@jbrowse/plugin-wiggle 3.6.5 → 4.0.0

package/dist/WiggleRPC/MultiWiggleGetSources.js

@@ -1,22 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MultiWiggleGetSources = void 0;
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
-class MultiWiggleGetSources extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'MultiWiggleGetSources';
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        return dataAdapter.getSources(regions, deserializedArgs);
-    }
-}
-exports.MultiWiggleGetSources = MultiWiggleGetSources;

package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts

@@ -1,12 +0,0 @@
-import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { QuantitativeStats } from '@jbrowse/core/util/stats';
-export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions {
-    name: string;
-    execute(args: {
-        adapterConfig: AnyConfigurationModel;
-        stopToken?: string;
-        headers?: Record<string, string>;
-        sessionId: string;
-    }, rpcDriverClassName: string): Promise<QuantitativeStats>;
-}

package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js

@@ -1,22 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.WiggleGetGlobalQuantitativeStats = void 0;
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
-class WiggleGetGlobalQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetGlobalQuantitativeStats';
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        return dataAdapter.getGlobalStats(deserializedArgs);
-    }
-}
-exports.WiggleGetGlobalQuantitativeStats = WiggleGetGlobalQuantitativeStats;

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts

@@ -1,13 +0,0 @@
-import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
-import type { Region } from '@jbrowse/core/util';
-export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions {
-    name: string;
-    execute(args: {
-        adapterConfig: Record<string, unknown>;
-        stopToken?: string;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<any>;
-}

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -1,22 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.WiggleGetMultiRegionQuantitativeStats = void 0;
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
-class WiggleGetMultiRegionQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetMultiRegionQuantitativeStats';
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
-    }
-}
-exports.WiggleGetMultiRegionQuantitativeStats = WiggleGetMultiRegionQuantitativeStats;

package/dist/WiggleRPC/getScoreMatrix.d.ts

@@ -1,6 +0,0 @@
-import type { GetScoreMatrixArgs } from './types';
-import type PluginManager from '@jbrowse/core/PluginManager';
-export declare function getScoreMatrix({ pluginManager, args, }: {
-    args: GetScoreMatrixArgs;
-    pluginManager: PluginManager;
-}): Promise<Record<string, number[]>>;

package/dist/WiggleRPC/getScoreMatrix.js

@@ -1,35 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getScoreMatrix = getScoreMatrix;
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const util_1 = require("@jbrowse/core/util");
-const rxjs_1 = require("rxjs");
-async function getScoreMatrix({ pluginManager, args, }) {
-    const { sources, regions, adapterConfig, sessionId, bpPerPx } = args;
-    const adapter = await (0, dataAdapterCache_1.getAdapter)(pluginManager, sessionId, adapterConfig);
-    const dataAdapter = adapter.dataAdapter;
-    const r0 = regions[0];
-    const r0len = r0.end - r0.start;
-    const w = Math.floor(r0len / bpPerPx);
-    const feats = await (0, rxjs_1.firstValueFrom)(dataAdapter.getFeatures(r0, args).pipe((0, rxjs_1.toArray)()));
-    const groups = (0, util_1.groupBy)(feats, f => f.get('source'));
-    const rows = {};
-    for (const source of sources) {
-        const { name } = source;
-        const features = groups[name] || [];
-        const arr = new Array(w).fill(0);
-        for (const feat of features) {
-            const fstart = feat.get('start');
-            const fend = feat.get('end');
-            const score = feat.get('score');
-            for (let i = fstart; i < fend; i += bpPerPx) {
-                const x = Math.floor((i - r0.start) / bpPerPx);
-                if (x >= 0 && x < w) {
-                    arr[x] || (arr[x] = score);
-                }
-            }
-        }
-        rows[name] = arr;
-    }
-    return rows;
-}

package/dist/WiggleRPC/rpcMethods.d.ts

@@ -1,5 +0,0 @@
-export * from './MultiWiggleGetSources';
-export * from './WiggleGetMultiRegionQuantitativeStats';
-export * from './WiggleGetGlobalQuantitativeStats';
-export * from './MultiWiggleGetScoreMatrix';
-export * from './MultiWiggleClusterScoreMatrix';

package/dist/WiggleRPC/rpcMethods.js

@@ -1,21 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-__exportStar(require("./MultiWiggleGetSources"), exports);
-__exportStar(require("./WiggleGetMultiRegionQuantitativeStats"), exports);
-__exportStar(require("./WiggleGetGlobalQuantitativeStats"), exports);
-__exportStar(require("./MultiWiggleGetScoreMatrix"), exports);
-__exportStar(require("./MultiWiggleClusterScoreMatrix"), exports);

package/dist/WiggleRPC/type.js

@@ -1 +0,0 @@
-"use strict";

package/dist/WiggleRPC/types.d.ts

@@ -1,13 +0,0 @@
-import type { Source } from '../util';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Region } from '@jbrowse/core/util';
-export interface GetScoreMatrixArgs {
-    adapterConfig: AnyConfigurationModel;
-    stopToken?: string;
-    sessionId: string;
-    headers?: Record<string, string>;
-    regions: Region[];
-    bpPerPx: number;
-    sources: Source[];
-    statusCallback?: (arg: string) => void;
-}

package/dist/WiggleRPC/types.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/WiggleRendering.d.ts

@@ -1,14 +0,0 @@
-import type { Feature } from '@jbrowse/core/util';
-import type { Region } from '@jbrowse/core/util/types';
-declare const WiggleRendering: (props: {
-    regions: Region[];
-    features: Map<string, Feature>;
-    bpPerPx: number;
-    width: number;
-    height: number;
-    blockKey: string;
-    onMouseLeave?: (event: React.MouseEvent) => void;
-    onMouseMove?: (event: React.MouseEvent, arg?: string) => void;
-    onFeatureClick?: (event: React.MouseEvent, arg?: string) => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default WiggleRendering;

package/dist/WiggleRendering.js

@@ -1,35 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const mobx_react_1 = require("mobx-react");
-const WiggleRendering = (0, mobx_react_1.observer)(function (props) {
-    const { regions, features, bpPerPx, width, height, onMouseLeave, onMouseMove, onFeatureClick, } = props;
-    const region = regions[0];
-    const ref = (0, react_1.useRef)(null);
-    function getFeatureUnderMouse(eventClientX) {
-        let offset = 0;
-        if (ref.current) {
-            offset = ref.current.getBoundingClientRect().left;
-        }
-        const offsetX = eventClientX - offset;
-        const px = region.reversed ? width - offsetX : offsetX;
-        const clientBp = region.start + bpPerPx * px;
-        let featureUnderMouse;
-        for (const feature of features.values()) {
-            if (clientBp <= feature.get('end') + bpPerPx &&
-                clientBp >= feature.get('start')) {
-                featureUnderMouse = feature;
-                break;
-            }
-        }
-        return featureUnderMouse;
-    }
-    return ((0, jsx_runtime_1.jsx)("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: e => { var _a; return onMouseMove === null || onMouseMove === void 0 ? void 0 : onMouseMove(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: e => { var _a; return onFeatureClick === null || onFeatureClick === void 0 ? void 0 : onFeatureClick(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: e => onMouseLeave === null || onMouseLeave === void 0 ? void 0 : onMouseLeave(e), style: {
-            overflow: 'visible',
-            position: 'relative',
-            height,
-        }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props }) }));
-});
-exports.default = WiggleRendering;

package/dist/XYPlotRenderer/XYPlotRenderer.d.ts

@@ -1,7 +0,0 @@
-import WiggleBaseRenderer from '../WiggleBaseRenderer';
-import type { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export default class XYPlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
-        reducedFeatures: import("@jbrowse/core/util").Feature[];
-    }>;
-}

package/dist/XYPlotRenderer/XYPlotRenderer.js

@@ -1,61 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-const util_1 = require("../util");
-class XYPlotRenderer extends WiggleBaseRenderer_1.default {
-    async draw(ctx, props) {
-        const { inverted, stopToken, features, config } = props;
-        const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
-        const pivotValue = (0, configuration_1.readConfObject)(config, 'bicolorPivotValue');
-        const negColor = (0, configuration_1.readConfObject)(config, 'negColor');
-        const posColor = (0, configuration_1.readConfObject)(config, 'posColor');
-        return drawXY(ctx, {
-            ...props,
-            colorCallback: !config.color.isCallback
-                ? (_feature, score) => (score < pivotValue ? negColor : posColor)
-                : (feature, _score) => (0, configuration_1.readConfObject)(config, 'color', { feature }),
-            offset: util_1.YSCALEBAR_LABEL_OFFSET,
-            features: [...features.values()],
-            inverted,
-            stopToken,
-        });
-    }
-}
-exports.default = XYPlotRenderer;

package/dist/XYPlotRenderer/configSchema.d.ts

@@ -1,57 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    filled: {
-        type: string;
-        defaultValue: boolean;
-    };
-    displayCrossHatches: {
-        type: string;
-        description: string;
-        defaultValue: boolean;
-    };
-    summaryScoreMode: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    minSize: {
-        type: string;
-        defaultValue: number;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
-export default configSchema;

package/dist/XYPlotRenderer/configSchema.js

@@ -1,34 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configSchema_1 = __importDefault(require("../configSchema"));
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('XYPlotRenderer', {
-    filled: {
-        type: 'boolean',
-        defaultValue: true,
-    },
-    displayCrossHatches: {
-        type: 'boolean',
-        description: 'choose to draw cross hatches (sideways lines)',
-        defaultValue: false,
-    },
-    summaryScoreMode: {
-        type: 'stringEnum',
-        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
-        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
-        defaultValue: 'whiskers',
-    },
-    minSize: {
-        type: 'number',
-        defaultValue: 0.7,
-    },
-}, {
-    baseConfiguration: configSchema_1.default,
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/XYPlotRenderer/index.d.ts

@@ -1,5 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function XYPlotRendererF(pluginManager: PluginManager): void;
-export { default as XYPlotRenderer } from './XYPlotRenderer';
-export { default as ReactComponent } from '../WiggleRendering';
-export { default as configSchema } from './configSchema';

package/dist/XYPlotRenderer/index.js

@@ -1,24 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = exports.ReactComponent = exports.XYPlotRenderer = void 0;
-exports.default = XYPlotRendererF;
-const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
-const XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function XYPlotRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new XYPlotRenderer_1.default({
-        name: 'XYPlotRenderer',
-        ReactComponent: WiggleRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}
-var XYPlotRenderer_2 = require("./XYPlotRenderer");
-Object.defineProperty(exports, "XYPlotRenderer", { enumerable: true, get: function () { return __importDefault(XYPlotRenderer_2).default; } });
-var WiggleRendering_2 = require("../WiggleRendering");
-Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleRendering_2).default; } });
-var configSchema_2 = require("./configSchema");
-Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });

package/dist/configSchema.d.ts

@@ -1,37 +0,0 @@
-declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default WiggleRenderer;

package/dist/configSchema.js

@@ -1,47 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function x() { }
-const WiggleRenderer = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
-    color: {
-        type: 'color',
-        description: 'the color of track, overrides posColor and negColor',
-        defaultValue: '#f0f',
-        contextVariable: ['feature'],
-    },
-    posColor: {
-        type: 'color',
-        description: 'the color to use when the score is positive',
-        defaultValue: 'blue',
-        contextVariable: ['feature'],
-    },
-    negColor: {
-        type: 'color',
-        description: 'the color to use when the score is negative',
-        defaultValue: 'red',
-        contextVariable: ['feature'],
-    },
-    clipColor: {
-        type: 'color',
-        description: 'the color of the clipping marker',
-        defaultValue: 'red',
-    },
-    bicolorPivot: {
-        type: 'stringEnum',
-        model: mobx_state_tree_1.types.enumeration('Scale type', [
-            'numeric',
-            'mean',
-            'z_score',
-            'none',
-        ]),
-        description: 'type of bicolor pivot',
-        defaultValue: 'numeric',
-    },
-    bicolorPivotValue: {
-        type: 'number',
-        defaultValue: 0,
-        description: 'value to use for bicolor pivot',
-    },
-}, { explicitlyTyped: true });
-exports.default = WiggleRenderer;

package/dist/drawDensity.d.ts

@@ -1,18 +0,0 @@
-import type { ScaleOpts } from './util';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Feature, Region } from '@jbrowse/core/util';
-export declare function drawDensity(ctx: CanvasRenderingContext2D, props: {
-    features: Map<string, Feature> | Feature[];
-    regions: Region[];
-    bpPerPx: number;
-    scaleOpts: ScaleOpts;
-    height: number;
-    ticks: {
-        values: number[];
-    };
-    displayCrossHatches: boolean;
-    config: AnyConfigurationModel;
-    stopToken?: string;
-}): {
-    reducedFeatures: Feature[];
-};

package/dist/drawDensity.js

@@ -1,81 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.drawDensity = drawDensity;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const stopToken_1 = require("@jbrowse/core/util/stopToken");
-const util_2 = require("./util");
-const fudgeFactor = 0.3;
-const clipHeight = 2;
-function drawDensity(ctx, props) {
-    const { stopToken, features, regions, bpPerPx, scaleOpts, height, config } = props;
-    const region = regions[0];
-    const pivot = (0, configuration_1.readConfObject)(config, 'bicolorPivot');
-    const pivotValue = (0, configuration_1.readConfObject)(config, 'bicolorPivotValue');
-    const negColor = (0, configuration_1.readConfObject)(config, 'negColor');
-    const posColor = (0, configuration_1.readConfObject)(config, 'posColor');
-    const color = (0, configuration_1.readConfObject)(config, 'color');
-    const clipColor = (0, configuration_1.readConfObject)(config, 'clipColor');
-    const crossing = pivot !== 'none' && scaleOpts.scaleType !== 'log';
-    const scale = (0, util_2.getScale)({
-        ...scaleOpts,
-        pivotValue: crossing ? pivotValue : undefined,
-        range: crossing ? [negColor, '#eee', posColor] : ['#eee', posColor],
-    });
-    const scale2 = (0, util_2.getScale)({ ...scaleOpts, range: [0, height] });
-    const cb = color === '#f0f'
-        ? (_, score) => scale(score)
-        : (feature, score) => (0, configuration_1.readConfObject)(config, 'color', { feature, score });
-    const domain = scale2.domain();
-    const niceMin = domain[0];
-    const niceMax = domain[1];
-    let prevLeftPx = Number.NEGATIVE_INFINITY;
-    let hasClipping = false;
-    const reducedFeatures = [];
-    let start = performance.now();
-    for (const feature of features.values()) {
-        if (performance.now() - start > 400) {
-            (0, stopToken_1.checkStopToken)(stopToken);
-            start = performance.now();
-        }
-        const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
-        if (Math.floor(leftPx) !== Math.floor(prevLeftPx) || rightPx - leftPx > 1) {
-            reducedFeatures.push(feature);
-            prevLeftPx = leftPx;
-        }
-        const score = feature.get('score');
-        hasClipping = hasClipping || score > niceMax || score < niceMin;
-        const w = rightPx - leftPx + fudgeFactor;
-        if (score >= scaleOpts.domain[0]) {
-            ctx.fillStyle = cb(feature, score);
-            ctx.fillRect(leftPx, 0, w, height);
-        }
-        else {
-            ctx.fillStyle = '#eee';
-            ctx.fillRect(leftPx, 0, w, height);
-        }
-    }
-    ctx.save();
-    if (hasClipping) {
-        ctx.fillStyle = clipColor;
-        for (const feature of features.values()) {
-            if (performance.now() - start > 400) {
-                (0, stopToken_1.checkStopToken)(stopToken);
-                start = performance.now();
-            }
-            const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
-            const w = rightPx - leftPx + fudgeFactor;
-            const score = feature.get('score');
-            if (score > niceMax) {
-                (0, util_2.fillRectCtx)(leftPx, 0, w, clipHeight, ctx);
-            }
-            else if (score < niceMin && scaleOpts.scaleType !== 'log') {
-                (0, util_2.fillRectCtx)(leftPx, 0, w, clipHeight, ctx);
-            }
-        }
-    }
-    ctx.restore();
-    return {
-        reducedFeatures,
-    };
-}

package/dist/drawLine.d.ts

@@ -1,20 +0,0 @@
-import type { ScaleOpts } from './util';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Feature, Region } from '@jbrowse/core/util';
-export declare function drawLine(ctx: CanvasRenderingContext2D, props: {
-    features: Map<string, Feature> | Feature[];
-    regions: Region[];
-    bpPerPx: number;
-    scaleOpts: ScaleOpts;
-    height: number;
-    ticks: {
-        values: number[];
-    };
-    displayCrossHatches: boolean;
-    colorCallback: (f: Feature, score: number) => string;
-    config: AnyConfigurationModel;
-    offset?: number;
-    stopToken?: string;
-}): {
-    reducedFeatures: Feature[];
-};