@jbrowse/plugin-wiggle 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +14 -1
- package/esm/BigWigAdapter/BigWigAdapter.js +118 -22
- package/esm/BigWigAdapter/configSchema.d.ts +2 -2
- package/esm/BigWigAdapter/configSchema.js +1 -1
- package/esm/BigWigAdapter/index.js +2 -2
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +2 -2
- package/esm/DensityRenderer/DensityRenderer.d.ts +5 -6
- package/esm/DensityRenderer/DensityRenderer.js +6 -5
- package/esm/DensityRenderer/configSchema.d.ts +3 -3
- package/esm/DensityRenderer/configSchema.js +1 -1
- package/esm/DensityRenderer/index.js +11 -9
- package/esm/DensityRenderer/makeImageData.d.ts +3 -0
- package/esm/DensityRenderer/makeImageData.js +13 -0
- package/esm/DensityRenderer/renderDensity.d.ts +3 -0
- package/esm/DensityRenderer/renderDensity.js +18 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +5 -7
- package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -15
- package/esm/LinePlotRenderer/configSchema.d.ts +4 -4
- package/esm/LinePlotRenderer/configSchema.js +1 -1
- package/esm/LinePlotRenderer/index.js +4 -4
- package/esm/LinePlotRenderer/makeImageData.d.ts +3 -0
- package/esm/LinePlotRenderer/makeImageData.js +13 -0
- package/esm/LinePlotRenderer/renderLinePlot.d.ts +3 -0
- package/esm/LinePlotRenderer/renderLinePlot.js +23 -0
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.js +10 -6
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/esm/LinearWiggleDisplay/configSchema.d.ts +9 -9
- package/esm/LinearWiggleDisplay/configSchema.js +2 -2
- package/esm/LinearWiggleDisplay/index.d.ts +3 -3
- package/esm/LinearWiggleDisplay/index.js +6 -6
- package/esm/LinearWiggleDisplay/model.d.ts +1130 -92
- package/esm/LinearWiggleDisplay/model.js +58 -18
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +1 -1
- package/esm/LinearWiggleDisplay/renderSvg.js +3 -2
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +5 -7
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +6 -24
- package/esm/MultiDensityRenderer/configSchema.d.ts +3 -3
- package/esm/MultiDensityRenderer/configSchema.js +1 -1
- package/esm/MultiDensityRenderer/index.js +4 -4
- package/esm/MultiDensityRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiDensityRenderer/makeImageData.js +7 -0
- package/esm/MultiDensityRenderer/renderMultiDensity.d.ts +3 -0
- package/esm/MultiDensityRenderer/renderMultiDensity.js +37 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +5 -7
- package/esm/MultiLineRenderer/MultiLineRenderer.js +6 -17
- package/esm/MultiLineRenderer/configSchema.d.ts +5 -5
- package/esm/MultiLineRenderer/configSchema.js +2 -2
- package/esm/MultiLineRenderer/index.js +4 -4
- package/esm/MultiLineRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiLineRenderer/makeImageData.js +7 -0
- package/esm/MultiLineRenderer/renderMultiLine.d.ts +3 -0
- package/esm/MultiLineRenderer/renderMultiLine.js +34 -0
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +11 -5
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +4 -4
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +5 -5
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +2 -4
- package/esm/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +12 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItemText.js +11 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +4 -3
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -34
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -4
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +15 -12
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +3 -3
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +13 -6
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +24 -21
- package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +5 -16
- package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.js +15 -0
- package/esm/MultiLinearWiggleDisplay/components/types.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/types.js +1 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.d.ts +31 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +45 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +81 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.js +4 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.js +39 -0
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +5 -9
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +9 -9
- package/esm/MultiLinearWiggleDisplay/configSchema.js +2 -2
- package/esm/MultiLinearWiggleDisplay/index.js +3 -3
- package/esm/MultiLinearWiggleDisplay/model.d.ts +3628 -93
- package/esm/MultiLinearWiggleDisplay/model.js +80 -50
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +3 -2
- package/esm/MultiLinearWiggleDisplay/types.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/util.d.ts +0 -1
- package/esm/MultiLinearWiggleDisplay/util.js +1 -7
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +16 -11
- package/esm/MultiQuantitativeTrack/index.js +13 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +5 -7
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +6 -29
- package/esm/MultiRowLineRenderer/configSchema.d.ts +5 -5
- package/esm/MultiRowLineRenderer/configSchema.js +2 -2
- package/esm/MultiRowLineRenderer/index.js +4 -4
- package/esm/MultiRowLineRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiRowLineRenderer/makeImageData.js +7 -0
- package/esm/MultiRowLineRenderer/renderMultiRowLine.d.ts +3 -0
- package/esm/MultiRowLineRenderer/renderMultiRowLine.js +44 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +5 -7
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +6 -29
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -2
- package/esm/MultiRowXYPlotRenderer/index.js +4 -4
- package/esm/MultiRowXYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/makeImageData.js +7 -0
- package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.js +42 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +7 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +81 -26
- package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -2
- package/esm/MultiWiggleAdapter/index.js +2 -2
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +4 -5
- package/esm/MultiWiggleAddTrackWorkflow/index.js +2 -2
- package/esm/MultiWiggleRendering.d.ts +7 -7
- package/esm/MultiWiggleRendering.js +9 -7
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +5 -7
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +6 -20
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/MultiXYPlotRenderer/configSchema.js +2 -2
- package/esm/MultiXYPlotRenderer/index.js +4 -4
- package/esm/MultiXYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/makeImageData.js +7 -0
- package/esm/MultiXYPlotRenderer/renderMultiXYPlot.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/renderMultiXYPlot.js +35 -0
- package/esm/QuantitativeTrack/configSchema.d.ts +16 -11
- package/esm/QuantitativeTrack/index.js +13 -2
- package/esm/SVGErrorBox.d.ts +5 -0
- package/esm/SVGErrorBox.js +4 -0
- package/esm/Tooltip.d.ts +1 -3
- package/esm/Tooltip.js +7 -7
- package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +2 -10
- package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.js +3 -15
- package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +1 -1
- package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js +2 -5
- package/esm/WiggleRPC/MultiWiggleGetSources.js +1 -4
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +1 -4
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +10 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +26 -5
- package/esm/WiggleRPC/executeClusterScoreMatrix.d.ts +6 -0
- package/esm/WiggleRPC/executeClusterScoreMatrix.js +15 -0
- package/esm/WiggleRPC/getScoreMatrix.d.ts +1 -1
- package/esm/WiggleRPC/getScoreMatrix.js +9 -6
- package/esm/WiggleRPC/rpcMethods.d.ts +5 -5
- package/esm/WiggleRPC/rpcMethods.js +5 -5
- package/esm/WiggleRPC/types.d.ts +1 -1
- package/esm/WiggleRendering.d.ts +2 -3
- package/esm/WiggleRendering.js +16 -3
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +5 -6
- package/esm/XYPlotRenderer/XYPlotRenderer.js +6 -20
- package/esm/XYPlotRenderer/configSchema.d.ts +5 -5
- package/esm/XYPlotRenderer/configSchema.js +2 -2
- package/esm/XYPlotRenderer/index.d.ts +3 -3
- package/esm/XYPlotRenderer/index.js +14 -12
- package/esm/XYPlotRenderer/makeImageData.d.ts +3 -0
- package/esm/XYPlotRenderer/makeImageData.js +13 -0
- package/esm/XYPlotRenderer/renderXYPlot.d.ts +3 -0
- package/esm/XYPlotRenderer/renderXYPlot.js +23 -0
- package/esm/configSchema.d.ts +3 -3
- package/esm/configSchema.js +1 -1
- package/esm/drawDensity.d.ts +4 -2
- package/esm/drawDensity.js +25 -15
- package/esm/drawLine.d.ts +5 -3
- package/esm/drawLine.js +118 -41
- package/esm/drawXY.d.ts +4 -2
- package/esm/drawXY.js +75 -36
- package/esm/getMultiWiggleSourcesAutorun.d.ts +4 -2
- package/esm/getMultiWiggleSourcesAutorun.js +7 -2
- package/esm/getQuantitativeStats.d.ts +4 -2
- package/esm/getQuantitativeStats.js +18 -7
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -2
- package/esm/getQuantitativeStatsAutorun.js +3 -3
- package/esm/index.d.ts +15 -19
- package/esm/index.js +31 -37
- package/esm/multiRendererHelper.d.ts +7 -0
- package/esm/multiRendererHelper.js +12 -0
- package/esm/saveTrackFormats/bedGraph.d.ts +4 -0
- package/esm/saveTrackFormats/bedGraph.js +11 -0
- package/esm/shared/SharedWiggleConfigSchema.d.ts +5 -5
- package/esm/shared/SharedWiggleConfigSchema.js +1 -1
- package/esm/shared/SharedWiggleMixin.d.ts +1083 -120
- package/esm/shared/SharedWiggleMixin.js +48 -26
- package/esm/shared/YScaleBar.d.ts +1 -1
- package/esm/shared/YScaleBar.js +16 -4
- package/esm/shared/axisPropsFromTickScale.d.ts +7 -0
- package/esm/shared/axisPropsFromTickScale.js +12 -0
- package/esm/svgExportUtil.d.ts +9 -0
- package/esm/svgExportUtil.js +6 -0
- package/esm/types.d.ts +24 -0
- package/esm/types.js +1 -0
- package/esm/util.d.ts +35 -1
- package/esm/util.js +61 -2
- package/package.json +35 -38
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +0 -25
- package/dist/BigWigAdapter/BigWigAdapter.js +0 -81
- package/dist/BigWigAdapter/configSchema.d.ts +0 -20
- package/dist/BigWigAdapter/configSchema.js +0 -37
- package/dist/BigWigAdapter/index.d.ts +0 -2
- package/dist/BigWigAdapter/index.js +0 -54
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -8
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -26
- package/dist/CreateMultiWiggleExtension/index.d.ts +0 -2
- package/dist/CreateMultiWiggleExtension/index.js +0 -95
- package/dist/DensityRenderer/DensityRenderer.d.ts +0 -7
- package/dist/DensityRenderer/DensityRenderer.js +0 -46
- package/dist/DensityRenderer/configSchema.d.ts +0 -37
- package/dist/DensityRenderer/configSchema.js +0 -13
- package/dist/DensityRenderer/index.d.ts +0 -2
- package/dist/DensityRenderer/index.js +0 -17
- package/dist/GuessAdapter/index.d.ts +0 -2
- package/dist/GuessAdapter/index.js +0 -25
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +0 -8
- package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -56
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -43
- package/dist/LinePlotRenderer/configSchema.js +0 -19
- package/dist/LinePlotRenderer/index.d.ts +0 -2
- package/dist/LinePlotRenderer/index.js +0 -17
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -12
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -31
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +0 -15
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -32
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -28
- package/dist/LinearWiggleDisplay/configSchema.d.ts +0 -78
- package/dist/LinearWiggleDisplay/configSchema.js +0 -29
- package/dist/LinearWiggleDisplay/index.d.ts +0 -5
- package/dist/LinearWiggleDisplay/index.js +0 -65
- package/dist/LinearWiggleDisplay/model.d.ts +0 -419
- package/dist/LinearWiggleDisplay/model.js +0 -262
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +0 -3
- package/dist/LinearWiggleDisplay/renderSvg.js +0 -16
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +0 -8
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +0 -65
- package/dist/MultiDensityRenderer/configSchema.d.ts +0 -37
- package/dist/MultiDensityRenderer/configSchema.js +0 -13
- package/dist/MultiDensityRenderer/index.d.ts +0 -2
- package/dist/MultiDensityRenderer/index.js +0 -17
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +0 -8
- package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -58
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -49
- package/dist/MultiLineRenderer/configSchema.js +0 -26
- package/dist/MultiLineRenderer/index.d.ts +0 -2
- package/dist/MultiLineRenderer/index.js +0 -17
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -18
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +0 -17
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +0 -15
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +0 -11
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +0 -19
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +0 -8
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +0 -9
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +0 -5
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +0 -19
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -9
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -42
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +0 -130
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +0 -18
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -35
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +0 -6
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +0 -29
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +0 -79
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +0 -145
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.js +0 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -14
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +0 -7
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +0 -28
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +0 -13
- package/dist/MultiLinearWiggleDisplay/components/util.js +0 -45
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +0 -84
- package/dist/MultiLinearWiggleDisplay/configSchema.js +0 -44
- package/dist/MultiLinearWiggleDisplay/index.d.ts +0 -2
- package/dist/MultiLinearWiggleDisplay/index.js +0 -57
- package/dist/MultiLinearWiggleDisplay/model.d.ts +0 -436
- package/dist/MultiLinearWiggleDisplay/model.js +0 -413
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +0 -15
- package/dist/MultiLinearWiggleDisplay/types.d.ts +0 -14
- package/dist/MultiLinearWiggleDisplay/types.js +0 -2
- package/dist/MultiLinearWiggleDisplay/util.d.ts +0 -1
- package/dist/MultiLinearWiggleDisplay/util.js +0 -10
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +0 -80
- package/dist/MultiQuantitativeTrack/configSchema.js +0 -11
- package/dist/MultiQuantitativeTrack/index.d.ts +0 -2
- package/dist/MultiQuantitativeTrack/index.js +0 -20
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +0 -8
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +0 -70
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -49
- package/dist/MultiRowLineRenderer/configSchema.js +0 -26
- package/dist/MultiRowLineRenderer/index.d.ts +0 -2
- package/dist/MultiRowLineRenderer/index.js +0 -17
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +0 -8
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +0 -70
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -34
- package/dist/MultiRowXYPlotRenderer/index.d.ts +0 -2
- package/dist/MultiRowXYPlotRenderer/index.js +0 -17
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +0 -30
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -85
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -13
- package/dist/MultiWiggleAdapter/configSchema.js +0 -17
- package/dist/MultiWiggleAdapter/index.d.ts +0 -2
- package/dist/MultiWiggleAdapter/index.js +0 -57
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +0 -5
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +0 -89
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +0 -2
- package/dist/MultiWiggleAddTrackWorkflow/index.js +0 -46
- package/dist/MultiWiggleRendering.d.ts +0 -19
- package/dist/MultiWiggleRendering.js +0 -81
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +0 -8
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -61
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/MultiXYPlotRenderer/configSchema.js +0 -34
- package/dist/MultiXYPlotRenderer/index.d.ts +0 -2
- package/dist/MultiXYPlotRenderer/index.js +0 -17
- package/dist/QuantitativeTrack/configSchema.d.ts +0 -80
- package/dist/QuantitativeTrack/configSchema.js +0 -11
- package/dist/QuantitativeTrack/index.d.ts +0 -2
- package/dist/QuantitativeTrack/index.js +0 -20
- package/dist/Tooltip.d.ts +0 -18
- package/dist/Tooltip.js +0 -34
- package/dist/WiggleBaseRenderer.d.ts +0 -57
- package/dist/WiggleBaseRenderer.js +0 -42
- package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +0 -14
- package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.js +0 -31
- package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +0 -6
- package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.js +0 -22
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +0 -14
- package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -22
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +0 -12
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -22
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +0 -13
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -22
- package/dist/WiggleRPC/getScoreMatrix.d.ts +0 -6
- package/dist/WiggleRPC/getScoreMatrix.js +0 -35
- package/dist/WiggleRPC/rpcMethods.d.ts +0 -5
- package/dist/WiggleRPC/rpcMethods.js +0 -21
- package/dist/WiggleRPC/type.d.ts +0 -0
- package/dist/WiggleRPC/type.js +0 -1
- package/dist/WiggleRPC/types.d.ts +0 -13
- package/dist/WiggleRPC/types.js +0 -2
- package/dist/WiggleRendering.d.ts +0 -14
- package/dist/WiggleRendering.js +0 -35
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +0 -7
- package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -61
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -57
- package/dist/XYPlotRenderer/configSchema.js +0 -34
- package/dist/XYPlotRenderer/index.d.ts +0 -5
- package/dist/XYPlotRenderer/index.js +0 -24
- package/dist/configSchema.d.ts +0 -37
- package/dist/configSchema.js +0 -47
- package/dist/drawDensity.d.ts +0 -18
- package/dist/drawDensity.js +0 -81
- package/dist/drawLine.d.ts +0 -20
- package/dist/drawLine.js +0 -77
- package/dist/drawXY.d.ts +0 -21
- package/dist/drawXY.js +0 -191
- package/dist/getMultiWiggleSourcesAutorun.d.ts +0 -17
- package/dist/getMultiWiggleSourcesAutorun.js +0 -38
- package/dist/getQuantitativeStats.d.ts +0 -13
- package/dist/getQuantitativeStats.js +0 -70
- package/dist/getQuantitativeStatsAutorun.d.ts +0 -13
- package/dist/getQuantitativeStatsAutorun.js +0 -35
- package/dist/index.d.ts +0 -91
- package/dist/index.js +0 -112
- package/dist/shared/SetMinMaxDialog.d.ts +0 -10
- package/dist/shared/SetMinMaxDialog.js +0 -26
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -66
- package/dist/shared/SharedWiggleConfigSchema.js +0 -56
- package/dist/shared/SharedWiggleMixin.d.ts +0 -405
- package/dist/shared/SharedWiggleMixin.js +0 -343
- package/dist/shared/YScaleBar.d.ts +0 -9
- package/dist/shared/YScaleBar.js +0 -12
- package/dist/util.d.ts +0 -24
- package/dist/util.js +0 -105
- package/esm/WiggleBaseRenderer.d.ts +0 -57
- package/esm/WiggleBaseRenderer.js +0 -36
- package/esm/WiggleRPC/type.d.ts +0 -0
- package/esm/WiggleRPC/type.js +0 -1
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import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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} & {
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userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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} & {
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blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
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key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
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reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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stopToken:
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filled: boolean;
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reactElement: React.ReactElement | undefined;
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features: Map<string, Feature> | undefined;
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}) => import("react/jsx-runtime").JSX.Element;
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isRenderingPending: boolean;
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cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
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setStatusMessage(message: string): void;
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setLoading(newStopToken: StopToken): void;
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setMessage(messageText: string): void;
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setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
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setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
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afterAttach(): void;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
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}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
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resolution: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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negColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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scale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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autoscale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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}>;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack:
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readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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readonly parentDisplay: any;
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readonly effectiveRpcDriverName: any;
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} & {
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renderProps(): any;
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renderingProps(): {
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displayModel: {
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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} & {
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readonly RenderingComponent: React.FC<{
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model: {
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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doReload(): void;
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|
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setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
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|
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|
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} & {
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|
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} & {
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afterAttach(): void;
|
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|
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
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key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
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region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
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reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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}, {
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stopToken: StopToken | undefined;
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filled: boolean;
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|
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blockStatusMessage: string;
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message: string | undefined;
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|
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|
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ReactComponent: ({ model, }: {
|
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model: {
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+
error?: unknown;
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|
+
reload: () => void;
|
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|
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message?: React.ReactNode;
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|
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statusMessage?: string;
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|
+
reactElement?: React.ReactElement;
|
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|
+
isRenderingPending?: boolean;
|
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|
+
};
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|
+
}) => import("react/jsx-runtime").JSX.Element;
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|
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renderProps: any;
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|
+
renderArgs: Record<string, unknown> | undefined;
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|
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isRenderingPending: boolean;
|
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|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
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|
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} & {
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|
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doReload(): void;
|
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|
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setStatusMessage(message: string): void;
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|
+
setLoading(newStopToken: StopToken): void;
|
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|
+
setMessage(messageText: string): void;
|
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|
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setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
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|
+
setError(error: unknown): void;
|
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|
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reload(): void;
|
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|
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setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
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|
+
beforeDestroy(): void;
|
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|
+
} & {
|
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|
+
readonly statusMessage: any;
|
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|
+
} & {
|
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|
+
afterAttach(): void;
|
|
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|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
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|
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configuration: {
|
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458
|
+
[x: string]: any;
|
|
459
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
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|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
461
|
+
[x: string]: any;
|
|
462
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
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|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
464
|
+
[x: string]: any;
|
|
465
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
466
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
467
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
468
|
+
maxFeatureScreenDensity: {
|
|
469
|
+
type: string;
|
|
470
|
+
description: string;
|
|
471
|
+
defaultValue: number;
|
|
472
|
+
};
|
|
473
|
+
fetchSizeLimit: {
|
|
474
|
+
type: string;
|
|
475
|
+
defaultValue: number;
|
|
476
|
+
description: string;
|
|
477
|
+
};
|
|
478
|
+
height: {
|
|
479
|
+
type: string;
|
|
480
|
+
defaultValue: number;
|
|
481
|
+
description: string;
|
|
482
|
+
};
|
|
483
|
+
mouseover: {
|
|
484
|
+
type: string;
|
|
485
|
+
description: string;
|
|
486
|
+
defaultValue: string;
|
|
487
|
+
contextVariable: string[];
|
|
488
|
+
};
|
|
489
|
+
jexlFilters: {
|
|
490
|
+
type: string;
|
|
491
|
+
description: string;
|
|
492
|
+
defaultValue: never[];
|
|
493
|
+
};
|
|
494
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
|
|
495
|
+
showLegend: boolean | undefined;
|
|
496
|
+
showTooltips: boolean | undefined;
|
|
497
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
498
|
+
rendererTypeName: string;
|
|
499
|
+
error: unknown;
|
|
500
|
+
statusMessage: string | undefined;
|
|
501
|
+
} & {
|
|
502
|
+
readonly RenderingComponent: React.FC<{
|
|
503
|
+
model: {
|
|
504
|
+
id: string;
|
|
505
|
+
type: string;
|
|
506
|
+
rpcDriverName: string | undefined;
|
|
507
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
508
|
+
rendererTypeName: string;
|
|
509
|
+
error: unknown;
|
|
510
|
+
statusMessage: string | undefined;
|
|
511
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
512
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
513
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
514
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
515
|
+
}, {
|
|
516
|
+
rendererTypeName: string;
|
|
517
|
+
error: unknown;
|
|
518
|
+
statusMessage: string | undefined;
|
|
519
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
520
|
+
onHorizontalScroll?: () => void;
|
|
521
|
+
blockState?: Record<string, any>;
|
|
522
|
+
}>;
|
|
523
|
+
readonly DisplayBlurb: React.FC<{
|
|
524
|
+
model: {
|
|
525
|
+
id: string;
|
|
526
|
+
type: string;
|
|
527
|
+
rpcDriverName: string | undefined;
|
|
528
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
529
|
+
rendererTypeName: string;
|
|
530
|
+
error: unknown;
|
|
531
|
+
statusMessage: string | undefined;
|
|
532
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
533
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
534
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
535
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
536
|
+
}, {
|
|
537
|
+
rendererTypeName: string;
|
|
538
|
+
error: unknown;
|
|
539
|
+
statusMessage: string | undefined;
|
|
540
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
541
|
+
}> | null;
|
|
542
|
+
readonly adapterConfig: any;
|
|
543
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
544
|
+
readonly parentDisplay: any;
|
|
545
|
+
readonly effectiveRpcDriverName: any;
|
|
546
|
+
} & {
|
|
547
|
+
renderProps(): any;
|
|
548
|
+
renderingProps(): {
|
|
549
|
+
displayModel: {
|
|
550
|
+
id: string;
|
|
551
|
+
type: string;
|
|
552
|
+
rpcDriverName: string | undefined;
|
|
553
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
554
|
+
rendererTypeName: string;
|
|
555
|
+
error: unknown;
|
|
556
|
+
statusMessage: string | undefined;
|
|
557
|
+
} & {
|
|
558
|
+
readonly RenderingComponent: React.FC<{
|
|
559
|
+
model: {
|
|
560
|
+
id: string;
|
|
561
|
+
type: string;
|
|
562
|
+
rpcDriverName: string | undefined;
|
|
563
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
564
|
+
rendererTypeName: string;
|
|
565
|
+
error: unknown;
|
|
566
|
+
statusMessage: string | undefined;
|
|
567
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
568
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
569
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
570
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
571
|
+
}, {
|
|
572
|
+
rendererTypeName: string;
|
|
573
|
+
error: unknown;
|
|
574
|
+
statusMessage: string | undefined;
|
|
575
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
576
|
+
onHorizontalScroll?: () => void;
|
|
577
|
+
blockState?: Record<string, any>;
|
|
578
|
+
}>;
|
|
579
|
+
readonly DisplayBlurb: React.FC<{
|
|
580
|
+
model: {
|
|
581
|
+
id: string;
|
|
582
|
+
type: string;
|
|
583
|
+
rpcDriverName: string | undefined;
|
|
584
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
585
|
+
rendererTypeName: string;
|
|
586
|
+
error: unknown;
|
|
587
|
+
statusMessage: string | undefined;
|
|
588
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
589
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
590
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
591
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
592
|
+
}, {
|
|
593
|
+
rendererTypeName: string;
|
|
594
|
+
error: unknown;
|
|
595
|
+
statusMessage: string | undefined;
|
|
596
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
597
|
+
}> | null;
|
|
598
|
+
readonly adapterConfig: any;
|
|
599
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
600
|
+
readonly parentDisplay: any;
|
|
601
|
+
readonly effectiveRpcDriverName: any;
|
|
602
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
603
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
604
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
605
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
606
|
+
}, {
|
|
607
|
+
rendererTypeName: string;
|
|
608
|
+
error: unknown;
|
|
609
|
+
statusMessage: string | undefined;
|
|
610
|
+
} & {
|
|
611
|
+
readonly RenderingComponent: React.FC<{
|
|
612
|
+
model: {
|
|
613
|
+
id: string;
|
|
614
|
+
type: string;
|
|
615
|
+
rpcDriverName: string | undefined;
|
|
616
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
617
|
+
rendererTypeName: string;
|
|
618
|
+
error: unknown;
|
|
619
|
+
statusMessage: string | undefined;
|
|
620
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
621
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
622
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
623
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
624
|
+
}, {
|
|
625
|
+
rendererTypeName: string;
|
|
626
|
+
error: unknown;
|
|
627
|
+
statusMessage: string | undefined;
|
|
628
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
629
|
+
onHorizontalScroll?: () => void;
|
|
630
|
+
blockState?: Record<string, any>;
|
|
631
|
+
}>;
|
|
632
|
+
readonly DisplayBlurb: React.FC<{
|
|
633
|
+
model: {
|
|
634
|
+
id: string;
|
|
635
|
+
type: string;
|
|
636
|
+
rpcDriverName: string | undefined;
|
|
637
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
638
|
+
rendererTypeName: string;
|
|
639
|
+
error: unknown;
|
|
640
|
+
statusMessage: string | undefined;
|
|
641
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
642
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
643
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
644
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
645
|
+
}, {
|
|
646
|
+
rendererTypeName: string;
|
|
647
|
+
error: unknown;
|
|
648
|
+
statusMessage: string | undefined;
|
|
649
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
650
|
+
}> | null;
|
|
651
|
+
readonly adapterConfig: any;
|
|
652
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
653
|
+
readonly parentDisplay: any;
|
|
654
|
+
readonly effectiveRpcDriverName: any;
|
|
655
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
656
|
+
};
|
|
657
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
658
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
659
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
660
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
661
|
+
regionCannotBeRendered(): null;
|
|
662
|
+
} & {
|
|
663
|
+
setStatusMessage(arg?: string): void;
|
|
664
|
+
setError(error?: unknown): void;
|
|
665
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
666
|
+
reload(): void;
|
|
667
|
+
} & {
|
|
668
|
+
scrollTop: number;
|
|
669
|
+
} & {
|
|
670
|
+
readonly height: number;
|
|
671
|
+
} & {
|
|
672
|
+
setScrollTop(scrollTop: number): void;
|
|
673
|
+
setHeight(displayHeight: number): number;
|
|
674
|
+
resizeHeight(distance: number): number;
|
|
675
|
+
} & {
|
|
676
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
677
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
678
|
+
currStatsBpPerPx: number;
|
|
679
|
+
} & {
|
|
680
|
+
readonly currentBytesRequested: number;
|
|
681
|
+
readonly currentFeatureScreenDensity: number;
|
|
682
|
+
readonly maxFeatureScreenDensity: any;
|
|
683
|
+
readonly featureDensityStatsReady: boolean;
|
|
684
|
+
readonly maxAllowableBytes: number;
|
|
685
|
+
} & {
|
|
686
|
+
afterAttach(): void;
|
|
687
|
+
} & {
|
|
688
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
689
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
690
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
691
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
692
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
693
|
+
clearFeatureDensityStats(): void;
|
|
694
|
+
} & {
|
|
695
|
+
readonly regionTooLarge: boolean;
|
|
696
|
+
readonly regionTooLargeReason: string;
|
|
697
|
+
} & {
|
|
698
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
699
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
700
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
701
|
+
} & {
|
|
702
|
+
mouseoverExtraInformation: string | undefined;
|
|
703
|
+
featureIdUnderMouse: undefined | string;
|
|
704
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
705
|
+
contextMenuFeature: undefined | Feature;
|
|
706
|
+
} & {
|
|
707
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
708
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
709
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
710
|
+
} & {
|
|
711
|
+
readonly renderDelay: number;
|
|
712
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
713
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
714
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
715
|
+
readonly selectedFeatureId: string | undefined;
|
|
716
|
+
readonly featureWidgetType: {
|
|
717
|
+
type: string;
|
|
718
|
+
id: string;
|
|
719
|
+
};
|
|
720
|
+
} & {
|
|
721
|
+
readonly showTooltipsEnabled: boolean;
|
|
722
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
|
|
723
|
+
readonly featureUnderMouse: Feature | undefined;
|
|
724
|
+
getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
|
|
725
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
726
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
727
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
728
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
729
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
730
|
+
} & {
|
|
731
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
732
|
+
deleteBlock(key: string): void;
|
|
733
|
+
selectFeature(feature: Feature): void;
|
|
734
|
+
navToFeature(feature: Feature): void;
|
|
735
|
+
clearFeatureSelection(): void;
|
|
736
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
737
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
738
|
+
setContextMenuFeature(feature?: Feature): void;
|
|
739
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
740
|
+
setShowLegend(s: boolean): void;
|
|
741
|
+
setShowTooltips(arg: boolean): void;
|
|
742
|
+
} & {
|
|
743
|
+
reload(): Promise<void>;
|
|
744
|
+
} & {
|
|
745
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
746
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
747
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
748
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
749
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
750
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
751
|
+
} & {
|
|
752
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
753
|
+
} & {
|
|
754
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
755
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
756
|
+
} & {
|
|
757
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
758
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
759
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
760
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
761
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
762
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
763
|
+
}, {
|
|
764
|
+
stopToken: StopToken | undefined;
|
|
765
|
+
filled: boolean;
|
|
766
|
+
reactElement: React.ReactElement | undefined;
|
|
767
|
+
features: Map<string, Feature> | undefined;
|
|
768
|
+
layout: any;
|
|
769
|
+
blockStatusMessage: string;
|
|
770
|
+
error: unknown;
|
|
771
|
+
message: string | undefined;
|
|
772
|
+
maxHeightReached: boolean;
|
|
773
|
+
ReactComponent: ({ model, }: {
|
|
774
|
+
model: {
|
|
775
|
+
error?: unknown;
|
|
776
|
+
reload: () => void;
|
|
777
|
+
message?: React.ReactNode;
|
|
778
|
+
statusMessage?: string;
|
|
779
|
+
reactElement?: React.ReactElement;
|
|
780
|
+
isRenderingPending?: boolean;
|
|
781
|
+
};
|
|
782
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
783
|
+
renderProps: any;
|
|
784
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
785
|
+
isRenderingPending: boolean;
|
|
786
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
787
|
+
} & {
|
|
788
|
+
doReload(): void;
|
|
789
|
+
setStatusMessage(message: string): void;
|
|
790
|
+
setLoading(newStopToken: StopToken): void;
|
|
791
|
+
setMessage(messageText: string): void;
|
|
792
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
793
|
+
setError(error: unknown): void;
|
|
794
|
+
reload(): void;
|
|
795
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
796
|
+
beforeDestroy(): void;
|
|
797
|
+
} & {
|
|
798
|
+
readonly statusMessage: any;
|
|
799
|
+
} & {
|
|
800
|
+
afterAttach(): void;
|
|
801
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
802
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
803
|
+
maxFeatureScreenDensity: {
|
|
804
|
+
type: string;
|
|
805
|
+
description: string;
|
|
806
|
+
defaultValue: number;
|
|
807
|
+
};
|
|
808
|
+
fetchSizeLimit: {
|
|
809
|
+
type: string;
|
|
810
|
+
defaultValue: number;
|
|
811
|
+
description: string;
|
|
812
|
+
};
|
|
813
|
+
height: {
|
|
814
|
+
type: string;
|
|
815
|
+
defaultValue: number;
|
|
816
|
+
description: string;
|
|
817
|
+
};
|
|
818
|
+
mouseover: {
|
|
819
|
+
type: string;
|
|
820
|
+
description: string;
|
|
821
|
+
defaultValue: string;
|
|
822
|
+
contextVariable: string[];
|
|
823
|
+
};
|
|
824
|
+
jexlFilters: {
|
|
825
|
+
type: string;
|
|
826
|
+
description: string;
|
|
827
|
+
defaultValue: never[];
|
|
828
|
+
};
|
|
829
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
830
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
831
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
832
|
+
}, {
|
|
833
|
+
rendererTypeName: string;
|
|
834
|
+
error: unknown;
|
|
835
|
+
statusMessage: string | undefined;
|
|
836
|
+
} & {
|
|
837
|
+
readonly RenderingComponent: React.FC<{
|
|
838
|
+
model: {
|
|
839
|
+
id: string;
|
|
840
|
+
type: string;
|
|
841
|
+
rpcDriverName: string | undefined;
|
|
842
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
843
|
+
rendererTypeName: string;
|
|
844
|
+
error: unknown;
|
|
845
|
+
statusMessage: string | undefined;
|
|
846
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
847
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
848
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
849
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
850
|
+
}, {
|
|
851
|
+
rendererTypeName: string;
|
|
852
|
+
error: unknown;
|
|
853
|
+
statusMessage: string | undefined;
|
|
854
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
855
|
+
onHorizontalScroll?: () => void;
|
|
856
|
+
blockState?: Record<string, any>;
|
|
857
|
+
}>;
|
|
858
|
+
readonly DisplayBlurb: React.FC<{
|
|
859
|
+
model: {
|
|
860
|
+
id: string;
|
|
861
|
+
type: string;
|
|
862
|
+
rpcDriverName: string | undefined;
|
|
863
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
864
|
+
rendererTypeName: string;
|
|
865
|
+
error: unknown;
|
|
866
|
+
statusMessage: string | undefined;
|
|
867
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
868
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
869
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
870
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
871
|
+
}, {
|
|
872
|
+
rendererTypeName: string;
|
|
873
|
+
error: unknown;
|
|
874
|
+
statusMessage: string | undefined;
|
|
875
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
876
|
+
}> | null;
|
|
877
|
+
readonly adapterConfig: any;
|
|
878
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
879
|
+
readonly parentDisplay: any;
|
|
880
|
+
readonly effectiveRpcDriverName: any;
|
|
881
|
+
} & {
|
|
882
|
+
renderProps(): any;
|
|
883
|
+
renderingProps(): {
|
|
884
|
+
displayModel: {
|
|
885
|
+
id: string;
|
|
886
|
+
type: string;
|
|
887
|
+
rpcDriverName: string | undefined;
|
|
888
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
889
|
+
rendererTypeName: string;
|
|
890
|
+
error: unknown;
|
|
891
|
+
statusMessage: string | undefined;
|
|
892
|
+
} & {
|
|
893
|
+
readonly RenderingComponent: React.FC<{
|
|
894
|
+
model: {
|
|
895
|
+
id: string;
|
|
896
|
+
type: string;
|
|
897
|
+
rpcDriverName: string | undefined;
|
|
898
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
899
|
+
rendererTypeName: string;
|
|
900
|
+
error: unknown;
|
|
901
|
+
statusMessage: string | undefined;
|
|
902
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
903
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
904
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
905
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
906
|
+
}, {
|
|
907
|
+
rendererTypeName: string;
|
|
908
|
+
error: unknown;
|
|
909
|
+
statusMessage: string | undefined;
|
|
910
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
911
|
+
onHorizontalScroll?: () => void;
|
|
912
|
+
blockState?: Record<string, any>;
|
|
913
|
+
}>;
|
|
914
|
+
readonly DisplayBlurb: React.FC<{
|
|
915
|
+
model: {
|
|
916
|
+
id: string;
|
|
917
|
+
type: string;
|
|
918
|
+
rpcDriverName: string | undefined;
|
|
919
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
920
|
+
rendererTypeName: string;
|
|
921
|
+
error: unknown;
|
|
922
|
+
statusMessage: string | undefined;
|
|
923
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
924
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
925
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
926
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
927
|
+
}, {
|
|
928
|
+
rendererTypeName: string;
|
|
929
|
+
error: unknown;
|
|
930
|
+
statusMessage: string | undefined;
|
|
931
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
932
|
+
}> | null;
|
|
933
|
+
readonly adapterConfig: any;
|
|
934
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
935
|
+
readonly parentDisplay: any;
|
|
936
|
+
readonly effectiveRpcDriverName: any;
|
|
937
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
938
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
939
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
940
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
941
|
+
}, {
|
|
942
|
+
rendererTypeName: string;
|
|
943
|
+
error: unknown;
|
|
944
|
+
statusMessage: string | undefined;
|
|
945
|
+
} & {
|
|
946
|
+
readonly RenderingComponent: React.FC<{
|
|
947
|
+
model: {
|
|
948
|
+
id: string;
|
|
949
|
+
type: string;
|
|
950
|
+
rpcDriverName: string | undefined;
|
|
951
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
952
|
+
rendererTypeName: string;
|
|
953
|
+
error: unknown;
|
|
954
|
+
statusMessage: string | undefined;
|
|
955
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
956
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
957
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
958
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
959
|
+
}, {
|
|
960
|
+
rendererTypeName: string;
|
|
961
|
+
error: unknown;
|
|
962
|
+
statusMessage: string | undefined;
|
|
963
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
964
|
+
onHorizontalScroll?: () => void;
|
|
965
|
+
blockState?: Record<string, any>;
|
|
966
|
+
}>;
|
|
967
|
+
readonly DisplayBlurb: React.FC<{
|
|
968
|
+
model: {
|
|
969
|
+
id: string;
|
|
970
|
+
type: string;
|
|
971
|
+
rpcDriverName: string | undefined;
|
|
972
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
973
|
+
rendererTypeName: string;
|
|
974
|
+
error: unknown;
|
|
975
|
+
statusMessage: string | undefined;
|
|
976
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
977
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
978
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
979
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
980
|
+
}, {
|
|
981
|
+
rendererTypeName: string;
|
|
982
|
+
error: unknown;
|
|
983
|
+
statusMessage: string | undefined;
|
|
984
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
985
|
+
}> | null;
|
|
986
|
+
readonly adapterConfig: any;
|
|
987
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
988
|
+
readonly parentDisplay: any;
|
|
989
|
+
readonly effectiveRpcDriverName: any;
|
|
990
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
991
|
+
};
|
|
992
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
993
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
994
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
995
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
996
|
+
regionCannotBeRendered(): null;
|
|
997
|
+
} & {
|
|
998
|
+
setStatusMessage(arg?: string): void;
|
|
999
|
+
setError(error?: unknown): void;
|
|
1000
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
1001
|
+
reload(): void;
|
|
1002
|
+
} & {
|
|
1003
|
+
scrollTop: number;
|
|
1004
|
+
} & {
|
|
1005
|
+
readonly height: number;
|
|
1006
|
+
} & {
|
|
1007
|
+
setScrollTop(scrollTop: number): void;
|
|
1008
|
+
setHeight(displayHeight: number): number;
|
|
1009
|
+
resizeHeight(distance: number): number;
|
|
1010
|
+
} & {
|
|
1011
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1012
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
1013
|
+
currStatsBpPerPx: number;
|
|
1014
|
+
} & {
|
|
1015
|
+
readonly currentBytesRequested: number;
|
|
1016
|
+
readonly currentFeatureScreenDensity: number;
|
|
1017
|
+
readonly maxFeatureScreenDensity: any;
|
|
1018
|
+
readonly featureDensityStatsReady: boolean;
|
|
1019
|
+
readonly maxAllowableBytes: number;
|
|
1020
|
+
} & {
|
|
1021
|
+
afterAttach(): void;
|
|
1022
|
+
} & {
|
|
1023
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
1024
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1025
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1026
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
1027
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1028
|
+
clearFeatureDensityStats(): void;
|
|
1029
|
+
} & {
|
|
1030
|
+
readonly regionTooLarge: boolean;
|
|
1031
|
+
readonly regionTooLargeReason: string;
|
|
1032
|
+
} & {
|
|
1033
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
1034
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
1035
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
1036
|
+
} & {
|
|
1037
|
+
mouseoverExtraInformation: string | undefined;
|
|
1038
|
+
featureIdUnderMouse: undefined | string;
|
|
1039
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
1040
|
+
contextMenuFeature: undefined | Feature;
|
|
1041
|
+
} & {
|
|
1042
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
1043
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
1044
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
1045
|
+
} & {
|
|
1046
|
+
readonly renderDelay: number;
|
|
1047
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
1048
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
1049
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
1050
|
+
readonly selectedFeatureId: string | undefined;
|
|
1051
|
+
readonly featureWidgetType: {
|
|
1052
|
+
type: string;
|
|
1053
|
+
id: string;
|
|
1054
|
+
};
|
|
1055
|
+
} & {
|
|
1056
|
+
readonly showTooltipsEnabled: boolean;
|
|
1057
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
|
|
1058
|
+
readonly featureUnderMouse: Feature | undefined;
|
|
1059
|
+
getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
|
|
1060
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
1061
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
1062
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
1063
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
1064
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
1065
|
+
} & {
|
|
1066
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
1067
|
+
deleteBlock(key: string): void;
|
|
1068
|
+
selectFeature(feature: Feature): void;
|
|
1069
|
+
navToFeature(feature: Feature): void;
|
|
1070
|
+
clearFeatureSelection(): void;
|
|
1071
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
1072
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
1073
|
+
setContextMenuFeature(feature?: Feature): void;
|
|
1074
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
1075
|
+
setShowLegend(s: boolean): void;
|
|
1076
|
+
setShowTooltips(arg: boolean): void;
|
|
1077
|
+
} & {
|
|
1078
|
+
reload(): Promise<void>;
|
|
1079
|
+
} & {
|
|
1080
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1081
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1082
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1083
|
+
onMouseMove(_: unknown, featureId?: string): void;
|
|
1084
|
+
onMouseLeave(_: unknown): void;
|
|
1085
|
+
onContextMenu(_: unknown): void;
|
|
1086
|
+
};
|
|
220
1087
|
renderProps(): any;
|
|
221
1088
|
} & {
|
|
222
1089
|
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
@@ -227,18 +1094,19 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
227
1094
|
currStatsBpPerPx: number;
|
|
228
1095
|
scoreMin: number;
|
|
229
1096
|
scoreMax: number;
|
|
1097
|
+
statsRegion?: string;
|
|
230
1098
|
} | undefined;
|
|
231
|
-
statsFetchInProgress: undefined |
|
|
1099
|
+
statsFetchInProgress: undefined | StopToken;
|
|
232
1100
|
} & {
|
|
233
1101
|
updateQuantitativeStats(stats: {
|
|
234
1102
|
currStatsBpPerPx: number;
|
|
235
1103
|
scoreMin: number;
|
|
236
1104
|
scoreMax: number;
|
|
237
|
-
}): void;
|
|
1105
|
+
}, statsRegion?: string): void;
|
|
238
1106
|
setColor(color?: string): void;
|
|
239
1107
|
setPosColor(color?: string): void;
|
|
240
1108
|
setNegColor(color?: string): void;
|
|
241
|
-
setStatsLoading(arg?:
|
|
1109
|
+
setStatsLoading(arg?: StopToken): void;
|
|
242
1110
|
selectFeature(feature: Feature): void;
|
|
243
1111
|
setResolution(res: number): void;
|
|
244
1112
|
setFill(fill: number): void;
|
|
@@ -260,17 +1128,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
260
1128
|
readonly minScore: number;
|
|
261
1129
|
} & {
|
|
262
1130
|
readonly adapterCapabilities: string[];
|
|
263
|
-
readonly rendererConfig:
|
|
264
|
-
[x: string]: any;
|
|
265
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
266
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
267
|
-
[x: string]: any;
|
|
268
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
269
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
270
|
-
[x: string]: any;
|
|
271
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
272
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
273
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
|
|
1131
|
+
readonly rendererConfig: any;
|
|
274
1132
|
readonly autoscaleType: string;
|
|
275
1133
|
} & {
|
|
276
1134
|
readonly domain: number[] | undefined;
|
|
@@ -283,6 +1141,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
283
1141
|
currStatsBpPerPx: number;
|
|
284
1142
|
scoreMin: number;
|
|
285
1143
|
scoreMax: number;
|
|
1144
|
+
statsRegion?: string;
|
|
286
1145
|
} | undefined;
|
|
287
1146
|
autoscaleType: string;
|
|
288
1147
|
scaleType: string;
|
|
@@ -318,29 +1177,29 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
318
1177
|
reload(): Promise<void>;
|
|
319
1178
|
}, {
|
|
320
1179
|
type: string;
|
|
321
|
-
} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
322
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
323
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
324
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
325
|
-
} & {
|
|
326
|
-
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
327
|
-
} & {
|
|
328
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
329
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
330
|
-
} & {
|
|
331
|
-
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
332
|
-
key: import("mobx-state-tree").ISimpleType<string>;
|
|
333
|
-
region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
334
|
-
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
335
|
-
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
336
|
-
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1180
|
+
} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
1181
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1182
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1183
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1184
|
+
} & {
|
|
1185
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1186
|
+
} & {
|
|
1187
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1188
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1189
|
+
} & {
|
|
1190
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1191
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1192
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1193
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1194
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1195
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
337
1196
|
}, {
|
|
338
|
-
stopToken:
|
|
1197
|
+
stopToken: StopToken | undefined;
|
|
339
1198
|
filled: boolean;
|
|
340
1199
|
reactElement: React.ReactElement | undefined;
|
|
341
1200
|
features: Map<string, Feature> | undefined;
|
|
342
1201
|
layout: any;
|
|
343
|
-
|
|
1202
|
+
blockStatusMessage: string;
|
|
344
1203
|
error: unknown;
|
|
345
1204
|
message: string | undefined;
|
|
346
1205
|
maxHeightReached: boolean;
|
|
@@ -348,25 +1207,117 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
348
1207
|
model: {
|
|
349
1208
|
error?: unknown;
|
|
350
1209
|
reload: () => void;
|
|
351
|
-
message
|
|
352
|
-
|
|
353
|
-
status?: string;
|
|
1210
|
+
message?: React.ReactNode;
|
|
1211
|
+
statusMessage?: string;
|
|
354
1212
|
reactElement?: React.ReactElement;
|
|
1213
|
+
isRenderingPending?: boolean;
|
|
355
1214
|
};
|
|
356
|
-
}) => import("react/jsx-runtime").JSX.Element
|
|
1215
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
357
1216
|
renderProps: any;
|
|
1217
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
1218
|
+
isRenderingPending: boolean;
|
|
1219
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
358
1220
|
} & {
|
|
359
1221
|
doReload(): void;
|
|
1222
|
+
setStatusMessage(message: string): void;
|
|
1223
|
+
setLoading(newStopToken: StopToken): void;
|
|
1224
|
+
setMessage(messageText: string): void;
|
|
1225
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
1226
|
+
setError(error: unknown): void;
|
|
1227
|
+
reload(): void;
|
|
1228
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
1229
|
+
beforeDestroy(): void;
|
|
1230
|
+
} & {
|
|
1231
|
+
readonly statusMessage: any;
|
|
1232
|
+
} & {
|
|
360
1233
|
afterAttach(): void;
|
|
361
|
-
|
|
362
|
-
|
|
1234
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1235
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
1236
|
+
maxFeatureScreenDensity: {
|
|
1237
|
+
type: string;
|
|
1238
|
+
description: string;
|
|
1239
|
+
defaultValue: number;
|
|
1240
|
+
};
|
|
1241
|
+
fetchSizeLimit: {
|
|
1242
|
+
type: string;
|
|
1243
|
+
defaultValue: number;
|
|
1244
|
+
description: string;
|
|
1245
|
+
};
|
|
1246
|
+
height: {
|
|
1247
|
+
type: string;
|
|
1248
|
+
defaultValue: number;
|
|
1249
|
+
description: string;
|
|
1250
|
+
};
|
|
1251
|
+
mouseover: {
|
|
1252
|
+
type: string;
|
|
1253
|
+
description: string;
|
|
1254
|
+
defaultValue: string;
|
|
1255
|
+
contextVariable: string[];
|
|
1256
|
+
};
|
|
1257
|
+
jexlFilters: {
|
|
1258
|
+
type: string;
|
|
1259
|
+
description: string;
|
|
1260
|
+
defaultValue: never[];
|
|
1261
|
+
};
|
|
1262
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
1263
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1264
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1265
|
+
}>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
1266
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1267
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1268
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1269
|
+
} & {
|
|
1270
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1271
|
+
} & {
|
|
1272
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1273
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1274
|
+
} & {
|
|
1275
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1276
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1277
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1278
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1279
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1280
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1281
|
+
}, {
|
|
1282
|
+
stopToken: StopToken | undefined;
|
|
1283
|
+
filled: boolean;
|
|
1284
|
+
reactElement: React.ReactElement | undefined;
|
|
1285
|
+
features: Map<string, Feature> | undefined;
|
|
1286
|
+
layout: any;
|
|
1287
|
+
blockStatusMessage: string;
|
|
1288
|
+
error: unknown;
|
|
1289
|
+
message: string | undefined;
|
|
1290
|
+
maxHeightReached: boolean;
|
|
1291
|
+
ReactComponent: ({ model, }: {
|
|
1292
|
+
model: {
|
|
1293
|
+
error?: unknown;
|
|
1294
|
+
reload: () => void;
|
|
1295
|
+
message?: React.ReactNode;
|
|
1296
|
+
statusMessage?: string;
|
|
1297
|
+
reactElement?: React.ReactElement;
|
|
1298
|
+
isRenderingPending?: boolean;
|
|
1299
|
+
};
|
|
1300
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
1301
|
+
renderProps: any;
|
|
1302
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
1303
|
+
isRenderingPending: boolean;
|
|
1304
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
1305
|
+
} & {
|
|
1306
|
+
doReload(): void;
|
|
1307
|
+
setStatusMessage(message: string): void;
|
|
1308
|
+
setLoading(newStopToken: StopToken): void;
|
|
363
1309
|
setMessage(messageText: string): void;
|
|
364
|
-
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
|
|
1310
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
365
1311
|
setError(error: unknown): void;
|
|
366
1312
|
reload(): void;
|
|
1313
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
367
1314
|
beforeDestroy(): void;
|
|
368
|
-
}
|
|
369
|
-
|
|
1315
|
+
} & {
|
|
1316
|
+
readonly statusMessage: any;
|
|
1317
|
+
} & {
|
|
1318
|
+
afterAttach(): void;
|
|
1319
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1320
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
370
1321
|
maxFeatureScreenDensity: {
|
|
371
1322
|
type: string;
|
|
372
1323
|
description: string;
|
|
@@ -393,13 +1344,25 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
|
|
|
393
1344
|
description: string;
|
|
394
1345
|
defaultValue: never[];
|
|
395
1346
|
};
|
|
396
|
-
}, import("
|
|
397
|
-
|
|
398
|
-
|
|
399
|
-
|
|
400
|
-
|
|
401
|
-
|
|
402
|
-
|
|
403
|
-
|
|
404
|
-
|
|
405
|
-
|
|
1347
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
1348
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1349
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1350
|
+
} & {
|
|
1351
|
+
selectedRendering: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1352
|
+
resolution: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
1353
|
+
fill: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1354
|
+
minSize: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1355
|
+
color: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1356
|
+
posColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1357
|
+
negColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1358
|
+
summaryScoreMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1359
|
+
rendererTypeNameState: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1360
|
+
scale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1361
|
+
autoscale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1362
|
+
displayCrossHatches: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
1363
|
+
constraints: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1364
|
+
max: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1365
|
+
min: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
1366
|
+
}, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
1367
|
+
configuration: AnyConfigurationSchemaType;
|
|
1368
|
+
}>>;
|