@jbrowse/core 4.3.0 → 5.0.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1265) hide show
  1. package/README.md +1994 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
  37. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
  38. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  39. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
  40. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
  41. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  97. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  98. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  99. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  100. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  101. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  102. package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
  103. package/esm/BaseFeatureWidget/formatDetails.js +82 -0
  104. package/esm/BaseFeatureWidget/index.d.ts +4 -1
  105. package/esm/BaseFeatureWidget/index.js +2 -2
  106. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
  107. package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
  108. package/esm/BaseFeatureWidget/types.d.ts +15 -8
  109. package/esm/BaseFeatureWidget/util.d.ts +2 -37
  110. package/esm/BaseFeatureWidget/util.js +4 -85
  111. package/esm/CorePlugin.js +12 -7
  112. package/esm/PhasedScheduler.d.ts +4 -2
  113. package/esm/PhasedScheduler.js +18 -2
  114. package/esm/Plugin.d.ts +6 -1
  115. package/esm/Plugin.js +7 -0
  116. package/esm/PluginLoader.d.ts +55 -44
  117. package/esm/PluginLoader.js +290 -90
  118. package/esm/PluginManager.d.ts +476 -57
  119. package/esm/PluginManager.js +480 -91
  120. package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
  121. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  122. package/esm/ReExports/MuiReExports.d.ts +3 -134
  123. package/esm/ReExports/MuiReExports.js +43 -16
  124. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  125. package/esm/ReExports/MuiStylesReExports.js +55 -0
  126. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  127. package/esm/ReExports/coreModules.generated.js +528 -0
  128. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  129. package/esm/ReExports/coreWorkerModules.generated.js +488 -0
  130. package/esm/ReExports/frameworkModules.d.ts +2 -0
  131. package/esm/ReExports/frameworkModules.js +68 -0
  132. package/esm/ReExports/frameworkShared.d.ts +12 -0
  133. package/esm/ReExports/frameworkShared.js +16 -0
  134. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  135. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  136. package/esm/ReExports/lazify.d.ts +2 -2
  137. package/esm/ReExports/lazify.js +16 -3
  138. package/esm/ReExports/list.js +433 -160
  139. package/esm/ReExports/modules.d.ts +1 -1
  140. package/esm/ReExports/modules.js +10 -146
  141. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  142. package/esm/ReExports/muiComponentNames.js +130 -0
  143. package/esm/ReExports/registry.d.ts +3 -0
  144. package/esm/ReExports/registry.js +46 -0
  145. package/esm/ReExports/uiStub.d.ts +3 -0
  146. package/esm/ReExports/uiStub.js +33 -0
  147. package/esm/ReExports/workerModules.d.ts +2 -0
  148. package/esm/ReExports/workerModules.js +11 -0
  149. package/esm/TextSearch/BaseResults.d.ts +20 -21
  150. package/esm/TextSearch/BaseResults.js +8 -33
  151. package/esm/TextSearch/TextSearchManager.d.ts +30 -36
  152. package/esm/TextSearch/TextSearchManager.js +138 -44
  153. package/esm/TextSearch/places.d.ts +12 -0
  154. package/esm/TextSearch/places.js +94 -0
  155. package/esm/assemblyManager/assembly.d.ts +310 -35
  156. package/esm/assemblyManager/assembly.js +554 -263
  157. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  158. package/esm/assemblyManager/assemblyAdapters.js +24 -0
  159. package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
  160. package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
  161. package/esm/assemblyManager/assemblyManager.d.ts +586 -323
  162. package/esm/assemblyManager/assemblyManager.js +352 -51
  163. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
  164. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
  165. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  166. package/esm/assemblyManager/geneticCodes.js +44 -0
  167. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
  168. package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
  169. package/esm/assemblyManager/index.d.ts +1 -1
  170. package/esm/assemblyManager/index.js +2 -2
  171. package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
  172. package/esm/assemblyManager/indexAssemblyNames.js +22 -0
  173. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  174. package/esm/assemblyManager/loadRefNameMap.js +75 -0
  175. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  176. package/esm/assemblyManager/refNameColors.js +32 -0
  177. package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
  178. package/esm/assemblyManager/refNameMapKey.js +12 -0
  179. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  180. package/esm/assemblyManager/refNameMaps.js +87 -0
  181. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  182. package/esm/assemblyManager/refNameMismatch.js +66 -0
  183. package/esm/checkPlugins.d.ts +13 -0
  184. package/esm/checkPlugins.js +98 -0
  185. package/esm/configuration/bamIndexFields.d.ts +49 -0
  186. package/esm/configuration/bamIndexFields.js +41 -0
  187. package/esm/configuration/configurationSchema.d.ts +194 -29
  188. package/esm/configuration/configurationSchema.js +439 -145
  189. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  190. package/esm/configuration/configurationSchemaUnion.js +56 -0
  191. package/esm/configuration/configurationSlot.d.ts +373 -30
  192. package/esm/configuration/configurationSlot.js +231 -224
  193. package/esm/configuration/fillLocations.d.ts +14 -0
  194. package/esm/configuration/fillLocations.js +14 -0
  195. package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
  196. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  197. package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
  198. package/esm/configuration/formatDetailsConfigSchema.js +87 -0
  199. package/esm/configuration/fullConfSnapshot.d.ts +13 -0
  200. package/esm/configuration/fullConfSnapshot.js +44 -0
  201. package/esm/configuration/getConf.d.ts +92 -0
  202. package/esm/configuration/getConf.js +141 -0
  203. package/esm/configuration/index.d.ts +32 -3
  204. package/esm/configuration/index.js +27 -2
  205. package/esm/configuration/indexType.d.ts +26 -0
  206. package/esm/configuration/indexType.js +38 -0
  207. package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
  208. package/esm/configuration/mergeFormatCallbacks.js +27 -0
  209. package/esm/configuration/readConfObject.d.ts +34 -0
  210. package/esm/configuration/readConfObject.js +118 -0
  211. package/esm/configuration/requirements.d.ts +37 -0
  212. package/esm/configuration/requirements.js +88 -0
  213. package/esm/configuration/schemaRegistry.d.ts +52 -0
  214. package/esm/configuration/schemaRegistry.js +48 -0
  215. package/esm/configuration/schemaTypes.d.ts +39 -0
  216. package/esm/configuration/schemaTypes.js +105 -0
  217. package/esm/configuration/slotFacade.d.ts +65 -0
  218. package/esm/configuration/slotFacade.js +110 -0
  219. package/esm/configuration/slotValueUtils.d.ts +17 -0
  220. package/esm/configuration/slotValueUtils.js +25 -0
  221. package/esm/configuration/snapshotPreprocess.d.ts +43 -0
  222. package/esm/configuration/snapshotPreprocess.js +161 -0
  223. package/esm/configuration/tabixIndexFields.d.ts +70 -0
  224. package/esm/configuration/tabixIndexFields.js +62 -0
  225. package/esm/configuration/tabixShorthand.d.ts +51 -0
  226. package/esm/configuration/tabixShorthand.js +72 -0
  227. package/esm/configuration/types.d.ts +315 -13
  228. package/esm/configuration/uriShorthand.d.ts +9 -0
  229. package/esm/configuration/uriShorthand.js +16 -0
  230. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
  231. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
  232. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
  233. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
  234. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  235. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  236. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  237. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  238. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  239. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  240. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
  241. package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
  242. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  243. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  244. package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
  245. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  246. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
  247. package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
  248. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  249. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  250. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
  251. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  252. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  253. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  254. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  255. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  256. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
  257. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
  258. package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
  259. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  260. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  261. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  262. package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
  263. package/esm/data_adapters/dataAdapterCache.js +99 -25
  264. package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
  265. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  266. package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
  267. package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
  268. package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
  269. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  270. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  271. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  272. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  273. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  274. package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
  275. package/esm/pluggableElementTypes/DisplayType.js +30 -7
  276. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  277. package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
  278. package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
  279. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
  280. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  281. package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
  282. package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
  283. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
  284. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  285. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  286. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  287. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  288. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  289. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  290. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  291. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  292. package/esm/pluggableElementTypes/TrackType.js +1 -1
  293. package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
  294. package/esm/pluggableElementTypes/ViewType.js +40 -5
  295. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  296. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  297. package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
  298. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  299. package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
  300. package/esm/pluggableElementTypes/extendElementType.js +72 -0
  301. package/esm/pluggableElementTypes/index.d.ts +8 -7
  302. package/esm/pluggableElementTypes/index.js +24 -14
  303. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
  304. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  305. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
  306. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
  307. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
  308. package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
  309. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
  310. package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
  311. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
  312. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  313. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
  314. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
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  1028. package/esm/util/sameStrings.d.ts +16 -0
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  1030. package/esm/util/samplesTsv.d.ts +49 -0
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  1044. package/esm/util/sessionSharing.d.ts +40 -0
  1045. package/esm/util/sessionSharing.js +154 -0
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  1047. package/esm/util/sessionStorage.js +15 -0
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  1089. package/esm/util/translateTranscript.js +102 -0
  1090. package/esm/util/tss-react/cssAndCx.js +11 -66
  1091. package/esm/util/tss-react/index.d.ts +11 -2
  1092. package/esm/util/tss-react/index.js +9 -2
  1093. package/esm/util/tss-react/makeStyles.js +7 -4
  1094. package/esm/util/tss-react/mergeClasses.js +1 -0
  1095. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  1096. package/esm/util/tss-react/tools/classnames.js +3 -0
  1097. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  1098. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  1099. package/esm/util/tss-react/types.d.ts +1 -1
  1100. package/esm/util/tss-react/types.js +1 -6
  1101. package/esm/util/types/ElementId.js +1 -1
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  1103. package/esm/util/types/data.js +41 -0
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  1106. package/esm/util/types/isAny.d.ts +11 -0
  1107. package/esm/util/types/isAny.js +1 -0
  1108. package/esm/util/types/mst.d.ts +74 -47
  1109. package/esm/util/types/mst.js +31 -22
  1110. package/esm/util/types/predicate.d.ts +9 -0
  1111. package/esm/util/types/predicate.js +1 -0
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  1116. package/esm/util/types/services.d.ts +55 -0
  1117. package/esm/util/types/services.js +10 -0
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  1119. package/esm/util/unknownSnapshotKeys.d.ts +51 -0
  1120. package/esm/util/unknownSnapshotKeys.js +82 -0
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  1141. package/esm/util/useResizeDrag.d.ts +91 -0
  1142. package/esm/util/useResizeDrag.js +105 -0
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  1165. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
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  1200. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
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  1224. package/esm/ui/useEvent.d.ts +0 -1
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  1264. /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
  1265. /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
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+ // Generated by scripts/generateReExports.ts — do not edit by hand.
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+ // The @jbrowse/core half of the runtime ABI in the RPC worker: every key the main thread serves, a rendering module stubbed.
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+ // Regenerate with `pnpm autogen`.
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+ import { uiNamespace, uiStub } from './uiStub.js';
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+ import * as m0 from '../assemblyManager/index.js';
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+ import * as m1 from '../assemblyManager/assembly.js';
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+ import * as m2 from '../assemblyManager/assemblyConfigSchema.js';
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+ import * as m3 from '../BaseFeatureWidget/index.js';
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+ import * as m11 from '../checkPlugins.js';
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+ import * as m12 from '../configuration/index.js';
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+ import * as m13 from '../configuration/configurationSchema.js';
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+ import * as m14 from '../data_adapters/adapterSessionRefcount.js';
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+ import * as m15 from '../data_adapters/BaseAdapter/index.js';
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+ import * as m16 from '../data_adapters/BaseAdapter/getAdapterId.js';
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+ import * as m17 from '../data_adapters/BaseAdapter/rowSources.js';
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+ import * as m18 from '../data_adapters/BaseAdapter/stats.js';
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+ import * as m19 from '../data_adapters/BaseAdapter/types.js';
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+ import * as m20 from '../data_adapters/BaseAdapter/zoomRange.js';
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+ import * as m21 from '../data_adapters/dataAdapterCache.js';
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+ import * as m22 from '../data_adapters/getFeatureAdapter.js';
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+ import * as m23 from '../data_adapters/getSequenceSubAdapter.js';
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+ import * as m24 from '../pluggableElementTypes/index.js';
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+ import * as m25 from '../pluggableElementTypes/AdapterType.js';
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+ import * as m26 from '../pluggableElementTypes/ConnectionType.js';
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+ import * as m27 from '../pluggableElementTypes/DisplayType.js';
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+ import * as m28 from '../pluggableElementTypes/InternetAccountType.js';
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+ import * as m29 from '../pluggableElementTypes/models/index.js';
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+ import * as m30 from '../pluggableElementTypes/models/assertDisplayContract.js';
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+ import * as m31 from '../pluggableElementTypes/models/baseConnectionConfig.js';
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+ import * as m32 from '../pluggableElementTypes/models/BaseViewModel.js';
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+ import * as m33 from '../pluggableElementTypes/renderers/util/serializableFilterChain.js';
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+ import * as m34 from '../pluggableElementTypes/RpcMethodType.js';
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+ import * as m35 from '../pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js';
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+ import * as m36 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegion.js';
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+ import * as m37 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegions.js';
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+ import * as m38 from '../pluggableElementTypes/TextSearchAdapterType.js';
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+ import * as m39 from '../pluggableElementTypes/TrackType.js';
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+ import * as m40 from '../pluggableElementTypes/ViewType.js';
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+ import * as m41 from '../pluggableElementTypes/WidgetType.js';
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+ import * as m42 from '../Plugin.js';
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+ import * as m43 from '../pluginDefinitions.js';
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+ import * as m44 from '../PluginLoader.js';
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+ import * as m45 from '../PluginManager.js';
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+ import * as m46 from '../rpc/byteBudget.js';
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+ import * as m47 from '../rpc/RpcManager.js';
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+ import * as m48 from '../rpc/RpcRegistry.js';
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+ import * as m49 from '../rpc/WebWorkerRpcDriver.js';
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+ import * as m50 from '../svg/constants.js';
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+ import * as m51 from '../svg/exportViewSvg.js';
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+ import * as m52 from '../svg/saveSvgAsImage.js';
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+ import * as m54 from '../svg/SvgExport.js';
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+ import * as m55 from '../svg/svgId.js';
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+ import * as m56 from '../svg/svgReady.js';
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+ import * as m58 from '../svg/trackNames.js';
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+ import * as m60 from '../TextSearch/BaseResults.js';
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+ import * as m61 from '../TextSearch/places.js';
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+ import * as m62 from '../TextSearch/TextSearchManager.js';
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+ import * as m66 from '../ui/AppLogo.js';
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+ import * as m67 from '../ui/AppReadyMarker.js';
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+ import * as m69 from '../ui/buildExtraTrackMenuItems.js';
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+ import * as m72 from '../ui/colors.js';
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+ import * as m73 from '../ui/colorScale.js';
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+ import * as m75 from '../ui/DataGridFlexContainer.js';
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+ import * as m81 from '../ui/ErrorBoundary.js';
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+ import * as m84 from '../ui/filterMenuItems.js';
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+ import * as m85 from '../ui/gpuFallback.js';
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+ import * as m87 from '../ui/hoverBoxStyle.js';
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+ import * as m92 from '../ui/legendSpec.js';
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+ import * as m93 from '../ui/LegendSwatchGlyph.js';
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+ import * as m96 from '../ui/Logo.js';
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+ import * as m97 from '../ui/measureLegendText.js';
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+ import * as m99 from '../ui/menuItems.js';
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+ import * as m100 from '../ui/multiTrackMenuItems.js';
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+ import * as m101 from '../ui/palette.js';
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+ import * as m102 from '../ui/PaletteContext.js';
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+ import * as m103 from '../ui/persistentScrollbarStyle.js';
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+ import * as m104 from '../ui/PluggableComponents.js';
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+ import * as m108 from '../ui/ResizeHandle.js';
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+ import * as m110 from '../ui/SanitizedHTML.js';
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+ import * as m111 from '../ui/scrollZoomLabels.js';
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+ import * as m115 from '../ui/showSubMenu.js';
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+ import * as m116 from '../ui/Snackbar.js';
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+ import * as m117 from '../ui/SnackbarModel.js';
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+ import * as m119 from '../ui/styleTheme.js';
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+ import * as m120 from '../ui/SvgColorLegend.js';
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+ import * as m121 from '../ui/theme.js';
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+ import * as m122 from '../ui/useCoalescedPointer.js';
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+ import * as m123 from '../ui/useMouseTracking.js';
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+ import * as m124 from '../ui/VerticalScrollbar.js';
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+ import * as m125 from '../ui/zIndexes.js';
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+ import * as m126 from '../util/index.js';
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+ import * as m127 from '../util/aborting.js';
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+ import * as m128 from '../util/adapterMetadata.js';
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+ import * as m129 from '../util/addRelativeUris.js';
95
+ import * as m130 from '../util/aggregateFieldName.js';
96
+ import * as m131 from '../util/analytics.js';
97
+ import * as m132 from '../util/animationAllowed.js';
98
+ import * as m133 from '../util/assemblyConfigUtils.js';
99
+ import * as m134 from '../util/bandHeight.js';
100
+ import * as m135 from '../util/bandLayout.js';
101
+ import * as m136 from '../util/Base1DUtils.js';
102
+ import * as m137 from '../util/Base1DViewModel.js';
103
+ import * as m138 from '../util/bgzfWorkerPool.js';
104
+ import * as m139 from '../util/blockTypes.js';
105
+ import * as m140 from '../util/cacheBudgets.js';
106
+ import * as m141 from '../util/calculateDynamicBlocks.js';
107
+ import * as m142 from '../util/calculateStaticBlocks.js';
108
+ import * as m143 from '../util/categoricalField.js';
109
+ import * as m144 from '../util/chooseGridPitch.js';
110
+ import * as m145 from '../util/color/index.js';
111
+ import * as m146 from '../util/color/cssColorsLevel4.js';
112
+ import * as m147 from '../util/colorBits.js';
113
+ import * as m148 from '../util/colord.js';
114
+ import * as m149 from '../util/colorRamp.js';
115
+ import * as m150 from '../util/colorScale.js';
116
+ import * as m151 from '../util/colorSchemes.js';
117
+ import * as m152 from '../util/convertCodingSequenceToPeptides.js';
118
+ import * as m153 from '../util/copyText.js';
119
+ import * as m154 from '../util/createAbortRotation.js';
120
+ import * as m155 from '../util/createSvgRasterCanvas.js';
121
+ import * as m156 from '../util/cssColorParse.js';
122
+ import * as m157 from '../util/deepEqual.js';
123
+ import * as m158 from '../util/deepMerge.js';
124
+ import * as m159 from '../util/diagonalizeRegions.js';
125
+ import * as m160 from '../util/eventPoint.js';
126
+ import * as m161 from '../util/expandLooseSearchIndex.js';
127
+ import * as m162 from '../util/featureTable.js';
128
+ import * as m163 from '../util/featureTransforms.js';
129
+ import * as m164 from '../util/fetchContext.js';
130
+ import * as m165 from '../util/fetchHub.js';
131
+ import * as m166 from '../util/fetchPhases.js';
132
+ import * as m167 from '../util/fieldReader.js';
133
+ import * as m168 from '../util/fileHandleStore.js';
134
+ import * as m169 from '../util/FileSaver/index.js';
135
+ import * as m170 from '../util/flatbush/index.js';
136
+ import * as m171 from '../util/formatFastaStrings.js';
137
+ import * as m172 from '../util/frameCoalescer.js';
138
+ import * as m173 from '../util/freezeDeep.js';
139
+ import * as m174 from '../util/geneticCodes.js';
140
+ import * as m175 from '../util/getRelativeX.js';
141
+ import * as m176 from '../util/groupKeys.js';
142
+ import * as m177 from '../util/highlights.js';
143
+ import * as m178 from '../util/hooks.js';
144
+ import * as m179 from '../util/htmlText.js';
145
+ import * as m180 from '../util/indexCandidates.js';
146
+ import * as m181 from '../util/installClearHoverOnSurfaceMove.js';
147
+ import * as m182 from '../util/installFetch.js';
148
+ import * as m183 from '../util/installInitAutorun.js';
149
+ import * as m184 from '../util/installPrerequisiteFetch.js';
150
+ import * as m185 from '../util/io/index.js';
151
+ import * as m186 from '../util/io/RemoteFileWithRangeCache.js';
152
+ import * as m187 from '../util/isDataCurrent.js';
153
+ import * as m188 from '../util/isTextEntryFocused.js';
154
+ import * as m189 from '../util/jexl.js';
155
+ import * as m190 from '../util/jexlFilters.js';
156
+ import * as m191 from '../util/jexlStrings.js';
157
+ import * as m192 from '../util/layouts/index.js';
158
+ import * as m193 from '../util/layouts/GranularRectLayout.js';
159
+ import * as m194 from '../util/layouts/placeRect.js';
160
+ import * as m195 from '../util/lazyAfterAttach.js';
161
+ import * as m196 from '../util/lazyWithPreload.js';
162
+ import * as m197 from '../util/leadingEdgeAutorun.js';
163
+ import * as m198 from '../util/legendCandidates.js';
164
+ import * as m199 from '../util/librpc.js';
165
+ import * as m200 from '../util/localStorage.js';
166
+ import * as m201 from '../util/makeAssembly.js';
167
+ import * as m202 from '../util/markEncoding.js';
168
+ import * as m203 from '../util/measureText.js';
169
+ import * as m204 from '../util/mst-reflection.js';
170
+ import * as m205 from '../util/mstUtils.js';
171
+ import * as m206 from '../util/nanoid.js';
172
+ import * as m207 from '../util/numericUtils.js';
173
+ import * as m208 from '../util/offscreenCanvasPonyfill.js';
174
+ import * as m209 from '../util/openViews.js';
175
+ import * as m210 from '../util/paintLayer.js';
176
+ import * as m211 from '../util/parseLineByLine.js';
177
+ import * as m212 from '../util/preloadComponent.js';
178
+ import * as m213 from '../util/progress.js';
179
+ import * as m214 from '../util/quantileExtent.js';
180
+ import * as m215 from '../util/range.js';
181
+ import * as m217 from '../util/resolveRowHeight.js';
182
+ import * as m218 from '../util/rowStackGeometry.js';
183
+ import * as m219 from '../util/rxjs.js';
184
+ import * as m220 from '../util/sameStrings.js';
185
+ import * as m221 from '../util/samplesTsv.js';
186
+ import * as m222 from '../util/selectEncodedFeature.js';
187
+ import * as m223 from '../util/setStackTraceLimit.js';
188
+ import * as m224 from '../util/shapeNameList.js';
189
+ import * as m225 from '../util/shapeNames.js';
190
+ import * as m226 from '../util/simpleFeature.js';
191
+ import * as m227 from '../util/starFusion.js';
192
+ import * as m228 from '../util/stats.js';
193
+ import * as m229 from '../util/svAlt.js';
194
+ import * as m230 from '../util/SvgCanvas.js';
195
+ import * as m231 from '../util/svgColorProps.js';
196
+ import * as m232 from '../util/systemColorScheme.js';
197
+ import * as m233 from '../util/tabix.js';
198
+ import * as m234 from '../util/thresholdScale.js';
199
+ import * as m235 from '../util/tickLabels.js';
200
+ import * as m236 from '../util/TimeTraveller.js';
201
+ import * as m237 from '../util/tracks.js';
202
+ import * as m238 from '../util/translateTranscript.js';
203
+ import * as m239 from '../util/tss-react/index.js';
204
+ import * as m240 from '../util/tss-react/types.js';
205
+ import * as m241 from '../util/types/index.js';
206
+ import * as m242 from '../util/types/data.js';
207
+ import * as m243 from '../util/types/mst.js';
208
+ import * as m244 from '../util/unknownSnapshotKeys.js';
209
+ import * as m245 from '../util/unzip.js';
210
+ import * as m246 from '../util/useEventCallback.js';
211
+ import * as m247 from '../util/useFetch.js';
212
+ import * as m248 from '../util/useFetchPlugins.js';
213
+ import * as m249 from '../util/useMeasure.js';
214
+ import * as m250 from '../util/usePanelVirtualScroll.js';
215
+ import * as m251 from '../util/usePanZoom.js';
216
+ import * as m252 from '../util/usePointerDrag.js';
217
+ import * as m253 from '../util/useResizeDrag.js';
218
+ import * as m254 from '../util/useRowVirtualScroll.js';
219
+ import * as m255 from '../util/viewHighlights.js';
220
+ import * as m256 from '../util/viewStatus.js';
221
+ import * as m257 from '../util/virtualRange.js';
222
+ import * as m258 from '../util/wheelZoom.js';
223
+ import * as m259 from '../util/whenViewSettled.js';
224
+ import * as m260 from '../util/withLaunchInput.js';
225
+ const libs = {
226
+ '@jbrowse/core/assemblyManager': { ...m0, __esModule: true },
227
+ '@jbrowse/core/assemblyManager/assembly': { ...m1, __esModule: true },
228
+ '@jbrowse/core/assemblyManager/assemblyConfigSchema': { ...m2, __esModule: true },
229
+ '@jbrowse/core/BaseFeatureWidget': m3,
230
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': uiNamespace(['BaseAttributes', 'BaseCard', 'BaseCoreDetails', 'FeatureDetails', 'FeatureDetailsFrame', 'FeatureWash', 'default', 'filterByValueItems', 'jexlFilterDisplay'], true),
231
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes': uiStub,
232
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard': uiStub,
233
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails': uiStub,
234
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter': uiStub,
235
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField': uiStub,
236
+ '@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog': uiStub,
237
+ '@jbrowse/core/checkPlugins': m11,
238
+ '@jbrowse/core/configuration': m12,
239
+ '@jbrowse/core/configuration/configurationSchema': m13,
240
+ '@jbrowse/core/data_adapters/adapterSessionRefcount': m14,
241
+ '@jbrowse/core/data_adapters/BaseAdapter': m15,
242
+ '@jbrowse/core/data_adapters/BaseAdapter/getAdapterId': m16,
243
+ '@jbrowse/core/data_adapters/BaseAdapter/rowSources': m17,
244
+ '@jbrowse/core/data_adapters/BaseAdapter/stats': m18,
245
+ '@jbrowse/core/data_adapters/BaseAdapter/types': m19,
246
+ '@jbrowse/core/data_adapters/BaseAdapter/zoomRange': m20,
247
+ '@jbrowse/core/data_adapters/dataAdapterCache': m21,
248
+ '@jbrowse/core/data_adapters/getFeatureAdapter': m22,
249
+ '@jbrowse/core/data_adapters/getSequenceSubAdapter': m23,
250
+ '@jbrowse/core/pluggableElementTypes': m24,
251
+ '@jbrowse/core/pluggableElementTypes/AdapterType': m25.default,
252
+ '@jbrowse/core/pluggableElementTypes/ConnectionType': m26.default,
253
+ '@jbrowse/core/pluggableElementTypes/DisplayType': m27.default,
254
+ '@jbrowse/core/pluggableElementTypes/InternetAccountType': m28.default,
255
+ '@jbrowse/core/pluggableElementTypes/models': m29,
256
+ '@jbrowse/core/pluggableElementTypes/models/assertDisplayContract': m30,
257
+ '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig': m31.default,
258
+ '@jbrowse/core/pluggableElementTypes/models/BaseViewModel': { ...m32, __esModule: true },
259
+ '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain': m33.default,
260
+ '@jbrowse/core/pluggableElementTypes/RpcMethodType': { ...m34, __esModule: true },
261
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions': m35.default,
262
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion': m36.default,
263
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegions': m37.default,
264
+ '@jbrowse/core/pluggableElementTypes/TextSearchAdapterType': m38.default,
265
+ '@jbrowse/core/pluggableElementTypes/TrackType': m39.default,
266
+ '@jbrowse/core/pluggableElementTypes/ViewType': m40.default,
267
+ '@jbrowse/core/pluggableElementTypes/WidgetType': m41.default,
268
+ '@jbrowse/core/Plugin': m42.default,
269
+ '@jbrowse/core/pluginDefinitions': m43,
270
+ '@jbrowse/core/PluginLoader': { ...m44, __esModule: true },
271
+ '@jbrowse/core/PluginManager': { ...m45, __esModule: true },
272
+ '@jbrowse/core/rpc/byteBudget': m46,
273
+ '@jbrowse/core/rpc/RpcManager': m47.default,
274
+ '@jbrowse/core/rpc/RpcRegistry': m48,
275
+ '@jbrowse/core/rpc/WebWorkerRpcDriver': m49.default,
276
+ '@jbrowse/core/svg/constants': m50,
277
+ '@jbrowse/core/svg/exportViewSvg': m51,
278
+ '@jbrowse/core/svg/saveSvgAsImage': m52,
279
+ '@jbrowse/core/svg/serializeSvg': uiNamespace(['normalizeSvgMarkup', 'serializeSvg']),
280
+ '@jbrowse/core/svg/SvgExport': m54,
281
+ '@jbrowse/core/svg/svgId': m55,
282
+ '@jbrowse/core/svg/svgReady': m56,
283
+ '@jbrowse/core/svg/SvgThemeProviders': uiNamespace(['SvgThemeProviders']),
284
+ '@jbrowse/core/svg/trackNames': m58,
285
+ '@jbrowse/core/svg/wrapSvgExport': uiNamespace(['wrapSvgExport']),
286
+ '@jbrowse/core/TextSearch/BaseResults': { ...m60, __esModule: true },
287
+ '@jbrowse/core/TextSearch/places': m61,
288
+ '@jbrowse/core/TextSearch/TextSearchManager': m62.default,
289
+ '@jbrowse/core/ui': uiNamespace(['ActionLink', 'AssemblySelector', 'BaseExportSvgDialog', 'BaseTooltip', 'CONTEXT_MENU_Z_INDEX', 'CascadingMenu', 'CascadingMenuButton', 'ConfirmDialog', 'ContextMenu', 'CopyToClipboardButton', 'Crosshairs', 'Dialog', 'EditableTypography', 'ErrorBanner', 'ErrorBar', 'ErrorMessage', 'ErrorOverlay', 'ExportSvgDialog', 'ExternalLink', 'FatalErrorDialog', 'FileDropZone', 'FileSelector', 'GpuFallbackButton', 'INLINE_MENU_ROW_WIDTH', 'InfoDialog', 'JexlFilterDialog', 'LAUNCH_LABEL', 'LEGEND_ROW_HEIGHT', 'LEGEND_SVG_GUTTER_WIDTH', 'LEGEND_SWATCH', 'LabeledCheckbox', 'LegendSwatchGlyph', 'LoadingEllipses', 'LoadingOverlay', 'LoadingProgress', 'LogoFull', 'Logomark', 'MAX_LEGEND_ITEMS', 'Menu', 'MonospaceTextField', 'NumberTextField', 'PluggableComponent', 'PluggableComponents', 'PluggableElements', 'PrerenderedCanvas', 'ProgressChip', 'RefNameAutocomplete', 'RefNameAutocompleteEndAdornment', 'ReplaceCurrentViewButton', 'ResetToDefaultButton', 'ResizeHandle', 'SanitizedHTML', 'ScrollChrome', 'ScrollEdgeShadow', 'SettingsChangesTable', 'ShareLinkField', 'SingleSlider', 'SliderTooltip', 'StatusProgressBar', 'SubmitDialog', 'SubmitForm', 'SvgColorLegend', 'TOOLTIP_Z_INDEX', 'TagTextField', 'VIEW_HEADER_HEIGHT', 'VerticalScrollbar', 'ViewLoadingScreen', 'addExtensionElement', 'adornmentReservePx', 'checkboxItem', 'colorFwdStrand', 'colorInterchrom', 'colorLongInsert', 'colorLongreadInv', 'colorPairLL', 'colorPairLR', 'colorPairLRDark', 'colorPairRL', 'colorPairRR', 'colorRevStrand', 'colorScaleIsEmpty', 'colorShortInsert', 'colorSplitReadInversion', 'colorSupplementary', 'colorUnmappedMate', 'colorUnmappedMateDark', 'createJBrowseBaseTheme', 'createJBrowseTheme', 'createJBrowseThemeFromArgs', 'defaultThemes', 'getInputWidth', 'hoverBoxStyle', 'launchTargetsMenuItem', 'legendEntries', 'legendIsReadable', 'legendSpecOf', 'legendSwatches', 'makeSizeMenu', 'makeSizeSubMenu', 'matchesTrackSelector', 'measureLegendText', 'methylated5hmC', 'methylated5mC', 'nonEmptyLegendSections', 'pushIntoSubMenu', 'pushLaunchViewMenuItem', 'radioItems', 'replaceViewAction', 'resolveSubMenu', 'sliderScale', 'staysOpenOnClick', 'tagColorPalette', 'unmethylated5mC', 'useAssemblySelection', 'useCopyToClipboard', 'useExportSvgPreference', 'useMouseState', 'useMouseTracking', 'useRecentLocations', 'wrapComponent']),
290
+ '@jbrowse/core/ui/AddCustomPluginDialog': uiStub,
291
+ '@jbrowse/core/ui/AddGenomePane': uiStub,
292
+ '@jbrowse/core/ui/AppLogo': m66.default,
293
+ '@jbrowse/core/ui/AppReadyMarker': m67.default,
294
+ '@jbrowse/core/ui/BaseTooltip': uiStub,
295
+ '@jbrowse/core/ui/buildExtraTrackMenuItems': m69,
296
+ '@jbrowse/core/ui/CascadingMenuButton': uiStub,
297
+ '@jbrowse/core/ui/ColorPicker': uiNamespace(['ColorPopover', 'default'], true),
298
+ '@jbrowse/core/ui/colors': m72,
299
+ '@jbrowse/core/ui/colorScale': m73,
300
+ '@jbrowse/core/ui/ConfirmDialog': uiStub,
301
+ '@jbrowse/core/ui/DataGridFlexContainer': m75.default,
302
+ '@jbrowse/core/ui/Dialog': uiStub,
303
+ '@jbrowse/core/ui/DraggableDialog': uiStub,
304
+ '@jbrowse/core/ui/DropDownMenu': uiStub,
305
+ '@jbrowse/core/ui/EditableTypography': uiStub,
306
+ '@jbrowse/core/ui/ErrorBar': uiStub,
307
+ '@jbrowse/core/ui/ErrorBoundary': m81,
308
+ '@jbrowse/core/ui/ErrorMessageStackTraceDialog': uiStub,
309
+ '@jbrowse/core/ui/ErrorOverlay': uiStub,
310
+ '@jbrowse/core/ui/filterMenuItems': m84,
311
+ '@jbrowse/core/ui/gpuFallback': m85,
312
+ '@jbrowse/core/ui/GpuFallbackButton': uiStub,
313
+ '@jbrowse/core/ui/hoverBoxStyle': m87,
314
+ '@jbrowse/core/ui/HoverTooltip': uiStub,
315
+ '@jbrowse/core/ui/Icons': uiNamespace(['Cable', 'DNA', 'Highlighter', 'Indexing', 'InfoIcon', 'TrackSelector']),
316
+ '@jbrowse/core/ui/InfoDialog': uiStub,
317
+ '@jbrowse/core/ui/JexlFilterDialog': uiStub,
318
+ '@jbrowse/core/ui/legendSpec': m92,
319
+ '@jbrowse/core/ui/LegendSwatchGlyph': m93,
320
+ '@jbrowse/core/ui/LoadingEllipses': uiStub,
321
+ '@jbrowse/core/ui/LoadingOverlay': uiNamespace(['default', 'useDelayedFlag'], true),
322
+ '@jbrowse/core/ui/Logo': m96,
323
+ '@jbrowse/core/ui/measureLegendText': m97,
324
+ '@jbrowse/core/ui/Menu': uiStub,
325
+ '@jbrowse/core/ui/menuItems': m99,
326
+ '@jbrowse/core/ui/multiTrackMenuItems': m100,
327
+ '@jbrowse/core/ui/palette': m101,
328
+ '@jbrowse/core/ui/PaletteContext': m102,
329
+ '@jbrowse/core/ui/persistentScrollbarStyle': m103,
330
+ '@jbrowse/core/ui/PluggableComponents': m104.default,
331
+ '@jbrowse/core/ui/PluginStoreCard': uiStub,
332
+ '@jbrowse/core/ui/PopoverPicker': uiStub,
333
+ '@jbrowse/core/ui/ProgressChip': uiStub,
334
+ '@jbrowse/core/ui/ResizeHandle': m108.default,
335
+ '@jbrowse/core/ui/ReturnToImportFormDialog': uiStub,
336
+ '@jbrowse/core/ui/SanitizedHTML': m110.default,
337
+ '@jbrowse/core/ui/scrollZoomLabels': m111,
338
+ '@jbrowse/core/ui/ScrollZoomToggle': uiStub,
339
+ '@jbrowse/core/ui/SessionJsonPanel': uiStub,
340
+ '@jbrowse/core/ui/ShareLinkField': uiStub,
341
+ '@jbrowse/core/ui/showSubMenu': m115,
342
+ '@jbrowse/core/ui/Snackbar': m116.default,
343
+ '@jbrowse/core/ui/SnackbarModel': m117.default,
344
+ '@jbrowse/core/ui/StackTraceButton': uiStub,
345
+ '@jbrowse/core/ui/styleTheme': m119,
346
+ '@jbrowse/core/ui/SvgColorLegend': { ...m120, __esModule: true },
347
+ '@jbrowse/core/ui/theme': m121,
348
+ '@jbrowse/core/ui/useCoalescedPointer': m122,
349
+ '@jbrowse/core/ui/useMouseTracking': m123,
350
+ '@jbrowse/core/ui/VerticalScrollbar': { ...m124, __esModule: true },
351
+ '@jbrowse/core/ui/zIndexes': m125,
352
+ '@jbrowse/core/util': m126,
353
+ '@jbrowse/core/util/aborting': m127,
354
+ '@jbrowse/core/util/adapterMetadata': m128,
355
+ '@jbrowse/core/util/addRelativeUris': m129,
356
+ '@jbrowse/core/util/aggregateFieldName': m130,
357
+ '@jbrowse/core/util/analytics': m131,
358
+ '@jbrowse/core/util/animationAllowed': m132,
359
+ '@jbrowse/core/util/assemblyConfigUtils': m133,
360
+ '@jbrowse/core/util/bandHeight': m134,
361
+ '@jbrowse/core/util/bandLayout': m135,
362
+ '@jbrowse/core/util/Base1DUtils': m136,
363
+ '@jbrowse/core/util/Base1DViewModel': m137.default,
364
+ '@jbrowse/core/util/bgzfWorkerPool': m138,
365
+ '@jbrowse/core/util/blockTypes': m139,
366
+ '@jbrowse/core/util/cacheBudgets': m140,
367
+ '@jbrowse/core/util/calculateDynamicBlocks': m141.default,
368
+ '@jbrowse/core/util/calculateStaticBlocks': m142.default,
369
+ '@jbrowse/core/util/categoricalField': m143,
370
+ '@jbrowse/core/util/chooseGridPitch': m144,
371
+ '@jbrowse/core/util/color': m145,
372
+ '@jbrowse/core/util/color/cssColorsLevel4': m146,
373
+ '@jbrowse/core/util/colorBits': m147,
374
+ '@jbrowse/core/util/colord': m148,
375
+ '@jbrowse/core/util/colorRamp': m149,
376
+ '@jbrowse/core/util/colorScale': m150,
377
+ '@jbrowse/core/util/colorSchemes': m151,
378
+ '@jbrowse/core/util/convertCodingSequenceToPeptides': m152,
379
+ '@jbrowse/core/util/copyText': m153,
380
+ '@jbrowse/core/util/createAbortRotation': m154,
381
+ '@jbrowse/core/util/createSvgRasterCanvas': m155,
382
+ '@jbrowse/core/util/cssColorParse': m156,
383
+ '@jbrowse/core/util/deepEqual': m157,
384
+ '@jbrowse/core/util/deepMerge': m158,
385
+ '@jbrowse/core/util/diagonalizeRegions': m159,
386
+ '@jbrowse/core/util/eventPoint': m160,
387
+ '@jbrowse/core/util/expandLooseSearchIndex': m161,
388
+ '@jbrowse/core/util/featureTable': m162,
389
+ '@jbrowse/core/util/featureTransforms': m163,
390
+ '@jbrowse/core/util/fetchContext': m164,
391
+ '@jbrowse/core/util/fetchHub': m165,
392
+ '@jbrowse/core/util/fetchPhases': m166,
393
+ '@jbrowse/core/util/fieldReader': m167,
394
+ '@jbrowse/core/util/fileHandleStore': m168,
395
+ '@jbrowse/core/util/FileSaver': m169,
396
+ '@jbrowse/core/util/flatbush': m170.default,
397
+ '@jbrowse/core/util/formatFastaStrings': m171,
398
+ '@jbrowse/core/util/frameCoalescer': m172,
399
+ '@jbrowse/core/util/freezeDeep': m173,
400
+ '@jbrowse/core/util/geneticCodes': m174,
401
+ '@jbrowse/core/util/getRelativeX': m175,
402
+ '@jbrowse/core/util/groupKeys': m176,
403
+ '@jbrowse/core/util/highlights': m177,
404
+ '@jbrowse/core/util/hooks': m178,
405
+ '@jbrowse/core/util/htmlText': m179,
406
+ '@jbrowse/core/util/indexCandidates': m180,
407
+ '@jbrowse/core/util/installClearHoverOnSurfaceMove': m181,
408
+ '@jbrowse/core/util/installFetch': m182,
409
+ '@jbrowse/core/util/installInitAutorun': m183,
410
+ '@jbrowse/core/util/installPrerequisiteFetch': m184,
411
+ '@jbrowse/core/util/io': m185,
412
+ '@jbrowse/core/util/io/RemoteFileWithRangeCache': m186,
413
+ '@jbrowse/core/util/isDataCurrent': m187,
414
+ '@jbrowse/core/util/isTextEntryFocused': m188,
415
+ '@jbrowse/core/util/jexl': m189.default,
416
+ '@jbrowse/core/util/jexlFilters': m190,
417
+ '@jbrowse/core/util/jexlStrings': m191,
418
+ '@jbrowse/core/util/layouts': m192,
419
+ '@jbrowse/core/util/layouts/GranularRectLayout': m193.default,
420
+ '@jbrowse/core/util/layouts/placeRect': m194,
421
+ '@jbrowse/core/util/lazyAfterAttach': m195,
422
+ '@jbrowse/core/util/lazyWithPreload': m196,
423
+ '@jbrowse/core/util/leadingEdgeAutorun': m197,
424
+ '@jbrowse/core/util/legendCandidates': m198,
425
+ '@jbrowse/core/util/librpc': m199,
426
+ '@jbrowse/core/util/localStorage': m200,
427
+ '@jbrowse/core/util/makeAssembly': m201,
428
+ '@jbrowse/core/util/markEncoding': m202,
429
+ '@jbrowse/core/util/measureText': m203,
430
+ '@jbrowse/core/util/mst-reflection': m204,
431
+ '@jbrowse/core/util/mstUtils': m205,
432
+ '@jbrowse/core/util/nanoid': m206,
433
+ '@jbrowse/core/util/numericUtils': m207,
434
+ '@jbrowse/core/util/offscreenCanvasPonyfill': m208,
435
+ '@jbrowse/core/util/openViews': m209,
436
+ '@jbrowse/core/util/paintLayer': m210,
437
+ '@jbrowse/core/util/parseLineByLine': m211,
438
+ '@jbrowse/core/util/preloadComponent': m212,
439
+ '@jbrowse/core/util/progress': m213,
440
+ '@jbrowse/core/util/quantileExtent': m214,
441
+ '@jbrowse/core/util/range': m215,
442
+ '@jbrowse/core/util/renderToStaticMarkup': uiNamespace(['renderToStaticMarkup']),
443
+ '@jbrowse/core/util/resolveRowHeight': m217,
444
+ '@jbrowse/core/util/rowStackGeometry': m218,
445
+ '@jbrowse/core/util/rxjs': m219,
446
+ '@jbrowse/core/util/sameStrings': m220,
447
+ '@jbrowse/core/util/samplesTsv': m221,
448
+ '@jbrowse/core/util/selectEncodedFeature': m222,
449
+ '@jbrowse/core/util/setStackTraceLimit': m223,
450
+ '@jbrowse/core/util/shapeNameList': m224,
451
+ '@jbrowse/core/util/shapeNames': m225,
452
+ '@jbrowse/core/util/simpleFeature': { ...m226, __esModule: true },
453
+ '@jbrowse/core/util/starFusion': m227,
454
+ '@jbrowse/core/util/stats': m228,
455
+ '@jbrowse/core/util/svAlt': m229,
456
+ '@jbrowse/core/util/SvgCanvas': m230,
457
+ '@jbrowse/core/util/svgColorProps': m231,
458
+ '@jbrowse/core/util/systemColorScheme': m232,
459
+ '@jbrowse/core/util/tabix': m233,
460
+ '@jbrowse/core/util/thresholdScale': m234,
461
+ '@jbrowse/core/util/tickLabels': m235,
462
+ '@jbrowse/core/util/TimeTraveller': m236.default,
463
+ '@jbrowse/core/util/tracks': m237,
464
+ '@jbrowse/core/util/translateTranscript': m238,
465
+ '@jbrowse/core/util/tss-react': m239,
466
+ '@jbrowse/core/util/tss-react/types': m240,
467
+ '@jbrowse/core/util/types': m241,
468
+ '@jbrowse/core/util/types/data': m242,
469
+ '@jbrowse/core/util/types/mst': m243,
470
+ '@jbrowse/core/util/unknownSnapshotKeys': m244,
471
+ '@jbrowse/core/util/unzip': m245,
472
+ '@jbrowse/core/util/useEventCallback': m246,
473
+ '@jbrowse/core/util/useFetch': m247,
474
+ '@jbrowse/core/util/useFetchPlugins': m248,
475
+ '@jbrowse/core/util/useMeasure': m249.default,
476
+ '@jbrowse/core/util/usePanelVirtualScroll': m250,
477
+ '@jbrowse/core/util/usePanZoom': m251,
478
+ '@jbrowse/core/util/usePointerDrag': m252,
479
+ '@jbrowse/core/util/useResizeDrag': m253,
480
+ '@jbrowse/core/util/useRowVirtualScroll': m254,
481
+ '@jbrowse/core/util/viewHighlights': m255,
482
+ '@jbrowse/core/util/viewStatus': m256,
483
+ '@jbrowse/core/util/virtualRange': m257,
484
+ '@jbrowse/core/util/wheelZoom': m258,
485
+ '@jbrowse/core/util/whenViewSettled': m259,
486
+ '@jbrowse/core/util/withLaunchInput': m260,
487
+ };
488
+ export default libs;
@@ -0,0 +1,2 @@
1
+ declare const libs: any;
2
+ export default libs;
@@ -0,0 +1,68 @@
1
+ // The framework half of the runtime plugin ABI: the singletons a plugin must
2
+ // share with the host (React, MobX, MST) and Material UI. The @jbrowse half is
3
+ // generated from the exports maps — scripts/generateReExports.ts — and
4
+ // modules.ts joins the two. The worker's copy of this half is generated from
5
+ // it (frameworkWorkerModules.generated.ts), so a key added here is served in
6
+ // both realms by the next `pnpm autogen`.
7
+ import { ThemeProvider, alpha, createTheme, useTheme } from '@mui/material';
8
+ import SvgIcon, { createSvgIcon } from '@mui/material/SvgIcon';
9
+ import * as MUIUtils from '@mui/material/utils';
10
+ import * as mxreact from 'mobx-react';
11
+ import * as ReactDom from 'react-dom';
12
+ import * as ReactDomClient from 'react-dom/client';
13
+ import { cx, keyframes, makeStyles } from '../util/tss-react/index.js';
14
+ import { DataGridEntries } from './MuiDataGridReExports.js';
15
+ import { Entries } from './MuiReExports.js';
16
+ import { MUIStyles } from './MuiStylesReExports.js';
17
+ import frameworkShared from './frameworkShared.js';
18
+ import { lazyMap } from './lazify.js';
19
+ function makeLegacyMakeStyles() {
20
+ return (args) => {
21
+ const useStyles = makeStyles()(args);
22
+ return () => useStyles().classes;
23
+ };
24
+ }
25
+ const tssReact = { cx, keyframes, makeStyles };
26
+ const legacyMakeStyles = makeLegacyMakeStyles();
27
+ const muiMaterialLib = {
28
+ ...lazyMap(Entries),
29
+ alpha,
30
+ useTheme,
31
+ createTheme,
32
+ ThemeProvider,
33
+ };
34
+ const muiStylesLib = { ...MUIStyles, makeStyles: legacyMakeStyles };
35
+ const libs = {
36
+ ...frameworkShared,
37
+ 'mobx-react': mxreact,
38
+ 'react-dom': ReactDom,
39
+ 'react-dom/client': ReactDomClient,
40
+ // Only lazy component entries are re-exported. The grid *hooks*
41
+ // (useGridApiContext/useGridApiRef/useGridRootProps) are intentionally left
42
+ // out: statically importing them here pulled the entire ~1.2 MB
43
+ // @mui/x-data-grid package into the eager first-paint graph, defeating the
44
+ // lazy import('@mui/x-data-grid') in MuiDataGridReExports. First-party code
45
+ // that needs the hooks imports them directly from '@mui/x-data-grid'.
46
+ '@mui/x-data-grid': {
47
+ ...lazyMap(DataGridEntries),
48
+ },
49
+ '@mui/material/utils': MUIUtils,
50
+ 'tss-react': tssReact,
51
+ 'tss-react/mui': tssReact,
52
+ '@mui/material': muiMaterialLib,
53
+ ...lazyMap(Entries, '@mui/material/'),
54
+ // @mui/icons-material — bundled into external plugins — reads the
55
+ // `createSvgIcon` *named* export from @mui/material/SvgIcon, but lazyMap
56
+ // exposes only the component (its default). SvgIcon is a primitive that's
57
+ // eagerly loaded in practice, so expose it directly with createSvgIcon
58
+ // attached: a default import still lands on a usable component (rollup-plugin-
59
+ // external-globals substitutes the value itself, esbuild's globalExternals
60
+ // reads `.default`), while the named import and icons-material's CJS
61
+ // `require(...).createSvgIcon` both find the util. A shallow copy carries the
62
+ // forwardRef's $$typeof/render so the shared SvgIcon export isn't mutated.
63
+ // Overrides the lazy entry above; verified against both bundlers.
64
+ // GMOD/jbrowse-components#5606.
65
+ '@mui/material/SvgIcon': Object.assign({}, SvgIcon, { createSvgIcon }),
66
+ '@mui/material/styles': muiStylesLib,
67
+ };
68
+ export default libs;
@@ -0,0 +1,12 @@
1
+ import * as React from 'react';
2
+ import * as mst from '@jbrowse/mobx-state-tree';
3
+ import * as mobx from 'mobx';
4
+ import * as ReactJSXRuntime from 'react/jsx-runtime';
5
+ declare const frameworkShared: {
6
+ react: typeof React;
7
+ 'react/jsx-runtime': typeof ReactJSXRuntime;
8
+ mobx: typeof mobx;
9
+ '@jbrowse/mobx-state-tree': typeof mst;
10
+ 'mobx-state-tree': typeof mst;
11
+ };
12
+ export default frameworkShared;
@@ -0,0 +1,16 @@
1
+ // The framework singletons both realms serve for real — one object, imported
2
+ // by the main-thread map and the generated worker map, so a plugin's React and
3
+ // MST are the host's in the worker too and the two maps hold the same values.
4
+ // eslint-disable-next-line no-restricted-imports
5
+ import * as React from 'react';
6
+ import * as mst from '@jbrowse/mobx-state-tree';
7
+ import * as mobx from 'mobx';
8
+ import * as ReactJSXRuntime from 'react/jsx-runtime';
9
+ const frameworkShared = {
10
+ react: React,
11
+ 'react/jsx-runtime': ReactJSXRuntime,
12
+ mobx,
13
+ '@jbrowse/mobx-state-tree': mst,
14
+ 'mobx-state-tree': mst,
15
+ };
16
+ export default frameworkShared;
@@ -0,0 +1,2 @@
1
+ declare const libs: Record<string, unknown>;
2
+ export default libs;