npm - @monoes/monograph - Versions diffs - 1.5.2 → 1.5.4 - Mend

@monoes/monograph 1.5.2 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (504) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/build-atomicity.test.ts +61 -0
package/__tests__/integration/call-attribution.test.ts +116 -0
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package/coverage/src/analysis/changed-files.ts.html +304 -0
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package/coverage/src/analysis/churn-cache.ts.html +622 -0
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package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
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package/coverage/src/analysis/corpus-health.ts.html +208 -0
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package/coverage/src/export/gexf.ts.html +262 -0
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+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import type { MonographDb } from '../storage/db.js';
+&nbsp;
+export interface PruneResult {
+  danglingEdgesRemoved: number;
+  orphanNodesRemoved: number;
+  staleFileNodesRemoved: number;
+}
+&nbsp;
+/**
+ * Remove edges whose source or target node does not exist in the nodes table.
+ *
+ * @param db - The MonographDb instance (better-sqlite3 Database)
+ * @returns The number of dangling edges pruned
+ */
+export function pruneDanglingEdges(db: MonographDb): number {
+  // Single-statement DELETE avoids fetching all dangling IDs then re-binding them
+  // as SQL variables (which would fail when edge count exceeds SQLITE_MAX_VARIABLE_NUMBER).
+  const result = db.prepare(`
+    DELETE FROM edges
+    WHERE NOT EXISTS (SELECT 1 FROM nodes n WHERE n.id = source_id)
+       OR NOT EXISTS (SELECT 1 FROM nodes n WHERE n.id = target_id)
+  `).run();
+&nbsp;
+  return result.changes;
+}
+&nbsp;
+/**
+ * Remove non-File nodes that have no incoming or outgoing edges.
+ * Leaves File nodes in place so they can still be queried even if isolated.
+ *
+ * @param db - The MonographDb instance
+ * @returns Number of orphan nodes removed
+ */
+export function <span class="fstat-no" title="function not covered" >pruneOrphanNodes(d</span>b: MonographDb): number {
+  const result = <span class="cstat-no" title="statement not covered" >db.prepare(`</span>
+    DELETE FROM nodes
+    WHERE label != 'File'
+      AND NOT EXISTS (SELECT 1 FROM edges WHERE source_id = nodes.id OR target_id = nodes.id)
+  `).run();
+<span class="cstat-no" title="statement not covered" >  return result.changes;</span>
+}
+&nbsp;
+/**
+ * Remove File nodes whose file_path no longer exists on disk.
+ * Also cascades to remove any edges connected to those nodes (via pruneDanglingEdges).
+ *
+ * @param db - The MonographDb instance
+ * @param existingPaths - Set of file paths that currently exist on disk
+ * @returns Number of stale File nodes removed (call pruneDanglingEdges after to clean edges)
+ */
+export function <span class="fstat-no" title="function not covered" >pruneStaleFileNodes(d</span>b: MonographDb, existingPaths: Set&lt;string&gt;): number {
+  const staleRows = <span class="cstat-no" title="statement not covered" >db.prepare(</span>
+    `SELECT id, file_path FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`,
+  ).all() as { id: string; file_path: string }[];
+&nbsp;
+  let removed = <span class="cstat-no" title="statement not covered" >0;</span>
+  const deleteStmt = <span class="cstat-no" title="statement not covered" >db.prepare(`DELETE FROM nodes WHERE id = ?`);</span>
+  const tx = <span class="cstat-no" title="statement not covered" >db.<span class="fstat-no" title="function not covered" >transaction(() =&gt; {</span></span>
+<span class="cstat-no" title="statement not covered" >    for (const row of staleRows) {</span>
+<span class="cstat-no" title="statement not covered" >      if (!existingPaths.has(row.file_path)) {</span>
+<span class="cstat-no" title="statement not covered" >        deleteStmt.run(row.id);</span>
+<span class="cstat-no" title="statement not covered" >        removed++;</span>
+      }
+    }
+  });
+<span class="cstat-no" title="statement not covered" >  tx();</span>
+<span class="cstat-no" title="statement not covered" >  return removed;</span>
+}
+&nbsp;
+/**
+ * Run a full prune pass: dangling edges → orphan nodes → stale file nodes.
+ * Optionally pass existingPaths to also remove deleted-file nodes.
+ */
+export function <span class="fstat-no" title="function not covered" >pruneAll(d</span>b: MonographDb, existingPaths?: Set&lt;string&gt;): PruneResult {
+  const danglingEdgesRemoved = <span class="cstat-no" title="statement not covered" >pruneDanglingEdges(db);</span>
+  const orphanNodesRemoved = <span class="cstat-no" title="statement not covered" >pruneOrphanNodes(db);</span>
+  const staleFileNodesRemoved = <span class="cstat-no" title="statement not covered" >existingPaths ? pruneStaleFileNodes(db, existingPaths) : 0;</span>
+  // A second dangling-edge pass cleans up any edges left by stale file node removal
+<span class="cstat-no" title="statement not covered" >  if (staleFileNodesRemoved &gt; 0) <span class="cstat-no" title="statement not covered" >pruneDanglingEdges(db);</span></span>
+<span class="cstat-no" title="statement not covered" >  return { danglingEdgesRemoved, orphanNodesRemoved, staleFileNodesRemoved };</span>
+}
+&nbsp;
+/**
+ * Format a PruneResult as structured text for LLM consumption.
+ */
+export function <span class="fstat-no" title="function not covered" >formatPruneResult(r</span>esult: PruneResult): string {
+  const total = <span class="cstat-no" title="statement not covered" >result.danglingEdgesRemoved + result.orphanNodesRemoved + result.staleFileNodesRemoved;</span>
+<span class="cstat-no" title="statement not covered" >  if (total === 0) <span class="cstat-no" title="statement not covered" >return 'Prune pass: nothing to remove — graph is clean.';</span></span>
+<span class="cstat-no" title="statement not covered" >  return [</span>
+    `Prune pass removed ${total} artifact(s):`,
+    `  dangling edges:    ${result.danglingEdgesRemoved}`,
+    `  orphan nodes:      ${result.orphanNodesRemoved}`,
+    `  stale file nodes:  ${result.staleFileNodesRemoved}`,
+  ].join('\n');
+}
+&nbsp;</pre></td></tr></table></pre>
+                <div class='push'></div><!-- for sticky footer -->
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+            <div class='footer quiet pad2 space-top1 center small'>
+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
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+<head>
+    <title>Code coverage report for src/graph/re-exports</title>
+    <meta charset="utf-8" />
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+        <h1><a href="../../../index.html">All files</a> src/graph/re-exports</h1>
+        <div class='clearfix'>
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+                <span class="strong">0% </span>
+                <span class="quiet">Statements</span>
+                <span class='fraction'>0/38</span>
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+                <span class="strong">0% </span>
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+                <span class="quiet">Functions</span>
+                <span class='fraction'>0/7</span>
+            </div>
+            <div class='fl pad1y space-right2'>
+                <span class="strong">0% </span>
+                <span class="quiet">Lines</span>
+                <span class='fraction'>0/32</span>
+            </div>
+        </div>
+        <p class="quiet">
+            Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+        </p>
+        <template id="filterTemplate">
+            <div class="quiet">
+                Filter:
+                <input type="search" id="fileSearch">
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+<table class="coverage-summary">
+<thead>
+<tr>
+   <th data-col="file" data-fmt="html" data-html="true" class="file">File</th>
+   <th data-col="pic" data-type="number" data-fmt="html" data-html="true" class="pic"></th>
+   <th data-col="statements" data-type="number" data-fmt="pct" class="pct">Statements</th>
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+   <th data-col="lines_raw" data-type="number" data-fmt="html" class="abs"></th>
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+</thead>
+<tbody><tr>
+	<td class="file low" data-value="propagate.ts"><a href="propagate.ts.html">propagate.ts</a></td>
+	<td data-value="0" class="pic low">
+	<div class="chart"><div class="cover-fill" style="width: 0%"></div><div class="cover-empty" style="width: 100%"></div></div>
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+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
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