npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import Database from 'better-sqlite3';
+import type { MonographDb } from '../storage/db.js';
+&nbsp;
+export interface PageRankOptions {
+  /** Damping factor (probability of following an edge). Default: 0.85 */
+  dampingFactor?: number;
+  /** Maximum number of power-iteration steps. Default: 100 */
+  maxIterations?: number;
+  /** Convergence threshold (L1 norm delta). Default: 1e-6 */
+  tolerance?: number;
+}
+&nbsp;
+// ---------------------------------------------------------------------------
+// Per-DB statement cache — avoids recompiling SQL on every pageRank() call.
+// ---------------------------------------------------------------------------
+interface StmtCache {
+  selectNodes: Database.Statement;
+  selectEdges: Database.Statement;
+}
+&nbsp;
+const _stmtCache = new Map&lt;string, StmtCache&gt;();
+&nbsp;
+function getStmts(db: MonographDb): StmtCache {
+  const key = (db as unknown as { name: string }).name ?? <span class="branch-1 cbranch-no" title="branch not covered" >'__default__';</span>
+  let cache = _stmtCache.get(key);
+  <span class="missing-if-branch" title="else path not taken" >E</span>if (!cache) {
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (_stmtCache.size &gt;= MAX_STMT_CACHE) {
+      const oldest = <span class="cstat-no" title="statement not covered" >_stmtCache.keys().next().value!;</span>
+<span class="cstat-no" title="statement not covered" >      _stmtCache.delete(oldest);</span>
+    }
+    cache = {
+      selectNodes: db.prepare('SELECT id FROM nodes'),
+      selectEdges: db.prepare('SELECT source_id, target_id FROM edges'),
+    };
+    _stmtCache.set(key, cache);
+  }
+  return cache;
+}
+&nbsp;
+// ---------------------------------------------------------------------------
+// Result cache — avoids re-running power iteration when the graph hasn't
+// changed. Keyed by (dbName, nodeCount, edgeCount) with a 5-second TTL.
+// ---------------------------------------------------------------------------
+const PAGERANK_CACHE_TTL_MS = 5_000;
+const MAX_RESULT_CACHE = 50;
+const MAX_STMT_CACHE = 20;
+&nbsp;
+interface PageRankCacheEntry {
+  result: Map&lt;string, number&gt;;
+  expiresAt: number;
+}
+&nbsp;
+const _resultCache = new Map&lt;string, PageRankCacheEntry&gt;();
+&nbsp;
+function resultCacheKey(db: MonographDb, nodeCount: number, edgeCount: number): string {
+  const name = (db as unknown as { name: string }).name ?? <span class="branch-1 cbranch-no" title="branch not covered" >'__default__';</span>
+  return `${name}:${nodeCount}:${edgeCount}`;
+}
+&nbsp;
+/**
+ * Evict cached statements and results for a given DB instance (call after writes).
+ */
+export function <span class="fstat-no" title="function not covered" >invalidatePageRankCache(d</span>b: MonographDb): void {
+  const key = (<span class="cstat-no" title="statement not covered" >db as unknown as { name: string }).name ?? '__default__';</span>
+<span class="cstat-no" title="statement not covered" >  _stmtCache.delete(key);</span>
+  // Purge all result-cache entries for this DB (they have the name as prefix)
+<span class="cstat-no" title="statement not covered" >  for (const k of _resultCache.keys()) {</span>
+<span class="cstat-no" title="statement not covered" >    if (k.startsWith(`${key}:`)) <span class="cstat-no" title="statement not covered" >_resultCache.delete(k);</span></span>
+  }
+}
+&nbsp;
+/**
+ * Compute PageRank scores for all nodes using power iteration.
+ *
+ * Each node's score is initialized to 1/N (so scores sum to 1).
+ * After convergence the scores still sum to ~1 (standard normalized PageRank).
+ * Dangling nodes (out-degree 0) distribute their rank equally to all nodes.
+ *
+ * Results are cached for 5 seconds when the graph's node+edge counts are
+ * unchanged, making repeated calls (e.g. during context preloading) free.
+ *
+ * @param db - The MonographDb instance
+ * @param options - Optional tuning parameters
+ * @returns Map of nodeId → PageRank score
+ */
+export function pageRank(db: MonographDb, options: PageRankOptions = {}): Map&lt;string, number&gt; {
+  const { dampingFactor = 0.85, maxIterations = 100, tolerance = 1e-6 } = options;
+&nbsp;
+  const stmts = getStmts(db);
+  const nodeRows = stmts.selectNodes.all() as { id: string }[];
+  const edgeRows = stmts.selectEdges.all() as {
+    source_id: string;
+    target_id: string;
+  }[];
+&nbsp;
+  if (nodeRows.length === 0) return new Map();
+&nbsp;
+  // Check result cache before running power iteration
+  const cacheKey = resultCacheKey(db, nodeRows.length, edgeRows.length);
+  const now = Date.now();
+  const cached = _resultCache.get(cacheKey);
+  <span class="missing-if-branch" title="if path not taken" >I</span>if (cached &amp;&amp; <span class="branch-1 cbranch-no" title="branch not covered" >now &lt; cached.expiresAt) <span class="cstat-no" title="statement not covered" >r</span>eturn cached.result;</span>
+&nbsp;
+  const nodes = nodeRows.map(r =&gt; r.id);
+  const n = nodes.length;
+  const nodeIndex = new Map&lt;string, number&gt;();
+  nodes.forEach((id, i) =&gt; nodeIndex.set(id, i));
+&nbsp;
+  // Build adjacency: outEdges[i] = list of target indices
+  const outEdges: number[][] = nodes.map(() =&gt; []);
+  const inEdges: number[][] = nodes.map(() =&gt; []);
+&nbsp;
+  for (const { source_id: src, target_id: tgt } of edgeRows) {
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (src === tgt) <span class="cstat-no" title="statement not covered" >continue;</span>
+    const si = nodeIndex.get(src);
+    const ti = nodeIndex.get(tgt);
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (si === undefined || ti === undefined) <span class="cstat-no" title="statement not covered" >continue;</span>
+    outEdges[si].push(ti);
+    inEdges[ti].push(si);
+  }
+&nbsp;
+  // Power iteration — initialize to uniform 1/N so scores sum to 1
+  let scores = new Float64Array(n).fill(1 / n);
+  const dangling1OverN = (1 - dampingFactor) / n;
+&nbsp;
+  for (let iter = 0; iter &lt; maxIterations; iter++) {
+    const newScores = new Float64Array(n);
+&nbsp;
+    // Collect dangling node contribution
+    let danglingSum = 0;
+    for (let i = 0; i &lt; n; i++) {
+      if (outEdges[i].length === 0) danglingSum += scores[i];
+    }
+    const danglingContrib = (dampingFactor * danglingSum) / n;
+&nbsp;
+    for (let i = 0; i &lt; n; i++) {
+      let incoming = 0;
+      for (const j of inEdges[i]) {
+        incoming += scores[j] / outEdges[j].length;
+      }
+      newScores[i] = dangling1OverN + dampingFactor * incoming + danglingContrib;
+    }
+&nbsp;
+    // Check convergence
+    let delta = 0;
+    for (let i = 0; i &lt; n; i++) {
+      delta += Math.abs(newScores[i] - scores[i]);
+    }
+    scores = newScores;
+    if (delta &lt; tolerance) break;
+  }
+&nbsp;
+  const result = new Map&lt;string, number&gt;();
+  for (let i = 0; i &lt; n; i++) {
+    result.set(nodes[i], scores[i]);
+  }
+&nbsp;
+  <span class="missing-if-branch" title="if path not taken" >I</span>if (_resultCache.size &gt;= MAX_RESULT_CACHE) {
+    const oldest = <span class="cstat-no" title="statement not covered" >_resultCache.keys().next().value!;</span>
+<span class="cstat-no" title="statement not covered" >    _resultCache.delete(oldest);</span>
+  }
+  _resultCache.set(cacheKey, { result, expiresAt: now + PAGERANK_CACHE_TTL_MS });
+&nbsp;
+  return result;
+}
+&nbsp;</pre></td></tr></table></pre>
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+                at 2026-07-25T08:38:16.548Z
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