@jbrowse/core 4.3.0 → 5.0.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1265) hide show
  1. package/README.md +1994 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
  37. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
  38. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  39. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
  40. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
  41. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  97. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  98. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  99. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  100. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  101. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  102. package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
  103. package/esm/BaseFeatureWidget/formatDetails.js +82 -0
  104. package/esm/BaseFeatureWidget/index.d.ts +4 -1
  105. package/esm/BaseFeatureWidget/index.js +2 -2
  106. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
  107. package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
  108. package/esm/BaseFeatureWidget/types.d.ts +15 -8
  109. package/esm/BaseFeatureWidget/util.d.ts +2 -37
  110. package/esm/BaseFeatureWidget/util.js +4 -85
  111. package/esm/CorePlugin.js +12 -7
  112. package/esm/PhasedScheduler.d.ts +4 -2
  113. package/esm/PhasedScheduler.js +18 -2
  114. package/esm/Plugin.d.ts +6 -1
  115. package/esm/Plugin.js +7 -0
  116. package/esm/PluginLoader.d.ts +55 -44
  117. package/esm/PluginLoader.js +290 -90
  118. package/esm/PluginManager.d.ts +476 -57
  119. package/esm/PluginManager.js +480 -91
  120. package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
  121. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  122. package/esm/ReExports/MuiReExports.d.ts +3 -134
  123. package/esm/ReExports/MuiReExports.js +43 -16
  124. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  125. package/esm/ReExports/MuiStylesReExports.js +55 -0
  126. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  127. package/esm/ReExports/coreModules.generated.js +528 -0
  128. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  129. package/esm/ReExports/coreWorkerModules.generated.js +488 -0
  130. package/esm/ReExports/frameworkModules.d.ts +2 -0
  131. package/esm/ReExports/frameworkModules.js +68 -0
  132. package/esm/ReExports/frameworkShared.d.ts +12 -0
  133. package/esm/ReExports/frameworkShared.js +16 -0
  134. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  135. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  136. package/esm/ReExports/lazify.d.ts +2 -2
  137. package/esm/ReExports/lazify.js +16 -3
  138. package/esm/ReExports/list.js +433 -160
  139. package/esm/ReExports/modules.d.ts +1 -1
  140. package/esm/ReExports/modules.js +10 -146
  141. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  142. package/esm/ReExports/muiComponentNames.js +130 -0
  143. package/esm/ReExports/registry.d.ts +3 -0
  144. package/esm/ReExports/registry.js +46 -0
  145. package/esm/ReExports/uiStub.d.ts +3 -0
  146. package/esm/ReExports/uiStub.js +33 -0
  147. package/esm/ReExports/workerModules.d.ts +2 -0
  148. package/esm/ReExports/workerModules.js +11 -0
  149. package/esm/TextSearch/BaseResults.d.ts +20 -21
  150. package/esm/TextSearch/BaseResults.js +8 -33
  151. package/esm/TextSearch/TextSearchManager.d.ts +30 -36
  152. package/esm/TextSearch/TextSearchManager.js +138 -44
  153. package/esm/TextSearch/places.d.ts +12 -0
  154. package/esm/TextSearch/places.js +94 -0
  155. package/esm/assemblyManager/assembly.d.ts +310 -35
  156. package/esm/assemblyManager/assembly.js +554 -263
  157. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  158. package/esm/assemblyManager/assemblyAdapters.js +24 -0
  159. package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
  160. package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
  161. package/esm/assemblyManager/assemblyManager.d.ts +586 -323
  162. package/esm/assemblyManager/assemblyManager.js +352 -51
  163. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
  164. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
  165. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  166. package/esm/assemblyManager/geneticCodes.js +44 -0
  167. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
  168. package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
  169. package/esm/assemblyManager/index.d.ts +1 -1
  170. package/esm/assemblyManager/index.js +2 -2
  171. package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
  172. package/esm/assemblyManager/indexAssemblyNames.js +22 -0
  173. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  174. package/esm/assemblyManager/loadRefNameMap.js +75 -0
  175. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  176. package/esm/assemblyManager/refNameColors.js +32 -0
  177. package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
  178. package/esm/assemblyManager/refNameMapKey.js +12 -0
  179. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  180. package/esm/assemblyManager/refNameMaps.js +87 -0
  181. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  182. package/esm/assemblyManager/refNameMismatch.js +66 -0
  183. package/esm/checkPlugins.d.ts +13 -0
  184. package/esm/checkPlugins.js +98 -0
  185. package/esm/configuration/bamIndexFields.d.ts +49 -0
  186. package/esm/configuration/bamIndexFields.js +41 -0
  187. package/esm/configuration/configurationSchema.d.ts +194 -29
  188. package/esm/configuration/configurationSchema.js +439 -145
  189. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  190. package/esm/configuration/configurationSchemaUnion.js +56 -0
  191. package/esm/configuration/configurationSlot.d.ts +373 -30
  192. package/esm/configuration/configurationSlot.js +231 -224
  193. package/esm/configuration/fillLocations.d.ts +14 -0
  194. package/esm/configuration/fillLocations.js +14 -0
  195. package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
  196. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  197. package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
  198. package/esm/configuration/formatDetailsConfigSchema.js +87 -0
  199. package/esm/configuration/fullConfSnapshot.d.ts +13 -0
  200. package/esm/configuration/fullConfSnapshot.js +44 -0
  201. package/esm/configuration/getConf.d.ts +92 -0
  202. package/esm/configuration/getConf.js +141 -0
  203. package/esm/configuration/index.d.ts +32 -3
  204. package/esm/configuration/index.js +27 -2
  205. package/esm/configuration/indexType.d.ts +26 -0
  206. package/esm/configuration/indexType.js +38 -0
  207. package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
  208. package/esm/configuration/mergeFormatCallbacks.js +27 -0
  209. package/esm/configuration/readConfObject.d.ts +34 -0
  210. package/esm/configuration/readConfObject.js +118 -0
  211. package/esm/configuration/requirements.d.ts +37 -0
  212. package/esm/configuration/requirements.js +88 -0
  213. package/esm/configuration/schemaRegistry.d.ts +52 -0
  214. package/esm/configuration/schemaRegistry.js +48 -0
  215. package/esm/configuration/schemaTypes.d.ts +39 -0
  216. package/esm/configuration/schemaTypes.js +105 -0
  217. package/esm/configuration/slotFacade.d.ts +65 -0
  218. package/esm/configuration/slotFacade.js +110 -0
  219. package/esm/configuration/slotValueUtils.d.ts +17 -0
  220. package/esm/configuration/slotValueUtils.js +25 -0
  221. package/esm/configuration/snapshotPreprocess.d.ts +43 -0
  222. package/esm/configuration/snapshotPreprocess.js +161 -0
  223. package/esm/configuration/tabixIndexFields.d.ts +70 -0
  224. package/esm/configuration/tabixIndexFields.js +62 -0
  225. package/esm/configuration/tabixShorthand.d.ts +51 -0
  226. package/esm/configuration/tabixShorthand.js +72 -0
  227. package/esm/configuration/types.d.ts +315 -13
  228. package/esm/configuration/uriShorthand.d.ts +9 -0
  229. package/esm/configuration/uriShorthand.js +16 -0
  230. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
  231. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
  232. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
  233. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
  234. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  235. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  236. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  237. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  238. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  239. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  240. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
  241. package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
  242. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  243. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  244. package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
  245. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  246. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
  247. package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
  248. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  249. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  250. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
  251. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  252. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  253. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  254. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  255. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  256. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
  257. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
  258. package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
  259. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  260. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  261. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  262. package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
  263. package/esm/data_adapters/dataAdapterCache.js +99 -25
  264. package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
  265. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  266. package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
  267. package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
  268. package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
  269. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  270. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  271. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  272. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  273. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  274. package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
  275. package/esm/pluggableElementTypes/DisplayType.js +30 -7
  276. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  277. package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
  278. package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
  279. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
  280. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  281. package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
  282. package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
  283. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
  284. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  285. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  286. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  287. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  288. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  289. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  290. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  291. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  292. package/esm/pluggableElementTypes/TrackType.js +1 -1
  293. package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
  294. package/esm/pluggableElementTypes/ViewType.js +40 -5
  295. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  296. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  297. package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
  298. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  299. package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
  300. package/esm/pluggableElementTypes/extendElementType.js +72 -0
  301. package/esm/pluggableElementTypes/index.d.ts +8 -7
  302. package/esm/pluggableElementTypes/index.js +24 -14
  303. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
  304. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  305. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
  306. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
  307. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
  308. package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
  309. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
  310. package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
  311. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
  312. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  313. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
  314. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
  315. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +26 -8
  316. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  317. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +31 -17
  318. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  319. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +142 -65
  320. package/esm/pluggableElementTypes/models/baseTrackConfig.js +215 -90
  321. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  322. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +111 -139
  323. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +54 -0
  324. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  325. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +50 -0
  326. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +147 -0
  327. package/esm/pluggableElementTypes/models/index.d.ts +5 -3
  328. package/esm/pluggableElementTypes/models/index.js +9 -8
  329. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +48 -0
  330. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +114 -0
  331. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  332. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +10 -3
  333. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +272 -100
  334. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
  335. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
  336. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
  337. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
  338. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
  339. package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
  340. package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
  341. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
  342. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
  343. package/esm/pluginDefinitions.d.ts +225 -0
  344. package/esm/pluginDefinitions.js +254 -0
  345. package/esm/rpc/BaseRpcDriver.d.ts +27 -35
  346. package/esm/rpc/BaseRpcDriver.js +68 -106
  347. package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
  348. package/esm/rpc/MainThreadRpcDriver.js +23 -29
  349. package/esm/rpc/RpcClient.d.ts +50 -0
  350. package/esm/rpc/RpcClient.js +189 -0
  351. package/esm/rpc/RpcManager.d.ts +120 -27
  352. package/esm/rpc/RpcManager.js +187 -50
  353. package/esm/rpc/RpcRegistry.d.ts +298 -0
  354. package/esm/rpc/RpcServer.d.ts +43 -0
  355. package/esm/rpc/RpcServer.js +242 -0
  356. package/esm/rpc/WebWorkerRpcDriver.d.ts +78 -24
  357. package/esm/rpc/WebWorkerRpcDriver.js +311 -30
  358. package/esm/rpc/byteBudget.d.ts +64 -0
  359. package/esm/rpc/byteBudget.js +61 -0
  360. package/esm/rpc/configSchema.d.ts +13 -5
  361. package/esm/rpc/configSchema.js +40 -16
  362. package/esm/rpc/coreRpcMethods.d.ts +6 -5
  363. package/esm/rpc/coreRpcMethods.js +13 -12
  364. package/esm/rpc/explainTransferError.d.ts +35 -0
  365. package/esm/rpc/explainTransferError.js +158 -0
  366. package/esm/rpc/methods/CoreFreeResources.d.ts +19 -4
  367. package/esm/rpc/methods/CoreFreeResources.js +17 -6
  368. package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
  369. package/esm/rpc/methods/CoreGetEncodedFeature.js +32 -0
  370. package/esm/rpc/methods/CoreGetEncodedLayers.d.ts +16 -0
  371. package/esm/rpc/methods/CoreGetEncodedLayers.js +59 -0
  372. package/esm/rpc/methods/CoreGetExportData.d.ts +5 -18
  373. package/esm/rpc/methods/CoreGetExportData.js +25 -15
  374. package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +11 -0
  375. package/esm/rpc/methods/CoreGetFeatureDensity.js +22 -0
  376. package/esm/rpc/methods/CoreGetFeatures.d.ts +6 -15
  377. package/esm/rpc/methods/CoreGetFeatures.js +14 -18
  378. package/esm/rpc/methods/CoreGetInfo.d.ts +6 -0
  379. package/esm/rpc/methods/CoreGetInfo.js +12 -0
  380. package/esm/rpc/methods/CoreGetMetadata.d.ts +4 -7
  381. package/esm/rpc/methods/CoreGetMetadata.js +6 -9
  382. package/esm/rpc/methods/CoreGetRefNames.d.ts +4 -8
  383. package/esm/rpc/methods/CoreGetRefNames.js +16 -15
  384. package/esm/rpc/methods/CoreGetRegionByteEstimate.d.ts +6 -0
  385. package/esm/rpc/methods/CoreGetRegionByteEstimate.js +19 -0
  386. package/esm/rpc/methods/CoreGetRegions.d.ts +4 -6
  387. package/esm/rpc/methods/CoreGetRegions.js +6 -9
  388. package/esm/rpc/methods/CoreGetSequence.d.ts +4 -11
  389. package/esm/rpc/methods/CoreGetSequence.js +12 -13
  390. package/esm/rpc/methods/CoreLoadAdapterCode.d.ts +13 -0
  391. package/esm/rpc/methods/CoreLoadAdapterCode.js +16 -0
  392. package/esm/rpc/methods/layerFeatures.d.ts +33 -0
  393. package/esm/rpc/methods/layerFeatures.js +29 -0
  394. package/esm/rpc/serializeError/index.d.ts +9 -0
  395. package/esm/rpc/serializeError/index.js +86 -0
  396. package/esm/svg/SvgExport.d.ts +30 -0
  397. package/esm/svg/SvgExport.js +52 -0
  398. package/esm/svg/SvgThemeProviders.d.ts +12 -0
  399. package/esm/svg/SvgThemeProviders.js +15 -0
  400. package/esm/svg/constants.d.ts +1 -0
  401. package/esm/svg/constants.js +5 -0
  402. package/esm/svg/exportViewSvg.d.ts +28 -0
  403. package/esm/svg/exportViewSvg.js +13 -0
  404. package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
  405. package/esm/svg/normalizeSvgMarkup.js +99 -0
  406. package/esm/svg/saveSvgAsImage.d.ts +6 -0
  407. package/esm/svg/saveSvgAsImage.js +90 -0
  408. package/esm/svg/serializeSvg.d.ts +7 -0
  409. package/esm/svg/serializeSvg.js +11 -0
  410. package/esm/svg/svgId.d.ts +42 -0
  411. package/esm/svg/svgId.js +84 -0
  412. package/esm/svg/svgReady.d.ts +138 -0
  413. package/esm/svg/svgReady.js +165 -0
  414. package/esm/svg/trackNames.d.ts +29 -0
  415. package/esm/svg/trackNames.js +34 -0
  416. package/esm/svg/wrapSvgExport.d.ts +12 -0
  417. package/esm/svg/wrapSvgExport.js +10 -0
  418. package/esm/ui/ActionLink.d.ts +7 -0
  419. package/esm/ui/ActionLink.js +9 -0
  420. package/esm/ui/AddCustomPluginDialog.d.ts +14 -0
  421. package/esm/ui/AddCustomPluginDialog.js +56 -0
  422. package/esm/ui/AddGenomePane.d.ts +8 -0
  423. package/esm/ui/AddGenomePane.js +228 -0
  424. package/esm/ui/AdvancedOptions.d.ts +6 -0
  425. package/esm/ui/AdvancedOptions.js +17 -0
  426. package/esm/ui/AppLogo.d.ts +1 -1
  427. package/esm/ui/AppLogo.js +2 -2
  428. package/esm/ui/AppReadyMarker.d.ts +45 -0
  429. package/esm/ui/AppReadyMarker.js +89 -0
  430. package/esm/ui/AssemblySelector.d.ts +5 -8
  431. package/esm/ui/AssemblySelector.js +8 -26
  432. package/esm/ui/BaseExportSvgDialog.d.ts +16 -0
  433. package/esm/ui/BaseExportSvgDialog.js +84 -0
  434. package/esm/ui/BaseTooltip.d.ts +14 -3
  435. package/esm/ui/BaseTooltip.js +151 -34
  436. package/esm/ui/CascadingMenu.d.ts +9 -18
  437. package/esm/ui/CascadingMenu.js +446 -42
  438. package/esm/ui/CascadingMenuButton.d.ts +9 -11
  439. package/esm/ui/CascadingMenuButton.js +36 -18
  440. package/esm/ui/CascadingMenuHelpDialog.d.ts +2 -2
  441. package/esm/ui/CascadingMenuHelpDialog.js +4 -5
  442. package/esm/ui/CascadingMenuHelpIconButton.d.ts +2 -1
  443. package/esm/ui/CascadingMenuHelpIconButton.js +18 -9
  444. package/esm/ui/ColorPicker.d.ts +6 -9
  445. package/esm/ui/ColorPicker.js +36 -39
  446. package/esm/ui/ConfirmDialog.d.ts +2 -9
  447. package/esm/ui/ConfirmDialog.js +6 -9
  448. package/esm/ui/ContextMenu.d.ts +50 -0
  449. package/esm/ui/ContextMenu.js +55 -0
  450. package/esm/ui/CopyToClipboardButton.d.ts +10 -0
  451. package/esm/ui/CopyToClipboardButton.js +14 -0
  452. package/esm/ui/Crosshairs.d.ts +10 -0
  453. package/esm/ui/Crosshairs.js +15 -0
  454. package/esm/ui/DOMPurifySanitizedHTML.d.ts +1 -1
  455. package/esm/ui/DOMPurifySanitizedHTML.js +5 -5
  456. package/esm/ui/DataGridFlexContainer.d.ts +9 -2
  457. package/esm/ui/DataGridFlexContainer.js +4 -3
  458. package/esm/ui/Dialog.d.ts +5 -2
  459. package/esm/ui/Dialog.js +35 -27
  460. package/esm/ui/DraggableDialog.d.ts +3 -3
  461. package/esm/ui/DraggableDialog.js +50 -12
  462. package/esm/ui/DropDownMenu.d.ts +4 -2
  463. package/esm/ui/DropDownMenu.js +6 -5
  464. package/esm/ui/EditableTypography.d.ts +3 -1
  465. package/esm/ui/EditableTypography.js +34 -26
  466. package/esm/ui/ErrorActions.d.ts +24 -0
  467. package/esm/ui/ErrorActions.js +20 -0
  468. package/esm/ui/ErrorBanner.d.ts +7 -0
  469. package/esm/ui/ErrorBanner.js +35 -0
  470. package/esm/ui/ErrorBar.d.ts +6 -0
  471. package/esm/ui/ErrorBar.js +35 -0
  472. package/esm/ui/ErrorBoundary.d.ts +29 -5
  473. package/esm/ui/ErrorBoundary.js +32 -2
  474. package/esm/ui/ErrorMessage.d.ts +2 -4
  475. package/esm/ui/ErrorMessage.js +17 -52
  476. package/esm/ui/ErrorMessageStackTraceContents.d.ts +1 -1
  477. package/esm/ui/ErrorMessageStackTraceContents.js +5 -4
  478. package/esm/ui/ErrorMessageStackTraceDialog.d.ts +1 -1
  479. package/esm/ui/ErrorMessageStackTraceDialog.js +51 -96
  480. package/esm/ui/ErrorOverlay.d.ts +8 -0
  481. package/esm/ui/ErrorOverlay.js +5 -0
  482. package/esm/ui/ExportSvgDialog.d.ts +7 -0
  483. package/esm/ui/ExportSvgDialog.js +9 -0
  484. package/esm/ui/ExternalLink.d.ts +1 -1
  485. package/esm/ui/FactoryResetDialog.d.ts +1 -1
  486. package/esm/ui/FactoryResetDialog.js +6 -15
  487. package/esm/ui/FatalErrorDialog.d.ts +3 -2
  488. package/esm/ui/FatalErrorDialog.js +6 -5
  489. package/esm/ui/FileDropZone.d.ts +25 -0
  490. package/esm/ui/FileDropZone.js +129 -0
  491. package/esm/ui/FileSelector/FileSelector.d.ts +1 -1
  492. package/esm/ui/FileSelector/FileSelector.js +59 -30
  493. package/esm/ui/FileSelector/LocalFileChooser.d.ts +7 -2
  494. package/esm/ui/FileSelector/LocalFileChooser.js +61 -47
  495. package/esm/ui/FileSelector/LocationInput.d.ts +1 -1
  496. package/esm/ui/FileSelector/LocationInput.js +8 -12
  497. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +5 -5
  498. package/esm/ui/FileSelector/SourceTypeSelector.js +9 -7
  499. package/esm/ui/FileSelector/UrlChooser.d.ts +1 -1
  500. package/esm/ui/FileSelector/UrlChooser.js +26 -2
  501. package/esm/ui/FileSelector/emptySourceType.d.ts +2 -0
  502. package/esm/ui/FileSelector/emptySourceType.js +14 -0
  503. package/esm/ui/FileSelector/useInternetAccounts.d.ts +436 -64
  504. package/esm/ui/FileSelector/useInternetAccounts.js +13 -6
  505. package/esm/ui/FileSelector/util.d.ts +58 -3
  506. package/esm/ui/FileSelector/util.js +128 -11
  507. package/esm/ui/GpuFallbackButton.d.ts +12 -0
  508. package/esm/ui/GpuFallbackButton.js +20 -0
  509. package/esm/ui/HoverMenu.d.ts +11 -3
  510. package/esm/ui/HoverMenu.js +34 -9
  511. package/esm/ui/HoverTooltip.d.ts +27 -0
  512. package/esm/ui/HoverTooltip.js +24 -0
  513. package/esm/ui/Icons.d.ts +6 -4
  514. package/esm/ui/Icons.js +9 -0
  515. package/esm/ui/InfoDialog.d.ts +7 -0
  516. package/esm/ui/InfoDialog.js +16 -0
  517. package/esm/ui/InlineMenuControls.d.ts +6 -0
  518. package/esm/ui/InlineMenuControls.js +17 -0
  519. package/esm/ui/JexlFilterDialog.d.ts +26 -0
  520. package/esm/ui/JexlFilterDialog.js +167 -0
  521. package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
  522. package/esm/ui/JexlFilterRowEditors.js +90 -0
  523. package/esm/ui/LabeledCheckbox.d.ts +9 -0
  524. package/esm/ui/LabeledCheckbox.js +7 -0
  525. package/esm/ui/LazyBaseTooltip.d.ts +4 -0
  526. package/esm/ui/LazyBaseTooltip.js +9 -0
  527. package/esm/ui/LegendSwatchGlyph.d.ts +7 -0
  528. package/esm/ui/LegendSwatchGlyph.js +30 -0
  529. package/esm/ui/LoadingDots.d.ts +1 -0
  530. package/esm/ui/LoadingDots.js +30 -0
  531. package/esm/ui/LoadingEllipses.d.ts +17 -1
  532. package/esm/ui/LoadingEllipses.js +20 -29
  533. package/esm/ui/LoadingOverlay.d.ts +23 -0
  534. package/esm/ui/LoadingOverlay.js +139 -0
  535. package/esm/ui/LoadingProgress.d.ts +16 -0
  536. package/esm/ui/LoadingProgress.js +16 -0
  537. package/esm/ui/Logo.d.ts +2 -2
  538. package/esm/ui/Logo.js +23 -24
  539. package/esm/ui/Menu.js +1 -1
  540. package/esm/ui/MenuItemChevron.d.ts +3 -0
  541. package/esm/ui/MenuItemChevron.js +19 -0
  542. package/esm/ui/MenuItemEndDecoration.d.ts +4 -0
  543. package/esm/ui/MenuItemEndDecoration.js +28 -0
  544. package/esm/ui/MenuItemTrailing.d.ts +12 -0
  545. package/esm/ui/MenuItemTrailing.js +42 -0
  546. package/esm/ui/MenuTypes.d.ts +95 -5
  547. package/esm/ui/MenuTypes.js +16 -1
  548. package/esm/ui/MonospaceTextField.d.ts +10 -0
  549. package/esm/ui/MonospaceTextField.js +40 -0
  550. package/esm/ui/NumberTextField.d.ts +31 -0
  551. package/esm/ui/NumberTextField.js +33 -0
  552. package/esm/ui/PaletteContext.d.ts +90 -0
  553. package/esm/ui/PaletteContext.js +142 -0
  554. package/esm/ui/PluggableComponent.d.ts +10 -0
  555. package/esm/ui/PluggableComponent.js +19 -0
  556. package/esm/ui/PluggableComponents.d.ts +29 -0
  557. package/esm/ui/PluggableComponents.js +28 -0
  558. package/esm/ui/PluggableElements.d.ts +23 -0
  559. package/esm/ui/PluggableElements.js +24 -0
  560. package/esm/ui/PluginStoreCard.d.ts +17 -0
  561. package/esm/ui/PluginStoreCard.js +45 -0
  562. package/esm/ui/PopoverPicker.d.ts +6 -0
  563. package/esm/ui/PopoverPicker.js +25 -0
  564. package/esm/ui/PrerenderedCanvas.d.ts +1 -1
  565. package/esm/ui/PrerenderedCanvas.js +5 -4
  566. package/esm/ui/ProgressChip.d.ts +37 -0
  567. package/esm/ui/ProgressChip.js +66 -0
  568. package/esm/ui/RedErrorMessageBox.d.ts +1 -1
  569. package/esm/ui/RedErrorMessageBox.js +9 -3
  570. package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +5 -0
  571. package/esm/ui/RefNameAutocomplete/EndAdornment.js +31 -0
  572. package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -0
  573. package/esm/ui/RefNameAutocomplete/HelpDialog.js +7 -0
  574. package/esm/ui/RefNameAutocomplete/SearchOption.d.ts +13 -0
  575. package/esm/ui/RefNameAutocomplete/SearchOption.js +45 -0
  576. package/esm/ui/RefNameAutocomplete/index.d.ts +21 -0
  577. package/esm/ui/RefNameAutocomplete/index.js +84 -0
  578. package/esm/ui/RefNameAutocomplete/util.d.ts +62 -0
  579. package/esm/ui/RefNameAutocomplete/util.js +209 -0
  580. package/esm/ui/ReplaceCurrentViewButton.d.ts +19 -0
  581. package/esm/ui/ReplaceCurrentViewButton.js +22 -0
  582. package/esm/ui/ResizeHandle.d.ts +15 -7
  583. package/esm/ui/ResizeHandle.js +73 -53
  584. package/esm/ui/ReturnToImportFormDialog.d.ts +1 -1
  585. package/esm/ui/ReturnToImportFormDialog.js +7 -9
  586. package/esm/ui/SanitizedHTML.d.ts +6 -1
  587. package/esm/ui/SanitizedHTML.js +7 -47
  588. package/esm/ui/ScrollChrome.d.ts +13 -0
  589. package/esm/ui/ScrollChrome.js +11 -0
  590. package/esm/ui/ScrollEdgeShadow.d.ts +41 -0
  591. package/esm/ui/ScrollEdgeShadow.js +77 -0
  592. package/esm/ui/ScrollZoomToggle.d.ts +15 -0
  593. package/esm/ui/ScrollZoomToggle.js +75 -0
  594. package/esm/ui/SequenceAdapterInputs.d.ts +9 -0
  595. package/esm/ui/SequenceAdapterInputs.js +30 -0
  596. package/esm/ui/SessionJsonPanel.d.ts +3 -0
  597. package/esm/ui/SessionJsonPanel.js +14 -0
  598. package/esm/ui/SettingsChangesTable.d.ts +15 -0
  599. package/esm/ui/SettingsChangesTable.js +87 -0
  600. package/esm/ui/ShareLinkField.d.ts +4 -0
  601. package/esm/ui/ShareLinkField.js +15 -0
  602. package/esm/ui/SingleSlider.d.ts +8 -0
  603. package/esm/ui/SingleSlider.js +11 -0
  604. package/esm/ui/SizeSliderRow.d.ts +14 -0
  605. package/esm/ui/SizeSliderRow.js +48 -0
  606. package/esm/ui/SliderTooltip.d.ts +2 -0
  607. package/esm/ui/SliderTooltip.js +17 -0
  608. package/esm/ui/Snackbar.d.ts +4 -2
  609. package/esm/ui/Snackbar.js +11 -8
  610. package/esm/ui/SnackbarContents.d.ts +1 -1
  611. package/esm/ui/SnackbarContents.js +21 -3
  612. package/esm/ui/SnackbarModel.d.ts +40 -0
  613. package/esm/ui/SnackbarModel.js +96 -52
  614. package/esm/ui/StackTraceButton.d.ts +5 -0
  615. package/esm/ui/StackTraceButton.js +16 -0
  616. package/esm/ui/StatusProgressBar.d.ts +37 -0
  617. package/esm/ui/StatusProgressBar.js +76 -0
  618. package/esm/ui/SubmitDialog.d.ts +6 -0
  619. package/esm/ui/SubmitDialog.js +9 -0
  620. package/esm/ui/SubmitForm.d.ts +23 -0
  621. package/esm/ui/SubmitForm.js +23 -0
  622. package/esm/ui/SvgColorLegend.d.ts +18 -0
  623. package/esm/ui/SvgColorLegend.js +106 -0
  624. package/esm/ui/TagTextField.d.ts +40 -0
  625. package/esm/ui/TagTextField.js +32 -0
  626. package/esm/ui/VerticalScrollbar.d.ts +24 -0
  627. package/esm/ui/VerticalScrollbar.js +104 -0
  628. package/esm/ui/ViewLoadingScreen.d.ts +25 -0
  629. package/esm/ui/ViewLoadingScreen.js +52 -0
  630. package/esm/ui/addExtensionElement.d.ts +18 -0
  631. package/esm/ui/addExtensionElement.js +23 -0
  632. package/esm/ui/buildExtraTrackMenuItems.d.ts +22 -0
  633. package/esm/ui/buildExtraTrackMenuItems.js +14 -0
  634. package/esm/ui/colorScale.d.ts +92 -0
  635. package/esm/ui/colorScale.js +72 -0
  636. package/esm/ui/colorSwatchStyle.d.ts +9 -0
  637. package/esm/ui/colorSwatchStyle.js +11 -0
  638. package/esm/ui/colors.d.ts +125 -8
  639. package/esm/ui/colors.js +364 -1
  640. package/esm/ui/extensionSelectors.d.ts +38 -0
  641. package/esm/ui/extensionSelectors.js +49 -0
  642. package/esm/ui/filterMenuItems.d.ts +112 -0
  643. package/esm/ui/filterMenuItems.js +86 -0
  644. package/esm/ui/formatErrorStack.d.ts +1 -0
  645. package/esm/ui/formatErrorStack.js +56 -0
  646. package/esm/ui/gpuFallback.d.ts +33 -0
  647. package/esm/ui/gpuFallback.js +39 -0
  648. package/esm/ui/hoverBoxStyle.d.ts +23 -0
  649. package/esm/ui/hoverBoxStyle.js +28 -0
  650. package/esm/ui/index.d.ts +77 -5
  651. package/esm/ui/index.js +83 -20
  652. package/esm/ui/inlineMenuRowWidth.d.ts +1 -0
  653. package/esm/ui/inlineMenuRowWidth.js +8 -0
  654. package/esm/ui/launchTargetsMenuItem.d.ts +18 -0
  655. package/esm/ui/launchTargetsMenuItem.js +24 -0
  656. package/esm/ui/launchViewMenu.d.ts +4 -0
  657. package/esm/ui/launchViewMenu.js +46 -0
  658. package/esm/ui/legendMenuItem.d.ts +16 -0
  659. package/esm/ui/legendMenuItem.js +17 -0
  660. package/esm/ui/legendSpec.d.ts +69 -0
  661. package/esm/ui/legendSpec.js +69 -0
  662. package/esm/ui/loadingDotKeyframes.d.ts +18 -0
  663. package/esm/ui/loadingDotKeyframes.js +17 -0
  664. package/esm/ui/makeSizeMenu.d.ts +24 -0
  665. package/esm/ui/makeSizeMenu.js +58 -0
  666. package/esm/ui/mapStackTrace.d.ts +8 -0
  667. package/esm/ui/mapStackTrace.js +108 -0
  668. package/esm/ui/measureLegendText.d.ts +1 -0
  669. package/esm/ui/measureLegendText.js +8 -0
  670. package/esm/ui/menuItemAdornment.d.ts +22 -0
  671. package/esm/ui/menuItemAdornment.js +28 -0
  672. package/esm/ui/menuItems.d.ts +23 -0
  673. package/esm/ui/menuItems.js +21 -0
  674. package/esm/ui/menuLabels.d.ts +41 -0
  675. package/esm/ui/menuLabels.js +43 -0
  676. package/esm/ui/multiTrackMenuItems.d.ts +25 -0
  677. package/esm/ui/multiTrackMenuItems.js +15 -0
  678. package/esm/ui/palette.d.ts +561 -0
  679. package/esm/ui/palette.js +785 -0
  680. package/esm/ui/parseError.d.ts +4 -0
  681. package/esm/ui/parseError.js +18 -0
  682. package/esm/ui/persistentScrollbarStyle.d.ts +49 -0
  683. package/esm/ui/persistentScrollbarStyle.js +53 -0
  684. package/esm/ui/radioSubMenu.d.ts +33 -0
  685. package/esm/ui/radioSubMenu.js +32 -0
  686. package/esm/ui/react-colorful.js +5 -1
  687. package/esm/ui/replaceViewAction.d.ts +31 -0
  688. package/esm/ui/replaceViewAction.js +39 -0
  689. package/esm/ui/rewriteExternalAnchors.d.ts +1 -0
  690. package/esm/ui/rewriteExternalAnchors.js +8 -0
  691. package/esm/ui/scrollZoomLabels.d.ts +17 -0
  692. package/esm/ui/scrollZoomLabels.js +22 -0
  693. package/esm/ui/showSubMenu.d.ts +19 -0
  694. package/esm/ui/showSubMenu.js +30 -0
  695. package/esm/ui/sliderScale.d.ts +6 -0
  696. package/esm/ui/sliderScale.js +30 -0
  697. package/esm/ui/statusProgressKeyframes.d.ts +6 -0
  698. package/esm/ui/statusProgressKeyframes.js +14 -0
  699. package/esm/ui/stripStackTraceMessage.d.ts +1 -0
  700. package/esm/ui/stripStackTraceMessage.js +9 -0
  701. package/esm/ui/styleTheme.d.ts +158 -0
  702. package/esm/ui/styleTheme.js +115 -0
  703. package/esm/ui/submenuAim.d.ts +30 -0
  704. package/esm/ui/submenuAim.js +37 -0
  705. package/esm/ui/theme.d.ts +268 -30
  706. package/esm/ui/theme.js +250 -350
  707. package/esm/ui/toggleMenuItems.d.ts +42 -0
  708. package/esm/ui/toggleMenuItems.js +61 -0
  709. package/esm/ui/useAssemblySelection.d.ts +153 -0
  710. package/esm/ui/useAssemblySelection.js +54 -0
  711. package/esm/ui/useCoalescedPointer.d.ts +36 -0
  712. package/esm/ui/useCoalescedPointer.js +60 -0
  713. package/esm/ui/useCopyToClipboard.d.ts +15 -0
  714. package/esm/ui/useCopyToClipboard.js +41 -0
  715. package/esm/ui/useExportSvgPreference.d.ts +1 -0
  716. package/esm/ui/useExportSvgPreference.js +4 -0
  717. package/esm/ui/useMouseTracking.d.ts +71 -0
  718. package/esm/ui/useMouseTracking.js +179 -0
  719. package/esm/ui/useRecentLocations.d.ts +28 -0
  720. package/esm/ui/useRecentLocations.js +31 -0
  721. package/esm/ui/viewHeaderHeight.d.ts +1 -0
  722. package/esm/ui/viewHeaderHeight.js +1 -0
  723. package/esm/ui/wrapComponent.d.ts +47 -0
  724. package/esm/ui/wrapComponent.js +58 -0
  725. package/esm/ui/zIndexes.d.ts +28 -0
  726. package/esm/ui/zIndexes.js +38 -0
  727. package/esm/util/Base1DUtils.d.ts +207 -17
  728. package/esm/util/Base1DUtils.js +316 -173
  729. package/esm/util/Base1DViewModel.d.ts +99 -21
  730. package/esm/util/Base1DViewModel.js +151 -41
  731. package/esm/util/FileSaver/index.d.ts +1 -0
  732. package/esm/util/FileSaver/index.js +27 -0
  733. package/esm/util/IntervalTree.d.ts +18 -39
  734. package/esm/util/IntervalTree.js +63 -244
  735. package/esm/util/SvgCanvas.d.ts +83 -0
  736. package/esm/util/SvgCanvas.js +520 -0
  737. package/esm/util/TimeTraveller.d.ts +12 -0
  738. package/esm/util/TimeTraveller.js +130 -27
  739. package/esm/util/aborting.d.ts +56 -4
  740. package/esm/util/aborting.js +112 -25
  741. package/esm/util/adapterMetadata.d.ts +20 -0
  742. package/esm/util/adapterMetadata.js +40 -0
  743. package/esm/util/addAndShowTrack.d.ts +19 -0
  744. package/esm/util/addAndShowTrack.js +27 -0
  745. package/esm/util/addRelativeUris.d.ts +29 -0
  746. package/esm/util/addRelativeUris.js +78 -0
  747. package/esm/util/addTrackComponent.d.ts +72 -0
  748. package/esm/util/addTrackComponent.js +53 -0
  749. package/esm/util/addTrackFromWidget.d.ts +91 -0
  750. package/esm/util/addTrackFromWidget.js +91 -0
  751. package/esm/util/aggregateFieldName.d.ts +10 -0
  752. package/esm/util/aggregateFieldName.js +8 -0
  753. package/esm/util/analytics.d.ts +32 -3
  754. package/esm/util/analytics.js +135 -49
  755. package/esm/util/animationAllowed.d.ts +26 -0
  756. package/esm/util/animationAllowed.js +35 -0
  757. package/esm/util/applyRowResizeWheel.d.ts +15 -0
  758. package/esm/util/applyRowResizeWheel.js +23 -0
  759. package/esm/util/assemblyConfigUtils.d.ts +144 -0
  760. package/esm/util/assemblyConfigUtils.js +498 -0
  761. package/esm/util/bandHeight.d.ts +63 -0
  762. package/esm/util/bandHeight.js +85 -0
  763. package/esm/util/bandLayout.d.ts +51 -0
  764. package/esm/util/bandLayout.js +36 -0
  765. package/esm/util/bezierConnector.d.ts +15 -0
  766. package/esm/util/bezierConnector.js +101 -0
  767. package/esm/util/bgzfWorkerPool.d.ts +24 -0
  768. package/esm/util/bgzfWorkerPool.js +27 -0
  769. package/esm/util/binnedAggregate.d.ts +17 -0
  770. package/esm/util/binnedAggregate.js +275 -0
  771. package/esm/util/blockTypes.d.ts +64 -45
  772. package/esm/util/blockTypes.js +67 -74
  773. package/esm/util/bpUtils.d.ts +81 -0
  774. package/esm/util/bpUtils.js +103 -0
  775. package/esm/util/cacheBudgets.d.ts +55 -0
  776. package/esm/util/cacheBudgets.js +55 -0
  777. package/esm/util/cachedSetup.d.ts +51 -0
  778. package/esm/util/cachedSetup.js +87 -0
  779. package/esm/util/calculateDynamicBlocks.d.ts +5 -0
  780. package/esm/util/calculateDynamicBlocks.js +85 -82
  781. package/esm/util/calculateStaticBlocks.d.ts +2 -3
  782. package/esm/util/calculateStaticBlocks.js +48 -71
  783. package/esm/util/categoricalField.d.ts +56 -0
  784. package/esm/util/categoricalField.js +73 -0
  785. package/esm/util/chooseGridPitch.d.ts +9 -0
  786. package/esm/util/chooseGridPitch.js +31 -0
  787. package/esm/util/clampToContig.d.ts +43 -0
  788. package/esm/util/clampToContig.js +47 -0
  789. package/esm/util/cmpStr.d.ts +1 -0
  790. package/esm/util/cmpStr.js +7 -0
  791. package/esm/util/coarseStripHTML.js +2 -15
  792. package/esm/util/color/cssColorsLevel4.d.ts +1 -0
  793. package/esm/util/color/cssColorsLevel4.js +7 -2
  794. package/esm/util/color/index.d.ts +84 -3
  795. package/esm/util/color/index.js +197 -25
  796. package/esm/util/color-bits/bit.d.ts +4 -0
  797. package/esm/util/color-bits/bit.js +37 -0
  798. package/esm/util/color-bits/convert.d.ts +23 -0
  799. package/esm/util/color-bits/convert.js +294 -0
  800. package/esm/util/color-bits/core.d.ts +34 -0
  801. package/esm/util/color-bits/core.js +67 -0
  802. package/esm/util/color-bits/format.d.ts +24 -0
  803. package/esm/util/color-bits/format.js +82 -0
  804. package/esm/util/color-bits/functions.d.ts +33 -0
  805. package/esm/util/color-bits/functions.js +70 -0
  806. package/esm/util/color-bits/index.d.ts +5 -0
  807. package/esm/util/color-bits/index.js +4 -0
  808. package/esm/util/color-bits/parse.d.ts +17 -0
  809. package/esm/util/color-bits/parse.js +382 -0
  810. package/esm/util/colorBits.d.ts +39 -0
  811. package/esm/util/colorBits.js +155 -0
  812. package/esm/util/colorRamp.d.ts +81 -0
  813. package/esm/util/colorRamp.js +244 -0
  814. package/esm/util/colorScale.d.ts +156 -0
  815. package/esm/util/colorScale.js +243 -0
  816. package/esm/util/colorSchemes.d.ts +21 -0
  817. package/esm/util/colorSchemes.js +30 -0
  818. package/esm/util/colord.d.ts +8 -0
  819. package/esm/util/colord.js +43 -191
  820. package/esm/util/convertCodingSequenceToPeptides.d.ts +17 -3
  821. package/esm/util/convertCodingSequenceToPeptides.js +51 -4
  822. package/esm/util/copyText.d.ts +18 -0
  823. package/esm/util/copyText.js +30 -0
  824. package/esm/util/copyToClipboard.d.ts +4 -0
  825. package/esm/util/copyToClipboard.js +58 -0
  826. package/esm/util/createAbortRotation.d.ts +115 -0
  827. package/esm/util/createAbortRotation.js +116 -0
  828. package/esm/util/createSvgRasterCanvas.d.ts +17 -0
  829. package/esm/util/createSvgRasterCanvas.js +22 -0
  830. package/esm/util/crypto.d.ts +24 -0
  831. package/esm/util/crypto.js +85 -2
  832. package/esm/util/cssColorParse.d.ts +15 -0
  833. package/esm/util/cssColorParse.js +53 -0
  834. package/esm/util/dataGridUtils.d.ts +9 -0
  835. package/esm/util/dataGridUtils.js +36 -0
  836. package/esm/util/dedupe.js +1 -0
  837. package/esm/util/deepEqual.d.ts +8 -0
  838. package/esm/util/deepEqual.js +22 -0
  839. package/esm/util/deepMerge.d.ts +20 -0
  840. package/esm/util/deepMerge.js +44 -0
  841. package/esm/util/diagonalizeRegions.d.ts +22 -0
  842. package/esm/util/diagonalizeRegions.js +187 -0
  843. package/esm/util/environment.d.ts +4 -0
  844. package/esm/util/environment.js +43 -0
  845. package/esm/util/eventPoint.d.ts +32 -0
  846. package/esm/util/eventPoint.js +28 -0
  847. package/esm/util/expandLooseSearchIndex.d.ts +19 -0
  848. package/esm/util/expandLooseSearchIndex.js +29 -0
  849. package/esm/util/featureTable.d.ts +224 -0
  850. package/esm/util/featureTable.js +366 -0
  851. package/esm/util/featureTransforms.d.ts +80 -0
  852. package/esm/util/featureTransforms.js +1579 -0
  853. package/esm/util/featureTypes.d.ts +24 -0
  854. package/esm/util/featureTypes.js +35 -0
  855. package/esm/util/fetchAndMaybeUnzip.d.ts +6 -0
  856. package/esm/util/fetchAndMaybeUnzip.js +71 -0
  857. package/esm/util/fetchContext.d.ts +81 -0
  858. package/esm/util/fetchContext.js +59 -0
  859. package/esm/util/fetchHub.d.ts +17 -0
  860. package/esm/util/fetchHub.js +31 -0
  861. package/esm/util/fetchJson.d.ts +1 -0
  862. package/esm/util/fetchJson.js +7 -0
  863. package/esm/util/fetchPhases.d.ts +77 -0
  864. package/esm/util/fetchPhases.js +1 -0
  865. package/esm/util/fetchSeq.d.ts +4 -1
  866. package/esm/util/fetchSeq.js +18 -6
  867. package/esm/util/fieldReader.d.ts +17 -0
  868. package/esm/util/fieldReader.js +62 -0
  869. package/esm/util/fileHandleStore.d.ts +19 -2
  870. package/esm/util/fileHandleStore.js +95 -35
  871. package/esm/util/flatbush/index.d.ts +27 -6
  872. package/esm/util/flatbush/index.js +194 -218
  873. package/esm/util/formatBytes.d.ts +9 -0
  874. package/esm/util/formatBytes.js +18 -0
  875. package/esm/util/formatFastaStrings.d.ts +13 -0
  876. package/esm/util/formatFastaStrings.js +13 -0
  877. package/esm/util/formatGuessers.d.ts +30 -0
  878. package/esm/util/formatGuessers.js +69 -0
  879. package/esm/util/formatRelativeTime.d.ts +1 -0
  880. package/esm/util/formatRelativeTime.js +25 -0
  881. package/esm/util/frameCoalescer.d.ts +30 -0
  882. package/esm/util/frameCoalescer.js +22 -0
  883. package/esm/util/freezeDeep.d.ts +26 -0
  884. package/esm/util/freezeDeep.js +39 -0
  885. package/esm/util/geneticCodes.d.ts +56 -0
  886. package/esm/util/geneticCodes.js +371 -0
  887. package/esm/util/getFileName.d.ts +11 -0
  888. package/esm/util/getFileName.js +34 -0
  889. package/esm/util/getLocationUri.d.ts +49 -0
  890. package/esm/util/getLocationUri.js +63 -0
  891. package/esm/util/getRelativeX.d.ts +4 -0
  892. package/esm/util/getRelativeX.js +7 -0
  893. package/esm/util/getStr.d.ts +6 -0
  894. package/esm/util/getStr.js +15 -0
  895. package/esm/util/groupKeys.d.ts +77 -0
  896. package/esm/util/groupKeys.js +155 -0
  897. package/esm/util/highlights.d.ts +25 -0
  898. package/esm/util/highlights.js +87 -0
  899. package/esm/util/hooks.d.ts +189 -0
  900. package/esm/util/hooks.js +485 -0
  901. package/esm/util/htmlText.d.ts +13 -0
  902. package/esm/util/htmlText.js +66 -0
  903. package/esm/util/idMaker.d.ts +1 -1
  904. package/esm/util/idMaker.js +31 -18
  905. package/esm/util/index.d.ts +82 -268
  906. package/esm/util/index.js +137 -853
  907. package/esm/util/indexCandidates.d.ts +20 -0
  908. package/esm/util/indexCandidates.js +43 -0
  909. package/esm/util/installClearHoverOnSurfaceMove.d.ts +40 -0
  910. package/esm/util/installClearHoverOnSurfaceMove.js +41 -0
  911. package/esm/util/installFetch.d.ts +234 -0
  912. package/esm/util/installFetch.js +205 -0
  913. package/esm/util/installInitAutorun.d.ts +63 -0
  914. package/esm/util/installInitAutorun.js +107 -0
  915. package/esm/util/installPrerequisiteFetch.d.ts +115 -0
  916. package/esm/util/installPrerequisiteFetch.js +111 -0
  917. package/esm/util/intervals.d.ts +20 -0
  918. package/esm/util/intervals.js +37 -0
  919. package/esm/util/io/RemoteFileWithRangeCache.d.ts +10 -11
  920. package/esm/util/io/RemoteFileWithRangeCache.js +10 -148
  921. package/esm/util/io/index.d.ts +39 -2
  922. package/esm/util/io/index.js +120 -12
  923. package/esm/util/isDataCurrent.d.ts +9 -0
  924. package/esm/util/isDataCurrent.js +12 -0
  925. package/esm/util/isTextEntryFocused.d.ts +7 -0
  926. package/esm/util/isTextEntryFocused.js +16 -0
  927. package/esm/util/isWebWorker.js +1 -2
  928. package/esm/util/iupac.d.ts +4 -0
  929. package/esm/util/iupac.js +59 -0
  930. package/esm/util/jexl.js +146 -19
  931. package/esm/util/jexlFilterRows.d.ts +89 -0
  932. package/esm/util/jexlFilterRows.js +252 -0
  933. package/esm/util/jexlFilters.d.ts +68 -0
  934. package/esm/util/jexlFilters.js +61 -0
  935. package/esm/util/jexlStrings.d.ts +21 -1
  936. package/esm/util/jexlStrings.js +20 -14
  937. package/esm/util/layouts/GranularRectLayout.d.ts +20 -25
  938. package/esm/util/layouts/GranularRectLayout.js +116 -356
  939. package/esm/util/layouts/index.d.ts +1 -7
  940. package/esm/util/layouts/index.js +2 -6
  941. package/esm/util/layouts/intervalUtils.d.ts +12 -1
  942. package/esm/util/layouts/intervalUtils.js +13 -31
  943. package/esm/util/layouts/placeRect.d.ts +50 -0
  944. package/esm/util/layouts/placeRect.js +97 -0
  945. package/esm/util/lazyAfterAttach.d.ts +13 -0
  946. package/esm/util/lazyAfterAttach.js +31 -0
  947. package/esm/util/lazyWithPreload.d.ts +19 -0
  948. package/esm/util/lazyWithPreload.js +27 -0
  949. package/esm/util/leadingEdgeAutorun.d.ts +40 -0
  950. package/esm/util/leadingEdgeAutorun.js +51 -0
  951. package/esm/util/legendCandidates.d.ts +72 -0
  952. package/esm/util/legendCandidates.js +138 -0
  953. package/esm/util/librpc.d.ts +5 -2
  954. package/esm/util/librpc.js +6 -1
  955. package/esm/util/linkify.js +2 -0
  956. package/esm/util/locString.d.ts +72 -0
  957. package/esm/util/locString.js +178 -7
  958. package/esm/util/locStringsToRegions.d.ts +10 -0
  959. package/esm/util/locStringsToRegions.js +35 -0
  960. package/esm/util/localStorage.d.ts +36 -0
  961. package/esm/util/localStorage.js +137 -0
  962. package/esm/util/makeAssembly.d.ts +54 -0
  963. package/esm/util/makeAssembly.js +52 -0
  964. package/esm/util/makeTrackId.d.ts +14 -0
  965. package/esm/util/makeTrackId.js +14 -0
  966. package/esm/util/markEncoding.d.ts +150 -0
  967. package/esm/util/markEncoding.js +845 -0
  968. package/esm/util/markEncodingTypes.d.ts +588 -0
  969. package/esm/util/markEncodingTypes.js +8 -0
  970. package/esm/util/matchTrackId.d.ts +11 -0
  971. package/esm/util/matchTrackId.js +14 -0
  972. package/esm/util/measureText.d.ts +24 -0
  973. package/esm/util/measureText.js +51 -0
  974. package/esm/util/mst-reflection.d.ts +3 -11
  975. package/esm/util/mst-reflection.js +3 -52
  976. package/esm/util/mstUtils.d.ts +97 -0
  977. package/esm/util/mstUtils.js +137 -0
  978. package/esm/util/nanoid.d.ts +0 -4
  979. package/esm/util/nanoid.js +10 -20
  980. package/esm/util/numericUtils.d.ts +27 -0
  981. package/esm/util/numericUtils.js +143 -0
  982. package/esm/util/numericValue.d.ts +14 -0
  983. package/esm/util/numericValue.js +34 -0
  984. package/esm/util/objectUtils.d.ts +2 -0
  985. package/esm/util/objectUtils.js +9 -0
  986. package/esm/util/offscreenCanvasPonyfill.d.ts +5 -4
  987. package/esm/util/offscreenCanvasPonyfill.js +5 -47
  988. package/esm/util/openFeatureWidget.d.ts +38 -0
  989. package/esm/util/openFeatureWidget.js +64 -0
  990. package/esm/util/openViews.d.ts +17 -0
  991. package/esm/util/openViews.js +22 -0
  992. package/esm/util/paintLayer.d.ts +32 -0
  993. package/esm/util/paintLayer.js +33 -0
  994. package/esm/util/parentWalk.d.ts +32 -0
  995. package/esm/util/parentWalk.js +84 -0
  996. package/esm/util/parseLineByLine.d.ts +44 -2
  997. package/esm/util/parseLineByLine.js +150 -15
  998. package/esm/util/parseMotifList.d.ts +17 -0
  999. package/esm/util/parseMotifList.js +69 -0
  1000. package/esm/util/pluginStore.d.ts +111 -0
  1001. package/esm/util/pluginStore.js +254 -0
  1002. package/esm/util/pointerPresence.d.ts +5 -0
  1003. package/esm/util/pointerPresence.js +21 -0
  1004. package/esm/util/preloadComponent.d.ts +5 -0
  1005. package/esm/util/preloadComponent.js +11 -0
  1006. package/esm/util/progress.d.ts +459 -0
  1007. package/esm/util/progress.js +821 -0
  1008. package/esm/util/quantileExtent.d.ts +49 -0
  1009. package/esm/util/quantileExtent.js +162 -0
  1010. package/esm/util/range.d.ts +46 -1
  1011. package/esm/util/range.js +68 -2
  1012. package/esm/util/renameRegions.d.ts +41 -0
  1013. package/esm/util/renameRegions.js +143 -0
  1014. package/esm/util/renderToStaticMarkup.d.ts +2 -0
  1015. package/esm/util/renderToStaticMarkup.js +60 -0
  1016. package/esm/util/reorder.d.ts +35 -0
  1017. package/esm/util/reorder.js +83 -0
  1018. package/esm/util/resolveRowHeight.d.ts +27 -0
  1019. package/esm/util/resolveRowHeight.js +30 -0
  1020. package/esm/util/revlist.d.ts +13 -0
  1021. package/esm/util/revlist.js +14 -0
  1022. package/esm/util/rowStackGeometry.d.ts +66 -0
  1023. package/esm/util/rowStackGeometry.js +70 -0
  1024. package/esm/util/rpc.d.ts +16 -1
  1025. package/esm/util/rpc.js +12 -1
  1026. package/esm/util/rxjs.d.ts +30 -2
  1027. package/esm/util/rxjs.js +85 -10
  1028. package/esm/util/sameStrings.d.ts +16 -0
  1029. package/esm/util/sameStrings.js +20 -0
  1030. package/esm/util/samplesTsv.d.ts +49 -0
  1031. package/esm/util/samplesTsv.js +86 -0
  1032. package/esm/util/scheduleDetachedDestroy.d.ts +18 -0
  1033. package/esm/util/scheduleDetachedDestroy.js +24 -0
  1034. package/esm/util/scrollLatch.d.ts +5 -0
  1035. package/esm/util/scrollLatch.js +67 -0
  1036. package/esm/util/selectEncodedFeature.d.ts +16 -0
  1037. package/esm/util/selectEncodedFeature.js +34 -0
  1038. package/esm/util/selectNamedRegions.d.ts +136 -0
  1039. package/esm/util/selectNamedRegions.js +222 -0
  1040. package/esm/util/seqUtils.d.ts +17 -0
  1041. package/esm/util/seqUtils.js +80 -0
  1042. package/esm/util/sessionServices.d.ts +29 -0
  1043. package/esm/util/sessionServices.js +46 -0
  1044. package/esm/util/sessionSharing.d.ts +40 -0
  1045. package/esm/util/sessionSharing.js +154 -0
  1046. package/esm/util/sessionStorage.d.ts +1 -0
  1047. package/esm/util/sessionStorage.js +15 -0
  1048. package/esm/util/setStackTraceLimit.d.ts +6 -0
  1049. package/esm/util/setStackTraceLimit.js +20 -0
  1050. package/esm/util/shapeNameList.d.ts +2 -0
  1051. package/esm/util/shapeNameList.js +6 -0
  1052. package/esm/util/shapeNames.d.ts +7 -0
  1053. package/esm/util/shapeNames.js +11 -0
  1054. package/esm/util/simpleFeature.d.ts +111 -4
  1055. package/esm/util/simpleFeature.js +181 -29
  1056. package/esm/util/springAnimate.d.ts +20 -0
  1057. package/esm/util/springAnimate.js +80 -0
  1058. package/esm/util/starFusion.d.ts +26 -0
  1059. package/esm/util/starFusion.js +37 -0
  1060. package/esm/util/stats.d.ts +25 -2
  1061. package/esm/util/stats.js +39 -8
  1062. package/esm/util/stepTables.d.ts +82 -0
  1063. package/esm/util/stepTables.js +243 -0
  1064. package/esm/util/stringUtils.d.ts +5 -0
  1065. package/esm/util/stringUtils.js +34 -0
  1066. package/esm/util/svAlt.d.ts +145 -0
  1067. package/esm/util/svAlt.js +364 -0
  1068. package/esm/util/svgColorProps.d.ts +18 -0
  1069. package/esm/util/svgColorProps.js +55 -0
  1070. package/esm/util/systemColorScheme.d.ts +12 -0
  1071. package/esm/util/systemColorScheme.js +27 -0
  1072. package/esm/util/tabix.d.ts +125 -0
  1073. package/esm/util/tabix.js +148 -0
  1074. package/esm/util/tags.d.ts +2 -0
  1075. package/esm/util/tags.js +5 -0
  1076. package/esm/util/temporaryAssembly.d.ts +21 -0
  1077. package/esm/util/temporaryAssembly.js +29 -0
  1078. package/esm/util/thresholdScale.d.ts +91 -0
  1079. package/esm/util/thresholdScale.js +166 -0
  1080. package/esm/util/tickLabels.d.ts +36 -0
  1081. package/esm/util/tickLabels.js +45 -0
  1082. package/esm/util/timeGate.d.ts +25 -0
  1083. package/esm/util/timeGate.js +78 -0
  1084. package/esm/util/trackConfigDelta.d.ts +84 -0
  1085. package/esm/util/trackConfigDelta.js +206 -0
  1086. package/esm/util/tracks.d.ts +431 -30
  1087. package/esm/util/tracks.js +952 -185
  1088. package/esm/util/translateTranscript.d.ts +44 -0
  1089. package/esm/util/translateTranscript.js +102 -0
  1090. package/esm/util/tss-react/cssAndCx.js +11 -66
  1091. package/esm/util/tss-react/index.d.ts +11 -2
  1092. package/esm/util/tss-react/index.js +9 -2
  1093. package/esm/util/tss-react/makeStyles.js +7 -4
  1094. package/esm/util/tss-react/mergeClasses.js +1 -0
  1095. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  1096. package/esm/util/tss-react/tools/classnames.js +3 -0
  1097. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  1098. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  1099. package/esm/util/tss-react/types.d.ts +1 -1
  1100. package/esm/util/tss-react/types.js +1 -6
  1101. package/esm/util/types/ElementId.js +1 -1
  1102. package/esm/util/types/data.d.ts +73 -0
  1103. package/esm/util/types/data.js +41 -0
  1104. package/esm/util/types/index.d.ts +459 -121
  1105. package/esm/util/types/index.js +96 -64
  1106. package/esm/util/types/isAny.d.ts +11 -0
  1107. package/esm/util/types/isAny.js +1 -0
  1108. package/esm/util/types/mst.d.ts +74 -47
  1109. package/esm/util/types/mst.js +31 -22
  1110. package/esm/util/types/predicate.d.ts +9 -0
  1111. package/esm/util/types/predicate.js +1 -0
  1112. package/esm/util/types/renameIds.d.ts +1 -0
  1113. package/esm/util/types/renameIds.js +29 -0
  1114. package/esm/util/types/renderingServices.d.ts +16 -0
  1115. package/esm/util/types/renderingServices.js +1 -0
  1116. package/esm/util/types/services.d.ts +55 -0
  1117. package/esm/util/types/services.js +10 -0
  1118. package/esm/util/types/util.d.ts +8 -2
  1119. package/esm/util/unknownSnapshotKeys.d.ts +51 -0
  1120. package/esm/util/unknownSnapshotKeys.js +82 -0
  1121. package/esm/util/unzip.d.ts +1 -0
  1122. package/esm/util/unzip.js +6 -0
  1123. package/esm/util/useEventCallback.d.ts +1 -0
  1124. package/esm/util/useEventCallback.js +16 -0
  1125. package/esm/util/useFeatureSequence.d.ts +13 -7
  1126. package/esm/util/useFeatureSequence.js +55 -77
  1127. package/esm/util/useFetch.d.ts +55 -0
  1128. package/esm/util/useFetch.js +197 -0
  1129. package/esm/util/useFetchPlugins.d.ts +16 -0
  1130. package/esm/util/useFetchPlugins.js +18 -0
  1131. package/esm/util/useMeasure.d.ts +11 -1
  1132. package/esm/util/useMeasure.js +20 -6
  1133. package/esm/util/usePanZoom.d.ts +75 -0
  1134. package/esm/util/usePanZoom.js +175 -0
  1135. package/esm/util/usePanelVirtualScroll.d.ts +9 -0
  1136. package/esm/util/usePanelVirtualScroll.js +15 -0
  1137. package/esm/util/usePointerDrag.d.ts +37 -0
  1138. package/esm/util/usePointerDrag.js +61 -0
  1139. package/esm/util/useRafCommit.d.ts +4 -0
  1140. package/esm/util/useRafCommit.js +50 -0
  1141. package/esm/util/useResizeDrag.d.ts +91 -0
  1142. package/esm/util/useResizeDrag.js +105 -0
  1143. package/esm/util/useRowVirtualScroll.d.ts +9 -0
  1144. package/esm/util/useRowVirtualScroll.js +22 -0
  1145. package/esm/util/useVirtualScrollWheel.d.ts +23 -0
  1146. package/esm/util/useVirtualScrollWheel.js +74 -0
  1147. package/esm/util/viewHighlights.d.ts +3 -0
  1148. package/esm/util/viewHighlights.js +5 -0
  1149. package/esm/util/viewStatus.d.ts +90 -0
  1150. package/esm/util/viewStatus.js +54 -0
  1151. package/esm/util/virtualRange.d.ts +36 -0
  1152. package/esm/util/virtualRange.js +26 -0
  1153. package/esm/util/webStorage.d.ts +26 -0
  1154. package/esm/util/webStorage.js +92 -0
  1155. package/esm/util/wheelZoom.d.ts +65 -0
  1156. package/esm/util/wheelZoom.js +297 -0
  1157. package/esm/util/whenViewSettled.d.ts +74 -0
  1158. package/esm/util/whenViewSettled.js +77 -0
  1159. package/esm/util/withFeatureDetails.d.ts +34 -0
  1160. package/esm/util/withFeatureDetails.js +59 -0
  1161. package/esm/util/withLaunchInput.d.ts +174 -0
  1162. package/esm/util/withLaunchInput.js +274 -0
  1163. package/package.json +290 -820
  1164. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
  1165. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
  1166. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
  1167. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  1168. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
  1169. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  1170. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
  1171. package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
  1172. package/esm/ReExports/BaseFeatureDetails.js +0 -9
  1173. package/esm/ReExports/DataGrid.d.ts +0 -1
  1174. package/esm/ReExports/DataGrid.js +0 -1
  1175. package/esm/ReExports/index.d.ts +0 -1
  1176. package/esm/ReExports/index.js +0 -1
  1177. package/esm/configuration/util.d.ts +0 -10
  1178. package/esm/configuration/util.js +0 -123
  1179. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1180. package/esm/data_adapters/util.d.ts +0 -1
  1181. package/esm/data_adapters/util.js +0 -6
  1182. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1183. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1184. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1185. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1186. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1187. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1188. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1189. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1190. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1191. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1192. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1193. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1194. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1195. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1196. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1197. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1198. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1199. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1200. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1201. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1202. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1203. package/esm/rpc/baseRpcConfig.js +0 -10
  1204. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1205. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1206. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1207. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1208. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1209. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1210. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1211. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1212. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1213. package/esm/rpc/methods/CoreRender.js +0 -40
  1214. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1215. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1216. package/esm/rpc/methods/util.d.ts +0 -15
  1217. package/esm/rpc/methods/util.js +0 -7
  1218. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1219. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1220. package/esm/ui/MenuButton.d.ts +0 -1
  1221. package/esm/ui/MenuButton.js +0 -1
  1222. package/esm/ui/MenuItems.d.ts +0 -15
  1223. package/esm/ui/MenuItems.js +0 -59
  1224. package/esm/ui/useEvent.d.ts +0 -1
  1225. package/esm/ui/useEvent.js +0 -10
  1226. package/esm/util/blobToDataURL.d.ts +0 -1
  1227. package/esm/util/blobToDataURL.js +0 -14
  1228. package/esm/util/compositeMap.d.ts +0 -11
  1229. package/esm/util/compositeMap.js +0 -59
  1230. package/esm/util/flatqueue/index.d.ts +0 -11
  1231. package/esm/util/flatqueue/index.js +0 -61
  1232. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1233. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1234. package/esm/util/layouts/MultiLayout.js +0 -40
  1235. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1236. package/esm/util/layouts/PileupLayout.js +0 -202
  1237. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1238. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1239. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1240. package/esm/util/layouts/SceneGraph.js +0 -121
  1241. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1242. package/esm/util/makeAbortableReaction.js +0 -47
  1243. package/esm/util/map-obj/index.d.ts +0 -13
  1244. package/esm/util/map-obj/index.js +0 -92
  1245. package/esm/util/nextTick.d.ts +0 -1
  1246. package/esm/util/nextTick.js +0 -3
  1247. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1248. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1249. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1250. package/esm/util/offscreenCanvasUtils.js +0 -19
  1251. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1252. package/esm/util/renderToAbstractCanvas.js +0 -53
  1253. package/esm/util/stopToken.d.ts +0 -19
  1254. package/esm/util/stopToken.js +0 -90
  1255. package/esm/util/transferables.d.ts +0 -2
  1256. package/esm/util/transferables.js +0 -35
  1257. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1258. package/esm/util/tss-react/mui/index.js +0 -1
  1259. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1260. package/esm/util/tss-react/mui/mui.js +0 -5
  1261. package/esm/util/when.d.ts +0 -1
  1262. package/esm/util/when.js +0 -1
  1263. /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
  1264. /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
  1265. /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
@@ -0,0 +1,39 @@
1
+ import { abgrToCssRgba } from '@jbrowse/render-core/marks/colorFill';
2
+ import type { Feature } from './simpleFeature.ts';
3
+ export { abgrToCssRgba };
4
+ export { isCssColor, parseCssColorOr } from './cssColorParse.ts';
5
+ export { alpha, blend, darken, formatHEX, formatHEXA, formatRGBA, getAlpha, getBlue, getGreen, getLuminance, getRed, lighten, newColor, parse, toHSLA, toRGBA, } from './color-bits/index.ts';
6
+ export type { Color } from './color-bits/index.ts';
7
+ /**
8
+ * One raw attribute value as a usable BED color, or undefined when it isn't
9
+ * one. Deliberately strict: this feeds an *automatic* coloring path, so a value
10
+ * is only claimed when it is unambiguously an in-range BED triple. Anything
11
+ * else — a hex string, a `reserved` column holding something that isn't a color
12
+ * at all — reads as absent and leaves the configured default alone, rather than
13
+ * rendering as the magenta invalid-color sentinel. Takes the raw value so it
14
+ * stays dependency-free and directly testable.
15
+ */
16
+ export declare function featureItemRgb(raw: unknown): string | undefined;
17
+ /**
18
+ * The BED color a feature declares for itself, under either column name, or
19
+ * undefined if it declares none.
20
+ */
21
+ export declare function featureBedColor(feature: Feature): string | undefined;
22
+ export declare function parseCssColor(color: string | undefined | null): number;
23
+ export declare function cssColorToNormalizedRgb(color: string): [number, number, number];
24
+ export declare function cssColorToRgb(color: string): [number, number, number];
25
+ export declare function cssColorToRgba(color: string): [number, number, number, number];
26
+ export declare function packAbgr(r: number, g: number, b: number, a: number): number;
27
+ export declare function cssColorToABGR(color: string): number;
28
+ export declare function withAbgrAlpha(c: number, a: number): number;
29
+ export declare function normalizedRgbToABGR(r: number, g: number, b: number): number;
30
+ export declare function normalizedRgbToCss(c: readonly [number, number, number]): string;
31
+ export declare function normalizedRgbToCssRgba(c: readonly [number, number, number], alpha: number): string;
32
+ export declare function setAbgrFill(ctx: {
33
+ fillStyle: string | CanvasGradient | CanvasPattern;
34
+ }, c: number): void;
35
+ export declare function abgrRed(c: number): number;
36
+ export declare function abgrGreen(c: number): number;
37
+ export declare function abgrBlue(c: number): number;
38
+ export declare function abgrAlpha(c: number): number;
39
+ export declare function cssColorToNormalizedRgba(color: string): [number, number, number, number];
@@ -0,0 +1,155 @@
1
+ import { abgrToCssRgba } from '@jbrowse/render-core/marks/colorFill';
2
+ import { getAlpha, getBlue, getGreen, getRed, newColor, } from './color-bits/index.js';
3
+ import { bedTriple, parseCssColorOr } from './cssColorParse.js';
4
+ export { abgrToCssRgba };
5
+ export { isCssColor, parseCssColorOr } from './cssColorParse.js';
6
+ export { alpha, blend, darken, formatHEX, formatHEXA, formatRGBA, getAlpha, getBlue, getGreen, getLuminance, getRed, lighten, newColor, parse, toHSLA, toRGBA, } from './color-bits/index.js';
7
+ // Magenta sentinel for invalid input. User-written jexl color callbacks can
8
+ // legitimately return undefined (e.g. when a feature lacks the field they
9
+ // reference); crashing the worker on `undefined.trim()` was the failure mode.
10
+ // Returning magenta makes the bad slot visually obvious without breaking the
11
+ // rest of the render.
12
+ const INVALID_COLOR = newColor(255, 0, 255, 255);
13
+ // UCSC's convention is that a color of "0" means "no color specified", and plain
14
+ // BED12 files fill the column with that placeholder (often spelled as the
15
+ // all-zero triple) rather than omitting it — every itemRgb in our own
16
+ // volvox-bed12 fixture is "0,0,0". Honoring those literally would paint an
17
+ // ordinary BED12 track solid black, so read them as absent. A file that really
18
+ // wants black can say so with an explicit `color` slot.
19
+ const BED_TRIPLE_UNSET = /^0(,0,0)?$/;
20
+ /**
21
+ * One raw attribute value as a usable BED color, or undefined when it isn't
22
+ * one. Deliberately strict: this feeds an *automatic* coloring path, so a value
23
+ * is only claimed when it is unambiguously an in-range BED triple. Anything
24
+ * else — a hex string, a `reserved` column holding something that isn't a color
25
+ * at all — reads as absent and leaves the configured default alone, rather than
26
+ * rendering as the magenta invalid-color sentinel. Takes the raw value so it
27
+ * stays dependency-free and directly testable.
28
+ */
29
+ export function featureItemRgb(raw) {
30
+ const triple = typeof raw === 'string' ? bedTriple(raw) : undefined;
31
+ return triple !== undefined && !BED_TRIPLE_UNSET.test(triple)
32
+ ? triple
33
+ : undefined;
34
+ }
35
+ // The names the BED color column goes by, most specific first.
36
+ //
37
+ // - `itemRgb` — the BED spec's name. What the parser emits for a full BED12.
38
+ // - `reserved` — what UCSC's canonical autoSql calls it ("uint reserved; Used
39
+ // as itemRgb as of 2004-11-22"). bigBed/bigGenePred embed that autoSql and
40
+ // BigBedAdapter takes its field names from it, so bigBed features carry this.
41
+ // - `field8` — the parser only applies the *named* BED schema at exactly 12
42
+ // columns; a BED9/10/11 falls back to positional auto-naming, so the color
43
+ // lands in `field8` (column index 8, which the spec fixes as itemRgb). That
44
+ // makes plain BED9 — the classic "I just want colored features" file — the
45
+ // case this whole thing exists for. Reading the positional name is safe
46
+ // *because* featureItemRgb is strict: a 9th column holding something that
47
+ // isn't an in-range triple is simply not claimed.
48
+ //
49
+ // Nothing is renamed on the feature, deliberately: a config already reading
50
+ // `jexl:get(feature,'field8')` (the workaround this issue's users were told to
51
+ // write) keeps working, and can now just be deleted.
52
+ const BED_COLOR_FIELDS = ['itemRgb', 'reserved', 'field8'];
53
+ /**
54
+ * The BED color a feature declares for itself, under either column name, or
55
+ * undefined if it declares none.
56
+ */
57
+ export function featureBedColor(feature) {
58
+ let found;
59
+ for (const field of BED_COLOR_FIELDS) {
60
+ found ??= featureItemRgb(feature.get(field));
61
+ }
62
+ return found;
63
+ }
64
+ export function parseCssColor(color) {
65
+ if (typeof color !== 'string' || color.length === 0) {
66
+ return INVALID_COLOR;
67
+ }
68
+ return parseCssColorOr(color, INVALID_COLOR);
69
+ }
70
+ export function cssColorToNormalizedRgb(color) {
71
+ const c = parseCssColor(color);
72
+ return [getRed(c) / 255, getGreen(c) / 255, getBlue(c) / 255];
73
+ }
74
+ export function cssColorToRgb(color) {
75
+ const c = parseCssColor(color);
76
+ return [getRed(c), getGreen(c), getBlue(c)];
77
+ }
78
+ export function cssColorToRgba(color) {
79
+ const c = parseCssColor(color);
80
+ return [getRed(c), getGreen(c), getBlue(c), getAlpha(c)];
81
+ }
82
+ // Pack 0..255 RGBA channel bytes into an ABGR u32 (R at byte 0, A at byte 3).
83
+ // >>> 0 keeps the result an unsigned 32-bit — bit 31 (alpha's top bit) would
84
+ // otherwise make opaque colors negative in JS.
85
+ export function packAbgr(r, g, b, a) {
86
+ return ((a << 24) | (b << 16) | (g << 8) | r) >>> 0;
87
+ }
88
+ // A packer resolves the same few strings once per primitive, so the parse is
89
+ // cached by string. Capped, because BED itemRgb triples are unbounded.
90
+ const ABGR_CACHE_LIMIT = 4096;
91
+ const abgrByCss = new Map();
92
+ export function cssColorToABGR(color) {
93
+ const cached = abgrByCss.get(color);
94
+ if (cached !== undefined) {
95
+ return cached;
96
+ }
97
+ const c = parseCssColor(color);
98
+ const packed = packAbgr(getRed(c), getGreen(c), getBlue(c), getAlpha(c));
99
+ if (abgrByCss.size >= ABGR_CACHE_LIMIT) {
100
+ abgrByCss.clear();
101
+ }
102
+ abgrByCss.set(color, packed);
103
+ return packed;
104
+ }
105
+ // Replace the alpha byte of an ABGR-packed u32, keeping its RGB. RGB already
106
+ // occupies the low 24 bits (b<<16 | g<<8 | r), so this is a mask + or — no
107
+ // per-channel unpack/repack. >>> 0 keeps the result unsigned (see packAbgr).
108
+ export function withAbgrAlpha(c, a) {
109
+ return ((c & 0x00ffffff) | (a << 24)) >>> 0;
110
+ }
111
+ // Pack a 0..1 normalized RGB triple into an ABGR u32 (opaque alpha). Inverse
112
+ // of cssColorToNormalizedRgb at the GPU write boundary — the shader side
113
+ // unpacks with unpackRGBA() (see packages/render-core/src/shaders/colorPack.slang).
114
+ export function normalizedRgbToABGR(r, g, b) {
115
+ return packAbgr(Math.round(r * 255), Math.round(g * 255), Math.round(b * 255), 255);
116
+ }
117
+ // Format a 0..1 normalized RGB triple as a CSS `rgb(r,g,b)` string.
118
+ export function normalizedRgbToCss(c) {
119
+ return `rgb(${Math.round(c[0] * 255)},${Math.round(c[1] * 255)},${Math.round(c[2] * 255)})`;
120
+ }
121
+ // Format a 0..1 normalized RGB triple + alpha as a CSS `rgba(r,g,b,a)` string.
122
+ // Preferred over `ctx.globalAlpha = a; fillStyle = rgb(...)` bracketing.
123
+ export function normalizedRgbToCssRgba(c, alpha) {
124
+ return `rgba(${Math.round(c[0] * 255)},${Math.round(c[1] * 255)},${Math.round(c[2] * 255)},${alpha})`;
125
+ }
126
+ export function setAbgrFill(ctx, c) {
127
+ ctx.fillStyle = abgrToCssRgba(c);
128
+ }
129
+ // Channel accessors for the ABGR packed layout (R at byte 0, A at byte 3 —
130
+ // the layout produced by cssColorToABGR and consumed by GPU shaders that
131
+ // unpack via bit shifts from a u32 vertex attribute). Mirror of the
132
+ // color-bits getRed/Green/Blue/Alpha, which operate on the canonical
133
+ // 0xRRGGBBAA layout and therefore give wrong results if called on an ABGR
134
+ // value.
135
+ export function abgrRed(c) {
136
+ return c & 0xff;
137
+ }
138
+ export function abgrGreen(c) {
139
+ return (c >>> 8) & 0xff;
140
+ }
141
+ export function abgrBlue(c) {
142
+ return (c >>> 16) & 0xff;
143
+ }
144
+ export function abgrAlpha(c) {
145
+ return (c >>> 24) & 0xff;
146
+ }
147
+ export function cssColorToNormalizedRgba(color) {
148
+ const c = parseCssColor(color);
149
+ return [
150
+ getRed(c) / 255,
151
+ getGreen(c) / 255,
152
+ getBlue(c) / 255,
153
+ getAlpha(c) / 255,
154
+ ];
155
+ }
@@ -0,0 +1,81 @@
1
+ import type { RampStop } from '../ui/colorScale.ts';
2
+ import type { ColorSchemeName } from './colorSchemes.ts';
3
+ /** One evenly-spaced ramp stop: 8-bit red, green, blue, alpha. */
4
+ export type ColorRampStop = readonly [number, number, number, number];
5
+ /**
6
+ * #api
7
+ * The 256 viridis stops, fully opaque. Feed them to {@link buildColorRampLut}
8
+ * for the texture/fillStyle form, or to {@link sampleColorRamp} for legend
9
+ * stops.
10
+ */
11
+ export declare const VIRIDIS_STOPS: readonly ColorRampStop[];
12
+ /**
13
+ * #api
14
+ * Whether a named ramp runs dark at its low end, drawn over white: viridis
15
+ * and its siblings do, juicebox, fall, reds and blues do not.
16
+ */
17
+ export declare function darkAtLowEnd(scheme: ColorSchemeName): boolean;
18
+ /**
19
+ * #api
20
+ * The domain a continuous colour scale spans: each end `min` or `max` pins,
21
+ * else the extent's, ascending, since a span has no direction and `reverse`
22
+ * is the ramp's. An open end stops at a pinned one rather than crossing it,
23
+ * and an extent holding no value (`[Infinity, -Infinity]`) spans [0, 1].
24
+ */
25
+ export declare function rampDomain(min: number | undefined, max: number | undefined, extent: readonly [number, number]): [number, number];
26
+ /**
27
+ * #api
28
+ * The stops a continuous colour scale samples: `range`'s CSS colours where it
29
+ * lists any, else the named `scheme`, viridis while that is unset, turned
30
+ * round under `reverse`.
31
+ */
32
+ export declare function colorRampStops({ range, scheme, reverse, }: RampDeclaration): readonly ColorRampStop[];
33
+ /**
34
+ * #api
35
+ * The color at `t` in `[0, 1]` across a list of EVENLY SPACED stops, linearly
36
+ * interpolated per channel. `t` is clamped, so the ends are the end stops
37
+ * rather than an extrapolation past them, and a one-stop ramp is that stop
38
+ * everywhere.
39
+ */
40
+ export declare function sampleColorRamp(stops: readonly ColorRampStop[], t: number): ColorRampStop;
41
+ /**
42
+ * #api
43
+ * An RGBA lookup table over {@link sampleColorRamp}, laid out as the Nx1
44
+ * texture both GPU backends upload and the Canvas2D twins index — entry `i` is
45
+ * the color at `t = i / (N - 1)`. N comes off the shader that samples it, so
46
+ * the table and `rampColor`'s texel mapping cannot disagree.
47
+ *
48
+ * The table is always straight. A diverging ramp whose middle belongs at a
49
+ * value off the centre of the domain reads it through `rampMidT`, the shader's
50
+ * rule and its generated twin, so the middle follows a moving domain without a
51
+ * new table.
52
+ */
53
+ export declare function buildColorRampLut(stops: readonly ColorRampStop[]): Uint8Array<ArrayBuffer>;
54
+ /**
55
+ * #api
56
+ * A continuous colour scale's ramp as a config declares it.
57
+ */
58
+ export interface RampDeclaration {
59
+ range?: readonly string[];
60
+ scheme?: ColorSchemeName;
61
+ reverse?: boolean;
62
+ }
63
+ /**
64
+ * #api
65
+ * The {@link buildColorRampLut} table a ramp declaration asks for, the same
66
+ * `Uint8Array` for the same declaration, since a GPU backend re-uploads its
67
+ * ramp texture when the identity changes and a render state is rebuilt far
68
+ * more often than its ramp.
69
+ */
70
+ export declare function rampLutOf(ramp: RampDeclaration): Uint8Array;
71
+ /**
72
+ * #api
73
+ * `n` evenly spaced legend stops read straight out of a
74
+ * {@link buildColorRampLut} byte table — the same 256×1 RGBA array
75
+ * `uploadColorRampLut` hands the GPU and the Canvas2D fillStyle LUTs index —
76
+ * as the stops of a `RampScale`. It holds one claim by construction: the
77
+ * swatch at bar fraction `t` is byte-identical to the ramp entry both backends
78
+ * read at `t`, through the ramp's middle stop at `midNorm` (`rampMidT`). Alpha rides `opacity` (the juicebox fade), never baked into
79
+ * the color string.
80
+ */
81
+ export declare function stopsFromRampLut(lut: Uint8Array, n: number, midNorm?: number): RampStop[];
@@ -0,0 +1,244 @@
1
+ import { COLOR_RAMP_LUT_ENTRIES } from '@jbrowse/render-core/colorRampLut';
2
+ import { rampMidT } from '@jbrowse/render-core/shaders/colorRampLut';
3
+ import { cssColorToRgba } from './colorBits.js';
4
+ import { DEFAULT_COLOR_SCHEME } from './colorSchemes.js';
5
+ const VIRIDIS_HEX_SPEC = '44015444025645045745055946075a46085c460a5d460b5e470d60470e6147106347116447136548146748166848176948186a481a6c481b6d481c6e481d6f481f70482071482173482374482475482576482677482878482979472a7a472c7a472d7b472e7c472f7d46307e46327e46337f463480453581453781453882443983443a83443b84433d84433e85423f854240864241864142874144874045884046883f47883f48893e49893e4a893e4c8a3d4d8a3d4e8a3c4f8a3c508b3b518b3b528b3a538b3a548c39558c39568c38588c38598c375a8c375b8d365c8d365d8d355e8d355f8d34608d34618d33628d33638d32648e32658e31668e31678e31688e30698e306a8e2f6b8e2f6c8e2e6d8e2e6e8e2e6f8e2d708e2d718e2c718e2c728e2c738e2b748e2b758e2a768e2a778e2a788e29798e297a8e297b8e287c8e287d8e277e8e277f8e27808e26818e26828e26828e25838e25848e25858e24868e24878e23888e23898e238a8d228b8d228c8d228d8d218e8d218f8d21908d21918c20928c20928c20938c1f948c1f958b1f968b1f978b1f988b1f998a1f9a8a1e9b8a1e9c891e9d891f9e891f9f881fa0881fa1881fa1871fa28720a38620a48621a58521a68522a78522a88423a98324aa8325ab8225ac8226ad8127ad8128ae8029af7f2ab07f2cb17e2db27d2eb37c2fb47c31b57b32b67a34b67935b77937b87838b9773aba763bbb753dbc743fbc7340bd7242be7144bf7046c06f48c16e4ac16d4cc26c4ec36b50c46a52c56954c56856c66758c7655ac8645cc8635ec96260ca6063cb5f65cb5e67cc5c69cd5b6ccd5a6ece5870cf5773d05675d05477d1537ad1517cd2507fd34e81d34d84d44b86d54989d5488bd6468ed64590d74393d74195d84098d83e9bd93c9dd93ba0da39a2da37a5db36a8db34aadc32addc30b0dd2fb2dd2db5de2bb8de29bade28bddf26c0df25c2df23c5e021c8e020cae11fcde11dd0e11cd2e21bd5e21ad8e219dae319dde318dfe318e2e418e5e419e7e419eae51aece51befe51cf1e51df4e61ef6e620f8e621fbe723fde725';
6
+ function stopsFromHex(spec) {
7
+ const out = [];
8
+ for (let i = 0; i < spec.length; i += 6) {
9
+ out.push([
10
+ Number.parseInt(spec.slice(i, i + 2), 16),
11
+ Number.parseInt(spec.slice(i + 2, i + 4), 16),
12
+ Number.parseInt(spec.slice(i + 4, i + 6), 16),
13
+ 255,
14
+ ]);
15
+ }
16
+ return out;
17
+ }
18
+ /**
19
+ * #api
20
+ * The 256 viridis stops, fully opaque. Feed them to {@link buildColorRampLut}
21
+ * for the texture/fillStyle form, or to {@link sampleColorRamp} for legend
22
+ * stops.
23
+ */
24
+ export const VIRIDIS_STOPS = stopsFromHex(VIRIDIS_HEX_SPEC);
25
+ const MAGMA_HEX_SPEC = '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';
26
+ const INFERNO_HEX_SPEC = '00000401000501010601010802010a02020c02020e03021004031204031405041706041907051b08051d09061f0a07220b07240c08260d08290e092b10092d110a30120a32140b34150b37160b39180c3c190c3e1b0c411c0c431e0c451f0c48210c4a230c4c240c4f260c51280b53290b552b0b572d0b592f0a5b310a5c320a5e340a5f3609613809623909633b09643d09653e0966400a67420a68440a68450a69470b6a490b6a4a0c6b4c0c6b4d0d6c4f0d6c510e6c520e6d540f6d550f6d57106e59106e5a116e5c126e5d126e5f136e61136e62146e64156e65156e67166e69166e6a176e6c186e6d186e6f196e71196e721a6e741a6e751b6e771c6d781c6d7a1d6d7c1d6d7d1e6d7f1e6c801f6c82206c84206b85216b87216b88226a8a226a8c23698d23698f24699025689225689326679526679727669827669a28659b29649d29649f2a63a02a63a22b62a32c61a52c60a62d60a82e5fa92e5eab2f5ead305dae305cb0315bb1325ab3325ab43359b63458b73557b93556ba3655bc3754bd3853bf3952c03a51c13a50c33b4fc43c4ec63d4dc73e4cc83f4bca404acb4149cc4248ce4347cf4446d04545d24644d34743d44842d54a41d74b3fd84c3ed94d3dda4e3cdb503bdd513ade5238df5337e05536e15635e25734e35933e45a31e55c30e65d2fe75e2ee8602de9612bea632aeb6429eb6628ec6726ed6925ee6a24ef6c23ef6e21f06f20f1711ff1731df2741cf3761bf37819f47918f57b17f57d15f67e14f68013f78212f78410f8850ff8870ef8890cf98b0bf98c0af98e09fa9008fa9207fa9407fb9606fb9706fb9906fb9b06fb9d07fc9f07fca108fca309fca50afca60cfca80dfcaa0ffcac11fcae12fcb014fcb216fcb418fbb61afbb81dfbba1ffbbc21fbbe23fac026fac228fac42afac62df9c72ff9c932f9cb35f8cd37f8cf3af7d13df7d340f6d543f6d746f5d949f5db4cf4dd4ff4df53f4e156f3e35af3e55df2e661f2e865f2ea69f1ec6df1ed71f1ef75f1f179f2f27df2f482f3f586f3f68af4f88ef5f992f6fa96f8fb9af9fc9dfafda1fcffa4';
27
+ const CIVIDIS_HEX_SPEC = '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';
28
+ const FALL_STOPS = [
29
+ [255, 255, 255, 255],
30
+ [255, 255, 204, 255],
31
+ [255, 237, 160, 255],
32
+ [254, 217, 118, 255],
33
+ [254, 178, 76, 255],
34
+ [253, 141, 60, 255],
35
+ [252, 78, 42, 255],
36
+ [227, 26, 28, 255],
37
+ [189, 0, 38, 255],
38
+ [128, 0, 38, 255],
39
+ [0, 0, 0, 255],
40
+ ];
41
+ const JUICEBOX_STOPS = [
42
+ [255, 0, 0, 0],
43
+ [255, 0, 0, 255],
44
+ ];
45
+ const REDS_STOPS = [
46
+ [255, 245, 240, 255],
47
+ [254, 224, 210, 255],
48
+ [252, 187, 161, 255],
49
+ [252, 146, 114, 255],
50
+ [251, 106, 74, 255],
51
+ [239, 59, 44, 255],
52
+ [203, 24, 29, 255],
53
+ [165, 15, 21, 255],
54
+ [103, 0, 13, 255],
55
+ ];
56
+ const BLUES_STOPS = [
57
+ [247, 251, 255, 255],
58
+ [222, 235, 247, 255],
59
+ [198, 219, 239, 255],
60
+ [158, 202, 225, 255],
61
+ [107, 174, 214, 255],
62
+ [66, 146, 198, 255],
63
+ [33, 113, 181, 255],
64
+ [8, 81, 156, 255],
65
+ [8, 48, 107, 255],
66
+ ];
67
+ const REDBLUE_STOPS = [
68
+ [103, 0, 31, 255],
69
+ [178, 24, 43, 255],
70
+ [214, 96, 77, 255],
71
+ [244, 165, 130, 255],
72
+ [253, 219, 199, 255],
73
+ [247, 247, 247, 255],
74
+ [209, 229, 240, 255],
75
+ [146, 197, 222, 255],
76
+ [67, 147, 195, 255],
77
+ [33, 102, 172, 255],
78
+ [5, 48, 97, 255],
79
+ ];
80
+ const PURPLEORANGE_STOPS = [
81
+ [45, 0, 75, 255],
82
+ [84, 39, 136, 255],
83
+ [128, 115, 172, 255],
84
+ [178, 171, 210, 255],
85
+ [216, 218, 235, 255],
86
+ [247, 247, 247, 255],
87
+ [254, 224, 182, 255],
88
+ [253, 184, 99, 255],
89
+ [224, 130, 20, 255],
90
+ [179, 88, 6, 255],
91
+ [127, 59, 8, 255],
92
+ ];
93
+ const SCHEME_STOPS = {
94
+ viridis: VIRIDIS_STOPS,
95
+ juicebox: JUICEBOX_STOPS,
96
+ fall: FALL_STOPS,
97
+ reds: REDS_STOPS,
98
+ blues: BLUES_STOPS,
99
+ magma: stopsFromHex(MAGMA_HEX_SPEC),
100
+ inferno: stopsFromHex(INFERNO_HEX_SPEC),
101
+ cividis: stopsFromHex(CIVIDIS_HEX_SPEC),
102
+ redblue: REDBLUE_STOPS,
103
+ purpleorange: PURPLEORANGE_STOPS,
104
+ };
105
+ function luminanceOverWhite([r, g, b, a]) {
106
+ const over = (c) => 255 + (c - 255) * (a / 255);
107
+ return 0.2126 * over(r) + 0.7152 * over(g) + 0.0722 * over(b);
108
+ }
109
+ /**
110
+ * #api
111
+ * Whether a named ramp runs dark at its low end, drawn over white: viridis
112
+ * and its siblings do, juicebox, fall, reds and blues do not.
113
+ */
114
+ export function darkAtLowEnd(scheme) {
115
+ const stops = SCHEME_STOPS[scheme];
116
+ return luminanceOverWhite(stops[0]) < luminanceOverWhite(stops.at(-1));
117
+ }
118
+ const EMPTY_EXTENT_DOMAIN = [0, 1];
119
+ /**
120
+ * #api
121
+ * The domain a continuous colour scale spans: each end `min` or `max` pins,
122
+ * else the extent's, ascending, since a span has no direction and `reverse`
123
+ * is the ramp's. An open end stops at a pinned one rather than crossing it,
124
+ * and an extent holding no value (`[Infinity, -Infinity]`) spans [0, 1].
125
+ */
126
+ export function rampDomain(min, max, extent) {
127
+ const [lo, hi] = extent[0] <= extent[1] ? extent : EMPTY_EXTENT_DOMAIN;
128
+ if (min !== undefined && max !== undefined) {
129
+ return min <= max ? [min, max] : [max, min];
130
+ }
131
+ if (min !== undefined) {
132
+ return [min, Math.max(min, hi)];
133
+ }
134
+ if (max !== undefined) {
135
+ return [Math.min(lo, max), max];
136
+ }
137
+ return [lo, hi];
138
+ }
139
+ /**
140
+ * #api
141
+ * The stops a continuous colour scale samples: `range`'s CSS colours where it
142
+ * lists any, else the named `scheme`, viridis while that is unset, turned
143
+ * round under `reverse`.
144
+ */
145
+ export function colorRampStops({ range, scheme, reverse, }) {
146
+ const stops = range?.length
147
+ ? range.map(c => cssColorToRgba(c))
148
+ : SCHEME_STOPS[scheme ?? DEFAULT_COLOR_SCHEME];
149
+ return reverse ? stops.toReversed() : stops;
150
+ }
151
+ function lerp8(a, b, t) {
152
+ return Math.round(a * (1 - t) + b * t);
153
+ }
154
+ /**
155
+ * #api
156
+ * The color at `t` in `[0, 1]` across a list of EVENLY SPACED stops, linearly
157
+ * interpolated per channel. `t` is clamped, so the ends are the end stops
158
+ * rather than an extrapolation past them, and a one-stop ramp is that stop
159
+ * everywhere.
160
+ */
161
+ export function sampleColorRamp(stops, t) {
162
+ const position = Math.max(0, Math.min(1, t)) * (stops.length - 1);
163
+ const lower = Math.floor(position);
164
+ const lo = stops[lower];
165
+ const hi = stops[Math.min(lower + 1, stops.length - 1)];
166
+ const frac = position - lower;
167
+ return [
168
+ lerp8(lo[0], hi[0], frac),
169
+ lerp8(lo[1], hi[1], frac),
170
+ lerp8(lo[2], hi[2], frac),
171
+ lerp8(lo[3], hi[3], frac),
172
+ ];
173
+ }
174
+ /**
175
+ * #api
176
+ * An RGBA lookup table over {@link sampleColorRamp}, laid out as the Nx1
177
+ * texture both GPU backends upload and the Canvas2D twins index — entry `i` is
178
+ * the color at `t = i / (N - 1)`. N comes off the shader that samples it, so
179
+ * the table and `rampColor`'s texel mapping cannot disagree.
180
+ *
181
+ * The table is always straight. A diverging ramp whose middle belongs at a
182
+ * value off the centre of the domain reads it through `rampMidT`, the shader's
183
+ * rule and its generated twin, so the middle follows a moving domain without a
184
+ * new table.
185
+ */
186
+ export function buildColorRampLut(stops) {
187
+ const last = COLOR_RAMP_LUT_ENTRIES - 1;
188
+ const data = new Uint8Array(COLOR_RAMP_LUT_ENTRIES * 4);
189
+ for (let i = 0; i < COLOR_RAMP_LUT_ENTRIES; i++) {
190
+ const [r, g, b, a] = sampleColorRamp(stops, i / last);
191
+ data[i * 4] = r;
192
+ data[i * 4 + 1] = g;
193
+ data[i * 4 + 2] = b;
194
+ data[i * 4 + 3] = a;
195
+ }
196
+ return data;
197
+ }
198
+ const MAX_RAMP_LUTS = 32;
199
+ const luts = new Map();
200
+ /**
201
+ * #api
202
+ * The {@link buildColorRampLut} table a ramp declaration asks for, the same
203
+ * `Uint8Array` for the same declaration, since a GPU backend re-uploads its
204
+ * ramp texture when the identity changes and a render state is rebuilt far
205
+ * more often than its ramp.
206
+ */
207
+ export function rampLutOf(ramp) {
208
+ const key = [ramp.scheme ?? '', ramp.range?.join(' ') ?? '', !!ramp.reverse]
209
+ .map(String)
210
+ .join('|');
211
+ let lut = luts.get(key);
212
+ if (!lut) {
213
+ if (luts.size >= MAX_RAMP_LUTS) {
214
+ luts.delete(luts.keys().next().value);
215
+ }
216
+ lut = buildColorRampLut(colorRampStops(ramp));
217
+ luts.set(key, lut);
218
+ }
219
+ return lut;
220
+ }
221
+ /**
222
+ * #api
223
+ * `n` evenly spaced legend stops read straight out of a
224
+ * {@link buildColorRampLut} byte table — the same 256×1 RGBA array
225
+ * `uploadColorRampLut` hands the GPU and the Canvas2D fillStyle LUTs index —
226
+ * as the stops of a `RampScale`. It holds one claim by construction: the
227
+ * swatch at bar fraction `t` is byte-identical to the ramp entry both backends
228
+ * read at `t`, through the ramp's middle stop at `midNorm` (`rampMidT`). Alpha rides `opacity` (the juicebox fade), never baked into
229
+ * the color string.
230
+ */
231
+ export function stopsFromRampLut(lut, n, midNorm = 0.5) {
232
+ const lastEntry = lut.length / 4 - 1;
233
+ const out = [];
234
+ for (let i = 0; i < n; i++) {
235
+ const t = n === 1 ? 0 : i / (n - 1);
236
+ const o = Math.round(rampMidT(t, midNorm) * lastEntry) * 4;
237
+ out.push({
238
+ offset: t,
239
+ color: `rgb(${lut[o]},${lut[o + 1]},${lut[o + 2]})`,
240
+ opacity: lut[o + 3] / 255,
241
+ });
242
+ }
243
+ return out;
244
+ }