@jbrowse/plugin-wiggle 3.6.5 → 4.0.0

package/dist/BigWigAdapter/index.js

@@ -1,54 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = BigWigAdapterF;
-const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function BigWigAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new AdapterType_1.default({
-        name: 'BigWigAdapter',
-        displayName: 'BigWig adapter',
-        configSchema: configSchema_1.default,
-        adapterCapabilities: [
-            'hasResolution',
-            'hasLocalStats',
-            'hasGlobalStats',
-        ],
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
-    }));
-}

package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -1,8 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-declare const ConfirmDialog: ({ tracks, onClose, }: {
-    tracks: AnyConfigurationModel[];
-    onClose: (arg: boolean, arg1?: {
-        name: string;
-    }) => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ConfirmDialog;

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js

@@ -1,26 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const Dialog_1 = __importDefault(require("@jbrowse/core/ui/Dialog"));
-const material_1 = require("@mui/material");
-const ConfirmDialog = ({ tracks, onClose, }) => {
-    const [val, setVal] = (0, react_1.useState)(`MultiWiggle ${Date.now()}`);
-    const allQuant = tracks.every(t => t.type === 'QuantitativeTrack');
-    return ((0, jsx_runtime_1.jsxs)(Dialog_1.default, { open: true, onClose: () => {
-            onClose(false);
-        }, title: "Confirm multi-wiggle track create", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: [!allQuant
-                                ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
-                                : null, "Listing:"] }), (0, jsx_runtime_1.jsx)("ul", { children: tracks.map(track => ((0, jsx_runtime_1.jsxs)("li", { children: [(0, configuration_1.readConfObject)(track, 'name'), " - ", track.type] }, track.trackId))) }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: val, onChange: event => {
-                            setVal(event.target.value);
-                        }, helperText: "Track name" }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Confirm creation of track?" })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                            onClose(false);
-                        }, color: "primary", children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                            onClose(true, { name: val });
-                        }, color: "primary", variant: "contained", autoFocus: true, children: "Submit" })] })] }));
-};
-exports.default = ConfirmDialog;

package/dist/CreateMultiWiggleExtension/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function CreateMultiWiggleExtensionF(pm: PluginManager): void;

package/dist/CreateMultiWiggleExtension/index.js

@@ -1,95 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = CreateMultiWiggleExtensionF;
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
-function makeTrack({ model, arg, }) {
-    const tracks = model.selection;
-    const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
-    const subadapters = tracks
-        .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
-        .map((c, idx) => ({ ...c, source: trackIds[idx] }));
-    const now = +Date.now();
-    const trackId = `multitrack-${now}-sessionTrack`;
-    const session = (0, util_1.getSession)(model);
-    if ((0, util_1.isSessionWithAddTracks)(session)) {
-        session.addTrackConf({
-            type: 'MultiQuantitativeTrack',
-            trackId,
-            name: arg.name,
-            assemblyNames: [
-                ...new Set(tracks.flatMap(c => (0, configuration_1.readConfObject)(c, 'assemblyNames'))),
-            ],
-            adapter: {
-                type: 'MultiWiggleAdapter',
-                subadapters,
-            },
-        });
-        model.view.showTrack(trackId);
-    }
-}
-function CreateMultiWiggleExtensionF(pm) {
-    pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
-        const { session } = props;
-        return [
-            ...items,
-            ...((0, util_1.isSessionWithAddTracks)(session)
-                ? [
-                    {
-                        label: 'Create multi-wiggle track',
-                        onClick: (model) => {
-                            const tracks = model.selection;
-                            (0, util_1.getSession)(model).queueDialog(handleClose => [
-                                ConfirmDialog,
-                                {
-                                    tracks,
-                                    onClose: (arg, arg1) => {
-                                        if (arg && arg1) {
-                                            makeTrack({ model, arg: arg1 });
-                                        }
-                                        handleClose();
-                                    },
-                                },
-                            ]);
-                        },
-                    },
-                ]
-                : []),
-        ];
-    });
-}

package/dist/DensityRenderer/DensityRenderer.d.ts

@@ -1,7 +0,0 @@
-import WiggleBaseRenderer from '../WiggleBaseRenderer';
-import type { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export default class DensityRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
-        reducedFeatures: import("@jbrowse/core/util").Feature[];
-    }>;
-}

package/dist/DensityRenderer/DensityRenderer.js

@@ -1,46 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-class DensityRenderer extends WiggleBaseRenderer_1.default {
-    async draw(ctx, props) {
-        const { drawDensity } = await Promise.resolve().then(() => __importStar(require('../drawDensity')));
-        return drawDensity(ctx, props);
-    }
-}
-exports.default = DensityRenderer;

package/dist/DensityRenderer/configSchema.d.ts

@@ -1,37 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
-export default configSchema;

package/dist/DensityRenderer/configSchema.js

@@ -1,13 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const configSchema_1 = __importDefault(require("../configSchema"));
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer', {}, {
-    baseConfiguration: configSchema_1.default,
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/DensityRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function DensityRendererF(pluginManager: PluginManager): void;

package/dist/DensityRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = DensityRendererF;
-const DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
-function DensityRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new DensityRenderer_1.default({
-        name: 'DensityRenderer',
-        ReactComponent: WiggleRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/GuessAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function GuessAdapterF(pluginManager: PluginManager): void;

package/dist/GuessAdapter/index.js

@@ -1,25 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = GuessAdapterF;
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-function GuessAdapterF(pluginManager) {
-    pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
-        return (file, index, adapterHint) => {
-            const fileName = (0, tracks_1.getFileName)(file);
-            return (0, util_1.testAdapter)(fileName, /\.(bw|bigwig)$/i, adapterHint, 'BigWigAdapter')
-                ? {
-                    type: 'BigWigAdapter',
-                    bigWigLocation: file,
-                }
-                : cb(file, index, adapterHint);
-        };
-    });
-    pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
-        return (adapterName) => {
-            return adapterName === 'BigWigAdapter'
-                ? 'QuantitativeTrack'
-                : trackTypeGuesser(adapterName);
-        };
-    });
-}

package/dist/LinePlotRenderer/LinePlotRenderer.d.ts

@@ -1,8 +0,0 @@
-import WiggleBaseRenderer from '../WiggleBaseRenderer';
-import type { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-import type { Feature } from '@jbrowse/core/util';
-export default class LinePlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
-        reducedFeatures: Feature[];
-    }>;
-}

package/dist/LinePlotRenderer/LinePlotRenderer.js

@@ -1,56 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-const util_1 = require("../util");
-class LinePlotRenderer extends WiggleBaseRenderer_1.default {
-    async draw(ctx, props) {
-        const { config } = props;
-        const c = (0, configuration_1.readConfObject)(config, 'color');
-        const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
-        return drawLine(ctx, {
-            ...props,
-            offset: util_1.YSCALEBAR_LABEL_OFFSET,
-            colorCallback: c === '#f0f'
-                ? () => 'grey'
-                : (feature) => (0, configuration_1.readConfObject)(config, 'color', { feature }),
-        });
-    }
-}
-exports.default = LinePlotRenderer;

package/dist/LinePlotRenderer/configSchema.d.ts

@@ -1,43 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    displayCrossHatches: {
-        type: string;
-        description: string;
-        defaultValue: boolean;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
-export default configSchema;

package/dist/LinePlotRenderer/configSchema.js

@@ -1,19 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const configSchema_1 = __importDefault(require("../configSchema"));
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('LinePlotRenderer', {
-    displayCrossHatches: {
-        type: 'boolean',
-        description: 'choose to draw cross hatches (sideways lines)',
-        defaultValue: false,
-    },
-}, {
-    baseConfiguration: configSchema_1.default,
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/LinePlotRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinePlotRendererF(pluginManager: PluginManager): void;

package/dist/LinePlotRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LinePlotRendererF;
-const configSchema_1 = __importDefault(require("./configSchema"));
-const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
-const LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
-function LinePlotRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new LinePlotRenderer_1.default({
-        name: 'LinePlotRenderer',
-        ReactComponent: WiggleRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -1,12 +0,0 @@
-declare const SetColorDialog: ({ model, handleClose, }: {
-    model: {
-        color?: string;
-        posColor?: string;
-        negColor?: string;
-        setColor: (arg?: string) => void;
-        setPosColor: (arg?: string) => void;
-        setNegColor: (arg?: string) => void;
-    };
-    handleClose: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SetColorDialog;

package/dist/LinearWiggleDisplay/components/SetColorDialog.js

@@ -1,31 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const ColorPicker_1 = require("@jbrowse/core/ui/ColorPicker");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const SetColorDialog = (0, mobx_react_1.observer)(function SetColorDialog({ model, handleClose, }) {
-    const [posneg, setPosNeg] = (0, react_1.useState)(false);
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set color", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: !posneg, onClick: () => {
-                            setPosNeg(false);
-                        }, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "Overall color" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: posneg, onClick: () => {
-                            setPosNeg(true);
-                        }, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "Positive/negative color" }), posneg ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Positive color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.posColor || 'black', onChange: event => {
-                                    model.setPosColor(event);
-                                    model.setColor(undefined);
-                                } }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Negative color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.negColor || 'black', onChange: event => {
-                                    model.setNegColor(event);
-                                    model.setColor(undefined);
-                                } })] })) : ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Overall color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.color || 'black', onChange: event => {
-                                    model.setColor(event);
-                                } })] }))] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                            model.setPosColor(undefined);
-                            model.setNegColor(undefined);
-                            model.setColor(undefined);
-                        }, color: "secondary", variant: "contained", children: "Restore default" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
-                            handleClose();
-                        }, children: "Submit" })] })] }));
-});
-exports.default = SetColorDialog;

package/dist/LinearWiggleDisplay/components/Tooltip.d.ts

@@ -1,15 +0,0 @@
-import type { TooltipContentsComponent } from '../../Tooltip';
-import type { Feature } from '@jbrowse/core/util';
-type Coord = [number, number];
-declare const WiggleTooltip: (props: {
-    model: {
-        featureUnderMouse?: Feature;
-    };
-    height: number;
-    offsetMouseCoord: Coord;
-    clientMouseCoord: Coord;
-    clientRect?: DOMRect;
-    TooltipContents?: TooltipContentsComponent;
-}) => import("react/jsx-runtime").JSX.Element;
-export default WiggleTooltip;
-export { default as Tooltip } from '../../Tooltip';

package/dist/LinearWiggleDisplay/components/Tooltip.js

@@ -1,32 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Tooltip = void 0;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const mobx_react_1 = require("mobx-react");
-const Tooltip_1 = __importDefault(require("../../Tooltip"));
-const util_1 = require("../../util");
-const en = (n) => n.toLocaleString('en-US');
-const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ feature }, ref) {
-    const start = feature.get('start') + 1;
-    const end = feature.get('end');
-    const refName = feature.get('refName');
-    const name = feature.get('name');
-    const loc = [
-        refName,
-        name,
-        start === end ? en(start) : `${en(start)}..${en(end)}`,
-    ]
-        .filter(f => !!f)
-        .join(':');
-    return feature.get('summary') !== undefined ? ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [loc, (0, jsx_runtime_1.jsx)("br", {}), "Max: ", (0, util_1.toP)(feature.get('maxScore')), (0, jsx_runtime_1.jsx)("br", {}), "Avg: ", (0, util_1.toP)(feature.get('score')), (0, jsx_runtime_1.jsx)("br", {}), "Min: ", (0, util_1.toP)(feature.get('minScore'))] })) : ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [loc, (0, jsx_runtime_1.jsx)("br", {}), `${(0, util_1.toP)(feature.get('score'))}`] }));
-});
-const WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
-    return (0, jsx_runtime_1.jsx)(Tooltip_1.default, { TooltipContents: TooltipContents, ...props });
-});
-exports.default = WiggleTooltip;
-var Tooltip_2 = require("../../Tooltip");
-Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,5 +0,0 @@
-import type { WiggleDisplayModel } from '../model';
-declare const LinearWiggleDisplay: (props: {
-    model: WiggleDisplayModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default LinearWiggleDisplay;

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -1,28 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_react_1 = require("mobx-react");
-const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
-const LinearWiggleDisplay = (0, mobx_react_1.observer)(function (props) {
-    const { model } = props;
-    const { stats, height, graphType } = model;
-    const { trackLabels } = (0, util_1.getContainingView)(model);
-    const track = (0, util_1.getContainingTrack)(model);
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }), stats && graphType ? ((0, jsx_runtime_1.jsx)("svg", { style: {
-                    position: 'absolute',
-                    top: 0,
-                    left: trackLabels === 'overlapping'
-                        ? (0, util_1.measureText)((0, configuration_1.getConf)(track, 'name'), 12.8) + 100
-                        : 50,
-                    pointerEvents: 'none',
-                    height,
-                    width: 50,
-                }, children: (0, jsx_runtime_1.jsx)(YScaleBar_1.default, { model: model }) })) : null] }));
-});
-exports.default = LinearWiggleDisplay;