@jbrowse/plugin-wiggle 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (407) hide show
  1. package/esm/BigWigAdapter/BigWigAdapter.d.ts +14 -1
  2. package/esm/BigWigAdapter/BigWigAdapter.js +118 -22
  3. package/esm/BigWigAdapter/configSchema.d.ts +2 -2
  4. package/esm/BigWigAdapter/configSchema.js +1 -1
  5. package/esm/BigWigAdapter/index.js +2 -2
  6. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
  7. package/esm/CreateMultiWiggleExtension/index.js +2 -2
  8. package/esm/DensityRenderer/DensityRenderer.d.ts +5 -6
  9. package/esm/DensityRenderer/DensityRenderer.js +6 -5
  10. package/esm/DensityRenderer/configSchema.d.ts +3 -3
  11. package/esm/DensityRenderer/configSchema.js +1 -1
  12. package/esm/DensityRenderer/index.js +11 -9
  13. package/esm/DensityRenderer/makeImageData.d.ts +3 -0
  14. package/esm/DensityRenderer/makeImageData.js +13 -0
  15. package/esm/DensityRenderer/renderDensity.d.ts +3 -0
  16. package/esm/DensityRenderer/renderDensity.js +18 -0
  17. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +5 -7
  18. package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -15
  19. package/esm/LinePlotRenderer/configSchema.d.ts +4 -4
  20. package/esm/LinePlotRenderer/configSchema.js +1 -1
  21. package/esm/LinePlotRenderer/index.js +4 -4
  22. package/esm/LinePlotRenderer/makeImageData.d.ts +3 -0
  23. package/esm/LinePlotRenderer/makeImageData.js +13 -0
  24. package/esm/LinePlotRenderer/renderLinePlot.d.ts +3 -0
  25. package/esm/LinePlotRenderer/renderLinePlot.js +23 -0
  26. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  27. package/esm/LinearWiggleDisplay/components/Tooltip.js +10 -6
  28. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  29. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  30. package/esm/LinearWiggleDisplay/configSchema.d.ts +9 -9
  31. package/esm/LinearWiggleDisplay/configSchema.js +2 -2
  32. package/esm/LinearWiggleDisplay/index.d.ts +3 -3
  33. package/esm/LinearWiggleDisplay/index.js +6 -6
  34. package/esm/LinearWiggleDisplay/model.d.ts +1130 -92
  35. package/esm/LinearWiggleDisplay/model.js +58 -18
  36. package/esm/LinearWiggleDisplay/renderSvg.d.ts +1 -1
  37. package/esm/LinearWiggleDisplay/renderSvg.js +3 -2
  38. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +5 -7
  39. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +6 -24
  40. package/esm/MultiDensityRenderer/configSchema.d.ts +3 -3
  41. package/esm/MultiDensityRenderer/configSchema.js +1 -1
  42. package/esm/MultiDensityRenderer/index.js +4 -4
  43. package/esm/MultiDensityRenderer/makeImageData.d.ts +3 -0
  44. package/esm/MultiDensityRenderer/makeImageData.js +7 -0
  45. package/esm/MultiDensityRenderer/renderMultiDensity.d.ts +3 -0
  46. package/esm/MultiDensityRenderer/renderMultiDensity.js +37 -0
  47. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +5 -7
  48. package/esm/MultiLineRenderer/MultiLineRenderer.js +6 -17
  49. package/esm/MultiLineRenderer/configSchema.d.ts +5 -5
  50. package/esm/MultiLineRenderer/configSchema.js +2 -2
  51. package/esm/MultiLineRenderer/index.js +4 -4
  52. package/esm/MultiLineRenderer/makeImageData.d.ts +3 -0
  53. package/esm/MultiLineRenderer/makeImageData.js +7 -0
  54. package/esm/MultiLineRenderer/renderMultiLine.d.ts +3 -0
  55. package/esm/MultiLineRenderer/renderMultiLine.js +34 -0
  56. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +2 -2
  57. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +11 -5
  58. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +1 -1
  59. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +4 -4
  60. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +1 -1
  61. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +5 -5
  62. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +3 -3
  63. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +2 -4
  64. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +12 -0
  65. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.js +11 -0
  66. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -1
  67. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +4 -3
  68. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -2
  69. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -3
  70. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
  71. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -34
  72. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
  73. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +3 -3
  74. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -4
  75. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +15 -12
  76. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +1 -1
  77. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +3 -3
  78. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +1 -1
  79. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +13 -6
  80. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +1 -1
  81. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +24 -21
  82. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +2 -1
  83. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  84. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  85. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -2
  86. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +5 -16
  87. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.d.ts +7 -0
  88. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.js +15 -0
  89. package/esm/MultiLinearWiggleDisplay/components/types.d.ts +10 -0
  90. package/esm/MultiLinearWiggleDisplay/components/types.js +1 -0
  91. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.d.ts +31 -0
  92. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +45 -0
  93. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.d.ts +10 -0
  94. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +81 -0
  95. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.d.ts +1 -0
  96. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.js +4 -0
  97. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.d.ts +10 -0
  98. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.js +39 -0
  99. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +5 -9
  100. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +9 -9
  101. package/esm/MultiLinearWiggleDisplay/configSchema.js +2 -2
  102. package/esm/MultiLinearWiggleDisplay/index.js +3 -3
  103. package/esm/MultiLinearWiggleDisplay/model.d.ts +3628 -93
  104. package/esm/MultiLinearWiggleDisplay/model.js +80 -50
  105. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +1 -1
  106. package/esm/MultiLinearWiggleDisplay/renderSvg.js +3 -2
  107. package/esm/MultiLinearWiggleDisplay/types.d.ts +1 -0
  108. package/esm/MultiLinearWiggleDisplay/util.d.ts +0 -1
  109. package/esm/MultiLinearWiggleDisplay/util.js +1 -7
  110. package/esm/MultiQuantitativeTrack/configSchema.d.ts +16 -11
  111. package/esm/MultiQuantitativeTrack/index.js +13 -2
  112. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +5 -7
  113. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +6 -29
  114. package/esm/MultiRowLineRenderer/configSchema.d.ts +5 -5
  115. package/esm/MultiRowLineRenderer/configSchema.js +2 -2
  116. package/esm/MultiRowLineRenderer/index.js +4 -4
  117. package/esm/MultiRowLineRenderer/makeImageData.d.ts +3 -0
  118. package/esm/MultiRowLineRenderer/makeImageData.js +7 -0
  119. package/esm/MultiRowLineRenderer/renderMultiRowLine.d.ts +3 -0
  120. package/esm/MultiRowLineRenderer/renderMultiRowLine.js +44 -0
  121. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +5 -7
  122. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +6 -29
  123. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +5 -5
  124. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -2
  125. package/esm/MultiRowXYPlotRenderer/index.js +4 -4
  126. package/esm/MultiRowXYPlotRenderer/makeImageData.d.ts +3 -0
  127. package/esm/MultiRowXYPlotRenderer/makeImageData.js +7 -0
  128. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.d.ts +3 -0
  129. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.js +42 -0
  130. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +7 -1
  131. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +81 -26
  132. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -2
  133. package/esm/MultiWiggleAdapter/index.js +2 -2
  134. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
  135. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +4 -5
  136. package/esm/MultiWiggleAddTrackWorkflow/index.js +2 -2
  137. package/esm/MultiWiggleRendering.d.ts +7 -7
  138. package/esm/MultiWiggleRendering.js +9 -7
  139. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +5 -7
  140. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +6 -20
  141. package/esm/MultiXYPlotRenderer/configSchema.d.ts +5 -5
  142. package/esm/MultiXYPlotRenderer/configSchema.js +2 -2
  143. package/esm/MultiXYPlotRenderer/index.js +4 -4
  144. package/esm/MultiXYPlotRenderer/makeImageData.d.ts +3 -0
  145. package/esm/MultiXYPlotRenderer/makeImageData.js +7 -0
  146. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.d.ts +3 -0
  147. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.js +35 -0
  148. package/esm/QuantitativeTrack/configSchema.d.ts +16 -11
  149. package/esm/QuantitativeTrack/index.js +13 -2
  150. package/esm/SVGErrorBox.d.ts +5 -0
  151. package/esm/SVGErrorBox.js +4 -0
  152. package/esm/Tooltip.d.ts +1 -3
  153. package/esm/Tooltip.js +7 -7
  154. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +2 -10
  155. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.js +3 -15
  156. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +1 -1
  157. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js +2 -5
  158. package/esm/WiggleRPC/MultiWiggleGetSources.js +1 -4
  159. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +1 -4
  160. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +10 -0
  161. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +26 -5
  162. package/esm/WiggleRPC/executeClusterScoreMatrix.d.ts +6 -0
  163. package/esm/WiggleRPC/executeClusterScoreMatrix.js +15 -0
  164. package/esm/WiggleRPC/getScoreMatrix.d.ts +1 -1
  165. package/esm/WiggleRPC/getScoreMatrix.js +9 -6
  166. package/esm/WiggleRPC/rpcMethods.d.ts +5 -5
  167. package/esm/WiggleRPC/rpcMethods.js +5 -5
  168. package/esm/WiggleRPC/types.d.ts +1 -1
  169. package/esm/WiggleRendering.d.ts +2 -3
  170. package/esm/WiggleRendering.js +16 -3
  171. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +5 -6
  172. package/esm/XYPlotRenderer/XYPlotRenderer.js +6 -20
  173. package/esm/XYPlotRenderer/configSchema.d.ts +5 -5
  174. package/esm/XYPlotRenderer/configSchema.js +2 -2
  175. package/esm/XYPlotRenderer/index.d.ts +3 -3
  176. package/esm/XYPlotRenderer/index.js +14 -12
  177. package/esm/XYPlotRenderer/makeImageData.d.ts +3 -0
  178. package/esm/XYPlotRenderer/makeImageData.js +13 -0
  179. package/esm/XYPlotRenderer/renderXYPlot.d.ts +3 -0
  180. package/esm/XYPlotRenderer/renderXYPlot.js +23 -0
  181. package/esm/configSchema.d.ts +3 -3
  182. package/esm/configSchema.js +1 -1
  183. package/esm/drawDensity.d.ts +4 -2
  184. package/esm/drawDensity.js +25 -15
  185. package/esm/drawLine.d.ts +5 -3
  186. package/esm/drawLine.js +118 -41
  187. package/esm/drawXY.d.ts +4 -2
  188. package/esm/drawXY.js +75 -36
  189. package/esm/getMultiWiggleSourcesAutorun.d.ts +4 -2
  190. package/esm/getMultiWiggleSourcesAutorun.js +7 -2
  191. package/esm/getQuantitativeStats.d.ts +4 -2
  192. package/esm/getQuantitativeStats.js +18 -7
  193. package/esm/getQuantitativeStatsAutorun.d.ts +3 -2
  194. package/esm/getQuantitativeStatsAutorun.js +3 -3
  195. package/esm/index.d.ts +15 -19
  196. package/esm/index.js +31 -37
  197. package/esm/multiRendererHelper.d.ts +7 -0
  198. package/esm/multiRendererHelper.js +12 -0
  199. package/esm/saveTrackFormats/bedGraph.d.ts +4 -0
  200. package/esm/saveTrackFormats/bedGraph.js +11 -0
  201. package/esm/shared/SharedWiggleConfigSchema.d.ts +5 -5
  202. package/esm/shared/SharedWiggleConfigSchema.js +1 -1
  203. package/esm/shared/SharedWiggleMixin.d.ts +1083 -120
  204. package/esm/shared/SharedWiggleMixin.js +48 -26
  205. package/esm/shared/YScaleBar.d.ts +1 -1
  206. package/esm/shared/YScaleBar.js +16 -4
  207. package/esm/shared/axisPropsFromTickScale.d.ts +7 -0
  208. package/esm/shared/axisPropsFromTickScale.js +12 -0
  209. package/esm/svgExportUtil.d.ts +9 -0
  210. package/esm/svgExportUtil.js +6 -0
  211. package/esm/types.d.ts +24 -0
  212. package/esm/types.js +1 -0
  213. package/esm/util.d.ts +35 -1
  214. package/esm/util.js +61 -2
  215. package/package.json +35 -38
  216. package/dist/BigWigAdapter/BigWigAdapter.d.ts +0 -25
  217. package/dist/BigWigAdapter/BigWigAdapter.js +0 -81
  218. package/dist/BigWigAdapter/configSchema.d.ts +0 -20
  219. package/dist/BigWigAdapter/configSchema.js +0 -37
  220. package/dist/BigWigAdapter/index.d.ts +0 -2
  221. package/dist/BigWigAdapter/index.js +0 -54
  222. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -8
  223. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -26
  224. package/dist/CreateMultiWiggleExtension/index.d.ts +0 -2
  225. package/dist/CreateMultiWiggleExtension/index.js +0 -95
  226. package/dist/DensityRenderer/DensityRenderer.d.ts +0 -7
  227. package/dist/DensityRenderer/DensityRenderer.js +0 -46
  228. package/dist/DensityRenderer/configSchema.d.ts +0 -37
  229. package/dist/DensityRenderer/configSchema.js +0 -13
  230. package/dist/DensityRenderer/index.d.ts +0 -2
  231. package/dist/DensityRenderer/index.js +0 -17
  232. package/dist/GuessAdapter/index.d.ts +0 -2
  233. package/dist/GuessAdapter/index.js +0 -25
  234. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +0 -8
  235. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -56
  236. package/dist/LinePlotRenderer/configSchema.d.ts +0 -43
  237. package/dist/LinePlotRenderer/configSchema.js +0 -19
  238. package/dist/LinePlotRenderer/index.d.ts +0 -2
  239. package/dist/LinePlotRenderer/index.js +0 -17
  240. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -12
  241. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -31
  242. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +0 -15
  243. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -32
  244. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  245. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -28
  246. package/dist/LinearWiggleDisplay/configSchema.d.ts +0 -78
  247. package/dist/LinearWiggleDisplay/configSchema.js +0 -29
  248. package/dist/LinearWiggleDisplay/index.d.ts +0 -5
  249. package/dist/LinearWiggleDisplay/index.js +0 -65
  250. package/dist/LinearWiggleDisplay/model.d.ts +0 -419
  251. package/dist/LinearWiggleDisplay/model.js +0 -262
  252. package/dist/LinearWiggleDisplay/renderSvg.d.ts +0 -3
  253. package/dist/LinearWiggleDisplay/renderSvg.js +0 -16
  254. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +0 -8
  255. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +0 -65
  256. package/dist/MultiDensityRenderer/configSchema.d.ts +0 -37
  257. package/dist/MultiDensityRenderer/configSchema.js +0 -13
  258. package/dist/MultiDensityRenderer/index.d.ts +0 -2
  259. package/dist/MultiDensityRenderer/index.js +0 -17
  260. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +0 -8
  261. package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -58
  262. package/dist/MultiLineRenderer/configSchema.d.ts +0 -49
  263. package/dist/MultiLineRenderer/configSchema.js +0 -26
  264. package/dist/MultiLineRenderer/index.d.ts +0 -2
  265. package/dist/MultiLineRenderer/index.js +0 -17
  266. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +0 -7
  267. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -18
  268. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +0 -7
  269. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +0 -17
  270. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +0 -7
  271. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +0 -15
  272. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +0 -11
  273. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +0 -19
  274. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +0 -8
  275. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +0 -9
  276. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +0 -5
  277. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +0 -19
  278. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -9
  279. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -42
  280. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +0 -7
  281. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +0 -130
  282. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +0 -18
  283. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -35
  284. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +0 -6
  285. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +0 -29
  286. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +0 -7
  287. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +0 -79
  288. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +0 -7
  289. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +0 -145
  290. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +0 -7
  291. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.js +0 -2
  292. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  293. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -14
  294. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +0 -7
  295. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +0 -28
  296. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +0 -13
  297. package/dist/MultiLinearWiggleDisplay/components/util.js +0 -45
  298. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +0 -84
  299. package/dist/MultiLinearWiggleDisplay/configSchema.js +0 -44
  300. package/dist/MultiLinearWiggleDisplay/index.d.ts +0 -2
  301. package/dist/MultiLinearWiggleDisplay/index.js +0 -57
  302. package/dist/MultiLinearWiggleDisplay/model.d.ts +0 -436
  303. package/dist/MultiLinearWiggleDisplay/model.js +0 -413
  304. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +0 -3
  305. package/dist/MultiLinearWiggleDisplay/renderSvg.js +0 -15
  306. package/dist/MultiLinearWiggleDisplay/types.d.ts +0 -14
  307. package/dist/MultiLinearWiggleDisplay/types.js +0 -2
  308. package/dist/MultiLinearWiggleDisplay/util.d.ts +0 -1
  309. package/dist/MultiLinearWiggleDisplay/util.js +0 -10
  310. package/dist/MultiQuantitativeTrack/configSchema.d.ts +0 -80
  311. package/dist/MultiQuantitativeTrack/configSchema.js +0 -11
  312. package/dist/MultiQuantitativeTrack/index.d.ts +0 -2
  313. package/dist/MultiQuantitativeTrack/index.js +0 -20
  314. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +0 -8
  315. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +0 -70
  316. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -49
  317. package/dist/MultiRowLineRenderer/configSchema.js +0 -26
  318. package/dist/MultiRowLineRenderer/index.d.ts +0 -2
  319. package/dist/MultiRowLineRenderer/index.js +0 -17
  320. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +0 -8
  321. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +0 -70
  322. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -57
  323. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -34
  324. package/dist/MultiRowXYPlotRenderer/index.d.ts +0 -2
  325. package/dist/MultiRowXYPlotRenderer/index.js +0 -17
  326. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +0 -30
  327. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -85
  328. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -13
  329. package/dist/MultiWiggleAdapter/configSchema.js +0 -17
  330. package/dist/MultiWiggleAdapter/index.d.ts +0 -2
  331. package/dist/MultiWiggleAdapter/index.js +0 -57
  332. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +0 -5
  333. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +0 -89
  334. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +0 -2
  335. package/dist/MultiWiggleAddTrackWorkflow/index.js +0 -46
  336. package/dist/MultiWiggleRendering.d.ts +0 -19
  337. package/dist/MultiWiggleRendering.js +0 -81
  338. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +0 -8
  339. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -61
  340. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -57
  341. package/dist/MultiXYPlotRenderer/configSchema.js +0 -34
  342. package/dist/MultiXYPlotRenderer/index.d.ts +0 -2
  343. package/dist/MultiXYPlotRenderer/index.js +0 -17
  344. package/dist/QuantitativeTrack/configSchema.d.ts +0 -80
  345. package/dist/QuantitativeTrack/configSchema.js +0 -11
  346. package/dist/QuantitativeTrack/index.d.ts +0 -2
  347. package/dist/QuantitativeTrack/index.js +0 -20
  348. package/dist/Tooltip.d.ts +0 -18
  349. package/dist/Tooltip.js +0 -34
  350. package/dist/WiggleBaseRenderer.d.ts +0 -57
  351. package/dist/WiggleBaseRenderer.js +0 -42
  352. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +0 -14
  353. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.js +0 -31
  354. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +0 -6
  355. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.js +0 -22
  356. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +0 -14
  357. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -22
  358. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +0 -12
  359. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -22
  360. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +0 -13
  361. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -22
  362. package/dist/WiggleRPC/getScoreMatrix.d.ts +0 -6
  363. package/dist/WiggleRPC/getScoreMatrix.js +0 -35
  364. package/dist/WiggleRPC/rpcMethods.d.ts +0 -5
  365. package/dist/WiggleRPC/rpcMethods.js +0 -21
  366. package/dist/WiggleRPC/type.d.ts +0 -0
  367. package/dist/WiggleRPC/type.js +0 -1
  368. package/dist/WiggleRPC/types.d.ts +0 -13
  369. package/dist/WiggleRPC/types.js +0 -2
  370. package/dist/WiggleRendering.d.ts +0 -14
  371. package/dist/WiggleRendering.js +0 -35
  372. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +0 -7
  373. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -61
  374. package/dist/XYPlotRenderer/configSchema.d.ts +0 -57
  375. package/dist/XYPlotRenderer/configSchema.js +0 -34
  376. package/dist/XYPlotRenderer/index.d.ts +0 -5
  377. package/dist/XYPlotRenderer/index.js +0 -24
  378. package/dist/configSchema.d.ts +0 -37
  379. package/dist/configSchema.js +0 -47
  380. package/dist/drawDensity.d.ts +0 -18
  381. package/dist/drawDensity.js +0 -81
  382. package/dist/drawLine.d.ts +0 -20
  383. package/dist/drawLine.js +0 -77
  384. package/dist/drawXY.d.ts +0 -21
  385. package/dist/drawXY.js +0 -191
  386. package/dist/getMultiWiggleSourcesAutorun.d.ts +0 -17
  387. package/dist/getMultiWiggleSourcesAutorun.js +0 -38
  388. package/dist/getQuantitativeStats.d.ts +0 -13
  389. package/dist/getQuantitativeStats.js +0 -70
  390. package/dist/getQuantitativeStatsAutorun.d.ts +0 -13
  391. package/dist/getQuantitativeStatsAutorun.js +0 -35
  392. package/dist/index.d.ts +0 -91
  393. package/dist/index.js +0 -112
  394. package/dist/shared/SetMinMaxDialog.d.ts +0 -10
  395. package/dist/shared/SetMinMaxDialog.js +0 -26
  396. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -66
  397. package/dist/shared/SharedWiggleConfigSchema.js +0 -56
  398. package/dist/shared/SharedWiggleMixin.d.ts +0 -405
  399. package/dist/shared/SharedWiggleMixin.js +0 -343
  400. package/dist/shared/YScaleBar.d.ts +0 -9
  401. package/dist/shared/YScaleBar.js +0 -12
  402. package/dist/util.d.ts +0 -24
  403. package/dist/util.js +0 -105
  404. package/esm/WiggleBaseRenderer.d.ts +0 -57
  405. package/esm/WiggleBaseRenderer.js +0 -36
  406. package/esm/WiggleRPC/type.d.ts +0 -0
  407. package/esm/WiggleRPC/type.js +0 -1
@@ -1,78 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
- defaultRendering: {
4
- type: string;
5
- model: import("mobx-state-tree").ISimpleType<string>;
6
- defaultValue: string;
7
- };
8
- renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
9
- DensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
10
- XYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
11
- LinePlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
12
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
13
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
14
- autoscale: {
15
- type: string;
16
- defaultValue: string;
17
- model: import("mobx-state-tree").ISimpleType<string>;
18
- description: string;
19
- };
20
- minimalTicks: {
21
- type: string;
22
- defaultValue: boolean;
23
- description: string;
24
- };
25
- minScore: {
26
- type: string;
27
- defaultValue: number;
28
- description: string;
29
- };
30
- maxScore: {
31
- type: string;
32
- description: string;
33
- defaultValue: number;
34
- };
35
- numStdDev: {
36
- type: string;
37
- description: string;
38
- defaultValue: number;
39
- };
40
- scaleType: {
41
- type: string;
42
- model: import("mobx-state-tree").ISimpleType<string>;
43
- description: string;
44
- defaultValue: string;
45
- };
46
- inverted: {
47
- type: string;
48
- description: string;
49
- defaultValue: boolean;
50
- };
51
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
52
- maxFeatureScreenDensity: {
53
- type: string;
54
- description: string;
55
- defaultValue: number;
56
- };
57
- fetchSizeLimit: {
58
- type: string;
59
- defaultValue: number;
60
- description: string;
61
- };
62
- height: {
63
- type: string;
64
- defaultValue: number;
65
- description: string;
66
- };
67
- mouseover: {
68
- type: string;
69
- description: string;
70
- defaultValue: string;
71
- contextVariable: string[];
72
- };
73
- jexlFilters: {
74
- type: string;
75
- description: string;
76
- defaultValue: never[];
77
- };
78
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
@@ -1,29 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.default = WiggleConfigFactory;
7
- const configuration_1 = require("@jbrowse/core/configuration");
8
- const mobx_state_tree_1 = require("mobx-state-tree");
9
- const SharedWiggleConfigSchema_1 = __importDefault(require("../shared/SharedWiggleConfigSchema"));
10
- function WiggleConfigFactory(pluginManager) {
11
- const XYPlotRendererConfigSchema = pluginManager.getRendererType('XYPlotRenderer').configSchema;
12
- const DensityRendererConfigSchema = pluginManager.getRendererType('DensityRenderer').configSchema;
13
- const LinePlotRendererConfigSchema = pluginManager.getRendererType('LinePlotRenderer').configSchema;
14
- return (0, configuration_1.ConfigurationSchema)('LinearWiggleDisplay', {
15
- defaultRendering: {
16
- type: 'stringEnum',
17
- model: mobx_state_tree_1.types.enumeration('Rendering', ['density', 'xyplot', 'line']),
18
- defaultValue: 'xyplot',
19
- },
20
- renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
21
- DensityRenderer: DensityRendererConfigSchema,
22
- XYPlotRenderer: XYPlotRendererConfigSchema,
23
- LinePlotRenderer: LinePlotRendererConfigSchema,
24
- }),
25
- }, {
26
- baseConfiguration: (0, SharedWiggleConfigSchema_1.default)(),
27
- explicitlyTyped: true,
28
- });
29
- }
@@ -1,5 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- export default function LinearWiggleDisplayF(pluginManager: PluginManager): void;
3
- export { default as Tooltip } from './components/Tooltip';
4
- export { default as ReactComponent } from './components/WiggleDisplayComponent';
5
- export { default as modelFactory } from './model';
@@ -1,65 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
27
- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
30
- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
- __setModuleDefault(result, mod);
32
- return result;
33
- };
34
- })();
35
- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
38
- Object.defineProperty(exports, "__esModule", { value: true });
39
- exports.modelFactory = exports.ReactComponent = exports.Tooltip = void 0;
40
- exports.default = LinearWiggleDisplayF;
41
- const react_1 = require("react");
42
- const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
43
- const configSchema_1 = __importDefault(require("./configSchema"));
44
- const model_1 = __importDefault(require("./model"));
45
- function LinearWiggleDisplayF(pluginManager) {
46
- pluginManager.addDisplayType(() => {
47
- const configSchema = (0, configSchema_1.default)(pluginManager);
48
- const stateModel = (0, model_1.default)(pluginManager, configSchema);
49
- return new DisplayType_1.default({
50
- name: 'LinearWiggleDisplay',
51
- displayName: 'Wiggle display',
52
- configSchema,
53
- stateModel,
54
- trackType: 'QuantitativeTrack',
55
- viewType: 'LinearGenomeView',
56
- ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
57
- });
58
- });
59
- }
60
- var Tooltip_1 = require("./components/Tooltip");
61
- Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
62
- var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
63
- Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_1).default; } });
64
- var model_2 = require("./model");
65
- Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
@@ -1,419 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
- import type { AnyReactComponentType } from '@jbrowse/core/util';
4
- import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
5
- import type { Instance } from 'mobx-state-tree';
6
- declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
7
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
8
- type: import("mobx-state-tree").ISimpleType<string>;
9
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
10
- } & {
11
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
12
- } & {
13
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
14
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
15
- } & {
16
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
17
- key: import("mobx-state-tree").ISimpleType<string>;
18
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
19
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
20
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
21
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
22
- }, {
23
- stopToken: string | undefined;
24
- filled: boolean;
25
- reactElement: React.ReactElement | undefined;
26
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
27
- layout: any;
28
- status: string;
29
- error: unknown;
30
- message: string | undefined;
31
- maxHeightReached: boolean;
32
- ReactComponent: ({ model, }: {
33
- model: {
34
- error?: unknown;
35
- reload: () => void;
36
- message: React.ReactNode;
37
- filled?: boolean;
38
- status?: string;
39
- reactElement?: React.ReactElement;
40
- };
41
- }) => import("react/jsx-runtime").JSX.Element | undefined;
42
- renderProps: any;
43
- } & {
44
- doReload(): void;
45
- afterAttach(): void;
46
- setStatus(message: string): void;
47
- setLoading(newStopToken: string): void;
48
- setMessage(messageText: string): void;
49
- setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
50
- setError(error: unknown): void;
51
- reload(): void;
52
- beforeDestroy(): void;
53
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
54
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
55
- maxFeatureScreenDensity: {
56
- type: string;
57
- description: string;
58
- defaultValue: number;
59
- };
60
- fetchSizeLimit: {
61
- type: string;
62
- defaultValue: number;
63
- description: string;
64
- };
65
- height: {
66
- type: string;
67
- defaultValue: number;
68
- description: string;
69
- };
70
- mouseover: {
71
- type: string;
72
- description: string;
73
- defaultValue: string;
74
- contextVariable: string[];
75
- };
76
- jexlFilters: {
77
- type: string;
78
- description: string;
79
- defaultValue: never[];
80
- };
81
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
82
- } & {
83
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
84
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
85
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
86
- minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
87
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
89
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
90
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
91
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
92
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
93
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
95
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
96
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
97
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
98
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
99
- configuration: AnyConfigurationSchemaType;
100
- } & {
101
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
102
- invertedSetting: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
103
- }, {
104
- rendererTypeName: string;
105
- error: unknown;
106
- message: string | undefined;
107
- } & {
108
- readonly RenderingComponent: React.FC<{
109
- model: {
110
- id: string;
111
- type: string;
112
- rpcDriverName: string | undefined;
113
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
114
- rendererTypeName: string;
115
- error: unknown;
116
- message: string | undefined;
117
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
118
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
119
- type: import("mobx-state-tree").ISimpleType<string>;
120
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
121
- }, {
122
- rendererTypeName: string;
123
- error: unknown;
124
- message: string | undefined;
125
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
126
- onHorizontalScroll?: () => void;
127
- blockState?: Record<string, any>;
128
- }>;
129
- readonly DisplayBlurb: React.FC<{
130
- model: {
131
- id: string;
132
- type: string;
133
- rpcDriverName: string | undefined;
134
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
135
- rendererTypeName: string;
136
- error: unknown;
137
- message: string | undefined;
138
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
139
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
140
- type: import("mobx-state-tree").ISimpleType<string>;
141
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
142
- }, {
143
- rendererTypeName: string;
144
- error: unknown;
145
- message: string | undefined;
146
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
147
- }> | null;
148
- readonly adapterConfig: any;
149
- readonly parentTrack: any;
150
- renderProps(): any;
151
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
152
- readonly DisplayMessageComponent: undefined | React.FC<any>;
153
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
154
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
155
- regionCannotBeRendered(): null;
156
- } & {
157
- setMessage(arg?: string): void;
158
- setError(error?: unknown): void;
159
- setRpcDriverName(rpcDriverName: string): void;
160
- reload(): void;
161
- } & {
162
- scrollTop: number;
163
- } & {
164
- readonly height: number;
165
- } & {
166
- setScrollTop(scrollTop: number): void;
167
- setHeight(displayHeight: number): number;
168
- resizeHeight(distance: number): number;
169
- } & {
170
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
171
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
172
- currStatsBpPerPx: number;
173
- } & {
174
- readonly currentBytesRequested: number;
175
- readonly currentFeatureScreenDensity: number;
176
- readonly maxFeatureScreenDensity: any;
177
- readonly featureDensityStatsReady: boolean;
178
- readonly maxAllowableBytes: number;
179
- } & {
180
- afterAttach(): void;
181
- } & {
182
- setCurrStatsBpPerPx(n: number): void;
183
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
184
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
185
- setFeatureDensityStatsP(arg: any): void;
186
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
187
- clearFeatureDensityStats(): void;
188
- } & {
189
- readonly regionTooLarge: boolean;
190
- readonly regionTooLargeReason: string;
191
- } & {
192
- readonly statsReadyAndRegionNotTooLarge: boolean;
193
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
194
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
195
- } & {
196
- featureIdUnderMouse: undefined | string;
197
- contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
198
- } & {
199
- readonly DisplayMessageComponent: undefined | React.FC<any>;
200
- readonly blockType: "staticBlocks" | "dynamicBlocks";
201
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
202
- } & {
203
- readonly renderDelay: number;
204
- readonly TooltipComponent: AnyReactComponentType;
205
- readonly selectedFeatureId: string | undefined;
206
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
207
- } & {
208
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
209
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
210
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
211
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
212
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
213
- } & {
214
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
215
- deleteBlock(key: string): void;
216
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
217
- navToFeature(feature: import("@jbrowse/core/util").Feature): void;
218
- clearFeatureSelection(): void;
219
- setFeatureIdUnderMouse(feature?: string): void;
220
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
221
- } & {
222
- reload(): Promise<void>;
223
- } & {
224
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
225
- contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
226
- renderProps(): any;
227
- } & {
228
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
229
- afterAttach(): void;
230
- } & {
231
- message: undefined | string;
232
- stats: {
233
- currStatsBpPerPx: number;
234
- scoreMin: number;
235
- scoreMax: number;
236
- } | undefined;
237
- statsFetchInProgress: undefined | string;
238
- } & {
239
- updateQuantitativeStats(stats: {
240
- currStatsBpPerPx: number;
241
- scoreMin: number;
242
- scoreMax: number;
243
- }): void;
244
- setColor(color?: string): void;
245
- setPosColor(color?: string): void;
246
- setNegColor(color?: string): void;
247
- setStatsLoading(arg?: string): void;
248
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
249
- setResolution(res: number): void;
250
- setFill(fill: number): void;
251
- toggleLogScale(): void;
252
- setScaleType(scale?: string): void;
253
- setSummaryScoreMode(val: string): void;
254
- setAutoscale(val: string): void;
255
- setMaxScore(val?: number): void;
256
- setRendererType(val: string): void;
257
- setMinScore(val?: number): void;
258
- toggleCrossHatches(): void;
259
- setCrossHatches(cross: boolean): void;
260
- } & {
261
- readonly adapterTypeName: any;
262
- readonly rendererTypeNameSimple: string;
263
- readonly filters: undefined;
264
- readonly scaleType: string;
265
- readonly maxScore: number;
266
- readonly minScore: number;
267
- } & {
268
- readonly adapterCapabilities: string[];
269
- readonly rendererConfig: {
270
- [x: string]: any;
271
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
272
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
273
- [x: string]: any;
274
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
275
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
276
- [x: string]: any;
277
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
278
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
279
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
280
- readonly autoscaleType: string;
281
- } & {
282
- readonly domain: number[] | undefined;
283
- } & {
284
- readonly filled: boolean;
285
- readonly summaryScoreModeSetting: string;
286
- readonly scaleOpts: {
287
- domain: number[] | undefined;
288
- stats: {
289
- currStatsBpPerPx: number;
290
- scoreMin: number;
291
- scoreMax: number;
292
- } | undefined;
293
- autoscaleType: string;
294
- scaleType: string;
295
- inverted: boolean;
296
- };
297
- readonly canHaveFill: boolean;
298
- readonly displayCrossHatchesSetting: boolean;
299
- readonly hasResolution: boolean;
300
- readonly hasGlobalStats: boolean;
301
- } & {
302
- scoreTrackMenuItems(): ({
303
- label: string;
304
- subMenu: {
305
- label: string;
306
- onClick: () => void;
307
- }[];
308
- onClick?: undefined;
309
- } | {
310
- label: string;
311
- subMenu: {
312
- label: string;
313
- type: string;
314
- checked: boolean;
315
- onClick: () => void;
316
- }[];
317
- onClick?: undefined;
318
- } | {
319
- label: string;
320
- onClick: () => void;
321
- subMenu?: undefined;
322
- })[];
323
- } & {
324
- reload(): Promise<void>;
325
- } & {
326
- setInverted(arg: boolean): void;
327
- } & {
328
- readonly TooltipComponent: AnyReactComponentType;
329
- readonly rendererTypeName: string;
330
- readonly quantitativeStatsRelevantToCurrentZoom: boolean;
331
- readonly graphType: boolean;
332
- readonly inverted: boolean;
333
- } & {
334
- adapterProps(): any;
335
- readonly ticks: {
336
- range: number[];
337
- values: number[];
338
- format: (d: import("d3-scale").NumberValue) => string;
339
- position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
340
- } | undefined;
341
- } & {
342
- renderProps(): any;
343
- readonly fillSetting: 2 | 1 | 0;
344
- readonly quantitativeStatsReady: boolean;
345
- } & {
346
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
347
- label: string;
348
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
349
- muiName: string;
350
- };
351
- subMenu: ({
352
- label: string;
353
- subMenu: {
354
- label: string;
355
- onClick: () => void;
356
- }[];
357
- onClick?: undefined;
358
- } | {
359
- label: string;
360
- subMenu: {
361
- label: string;
362
- type: string;
363
- checked: boolean;
364
- onClick: () => void;
365
- }[];
366
- onClick?: undefined;
367
- } | {
368
- label: string;
369
- onClick: () => void;
370
- subMenu?: undefined;
371
- })[];
372
- type?: undefined;
373
- checked?: undefined;
374
- onClick?: undefined;
375
- } | {
376
- label: string;
377
- type: string;
378
- checked: boolean;
379
- onClick: () => void;
380
- icon?: undefined;
381
- subMenu?: undefined;
382
- } | {
383
- label: string;
384
- subMenu: {
385
- label: string;
386
- type: string;
387
- checked: boolean;
388
- onClick: () => void;
389
- }[];
390
- icon?: undefined;
391
- type?: undefined;
392
- checked?: undefined;
393
- onClick?: undefined;
394
- } | {
395
- label: string;
396
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
397
- muiName: string;
398
- };
399
- onClick: () => void;
400
- subMenu?: undefined;
401
- type?: undefined;
402
- checked?: undefined;
403
- } | {
404
- type: string;
405
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
406
- muiName: string;
407
- };
408
- label: string;
409
- checked: boolean;
410
- onClick: () => void;
411
- subMenu?: undefined;
412
- })[];
413
- } & {
414
- afterAttach(): void;
415
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
416
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
417
- export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
418
- export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
419
- export default stateModelFactory;