@jbrowse/plugin-wiggle 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (407) hide show
  1. package/esm/BigWigAdapter/BigWigAdapter.d.ts +14 -1
  2. package/esm/BigWigAdapter/BigWigAdapter.js +118 -22
  3. package/esm/BigWigAdapter/configSchema.d.ts +2 -2
  4. package/esm/BigWigAdapter/configSchema.js +1 -1
  5. package/esm/BigWigAdapter/index.js +2 -2
  6. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
  7. package/esm/CreateMultiWiggleExtension/index.js +2 -2
  8. package/esm/DensityRenderer/DensityRenderer.d.ts +5 -6
  9. package/esm/DensityRenderer/DensityRenderer.js +6 -5
  10. package/esm/DensityRenderer/configSchema.d.ts +3 -3
  11. package/esm/DensityRenderer/configSchema.js +1 -1
  12. package/esm/DensityRenderer/index.js +11 -9
  13. package/esm/DensityRenderer/makeImageData.d.ts +3 -0
  14. package/esm/DensityRenderer/makeImageData.js +13 -0
  15. package/esm/DensityRenderer/renderDensity.d.ts +3 -0
  16. package/esm/DensityRenderer/renderDensity.js +18 -0
  17. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +5 -7
  18. package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -15
  19. package/esm/LinePlotRenderer/configSchema.d.ts +4 -4
  20. package/esm/LinePlotRenderer/configSchema.js +1 -1
  21. package/esm/LinePlotRenderer/index.js +4 -4
  22. package/esm/LinePlotRenderer/makeImageData.d.ts +3 -0
  23. package/esm/LinePlotRenderer/makeImageData.js +13 -0
  24. package/esm/LinePlotRenderer/renderLinePlot.d.ts +3 -0
  25. package/esm/LinePlotRenderer/renderLinePlot.js +23 -0
  26. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  27. package/esm/LinearWiggleDisplay/components/Tooltip.js +10 -6
  28. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  29. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  30. package/esm/LinearWiggleDisplay/configSchema.d.ts +9 -9
  31. package/esm/LinearWiggleDisplay/configSchema.js +2 -2
  32. package/esm/LinearWiggleDisplay/index.d.ts +3 -3
  33. package/esm/LinearWiggleDisplay/index.js +6 -6
  34. package/esm/LinearWiggleDisplay/model.d.ts +1130 -92
  35. package/esm/LinearWiggleDisplay/model.js +58 -18
  36. package/esm/LinearWiggleDisplay/renderSvg.d.ts +1 -1
  37. package/esm/LinearWiggleDisplay/renderSvg.js +3 -2
  38. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +5 -7
  39. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +6 -24
  40. package/esm/MultiDensityRenderer/configSchema.d.ts +3 -3
  41. package/esm/MultiDensityRenderer/configSchema.js +1 -1
  42. package/esm/MultiDensityRenderer/index.js +4 -4
  43. package/esm/MultiDensityRenderer/makeImageData.d.ts +3 -0
  44. package/esm/MultiDensityRenderer/makeImageData.js +7 -0
  45. package/esm/MultiDensityRenderer/renderMultiDensity.d.ts +3 -0
  46. package/esm/MultiDensityRenderer/renderMultiDensity.js +37 -0
  47. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +5 -7
  48. package/esm/MultiLineRenderer/MultiLineRenderer.js +6 -17
  49. package/esm/MultiLineRenderer/configSchema.d.ts +5 -5
  50. package/esm/MultiLineRenderer/configSchema.js +2 -2
  51. package/esm/MultiLineRenderer/index.js +4 -4
  52. package/esm/MultiLineRenderer/makeImageData.d.ts +3 -0
  53. package/esm/MultiLineRenderer/makeImageData.js +7 -0
  54. package/esm/MultiLineRenderer/renderMultiLine.d.ts +3 -0
  55. package/esm/MultiLineRenderer/renderMultiLine.js +34 -0
  56. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +2 -2
  57. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +11 -5
  58. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +1 -1
  59. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +4 -4
  60. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +1 -1
  61. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +5 -5
  62. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +3 -3
  63. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +2 -4
  64. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +12 -0
  65. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.js +11 -0
  66. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -1
  67. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +4 -3
  68. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -2
  69. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -3
  70. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
  71. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -34
  72. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
  73. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +3 -3
  74. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -4
  75. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +15 -12
  76. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +1 -1
  77. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +3 -3
  78. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +1 -1
  79. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +13 -6
  80. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +1 -1
  81. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +24 -21
  82. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +2 -1
  83. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  84. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  85. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -2
  86. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +5 -16
  87. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.d.ts +7 -0
  88. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.js +15 -0
  89. package/esm/MultiLinearWiggleDisplay/components/types.d.ts +10 -0
  90. package/esm/MultiLinearWiggleDisplay/components/types.js +1 -0
  91. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.d.ts +31 -0
  92. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +45 -0
  93. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.d.ts +10 -0
  94. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +81 -0
  95. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.d.ts +1 -0
  96. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.js +4 -0
  97. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.d.ts +10 -0
  98. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.js +39 -0
  99. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +5 -9
  100. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +9 -9
  101. package/esm/MultiLinearWiggleDisplay/configSchema.js +2 -2
  102. package/esm/MultiLinearWiggleDisplay/index.js +3 -3
  103. package/esm/MultiLinearWiggleDisplay/model.d.ts +3628 -93
  104. package/esm/MultiLinearWiggleDisplay/model.js +80 -50
  105. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +1 -1
  106. package/esm/MultiLinearWiggleDisplay/renderSvg.js +3 -2
  107. package/esm/MultiLinearWiggleDisplay/types.d.ts +1 -0
  108. package/esm/MultiLinearWiggleDisplay/util.d.ts +0 -1
  109. package/esm/MultiLinearWiggleDisplay/util.js +1 -7
  110. package/esm/MultiQuantitativeTrack/configSchema.d.ts +16 -11
  111. package/esm/MultiQuantitativeTrack/index.js +13 -2
  112. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +5 -7
  113. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +6 -29
  114. package/esm/MultiRowLineRenderer/configSchema.d.ts +5 -5
  115. package/esm/MultiRowLineRenderer/configSchema.js +2 -2
  116. package/esm/MultiRowLineRenderer/index.js +4 -4
  117. package/esm/MultiRowLineRenderer/makeImageData.d.ts +3 -0
  118. package/esm/MultiRowLineRenderer/makeImageData.js +7 -0
  119. package/esm/MultiRowLineRenderer/renderMultiRowLine.d.ts +3 -0
  120. package/esm/MultiRowLineRenderer/renderMultiRowLine.js +44 -0
  121. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +5 -7
  122. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +6 -29
  123. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +5 -5
  124. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -2
  125. package/esm/MultiRowXYPlotRenderer/index.js +4 -4
  126. package/esm/MultiRowXYPlotRenderer/makeImageData.d.ts +3 -0
  127. package/esm/MultiRowXYPlotRenderer/makeImageData.js +7 -0
  128. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.d.ts +3 -0
  129. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.js +42 -0
  130. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +7 -1
  131. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +81 -26
  132. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -2
  133. package/esm/MultiWiggleAdapter/index.js +2 -2
  134. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
  135. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +4 -5
  136. package/esm/MultiWiggleAddTrackWorkflow/index.js +2 -2
  137. package/esm/MultiWiggleRendering.d.ts +7 -7
  138. package/esm/MultiWiggleRendering.js +9 -7
  139. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +5 -7
  140. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +6 -20
  141. package/esm/MultiXYPlotRenderer/configSchema.d.ts +5 -5
  142. package/esm/MultiXYPlotRenderer/configSchema.js +2 -2
  143. package/esm/MultiXYPlotRenderer/index.js +4 -4
  144. package/esm/MultiXYPlotRenderer/makeImageData.d.ts +3 -0
  145. package/esm/MultiXYPlotRenderer/makeImageData.js +7 -0
  146. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.d.ts +3 -0
  147. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.js +35 -0
  148. package/esm/QuantitativeTrack/configSchema.d.ts +16 -11
  149. package/esm/QuantitativeTrack/index.js +13 -2
  150. package/esm/SVGErrorBox.d.ts +5 -0
  151. package/esm/SVGErrorBox.js +4 -0
  152. package/esm/Tooltip.d.ts +1 -3
  153. package/esm/Tooltip.js +7 -7
  154. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +2 -10
  155. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.js +3 -15
  156. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +1 -1
  157. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js +2 -5
  158. package/esm/WiggleRPC/MultiWiggleGetSources.js +1 -4
  159. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +1 -4
  160. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +10 -0
  161. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +26 -5
  162. package/esm/WiggleRPC/executeClusterScoreMatrix.d.ts +6 -0
  163. package/esm/WiggleRPC/executeClusterScoreMatrix.js +15 -0
  164. package/esm/WiggleRPC/getScoreMatrix.d.ts +1 -1
  165. package/esm/WiggleRPC/getScoreMatrix.js +9 -6
  166. package/esm/WiggleRPC/rpcMethods.d.ts +5 -5
  167. package/esm/WiggleRPC/rpcMethods.js +5 -5
  168. package/esm/WiggleRPC/types.d.ts +1 -1
  169. package/esm/WiggleRendering.d.ts +2 -3
  170. package/esm/WiggleRendering.js +16 -3
  171. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +5 -6
  172. package/esm/XYPlotRenderer/XYPlotRenderer.js +6 -20
  173. package/esm/XYPlotRenderer/configSchema.d.ts +5 -5
  174. package/esm/XYPlotRenderer/configSchema.js +2 -2
  175. package/esm/XYPlotRenderer/index.d.ts +3 -3
  176. package/esm/XYPlotRenderer/index.js +14 -12
  177. package/esm/XYPlotRenderer/makeImageData.d.ts +3 -0
  178. package/esm/XYPlotRenderer/makeImageData.js +13 -0
  179. package/esm/XYPlotRenderer/renderXYPlot.d.ts +3 -0
  180. package/esm/XYPlotRenderer/renderXYPlot.js +23 -0
  181. package/esm/configSchema.d.ts +3 -3
  182. package/esm/configSchema.js +1 -1
  183. package/esm/drawDensity.d.ts +4 -2
  184. package/esm/drawDensity.js +25 -15
  185. package/esm/drawLine.d.ts +5 -3
  186. package/esm/drawLine.js +118 -41
  187. package/esm/drawXY.d.ts +4 -2
  188. package/esm/drawXY.js +75 -36
  189. package/esm/getMultiWiggleSourcesAutorun.d.ts +4 -2
  190. package/esm/getMultiWiggleSourcesAutorun.js +7 -2
  191. package/esm/getQuantitativeStats.d.ts +4 -2
  192. package/esm/getQuantitativeStats.js +18 -7
  193. package/esm/getQuantitativeStatsAutorun.d.ts +3 -2
  194. package/esm/getQuantitativeStatsAutorun.js +3 -3
  195. package/esm/index.d.ts +15 -19
  196. package/esm/index.js +31 -37
  197. package/esm/multiRendererHelper.d.ts +7 -0
  198. package/esm/multiRendererHelper.js +12 -0
  199. package/esm/saveTrackFormats/bedGraph.d.ts +4 -0
  200. package/esm/saveTrackFormats/bedGraph.js +11 -0
  201. package/esm/shared/SharedWiggleConfigSchema.d.ts +5 -5
  202. package/esm/shared/SharedWiggleConfigSchema.js +1 -1
  203. package/esm/shared/SharedWiggleMixin.d.ts +1083 -120
  204. package/esm/shared/SharedWiggleMixin.js +48 -26
  205. package/esm/shared/YScaleBar.d.ts +1 -1
  206. package/esm/shared/YScaleBar.js +16 -4
  207. package/esm/shared/axisPropsFromTickScale.d.ts +7 -0
  208. package/esm/shared/axisPropsFromTickScale.js +12 -0
  209. package/esm/svgExportUtil.d.ts +9 -0
  210. package/esm/svgExportUtil.js +6 -0
  211. package/esm/types.d.ts +24 -0
  212. package/esm/types.js +1 -0
  213. package/esm/util.d.ts +35 -1
  214. package/esm/util.js +61 -2
  215. package/package.json +35 -38
  216. package/dist/BigWigAdapter/BigWigAdapter.d.ts +0 -25
  217. package/dist/BigWigAdapter/BigWigAdapter.js +0 -81
  218. package/dist/BigWigAdapter/configSchema.d.ts +0 -20
  219. package/dist/BigWigAdapter/configSchema.js +0 -37
  220. package/dist/BigWigAdapter/index.d.ts +0 -2
  221. package/dist/BigWigAdapter/index.js +0 -54
  222. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -8
  223. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -26
  224. package/dist/CreateMultiWiggleExtension/index.d.ts +0 -2
  225. package/dist/CreateMultiWiggleExtension/index.js +0 -95
  226. package/dist/DensityRenderer/DensityRenderer.d.ts +0 -7
  227. package/dist/DensityRenderer/DensityRenderer.js +0 -46
  228. package/dist/DensityRenderer/configSchema.d.ts +0 -37
  229. package/dist/DensityRenderer/configSchema.js +0 -13
  230. package/dist/DensityRenderer/index.d.ts +0 -2
  231. package/dist/DensityRenderer/index.js +0 -17
  232. package/dist/GuessAdapter/index.d.ts +0 -2
  233. package/dist/GuessAdapter/index.js +0 -25
  234. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +0 -8
  235. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -56
  236. package/dist/LinePlotRenderer/configSchema.d.ts +0 -43
  237. package/dist/LinePlotRenderer/configSchema.js +0 -19
  238. package/dist/LinePlotRenderer/index.d.ts +0 -2
  239. package/dist/LinePlotRenderer/index.js +0 -17
  240. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -12
  241. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -31
  242. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +0 -15
  243. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -32
  244. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  245. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -28
  246. package/dist/LinearWiggleDisplay/configSchema.d.ts +0 -78
  247. package/dist/LinearWiggleDisplay/configSchema.js +0 -29
  248. package/dist/LinearWiggleDisplay/index.d.ts +0 -5
  249. package/dist/LinearWiggleDisplay/index.js +0 -65
  250. package/dist/LinearWiggleDisplay/model.d.ts +0 -419
  251. package/dist/LinearWiggleDisplay/model.js +0 -262
  252. package/dist/LinearWiggleDisplay/renderSvg.d.ts +0 -3
  253. package/dist/LinearWiggleDisplay/renderSvg.js +0 -16
  254. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +0 -8
  255. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +0 -65
  256. package/dist/MultiDensityRenderer/configSchema.d.ts +0 -37
  257. package/dist/MultiDensityRenderer/configSchema.js +0 -13
  258. package/dist/MultiDensityRenderer/index.d.ts +0 -2
  259. package/dist/MultiDensityRenderer/index.js +0 -17
  260. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +0 -8
  261. package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -58
  262. package/dist/MultiLineRenderer/configSchema.d.ts +0 -49
  263. package/dist/MultiLineRenderer/configSchema.js +0 -26
  264. package/dist/MultiLineRenderer/index.d.ts +0 -2
  265. package/dist/MultiLineRenderer/index.js +0 -17
  266. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +0 -7
  267. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -18
  268. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +0 -7
  269. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +0 -17
  270. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +0 -7
  271. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +0 -15
  272. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +0 -11
  273. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +0 -19
  274. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +0 -8
  275. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +0 -9
  276. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +0 -5
  277. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +0 -19
  278. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -9
  279. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -42
  280. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +0 -7
  281. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +0 -130
  282. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +0 -18
  283. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -35
  284. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +0 -6
  285. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +0 -29
  286. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +0 -7
  287. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +0 -79
  288. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +0 -7
  289. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +0 -145
  290. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +0 -7
  291. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.js +0 -2
  292. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  293. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -14
  294. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +0 -7
  295. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +0 -28
  296. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +0 -13
  297. package/dist/MultiLinearWiggleDisplay/components/util.js +0 -45
  298. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +0 -84
  299. package/dist/MultiLinearWiggleDisplay/configSchema.js +0 -44
  300. package/dist/MultiLinearWiggleDisplay/index.d.ts +0 -2
  301. package/dist/MultiLinearWiggleDisplay/index.js +0 -57
  302. package/dist/MultiLinearWiggleDisplay/model.d.ts +0 -436
  303. package/dist/MultiLinearWiggleDisplay/model.js +0 -413
  304. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +0 -3
  305. package/dist/MultiLinearWiggleDisplay/renderSvg.js +0 -15
  306. package/dist/MultiLinearWiggleDisplay/types.d.ts +0 -14
  307. package/dist/MultiLinearWiggleDisplay/types.js +0 -2
  308. package/dist/MultiLinearWiggleDisplay/util.d.ts +0 -1
  309. package/dist/MultiLinearWiggleDisplay/util.js +0 -10
  310. package/dist/MultiQuantitativeTrack/configSchema.d.ts +0 -80
  311. package/dist/MultiQuantitativeTrack/configSchema.js +0 -11
  312. package/dist/MultiQuantitativeTrack/index.d.ts +0 -2
  313. package/dist/MultiQuantitativeTrack/index.js +0 -20
  314. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +0 -8
  315. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +0 -70
  316. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -49
  317. package/dist/MultiRowLineRenderer/configSchema.js +0 -26
  318. package/dist/MultiRowLineRenderer/index.d.ts +0 -2
  319. package/dist/MultiRowLineRenderer/index.js +0 -17
  320. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +0 -8
  321. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +0 -70
  322. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -57
  323. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -34
  324. package/dist/MultiRowXYPlotRenderer/index.d.ts +0 -2
  325. package/dist/MultiRowXYPlotRenderer/index.js +0 -17
  326. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +0 -30
  327. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -85
  328. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -13
  329. package/dist/MultiWiggleAdapter/configSchema.js +0 -17
  330. package/dist/MultiWiggleAdapter/index.d.ts +0 -2
  331. package/dist/MultiWiggleAdapter/index.js +0 -57
  332. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +0 -5
  333. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +0 -89
  334. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +0 -2
  335. package/dist/MultiWiggleAddTrackWorkflow/index.js +0 -46
  336. package/dist/MultiWiggleRendering.d.ts +0 -19
  337. package/dist/MultiWiggleRendering.js +0 -81
  338. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +0 -8
  339. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -61
  340. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -57
  341. package/dist/MultiXYPlotRenderer/configSchema.js +0 -34
  342. package/dist/MultiXYPlotRenderer/index.d.ts +0 -2
  343. package/dist/MultiXYPlotRenderer/index.js +0 -17
  344. package/dist/QuantitativeTrack/configSchema.d.ts +0 -80
  345. package/dist/QuantitativeTrack/configSchema.js +0 -11
  346. package/dist/QuantitativeTrack/index.d.ts +0 -2
  347. package/dist/QuantitativeTrack/index.js +0 -20
  348. package/dist/Tooltip.d.ts +0 -18
  349. package/dist/Tooltip.js +0 -34
  350. package/dist/WiggleBaseRenderer.d.ts +0 -57
  351. package/dist/WiggleBaseRenderer.js +0 -42
  352. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +0 -14
  353. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.js +0 -31
  354. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +0 -6
  355. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.js +0 -22
  356. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +0 -14
  357. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -22
  358. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +0 -12
  359. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -22
  360. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +0 -13
  361. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -22
  362. package/dist/WiggleRPC/getScoreMatrix.d.ts +0 -6
  363. package/dist/WiggleRPC/getScoreMatrix.js +0 -35
  364. package/dist/WiggleRPC/rpcMethods.d.ts +0 -5
  365. package/dist/WiggleRPC/rpcMethods.js +0 -21
  366. package/dist/WiggleRPC/type.d.ts +0 -0
  367. package/dist/WiggleRPC/type.js +0 -1
  368. package/dist/WiggleRPC/types.d.ts +0 -13
  369. package/dist/WiggleRPC/types.js +0 -2
  370. package/dist/WiggleRendering.d.ts +0 -14
  371. package/dist/WiggleRendering.js +0 -35
  372. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +0 -7
  373. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -61
  374. package/dist/XYPlotRenderer/configSchema.d.ts +0 -57
  375. package/dist/XYPlotRenderer/configSchema.js +0 -34
  376. package/dist/XYPlotRenderer/index.d.ts +0 -5
  377. package/dist/XYPlotRenderer/index.js +0 -24
  378. package/dist/configSchema.d.ts +0 -37
  379. package/dist/configSchema.js +0 -47
  380. package/dist/drawDensity.d.ts +0 -18
  381. package/dist/drawDensity.js +0 -81
  382. package/dist/drawLine.d.ts +0 -20
  383. package/dist/drawLine.js +0 -77
  384. package/dist/drawXY.d.ts +0 -21
  385. package/dist/drawXY.js +0 -191
  386. package/dist/getMultiWiggleSourcesAutorun.d.ts +0 -17
  387. package/dist/getMultiWiggleSourcesAutorun.js +0 -38
  388. package/dist/getQuantitativeStats.d.ts +0 -13
  389. package/dist/getQuantitativeStats.js +0 -70
  390. package/dist/getQuantitativeStatsAutorun.d.ts +0 -13
  391. package/dist/getQuantitativeStatsAutorun.js +0 -35
  392. package/dist/index.d.ts +0 -91
  393. package/dist/index.js +0 -112
  394. package/dist/shared/SetMinMaxDialog.d.ts +0 -10
  395. package/dist/shared/SetMinMaxDialog.js +0 -26
  396. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -66
  397. package/dist/shared/SharedWiggleConfigSchema.js +0 -56
  398. package/dist/shared/SharedWiggleMixin.d.ts +0 -405
  399. package/dist/shared/SharedWiggleMixin.js +0 -343
  400. package/dist/shared/YScaleBar.d.ts +0 -9
  401. package/dist/shared/YScaleBar.js +0 -12
  402. package/dist/util.d.ts +0 -24
  403. package/dist/util.js +0 -105
  404. package/esm/WiggleBaseRenderer.d.ts +0 -57
  405. package/esm/WiggleBaseRenderer.js +0 -36
  406. package/esm/WiggleRPC/type.d.ts +0 -0
  407. package/esm/WiggleRPC/type.js +0 -1
@@ -1,413 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
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- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
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- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
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- __setModuleDefault(result, mod);
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- return result;
33
- };
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- })();
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- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
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- Object.defineProperty(exports, "__esModule", { value: true });
39
- exports.stateModelFactory = stateModelFactory;
40
- const react_1 = require("react");
41
- const configuration_1 = require("@jbrowse/core/configuration");
42
- const colors_1 = require("@jbrowse/core/ui/colors");
43
- const util_1 = require("@jbrowse/core/util");
44
- const stopToken_1 = require("@jbrowse/core/util/stopToken");
45
- const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
46
- const mobx_state_tree_1 = require("mobx-state-tree");
47
- const react_d3_axis_mod_1 = require("react-d3-axis-mod");
48
- const SharedWiggleMixin_1 = __importDefault(require("../shared/SharedWiggleMixin"));
49
- const util_2 = require("../util");
50
- const randomColor = () => '#000000'.replaceAll('0', () => (~~(Math.random() * 16)).toString(16));
51
- const Tooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/Tooltip'))));
52
- const SetColorDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetColorDialog'))));
53
- const WiggleClusterDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleClusterDialog/WiggleClusterDialog'))));
54
- const rendererTypes = new Map([
55
- ['xyplot', 'MultiXYPlotRenderer'],
56
- ['multirowxy', 'MultiRowXYPlotRenderer'],
57
- ['multirowdensity', 'MultiDensityRenderer'],
58
- ['multiline', 'MultiLineRenderer'],
59
- ['multirowline', 'MultiRowLineRenderer'],
60
- ]);
61
- function stateModelFactory(_pluginManager, configSchema) {
62
- return mobx_state_tree_1.types
63
- .compose('MultiLinearWiggleDisplay', (0, SharedWiggleMixin_1.default)(configSchema), mobx_state_tree_1.types.model({
64
- type: mobx_state_tree_1.types.literal('MultiLinearWiggleDisplay'),
65
- layout: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.frozen(), []),
66
- showSidebar: true,
67
- }))
68
- .volatile(() => ({
69
- sourcesLoadingStopToken: undefined,
70
- featureUnderMouseVolatile: undefined,
71
- sourcesVolatile: undefined,
72
- }))
73
- .actions(self => ({
74
- setShowSidebar(arg) {
75
- self.showSidebar = arg;
76
- },
77
- setSourcesLoading(str) {
78
- if (self.sourcesLoadingStopToken) {
79
- (0, stopToken_1.stopStopToken)(self.sourcesLoadingStopToken);
80
- }
81
- self.sourcesLoadingStopToken = str;
82
- },
83
- setLayout(layout) {
84
- self.layout = layout;
85
- },
86
- clearLayout() {
87
- self.layout = [];
88
- },
89
- setSources(sources) {
90
- if (!(0, fast_deep_equal_1.default)(sources, self.sourcesVolatile)) {
91
- self.sourcesVolatile = sources;
92
- }
93
- },
94
- setFeatureUnderMouse(f) {
95
- self.featureUnderMouseVolatile = f;
96
- },
97
- }))
98
- .views(self => ({
99
- get featureUnderMouse() {
100
- return self.featureUnderMouseVolatile;
101
- },
102
- get TooltipComponent() {
103
- return Tooltip;
104
- },
105
- get rendererTypeName() {
106
- const name = self.rendererTypeNameSimple;
107
- const rendererType = rendererTypes.get(name);
108
- if (!rendererType) {
109
- throw new Error(`unknown renderer ${name}`);
110
- }
111
- return rendererType;
112
- },
113
- }))
114
- .views(self => ({
115
- get graphType() {
116
- return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
117
- self.rendererTypeName === 'MultiRowXYPlotRenderer' ||
118
- self.rendererTypeName === 'MultiLineRenderer' ||
119
- self.rendererTypeName === 'MultiRowLineRenderer');
120
- },
121
- get needsFullHeightScalebar() {
122
- return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
123
- self.rendererTypeName === 'MultiLineRenderer');
124
- },
125
- get isMultiRow() {
126
- return (self.rendererTypeName === 'MultiRowXYPlotRenderer' ||
127
- self.rendererTypeName === 'MultiRowLineRenderer' ||
128
- self.rendererTypeName === 'MultiDensityRenderer');
129
- },
130
- get needsCustomLegend() {
131
- return self.rendererTypeName === 'MultiDensityRenderer';
132
- },
133
- get canHaveFill() {
134
- return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
135
- self.rendererTypeName === 'MultiRowXYPlotRenderer');
136
- },
137
- get renderColorBoxes() {
138
- return !(self.rendererTypeName === 'MultiRowLineRenderer' ||
139
- self.rendererTypeName === 'MultiRowXYPlotRenderer');
140
- },
141
- get prefersOffset() {
142
- return this.isMultiRow;
143
- },
144
- get sourcesWithoutLayout() {
145
- var _a;
146
- const sources = Object.fromEntries(((_a = self.sourcesVolatile) === null || _a === void 0 ? void 0 : _a.map(s => [s.name, s])) || []);
147
- const iter = self.sourcesVolatile;
148
- return iter === null || iter === void 0 ? void 0 : iter.map(s => ({
149
- ...sources[s.name],
150
- ...s,
151
- })).map((s, i) => ({
152
- ...s,
153
- color: s.color ||
154
- (!this.isMultiRow ? colors_1.set1[i] || randomColor() : 'blue'),
155
- }));
156
- },
157
- get sources() {
158
- var _a;
159
- const sources = Object.fromEntries(((_a = self.sourcesVolatile) === null || _a === void 0 ? void 0 : _a.map(s => [s.name, s])) || []);
160
- const iter = self.layout.length ? self.layout : self.sourcesVolatile;
161
- return iter === null || iter === void 0 ? void 0 : iter.map(s => ({
162
- ...sources[s.name],
163
- ...s,
164
- })).map((s, i) => ({
165
- ...s,
166
- color: s.color ||
167
- (!this.isMultiRow ? colors_1.set1[i] || randomColor() : 'blue'),
168
- }));
169
- },
170
- get quantitativeStatsReady() {
171
- const view = (0, util_1.getContainingView)(self);
172
- return (view.initialized && self.statsReadyAndRegionNotTooLarge && !self.error);
173
- },
174
- }))
175
- .views(self => ({
176
- get rowHeight() {
177
- const { sources, height, isMultiRow } = self;
178
- return isMultiRow ? height / ((sources === null || sources === void 0 ? void 0 : sources.length) || 1) : height;
179
- },
180
- get rowHeightTooSmallForScalebar() {
181
- return this.rowHeight < 70;
182
- },
183
- get useMinimalTicks() {
184
- return ((0, configuration_1.getConf)(self, 'minimalTicks') ||
185
- this.rowHeightTooSmallForScalebar);
186
- },
187
- }))
188
- .views(self => {
189
- const { renderProps: superRenderProps } = self;
190
- return {
191
- adapterProps() {
192
- const superProps = superRenderProps();
193
- return {
194
- ...superProps,
195
- displayModel: self,
196
- config: self.rendererConfig,
197
- filters: self.filters,
198
- resolution: self.resolution,
199
- rpcDriverName: self.rpcDriverName,
200
- sources: self.sources,
201
- };
202
- },
203
- get ticks() {
204
- const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
205
- if (!domain) {
206
- return undefined;
207
- }
208
- const offset = isMultiRow ? 0 : util_2.YSCALEBAR_LABEL_OFFSET;
209
- const ticks = (0, react_d3_axis_mod_1.axisPropsFromTickScale)((0, util_2.getScale)({
210
- scaleType,
211
- domain,
212
- range: [rowHeight - offset, offset],
213
- inverted: (0, configuration_1.getConf)(self, 'inverted'),
214
- }), 4);
215
- return useMinimalTicks ? { ...ticks, values: domain } : ticks;
216
- },
217
- get colors() {
218
- return [
219
- 'red',
220
- 'blue',
221
- 'green',
222
- 'orange',
223
- 'purple',
224
- 'cyan',
225
- 'pink',
226
- 'darkblue',
227
- 'darkred',
228
- 'pink',
229
- ];
230
- },
231
- get quantitativeStatsRelevantToCurrentZoom() {
232
- var _a;
233
- const view = (0, util_1.getContainingView)(self);
234
- return ((_a = self.stats) === null || _a === void 0 ? void 0 : _a.currStatsBpPerPx) === view.bpPerPx;
235
- },
236
- };
237
- })
238
- .views(self => ({
239
- get legendFontSize() {
240
- return Math.min(self.rowHeight, 12);
241
- },
242
- get canDisplayLegendLabels() {
243
- return self.rowHeight > 11;
244
- },
245
- get labelWidth() {
246
- var _a;
247
- const minWidth = 20;
248
- return (0, util_1.max)(((_a = self.sources) === null || _a === void 0 ? void 0 : _a.map(s => (0, util_1.measureText)(s.name, this.legendFontSize)).map(width => (this.canDisplayLegendLabels ? width : minWidth))) ||
249
- []);
250
- },
251
- renderProps() {
252
- const superProps = self.adapterProps();
253
- return {
254
- ...superProps,
255
- notReady: superProps.notReady || !self.sources || !self.stats,
256
- displayModel: self,
257
- rpcDriverName: self.rpcDriverName,
258
- displayCrossHatches: self.displayCrossHatches,
259
- height: self.height,
260
- ticks: self.ticks,
261
- stats: self.stats,
262
- scaleOpts: self.scaleOpts,
263
- onMouseMove: (_, f) => {
264
- self.setFeatureUnderMouse(f);
265
- },
266
- onMouseLeave: () => {
267
- self.setFeatureUnderMouse(undefined);
268
- },
269
- };
270
- },
271
- get hasResolution() {
272
- return self.adapterCapabilities.includes('hasResolution');
273
- },
274
- get hasGlobalStats() {
275
- return self.adapterCapabilities.includes('hasGlobalStats');
276
- },
277
- get fillSetting() {
278
- if (self.filled) {
279
- return 0;
280
- }
281
- else if (self.minSize === 1) {
282
- return 1;
283
- }
284
- else {
285
- return 2;
286
- }
287
- },
288
- }))
289
- .views(self => {
290
- const { trackMenuItems: superTrackMenuItems } = self;
291
- const hasRenderings = (0, configuration_1.getConf)(self, 'defaultRendering');
292
- return {
293
- trackMenuItems() {
294
- return [
295
- ...superTrackMenuItems(),
296
- {
297
- label: 'Score',
298
- subMenu: self.scoreTrackMenuItems(),
299
- },
300
- ...(self.canHaveFill
301
- ? [
302
- {
303
- label: 'Fill mode',
304
- subMenu: ['filled', 'no fill', 'no fill w/ emphasis'].map((elt, idx) => ({
305
- label: elt,
306
- type: 'radio',
307
- checked: self.fillSetting === idx,
308
- onClick: () => {
309
- self.setFill(idx);
310
- },
311
- })),
312
- },
313
- ]
314
- : []),
315
- ...(hasRenderings
316
- ? [
317
- {
318
- label: 'Renderer type',
319
- subMenu: [
320
- 'xyplot',
321
- 'multirowxy',
322
- 'multirowdensity',
323
- 'multiline',
324
- 'multirowline',
325
- ].map(key => ({
326
- label: key,
327
- type: 'radio',
328
- checked: self.rendererTypeNameSimple === key,
329
- onClick: () => {
330
- self.setRendererType(key);
331
- },
332
- })),
333
- },
334
- ]
335
- : []),
336
- ...(self.graphType
337
- ? [
338
- {
339
- type: 'checkbox',
340
- label: 'Draw cross hatches',
341
- checked: self.displayCrossHatchesSetting,
342
- onClick: () => {
343
- self.toggleCrossHatches();
344
- },
345
- },
346
- ]
347
- : []),
348
- {
349
- label: 'Cluster by score',
350
- onClick: () => {
351
- (0, util_1.getSession)(self).queueDialog(handleClose => [
352
- WiggleClusterDialog,
353
- {
354
- model: self,
355
- handleClose,
356
- },
357
- ]);
358
- },
359
- },
360
- {
361
- label: 'Show sidebar',
362
- type: 'checkbox',
363
- checked: self.showSidebar,
364
- onClick: () => {
365
- self.setShowSidebar(!self.showSidebar);
366
- },
367
- },
368
- {
369
- label: 'Edit colors/arrangement...',
370
- onClick: () => {
371
- (0, util_1.getSession)(self).queueDialog(handleClose => [
372
- SetColorDialog,
373
- {
374
- model: self,
375
- handleClose,
376
- },
377
- ]);
378
- },
379
- },
380
- ];
381
- },
382
- };
383
- })
384
- .actions(self => {
385
- const { renderSvg: superRenderSvg } = self;
386
- return {
387
- afterAttach() {
388
- ;
389
- (async () => {
390
- try {
391
- const [{ getMultiWiggleSourcesAutorun }, { getQuantitativeStatsAutorun },] = await Promise.all([
392
- Promise.resolve().then(() => __importStar(require('../getMultiWiggleSourcesAutorun'))),
393
- Promise.resolve().then(() => __importStar(require('../getQuantitativeStatsAutorun'))),
394
- ]);
395
- getQuantitativeStatsAutorun(self);
396
- getMultiWiggleSourcesAutorun(self);
397
- }
398
- catch (e) {
399
- if ((0, mobx_state_tree_1.isAlive)(self)) {
400
- console.error(e);
401
- (0, util_1.getSession)(self).notifyError(`${e}`, e);
402
- }
403
- }
404
- })();
405
- },
406
- async renderSvg(opts) {
407
- const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
408
- return renderSvg(self, opts, superRenderSvg);
409
- },
410
- };
411
- });
412
- }
413
- exports.default = stateModelFactory;
@@ -1,3 +0,0 @@
1
- import type { WiggleDisplayModel } from './model';
2
- import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
3
- export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -1,15 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.renderSvg = renderSvg;
7
- const jsx_runtime_1 = require("react/jsx-runtime");
8
- const util_1 = require("@jbrowse/core/util");
9
- const mobx_1 = require("mobx");
10
- const YScaleBars_1 = __importDefault(require("./components/YScaleBars"));
11
- async function renderSvg(self, opts, superRenderSvg) {
12
- await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
13
- const { offsetPx } = (0, util_1.getContainingView)(self);
14
- return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("g", { children: await superRenderSvg(opts) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${Math.max(-offsetPx, 0)})`, children: (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }) })] }));
15
- }
@@ -1,14 +0,0 @@
1
- export interface Source {
2
- baseUri?: string;
3
- name: string;
4
- label?: string;
5
- color?: string;
6
- group?: string;
7
- HP?: number;
8
- id?: string;
9
- [key: string]: unknown;
10
- }
11
- export interface SampleInfo {
12
- isPhased: boolean;
13
- maxPloidy: number;
14
- }
@@ -1,2 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
@@ -1 +0,0 @@
1
- export declare function randomColor(str: string): string;
@@ -1,10 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.randomColor = randomColor;
4
- function randomColor(str) {
5
- let sum = 0;
6
- for (let i = 0; i < str.length; i++) {
7
- sum += str.charCodeAt(i);
8
- }
9
- return `hsl(${sum * 10}, 20%, 50%)`;
10
- }
@@ -1,80 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
- name: {
4
- description: string;
5
- type: string;
6
- defaultValue: string;
7
- };
8
- assemblyNames: {
9
- description: string;
10
- type: string;
11
- defaultValue: string[];
12
- };
13
- description: {
14
- description: string;
15
- type: string;
16
- defaultValue: string;
17
- };
18
- category: {
19
- description: string;
20
- type: string;
21
- defaultValue: never[];
22
- };
23
- metadata: {
24
- type: string;
25
- description: string;
26
- defaultValue: {};
27
- };
28
- adapter: import("mobx-state-tree").IAnyModelType;
29
- textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
30
- indexingAttributes: {
31
- type: string;
32
- description: string;
33
- defaultValue: string[];
34
- };
35
- indexingFeatureTypesToExclude: {
36
- type: string;
37
- description: string;
38
- defaultValue: string[];
39
- };
40
- textSearchAdapter: import("mobx-state-tree").IAnyModelType;
41
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
42
- displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
43
- formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
44
- feature: {
45
- type: string;
46
- description: string;
47
- defaultValue: {};
48
- contextVariable: string[];
49
- };
50
- subfeatures: {
51
- type: string;
52
- description: string;
53
- defaultValue: {};
54
- contextVariable: string[];
55
- };
56
- depth: {
57
- type: string;
58
- defaultValue: number;
59
- description: string;
60
- };
61
- maxDepth: {
62
- type: string;
63
- defaultValue: number;
64
- description: string;
65
- };
66
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
67
- formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
68
- config: {
69
- type: string;
70
- description: string;
71
- defaultValue: {};
72
- contextVariable: string[];
73
- };
74
- hideUris: {
75
- type: string;
76
- defaultValue: boolean;
77
- };
78
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
79
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
80
- export default configSchema;
@@ -1,11 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const configuration_1 = require("@jbrowse/core/configuration");
4
- const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
5
- function x() { }
6
- const configSchema = (pluginManager) => {
7
- return (0, configuration_1.ConfigurationSchema)('MultiQuantitativeTrack', {}, {
8
- baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
9
- });
10
- };
11
- exports.default = configSchema;
@@ -1,2 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
@@ -1,20 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.default = MultiQuantitativeTrackF;
7
- const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
8
- const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
9
- const configSchema_1 = __importDefault(require("./configSchema"));
10
- function MultiQuantitativeTrackF(pluginManager) {
11
- pluginManager.addTrackType(() => {
12
- const configSchema = (0, configSchema_1.default)(pluginManager);
13
- return new TrackType_1.default({
14
- name: 'MultiQuantitativeTrack',
15
- displayName: 'Multi-quantitative track',
16
- configSchema,
17
- stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
18
- });
19
- });
20
- }
@@ -1,8 +0,0 @@
1
- import WiggleBaseRenderer from '../WiggleBaseRenderer';
2
- import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
3
- import type { Feature } from '@jbrowse/core/util';
4
- export default class MultiRowLineRenderer extends WiggleBaseRenderer {
5
- draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
6
- reducedFeatures: Feature[];
7
- }>;
8
- }
@@ -1,70 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
27
- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
30
- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
- __setModuleDefault(result, mod);
32
- return result;
33
- };
34
- })();
35
- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
38
- Object.defineProperty(exports, "__esModule", { value: true });
39
- const util_1 = require("@jbrowse/core/util");
40
- const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
41
- class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
42
- async draw(ctx, props) {
43
- const { stopToken, bpPerPx, sources, regions, features } = props;
44
- const region = regions[0];
45
- const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
46
- const height = props.height / sources.length;
47
- const width = (region.end - region.start) / bpPerPx;
48
- const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
49
- let feats = [];
50
- ctx.save();
51
- (0, util_1.forEachWithStopTokenCheck)(sources, stopToken, source => {
52
- const { reducedFeatures } = drawLine(ctx, {
53
- ...props,
54
- features: groups[source.name] || [],
55
- height,
56
- colorCallback: () => source.color || 'blue',
57
- });
58
- ctx.strokeStyle = 'rgba(200,200,200,0.8)';
59
- ctx.beginPath();
60
- ctx.moveTo(0, height);
61
- ctx.lineTo(width, height);
62
- ctx.stroke();
63
- ctx.translate(0, height);
64
- feats = feats.concat(reducedFeatures);
65
- });
66
- ctx.restore();
67
- return { reducedFeatures: feats };
68
- }
69
- }
70
- exports.default = MultiRowLineRenderer;