npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import type { MonographDb } from '../storage/db.js';
+&nbsp;
+/** Build adjacency maps from DB rows (shared by both exports). */
+function buildAdjacency(
+  nodes: string[],
+  edgeRows: { source_id: string; target_id: string }[],
+): {
+  adj: Map&lt;string, string[]&gt;;
+  radj: Map&lt;string, string[]&gt;;
+  selfLoops: Set&lt;string&gt;;
+} {
+  const nodeSet = new Set(nodes);
+  const adj = new Map&lt;string, string[]&gt;();
+  const radj = new Map&lt;string, string[]&gt;();
+  for (const n of nodes) {
+    adj.set(n, []);
+    radj.set(n, []);
+  }
+  const selfLoops = new Set&lt;string&gt;();
+  for (const { source_id: src, target_id: tgt } of edgeRows) {
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (!nodeSet.has(src) || !nodeSet.has(tgt)) <span class="cstat-no" title="statement not covered" >continue;</span>
+    if (src === tgt) {
+      selfLoops.add(src);
+      continue;
+    }
+    adj.get(src)!.push(tgt);
+    radj.get(tgt)!.push(src);
+  }
+  return { adj, radj, selfLoops };
+}
+&nbsp;
+/** Iterative DFS pass 1: populate finish order (replaces recursive dfs1). */
+function iterativeDfs1(
+  roots: string[],
+  adj: Map&lt;string, string[]&gt;,
+  visited: Set&lt;string&gt;,
+  finishOrder: string[],
+): void {
+  for (const root of roots) {
+    if (visited.has(root)) continue;
+    // Stack entries: [node, neighborIndex]
+    const stack: [string, number][] = [[root, 0]];
+    visited.add(root);
+    while (stack.length &gt; 0) {
+      const frame = stack[stack.length - 1];
+      const [node, idx] = frame;
+      const neighbors = adj.get(node) ?? <span class="branch-1 cbranch-no" title="branch not covered" >[];</span>
+      if (idx &lt; neighbors.length) {
+        frame[1]++;
+        const neighbor = neighbors[idx];
+        if (!visited.has(neighbor)) {
+          visited.add(neighbor);
+          stack.push([neighbor, 0]);
+        }
+      } else {
+        stack.pop();
+        finishOrder.push(node);
+      }
+    }
+  }
+}
+&nbsp;
+/** Iterative DFS pass 2: collect SCC component (replaces recursive dfs2). */
+function iterativeDfs2(
+  root: string,
+  radj: Map&lt;string, string[]&gt;,
+  assigned: Set&lt;string&gt;,
+  component: string[],
+): void {
+  const stack: string[] = [root];
+  assigned.add(root);
+  while (stack.length &gt; 0) {
+    const node = stack.pop()!;
+    component.push(node);
+    for (const neighbor of radj.get(node) ?? <span class="branch-1 cbranch-no" title="branch not covered" >[]) {</span>
+      if (!assigned.has(neighbor)) {
+        assigned.add(neighbor);
+        stack.push(neighbor);
+      }
+    }
+  }
+}
+&nbsp;
+/**
+ * Fetch nodes and edges once and return raw rows (shared helper).
+ */
+function fetchGraphRows(db: MonographDb): {
+  nodes: string[];
+  edgeRows: { source_id: string; target_id: string }[];
+} {
+  const nodeRows = db.prepare('SELECT id FROM nodes').all() as { id: string }[];
+  const edgeRows = db.prepare('SELECT source_id, target_id FROM edges').all() as {
+    source_id: string;
+    target_id: string;
+  }[];
+  return { nodes: nodeRows.map(r =&gt; r.id), edgeRows };
+}
+&nbsp;
+/**
+ * Find ALL strongly connected components (SCCs) using iterative Kosaraju's algorithm.
+ *
+ * Returns every SCC, including singleton components (single nodes with no self-loop).
+ * This is the full SCC decomposition of the graph.
+ *
+ * @param db - The MonographDb instance
+ * @returns Array of SCCs; each SCC is an array of node ids in that component.
+ */
+export function findStronglyConnectedComponents(db: MonographDb): string[][] {
+  const { nodes, edgeRows } = fetchGraphRows(db);
+  if (nodes.length === 0) return [];
+&nbsp;
+  const { adj, radj } = buildAdjacency(nodes, edgeRows);
+&nbsp;
+  const visited = new Set&lt;string&gt;();
+  const finishOrder: string[] = [];
+  iterativeDfs1(nodes, adj, visited, finishOrder);
+&nbsp;
+  const assigned = new Set&lt;string&gt;();
+  const sccs: string[][] = [];
+  for (let i = finishOrder.length - 1; i &gt;= 0; i--) {
+    const node = finishOrder[i];
+    if (!assigned.has(node)) {
+      const component: string[] = [];
+      iterativeDfs2(node, radj, assigned, component);
+      sccs.push(component);
+    }
+  }
+&nbsp;
+  return sccs;
+}
+&nbsp;
+/**
+ * Find all strongly connected components (SCCs) with more than 1 node,
+ * or self-loops, and return them as cycle node lists.
+ *
+ * Uses iterative Kosaraju's algorithm to avoid stack overflow on large graphs.
+ * Each SCC with size &gt; 1 represents a cycle. Self-loops are also detected.
+ *
+ * @param db - The MonographDb instance
+ * @returns Array of cycles; each cycle is an array of node ids participating in it.
+ */
+export function findCycles(db: MonographDb): string[][] {
+  const { nodes, edgeRows } = fetchGraphRows(db);
+  if (nodes.length === 0) return [];
+&nbsp;
+  const { adj, radj, selfLoops } = buildAdjacency(nodes, edgeRows);
+&nbsp;
+  // Pass 1: iterative DFS on original graph, build finish order
+  const visited = new Set&lt;string&gt;();
+  const finishOrder: string[] = [];
+  iterativeDfs1(nodes, adj, visited, finishOrder);
+&nbsp;
+  // Pass 2: iterative DFS on reverse graph in reverse finish order
+  const assigned = new Set&lt;string&gt;();
+  const sccs: string[][] = [];
+  for (let i = finishOrder.length - 1; i &gt;= 0; i--) {
+    const node = finishOrder[i];
+    if (!assigned.has(node)) {
+      const component: string[] = [];
+      iterativeDfs2(node, radj, assigned, component);
+      if (component.length &gt; 1) {
+        sccs.push(component);
+      }
+    }
+  }
+&nbsp;
+  // Add self-loops as single-element cycles
+  for (const node of selfLoops) {
+    sccs.push([node]);
+  }
+&nbsp;
+  return sccs;
+}
+&nbsp;
+/**
+ * Format cycle results as structured text with file:line hints for LLM navigation.
+ *
+ * @param cycles - Array of cycle arrays (node ids / file paths)
+ * @param nodeToFile - Optional map from node id to file path for resolving paths
+ * @returns Structured text output suitable for LLM consumption
+ */
+export function <span class="fstat-no" title="function not covered" >formatCycles(</span>
+  cycles: string[][],
+  nodeToFile?: Map&lt;string, string&gt;,
+): string {
+<span class="cstat-no" title="statement not covered" >  if (cycles.length === 0) {</span>
+<span class="cstat-no" title="statement not covered" >    return 'cycles: none\nstatus: no circular dependencies detected\n';</span>
+  }
+&nbsp;
+  const <span class="cstat-no" title="statement not covered" ><span class="fstat-no" title="function not covered" >resolve = (i</span>d: string): string =&gt; <span class="cstat-no" title="statement not covered" >nodeToFile?.get(id) ?? id;</span></span>
+&nbsp;
+  const lines: string[] = <span class="cstat-no" title="statement not covered" >[</span>
+    `cycles: ${cycles.length} circular dependency group(s) found`,
+    '',
+  ];
+&nbsp;
+  // Sort by cycle length ascending, then alphabetically
+  const sorted = <span class="cstat-no" title="statement not covered" >[...cycles].<span class="fstat-no" title="function not covered" >sort((a</span>, b) =&gt; {</span>
+<span class="cstat-no" title="statement not covered" >    if (a.length !== b.length) <span class="cstat-no" title="statement not covered" >return a.length - b.length;</span></span>
+<span class="cstat-no" title="statement not covered" >    return resolve(a[0]).localeCompare(resolve(b[0]));</span>
+  });
+&nbsp;
+<span class="cstat-no" title="statement not covered" >  sorted.<span class="fstat-no" title="function not covered" >forEach((c</span>ycle, i) =&gt; {</span>
+    const isSelfLoop = <span class="cstat-no" title="statement not covered" >cycle.length === 1;</span>
+    const label = <span class="cstat-no" title="statement not covered" >isSelfLoop ? 'self-loop' : `cycle(${cycle.length})`;</span>
+<span class="cstat-no" title="statement not covered" >    lines.push(`[${i + 1}] ${label}`);</span>
+<span class="cstat-no" title="statement not covered" >    for (const node of cycle) {</span>
+<span class="cstat-no" title="statement not covered" >      lines.push(`  file: ${resolve(node)}:1`);</span>
+    }
+<span class="cstat-no" title="statement not covered" >    if (!isSelfLoop) {</span>
+      // Show the closing edge
+<span class="cstat-no" title="statement not covered" >      lines.push(`  closes: ${resolve(cycle[cycle.length - 1])} → ${resolve(cycle[0])}`);</span>
+    }
+<span class="cstat-no" title="statement not covered" >    lines.push('');</span>
+  });
+&nbsp;
+  const selfLoopCount = <span class="cstat-no" title="statement not covered" >sorted.<span class="fstat-no" title="function not covered" >filter(c</span> =&gt; <span class="cstat-no" title="statement not covered" >c.length === 1)</span>.length;</span>
+  const multiNodeCount = <span class="cstat-no" title="statement not covered" >sorted.length - selfLoopCount;</span>
+<span class="cstat-no" title="statement not covered" >  lines.push(`summary: ${multiNodeCount} multi-node cycle(s), ${selfLoopCount} self-loop(s)`);</span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >  return lines.join('\n');</span>
+}
+&nbsp;</pre></td></tr></table></pre>
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+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
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