by any runtime entry point',
+        code: 'unreachable-file',
+      });
+    }
+  } catch {
+    // Table or column not available; skip
+  }
+&nbsp;
+  // God nodes — query node_properties for the threshold used during build
+<span class="cstat-no" title="statement not covered" >  try {</span>
+    // Use p95 fan-in as the threshold (consistent with god-nodes pipeline phase)
+    const GOD_NODE_DEGREE_THRESHOLD = <span class="cstat-no" title="statement not covered" >10; // fallback if we can't compute from DB</span>
+&nbsp;
+    const fanInRows = <span class="cstat-no" title="statement not covered" >db.prepare(</span>
+      `SELECT target_id, COUNT(*) as c FROM edges GROUP BY target_id`
+    ).all() as { target_id: string; c: number }[];
+&nbsp;
+    const sorted = <span class="cstat-no" title="statement not covered" >fanInRows.<span class="fstat-no" title="function not covered" >map(r</span> =&gt; <span class="cstat-no" title="statement not covered" >r.c)</span>.<span class="fstat-no" title="function not covered" >sort((a</span>, b) =&gt; <span class="cstat-no" title="statement not covered" >a - b)</span>;</span>
+    let threshold = <span class="cstat-no" title="statement not covered" >GOD_NODE_DEGREE_THRESHOLD;</span>
+<span class="cstat-no" title="statement not covered" >    if (sorted.length &gt; 0) {</span>
+      const idx = <span class="cstat-no" title="statement not covered" >Math.min(Math.floor(0.95 * sorted.length), sorted.length - 1);</span>
+<span class="cstat-no" title="statement not covered" >      threshold = sorted[idx];</span>
+    }
+&nbsp;
+    const fanInByNode = <span class="cstat-no" title="statement not covered" >new Map&lt;string, number&gt;();</span>
+<span class="cstat-no" title="statement not covered" >    for (const row of fanInRows) {</span>
+<span class="cstat-no" title="statement not covered" >      fanInByNode.set(row.target_id, row.c);</span>
+    }
+&nbsp;
+    const godNodeRows = <span class="cstat-no" title="statement not covered" >db.prepare(</span>
+      `SELECT n.id, n.file_path, COUNT(e.source_id) as fan_in
+       FROM nodes n
+       JOIN edges e ON e.target_id = n.id
+       WHERE n.label = 'File'
+       GROUP BY n.id
+       HAVING COUNT(e.source_id) &gt; ?`
+    ).all(threshold) as { id: string; file_path: string; fan_in: number }[];
+&nbsp;
+    const totalNodes = (<span class="cstat-no" title="statement not covered" >db.prepare('SELECT COUNT(*) as n FROM nodes').get() as { n: number }).n;</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    for (const row of godNodeRows) {</span>
+<span class="cstat-no" title="statement not covered" >      if (!row.file_path) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+      const pct = <span class="cstat-no" title="statement not covered" >totalNodes &gt; 0 ? Math.round((row.fan_in / totalNodes) * 100) : 0;</span>
+      const uri = <span class="cstat-no" title="statement not covered" >uriForPath(row.file_path);</span>
+<span class="cstat-no" title="statement not covered" >      addDiag(row.file_path, {</span>
+        uri,
+        range: FILE_RANGE,
+        severity: 2,
+        source: 'monograph',
+        message: `God node: ${row.fan_in} incoming dependencies (p${pct})`,
+        code: 'god-node',
+      });
+    }
+  } catch {
+    // Skip if edges table not available
+  }
+&nbsp;
+  // STRUCTURALLY_SIMILAR edges → Information
+<span class="cstat-no" title="statement not covered" >  try {</span>
+    const similarEdges = <span class="cstat-no" title="statement not covered" >db.prepare(</span>
+      `SELECT e.source_id, e.target_id, e.confidence_score,
+              ns.file_path as source_path, nt.file_path as target_path
+       FROM edges e
+       JOIN nodes ns ON ns.id = e.source_id
+       JOIN nodes nt ON nt.id = e.target_id
+       WHERE e.relation = 'STRUCTURALLY_SIMILAR'`
+    ).all() as {
+      source_id: string;
+      target_id: string;
+      confidence_score: number;
+      source_path: string;
+      target_path: string;
+    }[];
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    for (const row of similarEdges) {</span>
+<span class="cstat-no" title="statement not covered" >      if (!row.source_path || !row.target_path) <span class="cstat-no" title="statement not covered" >continue;</span></span>
+      const score = <span class="cstat-no" title="statement not covered" >Math.round((row.confidence_score ?? 0) * 100);</span>
+      const uri = <span class="cstat-no" title="statement not covered" >uriForPath(row.source_path);</span>
+<span class="cstat-no" title="statement not covered" >      addDiag(row.source_path, {</span>
+        uri,
+        range: FILE_RANGE,
+        severity: 3,
+        source: 'monograph',
+        message: `Similar to ${row.target_path} (similarity: ${score}%)`,
+        code: 'structurally-similar',
+      });
+    }
+  } catch {
+    // Skip if not available
+  }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >  return result;</span>
+}
+&nbsp;
+// LSP JSON-RPC 2.0 over stdio
+function <span class="fstat-no" title="function not covered" >writeMessage(m</span>sg: unknown): void {
+  const json = <span class="cstat-no" title="statement not covered" >JSON.stringify(msg);</span>
+  const header = <span class="cstat-no" title="statement not covered" >`Content-Length: ${Buffer.byteLength(json, 'utf-8')}\r\n\r\n`;</span>
+<span class="cstat-no" title="statement not covered" >  process.stdout.write(header + json);</span>
+}
+&nbsp;
+function <span class="fstat-no" title="function not covered" >sendResponse(i</span>d: number | string | null, result: unknown): void {
+<span class="cstat-no" title="statement not covered" >  writeMessage({ jsonrpc: '2.0', id, result });</span>
+}
+&nbsp;
+function <span class="fstat-no" title="function not covered" >sendNotification(m</span>ethod: string, params: unknown): void {
+<span class="cstat-no" title="statement not covered" >  writeMessage({ jsonrpc: '2.0', method, params });</span>
+}
+&nbsp;
+function <span class="fstat-no" title="function not covered" >publishDiagnostics(d</span>iagnosticsMap: Map&lt;string, LspDiagnostic[]&gt;): void {
+<span class="cstat-no" title="statement not covered" >  for (const [uri, diagnostics] of diagnosticsMap) {</span>
+<span class="cstat-no" title="statement not covered" >    sendNotification('textDocument/publishDiagnostics', { uri, diagnostics });</span>
+  }
+}
+&nbsp;
+export function <span class="fstat-no" title="function not covered" >startLspServer(d</span>b: MonographDb, repoRoot: string): void {
+  // Build diagnostics once on startup
+  const diagnosticsMap = <span class="cstat-no" title="statement not covered" >buildDiagnosticsFromDb(db, repoRoot);</span>
+&nbsp;
+  // LSP header framing: read Content-Length header, then body
+  let buffer = <span class="cstat-no" title="statement not covered" >Buffer.alloc(0);</span>
+  let expectedLength: number | null = <span class="cstat-no" title="statement not covered" >null;</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >  process.stdin.on(<span class="fstat-no" title="function not covered" >'data', (c</span>hunk: Buffer) =&gt; {</span>
+<span class="cstat-no" title="statement not covered" >    buffer = Buffer.concat([buffer, chunk]);</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    while (true) {</span>
+<span class="cstat-no" title="statement not covered" >      if (expectedLength === null) {</span>
+        // Try to parse headers
+        const headerEnd = <span class="cstat-no" title="statement not covered" >buffer.indexOf('\r\n\r\n');</span>
+<span class="cstat-no" title="statement not covered" >        if (headerEnd === -1) <span class="cstat-no" title="statement not covered" >break;</span></span>
+&nbsp;
+        const headerStr = <span class="cstat-no" title="statement not covered" >buffer.slice(0, headerEnd).toString('utf-8');</span>
+        const contentLengthMatch = <span class="cstat-no" title="statement not covered" >headerStr.match(/Content-Length:\s*(\d+)/i);</span>
+<span class="cstat-no" title="statement not covered" >        if (!contentLengthMatch) {</span>
+          // Malformed; skip
+<span class="cstat-no" title="statement not covered" >          buffer = buffer.slice(headerEnd + 4);</span>
+<span class="cstat-no" title="statement not covered" >          break;</span>
+        }
+<span class="cstat-no" title="statement not covered" >        expectedLength = parseInt(contentLengthMatch[1], 10);</span>
+<span class="cstat-no" title="statement not covered" >        buffer = buffer.slice(headerEnd + 4);</span>
+      }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      if (buffer.length &lt; expectedLength) <span class="cstat-no" title="statement not covered" >break;</span></span>
+&nbsp;
+      const body = <span class="cstat-no" title="statement not covered" >buffer.slice(0, expectedLength).toString('utf-8');</span>
+<span class="cstat-no" title="statement not covered" >      buffer = buffer.slice(expectedLength);</span>
+<span class="cstat-no" title="statement not covered" >      expectedLength = null;</span>
+&nbsp;
+      let msg: { jsonrpc: string; id?: number | string; method?: string; params?: unknown };
+<span class="cstat-no" title="statement not covered" >      try {</span>
+<span class="cstat-no" title="statement not covered" >        msg = JSON.parse(body);</span>
+      } catch {
+<span class="cstat-no" title="statement not covered" >        continue;</span>
+      }
+&nbsp;
+      const { id, method } = <span class="cstat-no" title="statement not covered" >msg;</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >      switch (method) {</span>
+        case 'initialize':
+<span class="cstat-no" title="statement not covered" >          sendResponse(id ?? null, {</span>
+            capabilities: {
+              textDocumentSync: 1,
+              diagnosticProvider: {},
+            },
+          });
+<span class="cstat-no" title="statement not covered" >          break;</span>
+&nbsp;
+        case 'initialized':
+          // Push all diagnostics on connection established
+<span class="cstat-no" title="statement not covered" >          publishDiagnostics(diagnosticsMap);</span>
+<span class="cstat-no" title="statement not covered" >          break;</span>
+&nbsp;
+        case 'shutdown':
+<span class="cstat-no" title="statement not covered" >          sendResponse(id ?? null, null);</span>
+<span class="cstat-no" title="statement not covered" >          break;</span>
+&nbsp;
+        case 'exit':
+<span class="cstat-no" title="statement not covered" >          process.exit(0);</span>
+<span class="cstat-no" title="statement not covered" >          break;</span>
+&nbsp;
+        default:
+          // Unhandled request — send method not found
+<span class="cstat-no" title="statement not covered" >          if (id !== undefined &amp;&amp; id !== null) {</span>
+<span class="cstat-no" title="statement not covered" >            writeMessage({</span>
+              jsonrpc: '2.0',
+              id,
+              error: { code: -32601, message: 'Method not found' },
+            });
+          }
+<span class="cstat-no" title="statement not covered" >          break;</span>
+      }
+    }
+  });
+&nbsp;
+<span class="cstat-no" title="statement not covered" >  process.stdin.on(<span class="fstat-no" title="function not covered" >'end', () =&gt; {</span></span>
+<span class="cstat-no" title="statement not covered" >    process.exit(0);</span>
+  });
+}
+&nbsp;</pre></td></tr></table></pre>
+                <div class='push'></div><!-- for sticky footer -->
+            </div><!-- /wrapper -->
+            <div class='footer quiet pad2 space-top1 center small'>
+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
+        <script src="../../prettify.js"></script>
+        <script>
+            window.onload = function () {
+                prettyPrint();
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