@jbrowse/core 4.3.0 → 5.0.0-beta.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1994 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
- package/esm/BaseFeatureWidget/formatDetails.js +82 -0
- package/esm/BaseFeatureWidget/index.d.ts +4 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
- package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
- package/esm/BaseFeatureWidget/types.d.ts +15 -8
- package/esm/BaseFeatureWidget/util.d.ts +2 -37
- package/esm/BaseFeatureWidget/util.js +4 -85
- package/esm/CorePlugin.js +12 -7
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +55 -44
- package/esm/PluginLoader.js +290 -90
- package/esm/PluginManager.d.ts +476 -57
- package/esm/PluginManager.js +480 -91
- package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/coreModules.generated.d.ts +2 -0
- package/esm/ReExports/coreModules.generated.js +528 -0
- package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/coreWorkerModules.generated.js +488 -0
- package/esm/ReExports/frameworkModules.d.ts +2 -0
- package/esm/ReExports/frameworkModules.js +68 -0
- package/esm/ReExports/frameworkShared.d.ts +12 -0
- package/esm/ReExports/frameworkShared.js +16 -0
- package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +433 -160
- package/esm/ReExports/modules.d.ts +1 -1
- package/esm/ReExports/modules.js +10 -146
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/registry.d.ts +3 -0
- package/esm/ReExports/registry.js +46 -0
- package/esm/ReExports/uiStub.d.ts +3 -0
- package/esm/ReExports/uiStub.js +33 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +11 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +30 -36
- package/esm/TextSearch/TextSearchManager.js +138 -44
- package/esm/TextSearch/places.d.ts +12 -0
- package/esm/TextSearch/places.js +94 -0
- package/esm/assemblyManager/assembly.d.ts +310 -35
- package/esm/assemblyManager/assembly.js +554 -263
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +24 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
- package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
- package/esm/assemblyManager/assemblyManager.d.ts +586 -323
- package/esm/assemblyManager/assemblyManager.js +352 -51
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +44 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
- package/esm/assemblyManager/indexAssemblyNames.js +22 -0
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +75 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
- package/esm/assemblyManager/refNameMapKey.js +12 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +13 -0
- package/esm/checkPlugins.js +98 -0
- package/esm/configuration/bamIndexFields.d.ts +49 -0
- package/esm/configuration/bamIndexFields.js +41 -0
- package/esm/configuration/configurationSchema.d.ts +194 -29
- package/esm/configuration/configurationSchema.js +439 -145
- package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
- package/esm/configuration/configurationSchemaUnion.js +56 -0
- package/esm/configuration/configurationSlot.d.ts +373 -30
- package/esm/configuration/configurationSlot.js +231 -224
- package/esm/configuration/fillLocations.d.ts +14 -0
- package/esm/configuration/fillLocations.js +14 -0
- package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
- package/esm/configuration/formatDetailsConfigSchema.js +87 -0
- package/esm/configuration/fullConfSnapshot.d.ts +13 -0
- package/esm/configuration/fullConfSnapshot.js +44 -0
- package/esm/configuration/getConf.d.ts +92 -0
- package/esm/configuration/getConf.js +141 -0
- package/esm/configuration/index.d.ts +32 -3
- package/esm/configuration/index.js +27 -2
- package/esm/configuration/indexType.d.ts +26 -0
- package/esm/configuration/indexType.js +38 -0
- package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
- package/esm/configuration/mergeFormatCallbacks.js +27 -0
- package/esm/configuration/readConfObject.d.ts +34 -0
- package/esm/configuration/readConfObject.js +118 -0
- package/esm/configuration/requirements.d.ts +37 -0
- package/esm/configuration/requirements.js +88 -0
- package/esm/configuration/schemaRegistry.d.ts +52 -0
- package/esm/configuration/schemaRegistry.js +48 -0
- package/esm/configuration/schemaTypes.d.ts +39 -0
- package/esm/configuration/schemaTypes.js +105 -0
- package/esm/configuration/slotFacade.d.ts +65 -0
- package/esm/configuration/slotFacade.js +110 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/snapshotPreprocess.d.ts +43 -0
- package/esm/configuration/snapshotPreprocess.js +161 -0
- package/esm/configuration/tabixIndexFields.d.ts +70 -0
- package/esm/configuration/tabixIndexFields.js +62 -0
- package/esm/configuration/tabixShorthand.d.ts +51 -0
- package/esm/configuration/tabixShorthand.js +72 -0
- package/esm/configuration/types.d.ts +315 -13
- package/esm/configuration/uriShorthand.d.ts +9 -0
- package/esm/configuration/uriShorthand.js +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
- package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
- package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
- package/esm/data_adapters/dataAdapterCache.js +99 -25
- package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
- package/esm/pluggableElementTypes/DisplayType.js +30 -7
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
- package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
- package/esm/pluggableElementTypes/ViewType.js +40 -5
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
- package/esm/pluggableElementTypes/extendElementType.js +72 -0
- package/esm/pluggableElementTypes/index.d.ts +8 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +26 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +31 -17
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +142 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +215 -90
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +111 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +54 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +50 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +147 -0
- package/esm/pluggableElementTypes/models/index.d.ts +5 -3
- package/esm/pluggableElementTypes/models/index.js +9 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +48 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +114 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +10 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +272 -100
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
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- package/esm/util/useFetchPlugins.d.ts +16 -0
- package/esm/util/useFetchPlugins.js +18 -0
- package/esm/util/useMeasure.d.ts +11 -1
- package/esm/util/useMeasure.js +20 -6
- package/esm/util/usePanZoom.d.ts +75 -0
- package/esm/util/usePanZoom.js +175 -0
- package/esm/util/usePanelVirtualScroll.d.ts +9 -0
- package/esm/util/usePanelVirtualScroll.js +15 -0
- package/esm/util/usePointerDrag.d.ts +37 -0
- package/esm/util/usePointerDrag.js +61 -0
- package/esm/util/useRafCommit.d.ts +4 -0
- package/esm/util/useRafCommit.js +50 -0
- package/esm/util/useResizeDrag.d.ts +91 -0
- package/esm/util/useResizeDrag.js +105 -0
- package/esm/util/useRowVirtualScroll.d.ts +9 -0
- package/esm/util/useRowVirtualScroll.js +22 -0
- package/esm/util/useVirtualScrollWheel.d.ts +23 -0
- package/esm/util/useVirtualScrollWheel.js +74 -0
- package/esm/util/viewHighlights.d.ts +3 -0
- package/esm/util/viewHighlights.js +5 -0
- package/esm/util/viewStatus.d.ts +90 -0
- package/esm/util/viewStatus.js +54 -0
- package/esm/util/virtualRange.d.ts +36 -0
- package/esm/util/virtualRange.js +26 -0
- package/esm/util/webStorage.d.ts +26 -0
- package/esm/util/webStorage.js +92 -0
- package/esm/util/wheelZoom.d.ts +65 -0
- package/esm/util/wheelZoom.js +297 -0
- package/esm/util/whenViewSettled.d.ts +74 -0
- package/esm/util/whenViewSettled.js +77 -0
- package/esm/util/withFeatureDetails.d.ts +34 -0
- package/esm/util/withFeatureDetails.js +59 -0
- package/esm/util/withLaunchInput.d.ts +174 -0
- package/esm/util/withLaunchInput.js +274 -0
- package/package.json +290 -820
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
- package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
- package/esm/ReExports/BaseFeatureDetails.js +0 -9
- package/esm/ReExports/DataGrid.d.ts +0 -1
- package/esm/ReExports/DataGrid.js +0 -1
- package/esm/ReExports/index.d.ts +0 -1
- package/esm/ReExports/index.js +0 -1
- package/esm/configuration/util.d.ts +0 -10
- package/esm/configuration/util.js +0 -123
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
- package/esm/data_adapters/util.d.ts +0 -1
- package/esm/data_adapters/util.js +0 -6
- package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
- package/esm/pluggableElementTypes/GlyphType.js +0 -18
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
- package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
- package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
- package/esm/pluggableElementTypes/renderers/index.js +0 -6
- package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
- package/esm/pluggableElementTypes/renderers/util.js +0 -14
- package/esm/rpc/baseRpcConfig.d.ts +0 -8
- package/esm/rpc/baseRpcConfig.js +0 -10
- package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
- package/esm/rpc/mainThreadRpcConfig.js +0 -8
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
- package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
- package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
- package/esm/rpc/methods/CoreRender.d.ts +0 -14
- package/esm/rpc/methods/CoreRender.js +0 -40
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
- package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
- package/esm/rpc/methods/util.d.ts +0 -15
- package/esm/rpc/methods/util.js +0 -7
- package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
- package/esm/rpc/webWorkerRpcConfig.js +0 -8
- package/esm/ui/MenuButton.d.ts +0 -1
- package/esm/ui/MenuButton.js +0 -1
- package/esm/ui/MenuItems.d.ts +0 -15
- package/esm/ui/MenuItems.js +0 -59
- package/esm/ui/useEvent.d.ts +0 -1
- package/esm/ui/useEvent.js +0 -10
- package/esm/util/blobToDataURL.d.ts +0 -1
- package/esm/util/blobToDataURL.js +0 -14
- package/esm/util/compositeMap.d.ts +0 -11
- package/esm/util/compositeMap.js +0 -59
- package/esm/util/flatqueue/index.d.ts +0 -11
- package/esm/util/flatqueue/index.js +0 -61
- package/esm/util/layouts/BaseLayout.d.ts +0 -30
- package/esm/util/layouts/MultiLayout.d.ts +0 -12
- package/esm/util/layouts/MultiLayout.js +0 -40
- package/esm/util/layouts/PileupLayout.d.ts +0 -41
- package/esm/util/layouts/PileupLayout.js +0 -202
- package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/esm/util/layouts/PrecomputedLayout.js +0 -71
- package/esm/util/layouts/SceneGraph.d.ts +0 -31
- package/esm/util/layouts/SceneGraph.js +0 -121
- package/esm/util/makeAbortableReaction.d.ts +0 -3
- package/esm/util/makeAbortableReaction.js +0 -47
- package/esm/util/map-obj/index.d.ts +0 -13
- package/esm/util/map-obj/index.js +0 -92
- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/stopToken.d.ts +0 -19
- package/esm/util/stopToken.js +0 -90
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
- /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
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import { abgrToCssRgba } from '@jbrowse/render-core/marks/colorFill';
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import type { Feature } from './simpleFeature.ts';
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export { isCssColor, parseCssColorOr } from './cssColorParse.ts';
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export { alpha, blend, darken, formatHEX, formatHEXA, formatRGBA, getAlpha, getBlue, getGreen, getLuminance, getRed, lighten, newColor, parse, toHSLA, toRGBA, } from './color-bits/index.ts';
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export type { Color } from './color-bits/index.ts';
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* one. Deliberately strict: this feeds an *automatic* coloring path, so a value
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* is only claimed when it is unambiguously an in-range BED triple. Anything
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* else — a hex string, a `reserved` column holding something that isn't a color
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* at all — reads as absent and leaves the configured default alone, rather than
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export declare function featureItemRgb(raw: unknown): string | undefined;
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* The BED color a feature declares for itself, under either column name, or
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*/
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export declare function featureBedColor(feature: Feature): string | undefined;
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export declare function parseCssColor(color: string | undefined | null): number;
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export declare function cssColorToNormalizedRgb(color: string): [number, number, number];
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export declare function cssColorToRgb(color: string): [number, number, number];
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export declare function cssColorToRgba(color: string): [number, number, number, number];
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export declare function packAbgr(r: number, g: number, b: number, a: number): number;
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export declare function cssColorToABGR(color: string): number;
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export declare function withAbgrAlpha(c: number, a: number): number;
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export declare function normalizedRgbToABGR(r: number, g: number, b: number): number;
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export declare function normalizedRgbToCss(c: readonly [number, number, number]): string;
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export declare function normalizedRgbToCssRgba(c: readonly [number, number, number], alpha: number): string;
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export declare function setAbgrFill(ctx: {
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fillStyle: string | CanvasGradient | CanvasPattern;
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}, c: number): void;
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export declare function abgrRed(c: number): number;
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export declare function abgrGreen(c: number): number;
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export declare function abgrBlue(c: number): number;
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export declare function abgrAlpha(c: number): number;
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export declare function cssColorToNormalizedRgba(color: string): [number, number, number, number];
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import { abgrToCssRgba } from '@jbrowse/render-core/marks/colorFill';
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import { getAlpha, getBlue, getGreen, getRed, newColor, } from './color-bits/index.js';
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import { bedTriple, parseCssColorOr } from './cssColorParse.js';
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export { abgrToCssRgba };
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export { isCssColor, parseCssColorOr } from './cssColorParse.js';
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export { alpha, blend, darken, formatHEX, formatHEXA, formatRGBA, getAlpha, getBlue, getGreen, getLuminance, getRed, lighten, newColor, parse, toHSLA, toRGBA, } from './color-bits/index.js';
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// Magenta sentinel for invalid input. User-written jexl color callbacks can
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// legitimately return undefined (e.g. when a feature lacks the field they
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// reference); crashing the worker on `undefined.trim()` was the failure mode.
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// Returning magenta makes the bad slot visually obvious without breaking the
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// rest of the render.
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const INVALID_COLOR = newColor(255, 0, 255, 255);
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// UCSC's convention is that a color of "0" means "no color specified", and plain
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// all-zero triple) rather than omitting it — every itemRgb in our own
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// volvox-bed12 fixture is "0,0,0". Honoring those literally would paint an
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const BED_TRIPLE_UNSET = /^0(,0,0)?$/;
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/**
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* One raw attribute value as a usable BED color, or undefined when it isn't
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* one. Deliberately strict: this feeds an *automatic* coloring path, so a value
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* is only claimed when it is unambiguously an in-range BED triple. Anything
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* else — a hex string, a `reserved` column holding something that isn't a color
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* at all — reads as absent and leaves the configured default alone, rather than
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* rendering as the magenta invalid-color sentinel. Takes the raw value so it
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* stays dependency-free and directly testable.
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*/
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export function featureItemRgb(raw) {
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const triple = typeof raw === 'string' ? bedTriple(raw) : undefined;
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return triple !== undefined && !BED_TRIPLE_UNSET.test(triple)
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? triple
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: undefined;
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}
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// The names the BED color column goes by, most specific first.
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//
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// - `itemRgb` — the BED spec's name. What the parser emits for a full BED12.
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// - `reserved` — what UCSC's canonical autoSql calls it ("uint reserved; Used
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// as itemRgb as of 2004-11-22"). bigBed/bigGenePred embed that autoSql and
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// BigBedAdapter takes its field names from it, so bigBed features carry this.
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// - `field8` — the parser only applies the *named* BED schema at exactly 12
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// columns; a BED9/10/11 falls back to positional auto-naming, so the color
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// lands in `field8` (column index 8, which the spec fixes as itemRgb). That
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// makes plain BED9 — the classic "I just want colored features" file — the
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// case this whole thing exists for. Reading the positional name is safe
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// *because* featureItemRgb is strict: a 9th column holding something that
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// isn't an in-range triple is simply not claimed.
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//
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// Nothing is renamed on the feature, deliberately: a config already reading
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// `jexl:get(feature,'field8')` (the workaround this issue's users were told to
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// write) keeps working, and can now just be deleted.
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const BED_COLOR_FIELDS = ['itemRgb', 'reserved', 'field8'];
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/**
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* The BED color a feature declares for itself, under either column name, or
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* undefined if it declares none.
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*/
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export function featureBedColor(feature) {
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let found;
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for (const field of BED_COLOR_FIELDS) {
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found ??= featureItemRgb(feature.get(field));
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}
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return found;
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}
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export function parseCssColor(color) {
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if (typeof color !== 'string' || color.length === 0) {
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return INVALID_COLOR;
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}
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return parseCssColorOr(color, INVALID_COLOR);
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}
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export function cssColorToNormalizedRgb(color) {
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const c = parseCssColor(color);
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return [getRed(c) / 255, getGreen(c) / 255, getBlue(c) / 255];
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}
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export function cssColorToRgb(color) {
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const c = parseCssColor(color);
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return [getRed(c), getGreen(c), getBlue(c)];
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}
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export function cssColorToRgba(color) {
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const c = parseCssColor(color);
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return [getRed(c), getGreen(c), getBlue(c), getAlpha(c)];
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}
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// Pack 0..255 RGBA channel bytes into an ABGR u32 (R at byte 0, A at byte 3).
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// >>> 0 keeps the result an unsigned 32-bit — bit 31 (alpha's top bit) would
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// otherwise make opaque colors negative in JS.
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export function packAbgr(r, g, b, a) {
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return ((a << 24) | (b << 16) | (g << 8) | r) >>> 0;
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}
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// A packer resolves the same few strings once per primitive, so the parse is
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// cached by string. Capped, because BED itemRgb triples are unbounded.
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const ABGR_CACHE_LIMIT = 4096;
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const abgrByCss = new Map();
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export function cssColorToABGR(color) {
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const cached = abgrByCss.get(color);
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if (cached !== undefined) {
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return cached;
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}
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const c = parseCssColor(color);
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const packed = packAbgr(getRed(c), getGreen(c), getBlue(c), getAlpha(c));
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if (abgrByCss.size >= ABGR_CACHE_LIMIT) {
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abgrByCss.clear();
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}
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abgrByCss.set(color, packed);
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return packed;
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}
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// Replace the alpha byte of an ABGR-packed u32, keeping its RGB. RGB already
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// occupies the low 24 bits (b<<16 | g<<8 | r), so this is a mask + or — no
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// per-channel unpack/repack. >>> 0 keeps the result unsigned (see packAbgr).
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export function withAbgrAlpha(c, a) {
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return ((c & 0x00ffffff) | (a << 24)) >>> 0;
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}
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// Pack a 0..1 normalized RGB triple into an ABGR u32 (opaque alpha). Inverse
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// of cssColorToNormalizedRgb at the GPU write boundary — the shader side
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// unpacks with unpackRGBA() (see packages/render-core/src/shaders/colorPack.slang).
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export function normalizedRgbToABGR(r, g, b) {
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return packAbgr(Math.round(r * 255), Math.round(g * 255), Math.round(b * 255), 255);
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}
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// Format a 0..1 normalized RGB triple as a CSS `rgb(r,g,b)` string.
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export function normalizedRgbToCss(c) {
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return `rgb(${Math.round(c[0] * 255)},${Math.round(c[1] * 255)},${Math.round(c[2] * 255)})`;
|
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|
+
}
|
|
121
|
+
// Format a 0..1 normalized RGB triple + alpha as a CSS `rgba(r,g,b,a)` string.
|
|
122
|
+
// Preferred over `ctx.globalAlpha = a; fillStyle = rgb(...)` bracketing.
|
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123
|
+
export function normalizedRgbToCssRgba(c, alpha) {
|
|
124
|
+
return `rgba(${Math.round(c[0] * 255)},${Math.round(c[1] * 255)},${Math.round(c[2] * 255)},${alpha})`;
|
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125
|
+
}
|
|
126
|
+
export function setAbgrFill(ctx, c) {
|
|
127
|
+
ctx.fillStyle = abgrToCssRgba(c);
|
|
128
|
+
}
|
|
129
|
+
// Channel accessors for the ABGR packed layout (R at byte 0, A at byte 3 —
|
|
130
|
+
// the layout produced by cssColorToABGR and consumed by GPU shaders that
|
|
131
|
+
// unpack via bit shifts from a u32 vertex attribute). Mirror of the
|
|
132
|
+
// color-bits getRed/Green/Blue/Alpha, which operate on the canonical
|
|
133
|
+
// 0xRRGGBBAA layout and therefore give wrong results if called on an ABGR
|
|
134
|
+
// value.
|
|
135
|
+
export function abgrRed(c) {
|
|
136
|
+
return c & 0xff;
|
|
137
|
+
}
|
|
138
|
+
export function abgrGreen(c) {
|
|
139
|
+
return (c >>> 8) & 0xff;
|
|
140
|
+
}
|
|
141
|
+
export function abgrBlue(c) {
|
|
142
|
+
return (c >>> 16) & 0xff;
|
|
143
|
+
}
|
|
144
|
+
export function abgrAlpha(c) {
|
|
145
|
+
return (c >>> 24) & 0xff;
|
|
146
|
+
}
|
|
147
|
+
export function cssColorToNormalizedRgba(color) {
|
|
148
|
+
const c = parseCssColor(color);
|
|
149
|
+
return [
|
|
150
|
+
getRed(c) / 255,
|
|
151
|
+
getGreen(c) / 255,
|
|
152
|
+
getBlue(c) / 255,
|
|
153
|
+
getAlpha(c) / 255,
|
|
154
|
+
];
|
|
155
|
+
}
|
|
@@ -0,0 +1,81 @@
|
|
|
1
|
+
import type { RampStop } from '../ui/colorScale.ts';
|
|
2
|
+
import type { ColorSchemeName } from './colorSchemes.ts';
|
|
3
|
+
/** One evenly-spaced ramp stop: 8-bit red, green, blue, alpha. */
|
|
4
|
+
export type ColorRampStop = readonly [number, number, number, number];
|
|
5
|
+
/**
|
|
6
|
+
* #api
|
|
7
|
+
* The 256 viridis stops, fully opaque. Feed them to {@link buildColorRampLut}
|
|
8
|
+
* for the texture/fillStyle form, or to {@link sampleColorRamp} for legend
|
|
9
|
+
* stops.
|
|
10
|
+
*/
|
|
11
|
+
export declare const VIRIDIS_STOPS: readonly ColorRampStop[];
|
|
12
|
+
/**
|
|
13
|
+
* #api
|
|
14
|
+
* Whether a named ramp runs dark at its low end, drawn over white: viridis
|
|
15
|
+
* and its siblings do, juicebox, fall, reds and blues do not.
|
|
16
|
+
*/
|
|
17
|
+
export declare function darkAtLowEnd(scheme: ColorSchemeName): boolean;
|
|
18
|
+
/**
|
|
19
|
+
* #api
|
|
20
|
+
* The domain a continuous colour scale spans: each end `min` or `max` pins,
|
|
21
|
+
* else the extent's, ascending, since a span has no direction and `reverse`
|
|
22
|
+
* is the ramp's. An open end stops at a pinned one rather than crossing it,
|
|
23
|
+
* and an extent holding no value (`[Infinity, -Infinity]`) spans [0, 1].
|
|
24
|
+
*/
|
|
25
|
+
export declare function rampDomain(min: number | undefined, max: number | undefined, extent: readonly [number, number]): [number, number];
|
|
26
|
+
/**
|
|
27
|
+
* #api
|
|
28
|
+
* The stops a continuous colour scale samples: `range`'s CSS colours where it
|
|
29
|
+
* lists any, else the named `scheme`, viridis while that is unset, turned
|
|
30
|
+
* round under `reverse`.
|
|
31
|
+
*/
|
|
32
|
+
export declare function colorRampStops({ range, scheme, reverse, }: RampDeclaration): readonly ColorRampStop[];
|
|
33
|
+
/**
|
|
34
|
+
* #api
|
|
35
|
+
* The color at `t` in `[0, 1]` across a list of EVENLY SPACED stops, linearly
|
|
36
|
+
* interpolated per channel. `t` is clamped, so the ends are the end stops
|
|
37
|
+
* rather than an extrapolation past them, and a one-stop ramp is that stop
|
|
38
|
+
* everywhere.
|
|
39
|
+
*/
|
|
40
|
+
export declare function sampleColorRamp(stops: readonly ColorRampStop[], t: number): ColorRampStop;
|
|
41
|
+
/**
|
|
42
|
+
* #api
|
|
43
|
+
* An RGBA lookup table over {@link sampleColorRamp}, laid out as the Nx1
|
|
44
|
+
* texture both GPU backends upload and the Canvas2D twins index — entry `i` is
|
|
45
|
+
* the color at `t = i / (N - 1)`. N comes off the shader that samples it, so
|
|
46
|
+
* the table and `rampColor`'s texel mapping cannot disagree.
|
|
47
|
+
*
|
|
48
|
+
* The table is always straight. A diverging ramp whose middle belongs at a
|
|
49
|
+
* value off the centre of the domain reads it through `rampMidT`, the shader's
|
|
50
|
+
* rule and its generated twin, so the middle follows a moving domain without a
|
|
51
|
+
* new table.
|
|
52
|
+
*/
|
|
53
|
+
export declare function buildColorRampLut(stops: readonly ColorRampStop[]): Uint8Array<ArrayBuffer>;
|
|
54
|
+
/**
|
|
55
|
+
* #api
|
|
56
|
+
* A continuous colour scale's ramp as a config declares it.
|
|
57
|
+
*/
|
|
58
|
+
export interface RampDeclaration {
|
|
59
|
+
range?: readonly string[];
|
|
60
|
+
scheme?: ColorSchemeName;
|
|
61
|
+
reverse?: boolean;
|
|
62
|
+
}
|
|
63
|
+
/**
|
|
64
|
+
* #api
|
|
65
|
+
* The {@link buildColorRampLut} table a ramp declaration asks for, the same
|
|
66
|
+
* `Uint8Array` for the same declaration, since a GPU backend re-uploads its
|
|
67
|
+
* ramp texture when the identity changes and a render state is rebuilt far
|
|
68
|
+
* more often than its ramp.
|
|
69
|
+
*/
|
|
70
|
+
export declare function rampLutOf(ramp: RampDeclaration): Uint8Array;
|
|
71
|
+
/**
|
|
72
|
+
* #api
|
|
73
|
+
* `n` evenly spaced legend stops read straight out of a
|
|
74
|
+
* {@link buildColorRampLut} byte table — the same 256×1 RGBA array
|
|
75
|
+
* `uploadColorRampLut` hands the GPU and the Canvas2D fillStyle LUTs index —
|
|
76
|
+
* as the stops of a `RampScale`. It holds one claim by construction: the
|
|
77
|
+
* swatch at bar fraction `t` is byte-identical to the ramp entry both backends
|
|
78
|
+
* read at `t`, through the ramp's middle stop at `midNorm` (`rampMidT`). Alpha rides `opacity` (the juicebox fade), never baked into
|
|
79
|
+
* the color string.
|
|
80
|
+
*/
|
|
81
|
+
export declare function stopsFromRampLut(lut: Uint8Array, n: number, midNorm?: number): RampStop[];
|
|
@@ -0,0 +1,244 @@
|
|
|
1
|
+
import { COLOR_RAMP_LUT_ENTRIES } from '@jbrowse/render-core/colorRampLut';
|
|
2
|
+
import { rampMidT } from '@jbrowse/render-core/shaders/colorRampLut';
|
|
3
|
+
import { cssColorToRgba } from './colorBits.js';
|
|
4
|
+
import { DEFAULT_COLOR_SCHEME } from './colorSchemes.js';
|
|
5
|
+
const VIRIDIS_HEX_SPEC = '44015444025645045745055946075a46085c460a5d460b5e470d60470e6147106347116447136548146748166848176948186a481a6c481b6d481c6e481d6f481f70482071482173482374482475482576482677482878482979472a7a472c7a472d7b472e7c472f7d46307e46327e46337f463480453581453781453882443983443a83443b84433d84433e85423f854240864241864142874144874045884046883f47883f48893e49893e4a893e4c8a3d4d8a3d4e8a3c4f8a3c508b3b518b3b528b3a538b3a548c39558c39568c38588c38598c375a8c375b8d365c8d365d8d355e8d355f8d34608d34618d33628d33638d32648e32658e31668e31678e31688e30698e306a8e2f6b8e2f6c8e2e6d8e2e6e8e2e6f8e2d708e2d718e2c718e2c728e2c738e2b748e2b758e2a768e2a778e2a788e29798e297a8e297b8e287c8e287d8e277e8e277f8e27808e26818e26828e26828e25838e25848e25858e24868e24878e23888e23898e238a8d228b8d228c8d228d8d218e8d218f8d21908d21918c20928c20928c20938c1f948c1f958b1f968b1f978b1f988b1f998a1f9a8a1e9b8a1e9c891e9d891f9e891f9f881fa0881fa1881fa1871fa28720a38620a48621a58521a68522a78522a88423a98324aa8325ab8225ac8226ad8127ad8128ae8029af7f2ab07f2cb17e2db27d2eb37c2fb47c31b57b32b67a34b67935b77937b87838b9773aba763bbb753dbc743fbc7340bd7242be7144bf7046c06f48c16e4ac16d4cc26c4ec36b50c46a52c56954c56856c66758c7655ac8645cc8635ec96260ca6063cb5f65cb5e67cc5c69cd5b6ccd5a6ece5870cf5773d05675d05477d1537ad1517cd2507fd34e81d34d84d44b86d54989d5488bd6468ed64590d74393d74195d84098d83e9bd93c9dd93ba0da39a2da37a5db36a8db34aadc32addc30b0dd2fb2dd2db5de2bb8de29bade28bddf26c0df25c2df23c5e021c8e020cae11fcde11dd0e11cd2e21bd5e21ad8e219dae319dde318dfe318e2e418e5e419e7e419eae51aece51befe51cf1e51df4e61ef6e620f8e621fbe723fde725';
|
|
6
|
+
function stopsFromHex(spec) {
|
|
7
|
+
const out = [];
|
|
8
|
+
for (let i = 0; i < spec.length; i += 6) {
|
|
9
|
+
out.push([
|
|
10
|
+
Number.parseInt(spec.slice(i, i + 2), 16),
|
|
11
|
+
Number.parseInt(spec.slice(i + 2, i + 4), 16),
|
|
12
|
+
Number.parseInt(spec.slice(i + 4, i + 6), 16),
|
|
13
|
+
255,
|
|
14
|
+
]);
|
|
15
|
+
}
|
|
16
|
+
return out;
|
|
17
|
+
}
|
|
18
|
+
/**
|
|
19
|
+
* #api
|
|
20
|
+
* The 256 viridis stops, fully opaque. Feed them to {@link buildColorRampLut}
|
|
21
|
+
* for the texture/fillStyle form, or to {@link sampleColorRamp} for legend
|
|
22
|
+
* stops.
|
|
23
|
+
*/
|
|
24
|
+
export const VIRIDIS_STOPS = stopsFromHex(VIRIDIS_HEX_SPEC);
|
|
25
|
+
const MAGMA_HEX_SPEC = '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';
|
|
26
|
+
const INFERNO_HEX_SPEC = '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';
|
|
27
|
+
const CIVIDIS_HEX_SPEC = '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';
|
|
28
|
+
const FALL_STOPS = [
|
|
29
|
+
[255, 255, 255, 255],
|
|
30
|
+
[255, 255, 204, 255],
|
|
31
|
+
[255, 237, 160, 255],
|
|
32
|
+
[254, 217, 118, 255],
|
|
33
|
+
[254, 178, 76, 255],
|
|
34
|
+
[253, 141, 60, 255],
|
|
35
|
+
[252, 78, 42, 255],
|
|
36
|
+
[227, 26, 28, 255],
|
|
37
|
+
[189, 0, 38, 255],
|
|
38
|
+
[128, 0, 38, 255],
|
|
39
|
+
[0, 0, 0, 255],
|
|
40
|
+
];
|
|
41
|
+
const JUICEBOX_STOPS = [
|
|
42
|
+
[255, 0, 0, 0],
|
|
43
|
+
[255, 0, 0, 255],
|
|
44
|
+
];
|
|
45
|
+
const REDS_STOPS = [
|
|
46
|
+
[255, 245, 240, 255],
|
|
47
|
+
[254, 224, 210, 255],
|
|
48
|
+
[252, 187, 161, 255],
|
|
49
|
+
[252, 146, 114, 255],
|
|
50
|
+
[251, 106, 74, 255],
|
|
51
|
+
[239, 59, 44, 255],
|
|
52
|
+
[203, 24, 29, 255],
|
|
53
|
+
[165, 15, 21, 255],
|
|
54
|
+
[103, 0, 13, 255],
|
|
55
|
+
];
|
|
56
|
+
const BLUES_STOPS = [
|
|
57
|
+
[247, 251, 255, 255],
|
|
58
|
+
[222, 235, 247, 255],
|
|
59
|
+
[198, 219, 239, 255],
|
|
60
|
+
[158, 202, 225, 255],
|
|
61
|
+
[107, 174, 214, 255],
|
|
62
|
+
[66, 146, 198, 255],
|
|
63
|
+
[33, 113, 181, 255],
|
|
64
|
+
[8, 81, 156, 255],
|
|
65
|
+
[8, 48, 107, 255],
|
|
66
|
+
];
|
|
67
|
+
const REDBLUE_STOPS = [
|
|
68
|
+
[103, 0, 31, 255],
|
|
69
|
+
[178, 24, 43, 255],
|
|
70
|
+
[214, 96, 77, 255],
|
|
71
|
+
[244, 165, 130, 255],
|
|
72
|
+
[253, 219, 199, 255],
|
|
73
|
+
[247, 247, 247, 255],
|
|
74
|
+
[209, 229, 240, 255],
|
|
75
|
+
[146, 197, 222, 255],
|
|
76
|
+
[67, 147, 195, 255],
|
|
77
|
+
[33, 102, 172, 255],
|
|
78
|
+
[5, 48, 97, 255],
|
|
79
|
+
];
|
|
80
|
+
const PURPLEORANGE_STOPS = [
|
|
81
|
+
[45, 0, 75, 255],
|
|
82
|
+
[84, 39, 136, 255],
|
|
83
|
+
[128, 115, 172, 255],
|
|
84
|
+
[178, 171, 210, 255],
|
|
85
|
+
[216, 218, 235, 255],
|
|
86
|
+
[247, 247, 247, 255],
|
|
87
|
+
[254, 224, 182, 255],
|
|
88
|
+
[253, 184, 99, 255],
|
|
89
|
+
[224, 130, 20, 255],
|
|
90
|
+
[179, 88, 6, 255],
|
|
91
|
+
[127, 59, 8, 255],
|
|
92
|
+
];
|
|
93
|
+
const SCHEME_STOPS = {
|
|
94
|
+
viridis: VIRIDIS_STOPS,
|
|
95
|
+
juicebox: JUICEBOX_STOPS,
|
|
96
|
+
fall: FALL_STOPS,
|
|
97
|
+
reds: REDS_STOPS,
|
|
98
|
+
blues: BLUES_STOPS,
|
|
99
|
+
magma: stopsFromHex(MAGMA_HEX_SPEC),
|
|
100
|
+
inferno: stopsFromHex(INFERNO_HEX_SPEC),
|
|
101
|
+
cividis: stopsFromHex(CIVIDIS_HEX_SPEC),
|
|
102
|
+
redblue: REDBLUE_STOPS,
|
|
103
|
+
purpleorange: PURPLEORANGE_STOPS,
|
|
104
|
+
};
|
|
105
|
+
function luminanceOverWhite([r, g, b, a]) {
|
|
106
|
+
const over = (c) => 255 + (c - 255) * (a / 255);
|
|
107
|
+
return 0.2126 * over(r) + 0.7152 * over(g) + 0.0722 * over(b);
|
|
108
|
+
}
|
|
109
|
+
/**
|
|
110
|
+
* #api
|
|
111
|
+
* Whether a named ramp runs dark at its low end, drawn over white: viridis
|
|
112
|
+
* and its siblings do, juicebox, fall, reds and blues do not.
|
|
113
|
+
*/
|
|
114
|
+
export function darkAtLowEnd(scheme) {
|
|
115
|
+
const stops = SCHEME_STOPS[scheme];
|
|
116
|
+
return luminanceOverWhite(stops[0]) < luminanceOverWhite(stops.at(-1));
|
|
117
|
+
}
|
|
118
|
+
const EMPTY_EXTENT_DOMAIN = [0, 1];
|
|
119
|
+
/**
|
|
120
|
+
* #api
|
|
121
|
+
* The domain a continuous colour scale spans: each end `min` or `max` pins,
|
|
122
|
+
* else the extent's, ascending, since a span has no direction and `reverse`
|
|
123
|
+
* is the ramp's. An open end stops at a pinned one rather than crossing it,
|
|
124
|
+
* and an extent holding no value (`[Infinity, -Infinity]`) spans [0, 1].
|
|
125
|
+
*/
|
|
126
|
+
export function rampDomain(min, max, extent) {
|
|
127
|
+
const [lo, hi] = extent[0] <= extent[1] ? extent : EMPTY_EXTENT_DOMAIN;
|
|
128
|
+
if (min !== undefined && max !== undefined) {
|
|
129
|
+
return min <= max ? [min, max] : [max, min];
|
|
130
|
+
}
|
|
131
|
+
if (min !== undefined) {
|
|
132
|
+
return [min, Math.max(min, hi)];
|
|
133
|
+
}
|
|
134
|
+
if (max !== undefined) {
|
|
135
|
+
return [Math.min(lo, max), max];
|
|
136
|
+
}
|
|
137
|
+
return [lo, hi];
|
|
138
|
+
}
|
|
139
|
+
/**
|
|
140
|
+
* #api
|
|
141
|
+
* The stops a continuous colour scale samples: `range`'s CSS colours where it
|
|
142
|
+
* lists any, else the named `scheme`, viridis while that is unset, turned
|
|
143
|
+
* round under `reverse`.
|
|
144
|
+
*/
|
|
145
|
+
export function colorRampStops({ range, scheme, reverse, }) {
|
|
146
|
+
const stops = range?.length
|
|
147
|
+
? range.map(c => cssColorToRgba(c))
|
|
148
|
+
: SCHEME_STOPS[scheme ?? DEFAULT_COLOR_SCHEME];
|
|
149
|
+
return reverse ? stops.toReversed() : stops;
|
|
150
|
+
}
|
|
151
|
+
function lerp8(a, b, t) {
|
|
152
|
+
return Math.round(a * (1 - t) + b * t);
|
|
153
|
+
}
|
|
154
|
+
/**
|
|
155
|
+
* #api
|
|
156
|
+
* The color at `t` in `[0, 1]` across a list of EVENLY SPACED stops, linearly
|
|
157
|
+
* interpolated per channel. `t` is clamped, so the ends are the end stops
|
|
158
|
+
* rather than an extrapolation past them, and a one-stop ramp is that stop
|
|
159
|
+
* everywhere.
|
|
160
|
+
*/
|
|
161
|
+
export function sampleColorRamp(stops, t) {
|
|
162
|
+
const position = Math.max(0, Math.min(1, t)) * (stops.length - 1);
|
|
163
|
+
const lower = Math.floor(position);
|
|
164
|
+
const lo = stops[lower];
|
|
165
|
+
const hi = stops[Math.min(lower + 1, stops.length - 1)];
|
|
166
|
+
const frac = position - lower;
|
|
167
|
+
return [
|
|
168
|
+
lerp8(lo[0], hi[0], frac),
|
|
169
|
+
lerp8(lo[1], hi[1], frac),
|
|
170
|
+
lerp8(lo[2], hi[2], frac),
|
|
171
|
+
lerp8(lo[3], hi[3], frac),
|
|
172
|
+
];
|
|
173
|
+
}
|
|
174
|
+
/**
|
|
175
|
+
* #api
|
|
176
|
+
* An RGBA lookup table over {@link sampleColorRamp}, laid out as the Nx1
|
|
177
|
+
* texture both GPU backends upload and the Canvas2D twins index — entry `i` is
|
|
178
|
+
* the color at `t = i / (N - 1)`. N comes off the shader that samples it, so
|
|
179
|
+
* the table and `rampColor`'s texel mapping cannot disagree.
|
|
180
|
+
*
|
|
181
|
+
* The table is always straight. A diverging ramp whose middle belongs at a
|
|
182
|
+
* value off the centre of the domain reads it through `rampMidT`, the shader's
|
|
183
|
+
* rule and its generated twin, so the middle follows a moving domain without a
|
|
184
|
+
* new table.
|
|
185
|
+
*/
|
|
186
|
+
export function buildColorRampLut(stops) {
|
|
187
|
+
const last = COLOR_RAMP_LUT_ENTRIES - 1;
|
|
188
|
+
const data = new Uint8Array(COLOR_RAMP_LUT_ENTRIES * 4);
|
|
189
|
+
for (let i = 0; i < COLOR_RAMP_LUT_ENTRIES; i++) {
|
|
190
|
+
const [r, g, b, a] = sampleColorRamp(stops, i / last);
|
|
191
|
+
data[i * 4] = r;
|
|
192
|
+
data[i * 4 + 1] = g;
|
|
193
|
+
data[i * 4 + 2] = b;
|
|
194
|
+
data[i * 4 + 3] = a;
|
|
195
|
+
}
|
|
196
|
+
return data;
|
|
197
|
+
}
|
|
198
|
+
const MAX_RAMP_LUTS = 32;
|
|
199
|
+
const luts = new Map();
|
|
200
|
+
/**
|
|
201
|
+
* #api
|
|
202
|
+
* The {@link buildColorRampLut} table a ramp declaration asks for, the same
|
|
203
|
+
* `Uint8Array` for the same declaration, since a GPU backend re-uploads its
|
|
204
|
+
* ramp texture when the identity changes and a render state is rebuilt far
|
|
205
|
+
* more often than its ramp.
|
|
206
|
+
*/
|
|
207
|
+
export function rampLutOf(ramp) {
|
|
208
|
+
const key = [ramp.scheme ?? '', ramp.range?.join(' ') ?? '', !!ramp.reverse]
|
|
209
|
+
.map(String)
|
|
210
|
+
.join('|');
|
|
211
|
+
let lut = luts.get(key);
|
|
212
|
+
if (!lut) {
|
|
213
|
+
if (luts.size >= MAX_RAMP_LUTS) {
|
|
214
|
+
luts.delete(luts.keys().next().value);
|
|
215
|
+
}
|
|
216
|
+
lut = buildColorRampLut(colorRampStops(ramp));
|
|
217
|
+
luts.set(key, lut);
|
|
218
|
+
}
|
|
219
|
+
return lut;
|
|
220
|
+
}
|
|
221
|
+
/**
|
|
222
|
+
* #api
|
|
223
|
+
* `n` evenly spaced legend stops read straight out of a
|
|
224
|
+
* {@link buildColorRampLut} byte table — the same 256×1 RGBA array
|
|
225
|
+
* `uploadColorRampLut` hands the GPU and the Canvas2D fillStyle LUTs index —
|
|
226
|
+
* as the stops of a `RampScale`. It holds one claim by construction: the
|
|
227
|
+
* swatch at bar fraction `t` is byte-identical to the ramp entry both backends
|
|
228
|
+
* read at `t`, through the ramp's middle stop at `midNorm` (`rampMidT`). Alpha rides `opacity` (the juicebox fade), never baked into
|
|
229
|
+
* the color string.
|
|
230
|
+
*/
|
|
231
|
+
export function stopsFromRampLut(lut, n, midNorm = 0.5) {
|
|
232
|
+
const lastEntry = lut.length / 4 - 1;
|
|
233
|
+
const out = [];
|
|
234
|
+
for (let i = 0; i < n; i++) {
|
|
235
|
+
const t = n === 1 ? 0 : i / (n - 1);
|
|
236
|
+
const o = Math.round(rampMidT(t, midNorm) * lastEntry) * 4;
|
|
237
|
+
out.push({
|
|
238
|
+
offset: t,
|
|
239
|
+
color: `rgb(${lut[o]},${lut[o + 1]},${lut[o + 2]})`,
|
|
240
|
+
opacity: lut[o + 3] / 255,
|
|
241
|
+
});
|
|
242
|
+
}
|
|
243
|
+
return out;
|
|
244
|
+
}
|