@jbrowse/plugin-wiggle 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +14 -1
- package/esm/BigWigAdapter/BigWigAdapter.js +118 -22
- package/esm/BigWigAdapter/configSchema.d.ts +2 -2
- package/esm/BigWigAdapter/configSchema.js +1 -1
- package/esm/BigWigAdapter/index.js +2 -2
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +2 -2
- package/esm/DensityRenderer/DensityRenderer.d.ts +5 -6
- package/esm/DensityRenderer/DensityRenderer.js +6 -5
- package/esm/DensityRenderer/configSchema.d.ts +3 -3
- package/esm/DensityRenderer/configSchema.js +1 -1
- package/esm/DensityRenderer/index.js +11 -9
- package/esm/DensityRenderer/makeImageData.d.ts +3 -0
- package/esm/DensityRenderer/makeImageData.js +13 -0
- package/esm/DensityRenderer/renderDensity.d.ts +3 -0
- package/esm/DensityRenderer/renderDensity.js +18 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +5 -7
- package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -15
- package/esm/LinePlotRenderer/configSchema.d.ts +4 -4
- package/esm/LinePlotRenderer/configSchema.js +1 -1
- package/esm/LinePlotRenderer/index.js +4 -4
- package/esm/LinePlotRenderer/makeImageData.d.ts +3 -0
- package/esm/LinePlotRenderer/makeImageData.js +13 -0
- package/esm/LinePlotRenderer/renderLinePlot.d.ts +3 -0
- package/esm/LinePlotRenderer/renderLinePlot.js +23 -0
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.js +10 -6
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/esm/LinearWiggleDisplay/configSchema.d.ts +9 -9
- package/esm/LinearWiggleDisplay/configSchema.js +2 -2
- package/esm/LinearWiggleDisplay/index.d.ts +3 -3
- package/esm/LinearWiggleDisplay/index.js +6 -6
- package/esm/LinearWiggleDisplay/model.d.ts +1130 -92
- package/esm/LinearWiggleDisplay/model.js +58 -18
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +1 -1
- package/esm/LinearWiggleDisplay/renderSvg.js +3 -2
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +5 -7
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +6 -24
- package/esm/MultiDensityRenderer/configSchema.d.ts +3 -3
- package/esm/MultiDensityRenderer/configSchema.js +1 -1
- package/esm/MultiDensityRenderer/index.js +4 -4
- package/esm/MultiDensityRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiDensityRenderer/makeImageData.js +7 -0
- package/esm/MultiDensityRenderer/renderMultiDensity.d.ts +3 -0
- package/esm/MultiDensityRenderer/renderMultiDensity.js +37 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +5 -7
- package/esm/MultiLineRenderer/MultiLineRenderer.js +6 -17
- package/esm/MultiLineRenderer/configSchema.d.ts +5 -5
- package/esm/MultiLineRenderer/configSchema.js +2 -2
- package/esm/MultiLineRenderer/index.js +4 -4
- package/esm/MultiLineRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiLineRenderer/makeImageData.js +7 -0
- package/esm/MultiLineRenderer/renderMultiLine.d.ts +3 -0
- package/esm/MultiLineRenderer/renderMultiLine.js +34 -0
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +11 -5
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +4 -4
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +5 -5
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +2 -4
- package/esm/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +12 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItemText.js +11 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +4 -3
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -34
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -4
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +15 -12
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +13 -6
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +24 -21
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +5 -16
- package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.js +15 -0
- package/esm/MultiLinearWiggleDisplay/components/types.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/types.js +1 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.d.ts +31 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +45 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +81 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.js +4 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.js +39 -0
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +5 -9
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +9 -9
- package/esm/MultiLinearWiggleDisplay/configSchema.js +2 -2
- package/esm/MultiLinearWiggleDisplay/index.js +3 -3
- package/esm/MultiLinearWiggleDisplay/model.d.ts +3628 -93
- package/esm/MultiLinearWiggleDisplay/model.js +80 -50
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +3 -2
- package/esm/MultiLinearWiggleDisplay/types.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/util.d.ts +0 -1
- package/esm/MultiLinearWiggleDisplay/util.js +1 -7
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +16 -11
- package/esm/MultiQuantitativeTrack/index.js +13 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +5 -7
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +6 -29
- package/esm/MultiRowLineRenderer/configSchema.d.ts +5 -5
- package/esm/MultiRowLineRenderer/configSchema.js +2 -2
- package/esm/MultiRowLineRenderer/index.js +4 -4
- package/esm/MultiRowLineRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiRowLineRenderer/makeImageData.js +7 -0
- package/esm/MultiRowLineRenderer/renderMultiRowLine.d.ts +3 -0
- package/esm/MultiRowLineRenderer/renderMultiRowLine.js +44 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +5 -7
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +6 -29
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -2
- package/esm/MultiRowXYPlotRenderer/index.js +4 -4
- package/esm/MultiRowXYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/makeImageData.js +7 -0
- package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.js +42 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +7 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +81 -26
- package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -2
- package/esm/MultiWiggleAdapter/index.js +2 -2
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +4 -5
- package/esm/MultiWiggleAddTrackWorkflow/index.js +2 -2
- package/esm/MultiWiggleRendering.d.ts +7 -7
- package/esm/MultiWiggleRendering.js +9 -7
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +5 -7
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +6 -20
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/MultiXYPlotRenderer/configSchema.js +2 -2
- package/esm/MultiXYPlotRenderer/index.js +4 -4
- package/esm/MultiXYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/makeImageData.js +7 -0
- package/esm/MultiXYPlotRenderer/renderMultiXYPlot.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/renderMultiXYPlot.js +35 -0
- package/esm/QuantitativeTrack/configSchema.d.ts +16 -11
- package/esm/QuantitativeTrack/index.js +13 -2
- package/esm/SVGErrorBox.d.ts +5 -0
- package/esm/SVGErrorBox.js +4 -0
- package/esm/Tooltip.d.ts +1 -3
- package/esm/Tooltip.js +7 -7
- package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +2 -10
- package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.js +3 -15
- package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +1 -1
- package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js +2 -5
- package/esm/WiggleRPC/MultiWiggleGetSources.js +1 -4
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +1 -4
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +10 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +26 -5
- package/esm/WiggleRPC/executeClusterScoreMatrix.d.ts +6 -0
- package/esm/WiggleRPC/executeClusterScoreMatrix.js +15 -0
- package/esm/WiggleRPC/getScoreMatrix.d.ts +1 -1
- package/esm/WiggleRPC/getScoreMatrix.js +9 -6
- package/esm/WiggleRPC/rpcMethods.d.ts +5 -5
- package/esm/WiggleRPC/rpcMethods.js +5 -5
- package/esm/WiggleRPC/types.d.ts +1 -1
- package/esm/WiggleRendering.d.ts +2 -3
- package/esm/WiggleRendering.js +16 -3
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +5 -6
- package/esm/XYPlotRenderer/XYPlotRenderer.js +6 -20
- package/esm/XYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/XYPlotRenderer/configSchema.js +2 -2
- package/esm/XYPlotRenderer/index.d.ts +3 -3
- package/esm/XYPlotRenderer/index.js +14 -12
- package/esm/XYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/XYPlotRenderer/makeImageData.js +13 -0
- package/esm/XYPlotRenderer/renderXYPlot.d.ts +3 -0
- package/esm/XYPlotRenderer/renderXYPlot.js +23 -0
- package/esm/configSchema.d.ts +3 -3
- package/esm/configSchema.js +1 -1
- package/esm/drawDensity.d.ts +4 -2
- package/esm/drawDensity.js +25 -15
- package/esm/drawLine.d.ts +5 -3
- package/esm/drawLine.js +118 -41
- package/esm/drawXY.d.ts +4 -2
- package/esm/drawXY.js +75 -36
- package/esm/getMultiWiggleSourcesAutorun.d.ts +4 -2
- package/esm/getMultiWiggleSourcesAutorun.js +7 -2
- package/esm/getQuantitativeStats.d.ts +4 -2
- package/esm/getQuantitativeStats.js +18 -7
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -2
- package/esm/getQuantitativeStatsAutorun.js +3 -3
- package/esm/index.d.ts +15 -19
- package/esm/index.js +31 -37
- package/esm/multiRendererHelper.d.ts +7 -0
- package/esm/multiRendererHelper.js +12 -0
- package/esm/saveTrackFormats/bedGraph.d.ts +4 -0
- package/esm/saveTrackFormats/bedGraph.js +11 -0
- package/esm/shared/SharedWiggleConfigSchema.d.ts +5 -5
- package/esm/shared/SharedWiggleConfigSchema.js +1 -1
- package/esm/shared/SharedWiggleMixin.d.ts +1083 -120
- package/esm/shared/SharedWiggleMixin.js +48 -26
- package/esm/shared/YScaleBar.d.ts +1 -1
- package/esm/shared/YScaleBar.js +16 -4
- package/esm/shared/axisPropsFromTickScale.d.ts +7 -0
- package/esm/shared/axisPropsFromTickScale.js +12 -0
- package/esm/svgExportUtil.d.ts +9 -0
- package/esm/svgExportUtil.js +6 -0
- package/esm/types.d.ts +24 -0
- package/esm/types.js +1 -0
- package/esm/util.d.ts +35 -1
- package/esm/util.js +61 -2
- package/package.json +35 -38
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +0 -25
- package/dist/BigWigAdapter/BigWigAdapter.js +0 -81
- package/dist/BigWigAdapter/configSchema.d.ts +0 -20
- package/dist/BigWigAdapter/configSchema.js +0 -37
- package/dist/BigWigAdapter/index.d.ts +0 -2
- package/dist/BigWigAdapter/index.js +0 -54
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -8
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -26
- package/dist/CreateMultiWiggleExtension/index.d.ts +0 -2
- package/dist/CreateMultiWiggleExtension/index.js +0 -95
- package/dist/DensityRenderer/DensityRenderer.d.ts +0 -7
- package/dist/DensityRenderer/DensityRenderer.js +0 -46
- package/dist/DensityRenderer/configSchema.d.ts +0 -37
- package/dist/DensityRenderer/configSchema.js +0 -13
- package/dist/DensityRenderer/index.d.ts +0 -2
- package/dist/DensityRenderer/index.js +0 -17
- package/dist/GuessAdapter/index.d.ts +0 -2
- package/dist/GuessAdapter/index.js +0 -25
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +0 -8
- package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -56
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -43
- package/dist/LinePlotRenderer/configSchema.js +0 -19
- package/dist/LinePlotRenderer/index.d.ts +0 -2
- package/dist/LinePlotRenderer/index.js +0 -17
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -12
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -31
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +0 -15
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -32
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -28
- package/dist/LinearWiggleDisplay/configSchema.d.ts +0 -78
- package/dist/LinearWiggleDisplay/configSchema.js +0 -29
- package/dist/LinearWiggleDisplay/index.d.ts +0 -5
- package/dist/LinearWiggleDisplay/index.js +0 -65
- package/dist/LinearWiggleDisplay/model.d.ts +0 -419
- package/dist/LinearWiggleDisplay/model.js +0 -262
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +0 -3
- package/dist/LinearWiggleDisplay/renderSvg.js +0 -16
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +0 -8
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +0 -65
- package/dist/MultiDensityRenderer/configSchema.d.ts +0 -37
- package/dist/MultiDensityRenderer/configSchema.js +0 -13
- package/dist/MultiDensityRenderer/index.d.ts +0 -2
- package/dist/MultiDensityRenderer/index.js +0 -17
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +0 -8
- package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -58
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -49
- package/dist/MultiLineRenderer/configSchema.js +0 -26
- package/dist/MultiLineRenderer/index.d.ts +0 -2
- package/dist/MultiLineRenderer/index.js +0 -17
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -18
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +0 -17
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +0 -15
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +0 -11
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +0 -19
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +0 -8
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +0 -9
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +0 -5
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +0 -19
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -9
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -42
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +0 -130
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +0 -18
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -35
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +0 -6
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +0 -29
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +0 -79
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +0 -145
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.js +0 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -14
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +0 -28
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +0 -13
- package/dist/MultiLinearWiggleDisplay/components/util.js +0 -45
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +0 -84
- package/dist/MultiLinearWiggleDisplay/configSchema.js +0 -44
- package/dist/MultiLinearWiggleDisplay/index.d.ts +0 -2
- package/dist/MultiLinearWiggleDisplay/index.js +0 -57
- package/dist/MultiLinearWiggleDisplay/model.d.ts +0 -436
- package/dist/MultiLinearWiggleDisplay/model.js +0 -413
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +0 -15
- package/dist/MultiLinearWiggleDisplay/types.d.ts +0 -14
- package/dist/MultiLinearWiggleDisplay/types.js +0 -2
- package/dist/MultiLinearWiggleDisplay/util.d.ts +0 -1
- package/dist/MultiLinearWiggleDisplay/util.js +0 -10
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +0 -80
- package/dist/MultiQuantitativeTrack/configSchema.js +0 -11
- package/dist/MultiQuantitativeTrack/index.d.ts +0 -2
- package/dist/MultiQuantitativeTrack/index.js +0 -20
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +0 -8
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +0 -70
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -49
- package/dist/MultiRowLineRenderer/configSchema.js +0 -26
- package/dist/MultiRowLineRenderer/index.d.ts +0 -2
- package/dist/MultiRowLineRenderer/index.js +0 -17
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +0 -8
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +0 -70
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -34
- package/dist/MultiRowXYPlotRenderer/index.d.ts +0 -2
- package/dist/MultiRowXYPlotRenderer/index.js +0 -17
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +0 -30
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -85
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -13
- package/dist/MultiWiggleAdapter/configSchema.js +0 -17
- package/dist/MultiWiggleAdapter/index.d.ts +0 -2
- package/dist/MultiWiggleAdapter/index.js +0 -57
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +0 -5
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +0 -89
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +0 -2
- package/dist/MultiWiggleAddTrackWorkflow/index.js +0 -46
- package/dist/MultiWiggleRendering.d.ts +0 -19
- package/dist/MultiWiggleRendering.js +0 -81
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +0 -8
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -61
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/MultiXYPlotRenderer/configSchema.js +0 -34
- package/dist/MultiXYPlotRenderer/index.d.ts +0 -2
- package/dist/MultiXYPlotRenderer/index.js +0 -17
- package/dist/QuantitativeTrack/configSchema.d.ts +0 -80
- package/dist/QuantitativeTrack/configSchema.js +0 -11
- package/dist/QuantitativeTrack/index.d.ts +0 -2
- package/dist/QuantitativeTrack/index.js +0 -20
- package/dist/Tooltip.d.ts +0 -18
- package/dist/Tooltip.js +0 -34
- package/dist/WiggleBaseRenderer.d.ts +0 -57
- package/dist/WiggleBaseRenderer.js +0 -42
- package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +0 -14
- package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.js +0 -31
- package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +0 -6
- package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.js +0 -22
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +0 -14
- package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -22
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +0 -12
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -22
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +0 -13
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -22
- package/dist/WiggleRPC/getScoreMatrix.d.ts +0 -6
- package/dist/WiggleRPC/getScoreMatrix.js +0 -35
- package/dist/WiggleRPC/rpcMethods.d.ts +0 -5
- package/dist/WiggleRPC/rpcMethods.js +0 -21
- package/dist/WiggleRPC/type.d.ts +0 -0
- package/dist/WiggleRPC/type.js +0 -1
- package/dist/WiggleRPC/types.d.ts +0 -13
- package/dist/WiggleRPC/types.js +0 -2
- package/dist/WiggleRendering.d.ts +0 -14
- package/dist/WiggleRendering.js +0 -35
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +0 -7
- package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -61
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/XYPlotRenderer/configSchema.js +0 -34
- package/dist/XYPlotRenderer/index.d.ts +0 -5
- package/dist/XYPlotRenderer/index.js +0 -24
- package/dist/configSchema.d.ts +0 -37
- package/dist/configSchema.js +0 -47
- package/dist/drawDensity.d.ts +0 -18
- package/dist/drawDensity.js +0 -81
- package/dist/drawLine.d.ts +0 -20
- package/dist/drawLine.js +0 -77
- package/dist/drawXY.d.ts +0 -21
- package/dist/drawXY.js +0 -191
- package/dist/getMultiWiggleSourcesAutorun.d.ts +0 -17
- package/dist/getMultiWiggleSourcesAutorun.js +0 -38
- package/dist/getQuantitativeStats.d.ts +0 -13
- package/dist/getQuantitativeStats.js +0 -70
- package/dist/getQuantitativeStatsAutorun.d.ts +0 -13
- package/dist/getQuantitativeStatsAutorun.js +0 -35
- package/dist/index.d.ts +0 -91
- package/dist/index.js +0 -112
- package/dist/shared/SetMinMaxDialog.d.ts +0 -10
- package/dist/shared/SetMinMaxDialog.js +0 -26
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -66
- package/dist/shared/SharedWiggleConfigSchema.js +0 -56
- package/dist/shared/SharedWiggleMixin.d.ts +0 -405
- package/dist/shared/SharedWiggleMixin.js +0 -343
- package/dist/shared/YScaleBar.d.ts +0 -9
- package/dist/shared/YScaleBar.js +0 -12
- package/dist/util.d.ts +0 -24
- package/dist/util.js +0 -105
- package/esm/WiggleBaseRenderer.d.ts +0 -57
- package/esm/WiggleBaseRenderer.js +0 -36
- package/esm/WiggleRPC/type.d.ts +0 -0
- package/esm/WiggleRPC/type.js +0 -1
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const configuration_1 = require("@jbrowse/core/configuration");
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const colors_1 = require("@jbrowse/core/ui/colors");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const randomColor = () => '#000000'.replaceAll('0', () => (~~(Math.random() * 16)).toString(16));
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const Tooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/Tooltip'))));
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const SetColorDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetColorDialog'))));
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['multirowdensity', 'MultiDensityRenderer'],
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type: mobx_state_tree_1.types.literal('MultiLinearWiggleDisplay'),
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this.rowHeightTooSmallForScalebar);
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adapterProps() {
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displayModel: self,
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config: self.rendererConfig,
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filters: self.filters,
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resolution: self.resolution,
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rpcDriverName: self.rpcDriverName,
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};
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},
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get ticks() {
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const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
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}
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const ticks = (0, react_d3_axis_mod_1.axisPropsFromTickScale)((0, util_2.getScale)({
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scaleType,
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domain,
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range: [rowHeight - offset, offset],
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inverted: (0, configuration_1.getConf)(self, 'inverted'),
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}), 4);
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return useMinimalTicks ? { ...ticks, values: domain } : ticks;
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},
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get colors() {
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return [
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'red',
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'blue',
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'green',
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'orange',
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'purple',
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'cyan',
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'pink',
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'darkblue',
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'darkred',
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'pink',
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];
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},
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get quantitativeStatsRelevantToCurrentZoom() {
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const view = (0, util_1.getContainingView)(self);
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return ((_a = self.stats) === null || _a === void 0 ? void 0 : _a.currStatsBpPerPx) === view.bpPerPx;
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},
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};
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})
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.views(self => ({
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get legendFontSize() {
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return Math.min(self.rowHeight, 12);
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},
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get canDisplayLegendLabels() {
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return self.rowHeight > 11;
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},
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get labelWidth() {
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var _a;
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const minWidth = 20;
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return (0, util_1.max)(((_a = self.sources) === null || _a === void 0 ? void 0 : _a.map(s => (0, util_1.measureText)(s.name, this.legendFontSize)).map(width => (this.canDisplayLegendLabels ? width : minWidth))) ||
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[]);
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},
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renderProps() {
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return {
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...superProps,
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notReady: superProps.notReady || !self.sources || !self.stats,
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displayModel: self,
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rpcDriverName: self.rpcDriverName,
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|
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|
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|
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|
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{
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|
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|
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|
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|
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|
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|
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: []),
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|
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|
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{
|
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|
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|
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|
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onClick: () => {
|
|
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|
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(0, util_1.getSession)(self).queueDialog(handleClose => [
|
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|
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WiggleClusterDialog,
|
|
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{
|
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|
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model: self,
|
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|
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handleClose,
|
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|
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},
|
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|
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]);
|
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|
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},
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|
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|
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{
|
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|
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|
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|
-
type: 'checkbox',
|
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|
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checked: self.showSidebar,
|
|
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|
-
onClick: () => {
|
|
365
|
-
self.setShowSidebar(!self.showSidebar);
|
|
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|
-
},
|
|
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|
-
},
|
|
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|
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{
|
|
369
|
-
label: 'Edit colors/arrangement...',
|
|
370
|
-
onClick: () => {
|
|
371
|
-
(0, util_1.getSession)(self).queueDialog(handleClose => [
|
|
372
|
-
SetColorDialog,
|
|
373
|
-
{
|
|
374
|
-
model: self,
|
|
375
|
-
handleClose,
|
|
376
|
-
},
|
|
377
|
-
]);
|
|
378
|
-
},
|
|
379
|
-
},
|
|
380
|
-
];
|
|
381
|
-
},
|
|
382
|
-
};
|
|
383
|
-
})
|
|
384
|
-
.actions(self => {
|
|
385
|
-
const { renderSvg: superRenderSvg } = self;
|
|
386
|
-
return {
|
|
387
|
-
afterAttach() {
|
|
388
|
-
;
|
|
389
|
-
(async () => {
|
|
390
|
-
try {
|
|
391
|
-
const [{ getMultiWiggleSourcesAutorun }, { getQuantitativeStatsAutorun },] = await Promise.all([
|
|
392
|
-
Promise.resolve().then(() => __importStar(require('../getMultiWiggleSourcesAutorun'))),
|
|
393
|
-
Promise.resolve().then(() => __importStar(require('../getQuantitativeStatsAutorun'))),
|
|
394
|
-
]);
|
|
395
|
-
getQuantitativeStatsAutorun(self);
|
|
396
|
-
getMultiWiggleSourcesAutorun(self);
|
|
397
|
-
}
|
|
398
|
-
catch (e) {
|
|
399
|
-
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
400
|
-
console.error(e);
|
|
401
|
-
(0, util_1.getSession)(self).notifyError(`${e}`, e);
|
|
402
|
-
}
|
|
403
|
-
}
|
|
404
|
-
})();
|
|
405
|
-
},
|
|
406
|
-
async renderSvg(opts) {
|
|
407
|
-
const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
|
|
408
|
-
return renderSvg(self, opts, superRenderSvg);
|
|
409
|
-
},
|
|
410
|
-
};
|
|
411
|
-
});
|
|
412
|
-
}
|
|
413
|
-
exports.default = stateModelFactory;
|
|
@@ -1,3 +0,0 @@
|
|
|
1
|
-
import type { WiggleDisplayModel } from './model';
|
|
2
|
-
import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
3
|
-
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
@@ -1,15 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.renderSvg = renderSvg;
|
|
7
|
-
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
8
|
-
const util_1 = require("@jbrowse/core/util");
|
|
9
|
-
const mobx_1 = require("mobx");
|
|
10
|
-
const YScaleBars_1 = __importDefault(require("./components/YScaleBars"));
|
|
11
|
-
async function renderSvg(self, opts, superRenderSvg) {
|
|
12
|
-
await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
|
|
13
|
-
const { offsetPx } = (0, util_1.getContainingView)(self);
|
|
14
|
-
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("g", { children: await superRenderSvg(opts) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${Math.max(-offsetPx, 0)})`, children: (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }) })] }));
|
|
15
|
-
}
|
|
@@ -1,14 +0,0 @@
|
|
|
1
|
-
export interface Source {
|
|
2
|
-
baseUri?: string;
|
|
3
|
-
name: string;
|
|
4
|
-
label?: string;
|
|
5
|
-
color?: string;
|
|
6
|
-
group?: string;
|
|
7
|
-
HP?: number;
|
|
8
|
-
id?: string;
|
|
9
|
-
[key: string]: unknown;
|
|
10
|
-
}
|
|
11
|
-
export interface SampleInfo {
|
|
12
|
-
isPhased: boolean;
|
|
13
|
-
maxPloidy: number;
|
|
14
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export declare function randomColor(str: string): string;
|
|
@@ -1,10 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.randomColor = randomColor;
|
|
4
|
-
function randomColor(str) {
|
|
5
|
-
let sum = 0;
|
|
6
|
-
for (let i = 0; i < str.length; i++) {
|
|
7
|
-
sum += str.charCodeAt(i);
|
|
8
|
-
}
|
|
9
|
-
return `hsl(${sum * 10}, 20%, 50%)`;
|
|
10
|
-
}
|
|
@@ -1,80 +0,0 @@
|
|
|
1
|
-
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
3
|
-
name: {
|
|
4
|
-
description: string;
|
|
5
|
-
type: string;
|
|
6
|
-
defaultValue: string;
|
|
7
|
-
};
|
|
8
|
-
assemblyNames: {
|
|
9
|
-
description: string;
|
|
10
|
-
type: string;
|
|
11
|
-
defaultValue: string[];
|
|
12
|
-
};
|
|
13
|
-
description: {
|
|
14
|
-
description: string;
|
|
15
|
-
type: string;
|
|
16
|
-
defaultValue: string;
|
|
17
|
-
};
|
|
18
|
-
category: {
|
|
19
|
-
description: string;
|
|
20
|
-
type: string;
|
|
21
|
-
defaultValue: never[];
|
|
22
|
-
};
|
|
23
|
-
metadata: {
|
|
24
|
-
type: string;
|
|
25
|
-
description: string;
|
|
26
|
-
defaultValue: {};
|
|
27
|
-
};
|
|
28
|
-
adapter: import("mobx-state-tree").IAnyModelType;
|
|
29
|
-
textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
30
|
-
indexingAttributes: {
|
|
31
|
-
type: string;
|
|
32
|
-
description: string;
|
|
33
|
-
defaultValue: string[];
|
|
34
|
-
};
|
|
35
|
-
indexingFeatureTypesToExclude: {
|
|
36
|
-
type: string;
|
|
37
|
-
description: string;
|
|
38
|
-
defaultValue: string[];
|
|
39
|
-
};
|
|
40
|
-
textSearchAdapter: import("mobx-state-tree").IAnyModelType;
|
|
41
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
42
|
-
displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
43
|
-
formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
44
|
-
feature: {
|
|
45
|
-
type: string;
|
|
46
|
-
description: string;
|
|
47
|
-
defaultValue: {};
|
|
48
|
-
contextVariable: string[];
|
|
49
|
-
};
|
|
50
|
-
subfeatures: {
|
|
51
|
-
type: string;
|
|
52
|
-
description: string;
|
|
53
|
-
defaultValue: {};
|
|
54
|
-
contextVariable: string[];
|
|
55
|
-
};
|
|
56
|
-
depth: {
|
|
57
|
-
type: string;
|
|
58
|
-
defaultValue: number;
|
|
59
|
-
description: string;
|
|
60
|
-
};
|
|
61
|
-
maxDepth: {
|
|
62
|
-
type: string;
|
|
63
|
-
defaultValue: number;
|
|
64
|
-
description: string;
|
|
65
|
-
};
|
|
66
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
67
|
-
formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
68
|
-
config: {
|
|
69
|
-
type: string;
|
|
70
|
-
description: string;
|
|
71
|
-
defaultValue: {};
|
|
72
|
-
contextVariable: string[];
|
|
73
|
-
};
|
|
74
|
-
hideUris: {
|
|
75
|
-
type: string;
|
|
76
|
-
defaultValue: boolean;
|
|
77
|
-
};
|
|
78
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
79
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
|
|
80
|
-
export default configSchema;
|
|
@@ -1,11 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
-
const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
|
|
5
|
-
function x() { }
|
|
6
|
-
const configSchema = (pluginManager) => {
|
|
7
|
-
return (0, configuration_1.ConfigurationSchema)('MultiQuantitativeTrack', {}, {
|
|
8
|
-
baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
|
|
9
|
-
});
|
|
10
|
-
};
|
|
11
|
-
exports.default = configSchema;
|
|
@@ -1,20 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.default = MultiQuantitativeTrackF;
|
|
7
|
-
const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
|
|
8
|
-
const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
|
|
9
|
-
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
10
|
-
function MultiQuantitativeTrackF(pluginManager) {
|
|
11
|
-
pluginManager.addTrackType(() => {
|
|
12
|
-
const configSchema = (0, configSchema_1.default)(pluginManager);
|
|
13
|
-
return new TrackType_1.default({
|
|
14
|
-
name: 'MultiQuantitativeTrack',
|
|
15
|
-
displayName: 'Multi-quantitative track',
|
|
16
|
-
configSchema,
|
|
17
|
-
stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
|
|
18
|
-
});
|
|
19
|
-
});
|
|
20
|
-
}
|
|
@@ -1,8 +0,0 @@
|
|
|
1
|
-
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
-
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
-
import type { Feature } from '@jbrowse/core/util';
|
|
4
|
-
export default class MultiRowLineRenderer extends WiggleBaseRenderer {
|
|
5
|
-
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
6
|
-
reducedFeatures: Feature[];
|
|
7
|
-
}>;
|
|
8
|
-
}
|
|
@@ -1,70 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
-
if (k2 === undefined) k2 = k;
|
|
4
|
-
var desc = Object.getOwnPropertyDescriptor(m, k);
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5
|
-
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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6
|
-
desc = { enumerable: true, get: function() { return m[k]; } };
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7
|
-
}
|
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8
|
-
Object.defineProperty(o, k2, desc);
|
|
9
|
-
}) : (function(o, m, k, k2) {
|
|
10
|
-
if (k2 === undefined) k2 = k;
|
|
11
|
-
o[k2] = m[k];
|
|
12
|
-
}));
|
|
13
|
-
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
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14
|
-
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
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15
|
-
}) : function(o, v) {
|
|
16
|
-
o["default"] = v;
|
|
17
|
-
});
|
|
18
|
-
var __importStar = (this && this.__importStar) || (function () {
|
|
19
|
-
var ownKeys = function(o) {
|
|
20
|
-
ownKeys = Object.getOwnPropertyNames || function (o) {
|
|
21
|
-
var ar = [];
|
|
22
|
-
for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
|
|
23
|
-
return ar;
|
|
24
|
-
};
|
|
25
|
-
return ownKeys(o);
|
|
26
|
-
};
|
|
27
|
-
return function (mod) {
|
|
28
|
-
if (mod && mod.__esModule) return mod;
|
|
29
|
-
var result = {};
|
|
30
|
-
if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
|
|
31
|
-
__setModuleDefault(result, mod);
|
|
32
|
-
return result;
|
|
33
|
-
};
|
|
34
|
-
})();
|
|
35
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
36
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
37
|
-
};
|
|
38
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
39
|
-
const util_1 = require("@jbrowse/core/util");
|
|
40
|
-
const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
|
|
41
|
-
class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
|
|
42
|
-
async draw(ctx, props) {
|
|
43
|
-
const { stopToken, bpPerPx, sources, regions, features } = props;
|
|
44
|
-
const region = regions[0];
|
|
45
|
-
const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
|
|
46
|
-
const height = props.height / sources.length;
|
|
47
|
-
const width = (region.end - region.start) / bpPerPx;
|
|
48
|
-
const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
|
|
49
|
-
let feats = [];
|
|
50
|
-
ctx.save();
|
|
51
|
-
(0, util_1.forEachWithStopTokenCheck)(sources, stopToken, source => {
|
|
52
|
-
const { reducedFeatures } = drawLine(ctx, {
|
|
53
|
-
...props,
|
|
54
|
-
features: groups[source.name] || [],
|
|
55
|
-
height,
|
|
56
|
-
colorCallback: () => source.color || 'blue',
|
|
57
|
-
});
|
|
58
|
-
ctx.strokeStyle = 'rgba(200,200,200,0.8)';
|
|
59
|
-
ctx.beginPath();
|
|
60
|
-
ctx.moveTo(0, height);
|
|
61
|
-
ctx.lineTo(width, height);
|
|
62
|
-
ctx.stroke();
|
|
63
|
-
ctx.translate(0, height);
|
|
64
|
-
feats = feats.concat(reducedFeatures);
|
|
65
|
-
});
|
|
66
|
-
ctx.restore();
|
|
67
|
-
return { reducedFeatures: feats };
|
|
68
|
-
}
|
|
69
|
-
}
|
|
70
|
-
exports.default = MultiRowLineRenderer;
|