@jbrowse/plugin-wiggle 3.6.5 → 4.0.0

package/dist/MultiRowLineRenderer/configSchema.d.ts

@@ -1,49 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    displayCrossHatches: {
-        type: string;
-        description: string;
-        defaultValue: boolean;
-    };
-    summaryScoreMode: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
-export default configSchema;

package/dist/MultiRowLineRenderer/configSchema.js

@@ -1,26 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configSchema_1 = __importDefault(require("../configSchema"));
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRenderer', {
-    displayCrossHatches: {
-        type: 'boolean',
-        description: 'choose to draw cross hatches (sideways lines)',
-        defaultValue: false,
-    },
-    summaryScoreMode: {
-        type: 'stringEnum',
-        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
-        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
-        defaultValue: 'avg',
-    },
-}, {
-    baseConfiguration: configSchema_1.default,
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/MultiRowLineRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function MultiRowLineRendererF(pluginManager: PluginManager): void;

package/dist/MultiRowLineRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = MultiRowLineRendererF;
-const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
-const MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function MultiRowLineRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new MultiRowLineRenderer_1.default({
-        name: 'MultiRowLineRenderer',
-        ReactComponent: MultiWiggleRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts

@@ -1,8 +0,0 @@
-import WiggleBaseRenderer from '../WiggleBaseRenderer';
-import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
-import type { Feature } from '@jbrowse/core/util';
-export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
-        reducedFeatures: Feature[];
-    }>;
-}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -1,70 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("@jbrowse/core/util");
-const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
-    async draw(ctx, props) {
-        const { stopToken, bpPerPx, sources, regions, features } = props;
-        const region = regions[0];
-        const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
-        const height = props.height / sources.length;
-        const width = (region.end - region.start) / bpPerPx;
-        const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
-        let feats = [];
-        ctx.save();
-        (0, util_1.forEachWithStopTokenCheck)(sources, stopToken, source => {
-            const { reducedFeatures } = drawXY(ctx, {
-                ...props,
-                features: groups[source.name] || [],
-                height,
-                colorCallback: () => source.color || 'blue',
-            });
-            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
-            ctx.beginPath();
-            ctx.moveTo(0, height);
-            ctx.lineTo(width, height);
-            ctx.stroke();
-            ctx.translate(0, height);
-            feats = feats.concat(reducedFeatures);
-        });
-        ctx.restore();
-        return { reducedFeatures: feats };
-    }
-}
-exports.default = MultiXYPlotRenderer;

package/dist/MultiRowXYPlotRenderer/configSchema.d.ts

@@ -1,57 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    filled: {
-        type: string;
-        defaultValue: boolean;
-    };
-    displayCrossHatches: {
-        type: string;
-        description: string;
-        defaultValue: boolean;
-    };
-    summaryScoreMode: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    minSize: {
-        type: string;
-        defaultValue: number;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    posColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    negColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    clipColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivot: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-        defaultValue: string;
-    };
-    bicolorPivotValue: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
-export default configSchema;

package/dist/MultiRowXYPlotRenderer/configSchema.js

@@ -1,34 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configSchema_1 = __importDefault(require("../configSchema"));
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRenderer', {
-    filled: {
-        type: 'boolean',
-        defaultValue: true,
-    },
-    displayCrossHatches: {
-        type: 'boolean',
-        description: 'choose to draw cross hatches (sideways lines)',
-        defaultValue: false,
-    },
-    summaryScoreMode: {
-        type: 'stringEnum',
-        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
-        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
-        defaultValue: 'whiskers',
-    },
-    minSize: {
-        type: 'number',
-        defaultValue: 0.7,
-    },
-}, {
-    baseConfiguration: configSchema_1.default,
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/MultiRowXYPlotRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function MultiRowXYPlotRendererF(pluginManager: PluginManager): void;

package/dist/MultiRowXYPlotRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = MultiRowXYPlotRendererF;
-const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
-const MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function MultiRowXYPlotRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new MultiRowXYPlotRenderer_1.default({
-        name: 'MultiRowXYPlotRenderer',
-        ReactComponent: MultiWiggleRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts

@@ -1,30 +0,0 @@
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { Feature } from '@jbrowse/core/util';
-import type { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-interface WiggleOptions extends BaseOptions {
-    resolution?: number;
-}
-interface AdapterEntry {
-    dataAdapter: BaseFeatureDataAdapter;
-    source: string;
-    [key: string]: unknown;
-}
-export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
-    static capabilities: string[];
-    getAdapters(): Promise<AdapterEntry[]>;
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    getGlobalStats(opts?: BaseOptions): Promise<{
-        scoreMin: number;
-        scoreMax: number;
-    }>;
-    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
-    getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
-        featureDensity: number;
-    }>;
-    getSources(_regions: Region[]): Promise<{
-        name: string;
-        __name: unknown;
-    }[]>;
-}
-export {};

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js

@@ -1,85 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const util_1 = require("@jbrowse/core/util");
-const rxjs_1 = require("@jbrowse/core/util/rxjs");
-const rxjs_2 = require("rxjs");
-const operators_1 = require("rxjs/operators");
-function getFilename(uri) {
-    const filename = uri.slice(uri.lastIndexOf('/') + 1);
-    return filename.slice(0, filename.lastIndexOf('.'));
-}
-class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
-    async getAdapters() {
-        const getSubAdapter = this.getSubAdapter;
-        if (!getSubAdapter) {
-            throw new Error('no getSubAdapter available');
-        }
-        let subConfs = this.getConf('subadapters');
-        if (!(subConfs === null || subConfs === void 0 ? void 0 : subConfs.length)) {
-            const entries = this.getConf('bigWigs');
-            subConfs = entries.map(entry => ({
-                type: 'BigWigAdapter',
-                source: getFilename(entry),
-                bigWigLocation: {
-                    uri: entry,
-                },
-            }));
-        }
-        return Promise.all(subConfs.map(async (conf) => {
-            const dataAdapter = (await getSubAdapter(conf))
-                .dataAdapter;
-            return {
-                source: conf.name || dataAdapter.id,
-                ...conf,
-                dataAdapter,
-            };
-        }));
-    }
-    async getRefNames(opts) {
-        const adapters = await this.getAdapters();
-        const allNames = await Promise.all(adapters.map(a => a.dataAdapter.getRefNames(opts)));
-        return [...new Set(allNames.flat())];
-    }
-    async getGlobalStats(opts) {
-        const adapters = await this.getAdapters();
-        const stats = (await Promise.all(adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
-        const scoreMin = (0, util_1.min)(stats.map(s => s.scoreMin));
-        const scoreMax = (0, util_1.max)(stats.map(s => s.scoreMax));
-        return {
-            scoreMin,
-            scoreMax,
-        };
-    }
-    getFeatures(region, opts = {}) {
-        return (0, rxjs_1.ObservableCreate)(async (observer) => {
-            const adapters = await this.getAdapters();
-            (0, rxjs_2.merge)(...adapters.map(adp => adp.dataAdapter.getFeatures(region, opts).pipe((0, operators_1.map)(p => p.get('source')
-                ? p
-                : new util_1.SimpleFeature({
-                    ...p.toJSON(),
-                    uniqueId: `${adp.source}-${p.id()}`,
-                    source: adp.source,
-                }))))).subscribe(observer);
-        }, opts.stopToken);
-    }
-    async getMultiRegionFeatureDensityStats(_regions) {
-        return {
-            featureDensity: 0,
-        };
-    }
-    async getSources(_regions) {
-        const adapters = await this.getAdapters();
-        return adapters.map(({ dataAdapter, source, name, ...rest }) => ({
-            name: source,
-            __name: name,
-            ...rest,
-        }));
-    }
-}
-MultiWiggleAdapter.capabilities = [
-    'hasResolution',
-    'hasLocalStats',
-    'hasGlobalStats',
-];
-exports.default = MultiWiggleAdapter;

package/dist/MultiWiggleAdapter/configSchema.d.ts

@@ -1,13 +0,0 @@
-declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    subadapters: {
-        type: string;
-        defaultValue: never[];
-        description: string;
-    };
-    bigWigs: {
-        type: string;
-        description: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default MultiWiggleAdapter;

package/dist/MultiWiggleAdapter/configSchema.js

@@ -1,17 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const MultiWiggleAdapter = (0, configuration_1.ConfigurationSchema)('MultiWiggleAdapter', {
-    subadapters: {
-        type: 'frozen',
-        defaultValue: [],
-        description: 'array of subadapter JSON objects',
-    },
-    bigWigs: {
-        type: 'frozen',
-        description: 'array of bigwig filenames, alternative to the subadapters slot',
-        defaultValue: [],
-    },
-}, { explicitlyTyped: true });
-exports.default = MultiWiggleAdapter;

package/dist/MultiWiggleAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;

package/dist/MultiWiggleAdapter/index.js

@@ -1,57 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = MultiWiggleAdapterF;
-const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function MultiWiggleAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new AdapterType_1.default({
-        name: 'MultiWiggleAdapter',
-        displayName: 'Multi-wiggle adapter',
-        configSchema: configSchema_1.default,
-        adapterCapabilities: [
-            'hasResolution',
-            'hasLocalStats',
-            'hasGlobalStats',
-        ],
-        adapterMetadata: {
-            hiddenFromGUI: true,
-        },
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
-    }));
-}

package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '@jbrowse/plugin-data-management';
-declare const MultiWiggleAddTrackWorkflow: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default MultiWiggleAddTrackWorkflow;

package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js

@@ -1,89 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    paper: {
-        margin: theme.spacing(),
-        padding: theme.spacing(),
-    },
-    submit: {
-        marginTop: 25,
-        marginBottom: 100,
-        display: 'block',
-    },
-}));
-function makeFileLocation(file) {
-    return util_1.isElectron
-        ? {
-            localPath: window.require('electron').webUtils.getPathForFile(file),
-            locationType: 'LocalPathLocation',
-        }
-        : (0, tracks_1.storeBlobLocation)({ blob: file });
-}
-function doSubmit({ trackName, val, model, }) {
-    var _a;
-    const session = (0, util_1.getSession)(model);
-    try {
-        const trackId = [
-            `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
-            session.adminMode ? '' : '-sessionTrack',
-        ].join('');
-        let bigWigs;
-        try {
-            bigWigs = JSON.parse(val);
-        }
-        catch (e) {
-            bigWigs = val
-                .split(/\n|\r\n|\r/)
-                .map(f => f.trim())
-                .filter(f => !!f);
-        }
-        const obj = typeof bigWigs[0] === 'string' ? { bigWigs } : { subadapters: bigWigs };
-        if ((0, util_1.isSessionWithAddTracks)(session)) {
-            session.addTrackConf({
-                trackId,
-                type: 'MultiQuantitativeTrack',
-                name: trackName,
-                assemblyNames: [model.assembly],
-                adapter: {
-                    type: 'MultiWiggleAdapter',
-                    ...obj,
-                },
-            });
-            (_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
-        }
-        model.clearData();
-        if ((0, util_1.isSessionModelWithWidgets)(session)) {
-            session.hideWidget(model);
-        }
-    }
-    catch (e) {
-        console.error(e);
-        session.notifyError(`${e}`, e);
-    }
-}
-const MultiWiggleAddTrackWorkflow = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const [val, setVal] = (0, react_1.useState)('');
-    const [trackName, setTrackName] = (0, react_1.useState)(`MultiWiggle${+Date.now()}`);
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "Enter list of URLs for bigwig files in the textbox" }), (0, jsx_runtime_1.jsx)("li", { children: "Or, use the button below the text box to select files from your computer" })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { multiline: true, fullWidth: true, rows: 10, value: val, placeholder: "Paste list of URLs here, or use file selector below", variant: "outlined", onChange: event => {
-                    setVal(event.target.value);
-                } }), (0, jsx_runtime_1.jsxs)(material_1.Button, { variant: "outlined", component: "label", children: ["Choose Files from your computer", (0, jsx_runtime_1.jsx)("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
-                            setVal(JSON.stringify([...(target.files || [])].map(file => ({
-                                type: 'BigWigAdapter',
-                                bigWigLocation: makeFileLocation(file),
-                                source: file.name,
-                            })), null, 2));
-                        } })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: trackName, helperText: "Track name", onChange: event => {
-                    setTrackName(event.target.value);
-                } }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
-                    doSubmit({ trackName, val, model });
-                }, children: "Submit" }), (0, jsx_runtime_1.jsx)("p", { children: "Additional notes: " }), (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["The list of bigwig files in the text box can be a list of URLs, or a list of elements like", ' ', (0, jsx_runtime_1.jsx)("code", { children: `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]` }), ' ', "to apply e.g. the color attribute to the view"] }), (0, jsx_runtime_1.jsx)("li", { children: "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button" })] })] }));
-});
-exports.default = MultiWiggleAddTrackWorkflow;

package/dist/MultiWiggleAddTrackWorkflow/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;

package/dist/MultiWiggleAddTrackWorkflow/index.js

@@ -1,46 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = MultiWiggleAddTrackWorkflowF;
-const react_1 = require("react");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function MultiWiggleAddTrackWorkflowF(pm) {
-    pm.addAddTrackWorkflowType(() => new pluggableElementTypes_1.AddTrackWorkflowType({
-        name: 'Multi-wiggle track',
-        ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddTrackWorkflow')))),
-        stateModel: mobx_state_tree_1.types.model({}),
-    }));
-}