@jbrowse/core 4.3.0 → 5.0.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1265) hide show
  1. package/README.md +1994 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
  37. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
  38. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  39. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
  40. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
  41. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  97. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  98. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  99. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  100. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  101. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  102. package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
  103. package/esm/BaseFeatureWidget/formatDetails.js +82 -0
  104. package/esm/BaseFeatureWidget/index.d.ts +4 -1
  105. package/esm/BaseFeatureWidget/index.js +2 -2
  106. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
  107. package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
  108. package/esm/BaseFeatureWidget/types.d.ts +15 -8
  109. package/esm/BaseFeatureWidget/util.d.ts +2 -37
  110. package/esm/BaseFeatureWidget/util.js +4 -85
  111. package/esm/CorePlugin.js +12 -7
  112. package/esm/PhasedScheduler.d.ts +4 -2
  113. package/esm/PhasedScheduler.js +18 -2
  114. package/esm/Plugin.d.ts +6 -1
  115. package/esm/Plugin.js +7 -0
  116. package/esm/PluginLoader.d.ts +55 -44
  117. package/esm/PluginLoader.js +290 -90
  118. package/esm/PluginManager.d.ts +476 -57
  119. package/esm/PluginManager.js +480 -91
  120. package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
  121. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  122. package/esm/ReExports/MuiReExports.d.ts +3 -134
  123. package/esm/ReExports/MuiReExports.js +43 -16
  124. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  125. package/esm/ReExports/MuiStylesReExports.js +55 -0
  126. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  127. package/esm/ReExports/coreModules.generated.js +528 -0
  128. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  129. package/esm/ReExports/coreWorkerModules.generated.js +488 -0
  130. package/esm/ReExports/frameworkModules.d.ts +2 -0
  131. package/esm/ReExports/frameworkModules.js +68 -0
  132. package/esm/ReExports/frameworkShared.d.ts +12 -0
  133. package/esm/ReExports/frameworkShared.js +16 -0
  134. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  135. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  136. package/esm/ReExports/lazify.d.ts +2 -2
  137. package/esm/ReExports/lazify.js +16 -3
  138. package/esm/ReExports/list.js +433 -160
  139. package/esm/ReExports/modules.d.ts +1 -1
  140. package/esm/ReExports/modules.js +10 -146
  141. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  142. package/esm/ReExports/muiComponentNames.js +130 -0
  143. package/esm/ReExports/registry.d.ts +3 -0
  144. package/esm/ReExports/registry.js +46 -0
  145. package/esm/ReExports/uiStub.d.ts +3 -0
  146. package/esm/ReExports/uiStub.js +33 -0
  147. package/esm/ReExports/workerModules.d.ts +2 -0
  148. package/esm/ReExports/workerModules.js +11 -0
  149. package/esm/TextSearch/BaseResults.d.ts +20 -21
  150. package/esm/TextSearch/BaseResults.js +8 -33
  151. package/esm/TextSearch/TextSearchManager.d.ts +30 -36
  152. package/esm/TextSearch/TextSearchManager.js +138 -44
  153. package/esm/TextSearch/places.d.ts +12 -0
  154. package/esm/TextSearch/places.js +94 -0
  155. package/esm/assemblyManager/assembly.d.ts +310 -35
  156. package/esm/assemblyManager/assembly.js +554 -263
  157. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  158. package/esm/assemblyManager/assemblyAdapters.js +24 -0
  159. package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
  160. package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
  161. package/esm/assemblyManager/assemblyManager.d.ts +586 -323
  162. package/esm/assemblyManager/assemblyManager.js +352 -51
  163. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
  164. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
  165. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  166. package/esm/assemblyManager/geneticCodes.js +44 -0
  167. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
  168. package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
  169. package/esm/assemblyManager/index.d.ts +1 -1
  170. package/esm/assemblyManager/index.js +2 -2
  171. package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
  172. package/esm/assemblyManager/indexAssemblyNames.js +22 -0
  173. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  174. package/esm/assemblyManager/loadRefNameMap.js +75 -0
  175. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  176. package/esm/assemblyManager/refNameColors.js +32 -0
  177. package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
  178. package/esm/assemblyManager/refNameMapKey.js +12 -0
  179. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  180. package/esm/assemblyManager/refNameMaps.js +87 -0
  181. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  182. package/esm/assemblyManager/refNameMismatch.js +66 -0
  183. package/esm/checkPlugins.d.ts +13 -0
  184. package/esm/checkPlugins.js +98 -0
  185. package/esm/configuration/bamIndexFields.d.ts +49 -0
  186. package/esm/configuration/bamIndexFields.js +41 -0
  187. package/esm/configuration/configurationSchema.d.ts +194 -29
  188. package/esm/configuration/configurationSchema.js +439 -145
  189. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  190. package/esm/configuration/configurationSchemaUnion.js +56 -0
  191. package/esm/configuration/configurationSlot.d.ts +373 -30
  192. package/esm/configuration/configurationSlot.js +231 -224
  193. package/esm/configuration/fillLocations.d.ts +14 -0
  194. package/esm/configuration/fillLocations.js +14 -0
  195. package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
  196. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  197. package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
  198. package/esm/configuration/formatDetailsConfigSchema.js +87 -0
  199. package/esm/configuration/fullConfSnapshot.d.ts +13 -0
  200. package/esm/configuration/fullConfSnapshot.js +44 -0
  201. package/esm/configuration/getConf.d.ts +92 -0
  202. package/esm/configuration/getConf.js +141 -0
  203. package/esm/configuration/index.d.ts +32 -3
  204. package/esm/configuration/index.js +27 -2
  205. package/esm/configuration/indexType.d.ts +26 -0
  206. package/esm/configuration/indexType.js +38 -0
  207. package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
  208. package/esm/configuration/mergeFormatCallbacks.js +27 -0
  209. package/esm/configuration/readConfObject.d.ts +34 -0
  210. package/esm/configuration/readConfObject.js +118 -0
  211. package/esm/configuration/requirements.d.ts +37 -0
  212. package/esm/configuration/requirements.js +88 -0
  213. package/esm/configuration/schemaRegistry.d.ts +52 -0
  214. package/esm/configuration/schemaRegistry.js +48 -0
  215. package/esm/configuration/schemaTypes.d.ts +39 -0
  216. package/esm/configuration/schemaTypes.js +105 -0
  217. package/esm/configuration/slotFacade.d.ts +65 -0
  218. package/esm/configuration/slotFacade.js +110 -0
  219. package/esm/configuration/slotValueUtils.d.ts +17 -0
  220. package/esm/configuration/slotValueUtils.js +25 -0
  221. package/esm/configuration/snapshotPreprocess.d.ts +43 -0
  222. package/esm/configuration/snapshotPreprocess.js +161 -0
  223. package/esm/configuration/tabixIndexFields.d.ts +70 -0
  224. package/esm/configuration/tabixIndexFields.js +62 -0
  225. package/esm/configuration/tabixShorthand.d.ts +51 -0
  226. package/esm/configuration/tabixShorthand.js +72 -0
  227. package/esm/configuration/types.d.ts +315 -13
  228. package/esm/configuration/uriShorthand.d.ts +9 -0
  229. package/esm/configuration/uriShorthand.js +16 -0
  230. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
  231. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
  232. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
  233. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
  234. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  235. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  236. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  237. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  238. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  239. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  240. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
  241. package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
  242. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  243. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  244. package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
  245. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  246. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
  247. package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
  248. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  249. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  250. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
  251. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  252. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  253. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  254. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  255. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  256. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
  257. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
  258. package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
  259. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  260. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  261. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  262. package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
  263. package/esm/data_adapters/dataAdapterCache.js +99 -25
  264. package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
  265. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  266. package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
  267. package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
  268. package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
  269. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  270. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  271. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  272. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  273. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  274. package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
  275. package/esm/pluggableElementTypes/DisplayType.js +30 -7
  276. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  277. package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
  278. package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
  279. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
  280. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  281. package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
  282. package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
  283. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
  284. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  285. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  286. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  287. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  288. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  289. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  290. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  291. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  292. package/esm/pluggableElementTypes/TrackType.js +1 -1
  293. package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
  294. package/esm/pluggableElementTypes/ViewType.js +40 -5
  295. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  296. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  297. package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
  298. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  299. package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
  300. package/esm/pluggableElementTypes/extendElementType.js +72 -0
  301. package/esm/pluggableElementTypes/index.d.ts +8 -7
  302. package/esm/pluggableElementTypes/index.js +24 -14
  303. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
  304. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  305. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
  306. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
  307. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
  308. package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
  309. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
  310. package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
  311. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
  312. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  313. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
  314. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
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  1021. package/esm/util/revlist.js +14 -0
  1022. package/esm/util/rowStackGeometry.d.ts +66 -0
  1023. package/esm/util/rowStackGeometry.js +70 -0
  1024. package/esm/util/rpc.d.ts +16 -1
  1025. package/esm/util/rpc.js +12 -1
  1026. package/esm/util/rxjs.d.ts +30 -2
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  1046. package/esm/util/sessionStorage.d.ts +1 -0
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  1052. package/esm/util/shapeNames.d.ts +7 -0
  1053. package/esm/util/shapeNames.js +11 -0
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  1056. package/esm/util/springAnimate.d.ts +20 -0
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  1090. package/esm/util/tss-react/cssAndCx.js +11 -66
  1091. package/esm/util/tss-react/index.d.ts +11 -2
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  1095. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  1096. package/esm/util/tss-react/tools/classnames.js +3 -0
  1097. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  1098. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  1099. package/esm/util/tss-react/types.d.ts +1 -1
  1100. package/esm/util/tss-react/types.js +1 -6
  1101. package/esm/util/types/ElementId.js +1 -1
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  1110. package/esm/util/types/predicate.d.ts +9 -0
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  1120. package/esm/util/unknownSnapshotKeys.js +82 -0
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@@ -0,0 +1,254 @@
1
+ /**
2
+ * What a plugin definition is, and everything that can be answered by looking
3
+ * at one — its url, its name, whether two describe the same plugin.
4
+ *
5
+ * Kept apart from PluginLoader, which pulls in ReExports (effectively all of
6
+ * core) to be able to run a plugin. Inspecting a definition must not cost that:
7
+ * the plugin store resolves definitions and would otherwise import core's
8
+ * config layer back into itself.
9
+ */
10
+ export function isUMDPluginDefinition(def) {
11
+ return 'umdUrl' in def || 'url' in def || 'umdLoc' in def;
12
+ }
13
+ export function isESMPluginDefinition(def) {
14
+ return 'esmUrl' in def || 'esmLoc' in def;
15
+ }
16
+ /**
17
+ * Whether a definition names a store entry to resolve. Deliberately not part of
18
+ * the ESM/UMD pair `assertSingleKind` counts: those are loaders, and a ref
19
+ * is not one. A ref names *which plugin*, and pairing it with a url is the
20
+ * supported migration shape rather than the two-loaders ambiguity that guard
21
+ * exists to refuse.
22
+ */
23
+ export function isStorePluginDefinition(def) {
24
+ return 'storePlugin' in def && typeof def.storePlugin === 'string';
25
+ }
26
+ /** The store entry a definition names, resolved or not. */
27
+ export function storePluginName(def) {
28
+ return isStorePluginDefinition(def) ? def.storePlugin : undefined;
29
+ }
30
+ // Plugins that used to ship as external config `plugins[]` entries but are now
31
+ // bundled into the jbrowse-web/desktop core build. Remote configs on jbrowse.org
32
+ // still list them, so we drop those entries before loading: core already
33
+ // registers the same elements (and wins, since core plugins register first), and
34
+ // skipping the external copy avoids a redundant network fetch plus a flurry of
35
+ // "already registered" console warnings. Matched on the config-level `name`
36
+ // (the external plugin's UMD-global name, e.g. "MafViewer"/"GWAS"), not the core
37
+ // class name — so this runs AFTER `resolveStorePluginRefs`, which is where a
38
+ // store ref acquires the name to match on. Run it before, and a config naming a
39
+ // vendored plugin by package slips through and installs a second copy beside
40
+ // core's. Apply only in products whose core bundle actually vendors these —
41
+ // not globally — so CLI indexing, @jbrowse/img, and react-circular (which don't
42
+ // bundle them) still load the external plugin. Also drives the plugin store,
43
+ // which hides these so a user can't install a colliding second copy
44
+ // (`installablePlugins`, util/pluginStore.ts).
45
+ export const vendoredPluginNames = new Set(['MafViewer', 'GWAS']);
46
+ /**
47
+ * Desktop's half of the same list — a plugin one product bundles and another does
48
+ * not, which the shared set above cannot express.
49
+ *
50
+ * Blat is in Desktop's corePlugins but deliberately not Web's: Web is where
51
+ * cold-load bundle size is paid, and BLAT is niche. So Desktop's bundled copy is
52
+ * the only one that ships. It is what gives BLAT on a genome the user opened
53
+ * from their own disk, where no config names any plugin, and it is the copy that
54
+ * reaches UCSC through the main-process `blatFetch` bridge and the CAPTCHA-solve
55
+ * window. Web has to load the external entry to have BLAT at all.
56
+ *
57
+ * Naming it drops a config's `plugins[]` entry for Blat before Desktop's loader
58
+ * sees it, so a config that carries one does not install a second copy beside
59
+ * the bundled one and append its Tools menu items twice. Nothing carries one
60
+ * today: jb2hubs stamps `sequence.metadata.blatDb`, which names the UCSC db an
61
+ * assembly is searchable under and says nothing about loading a plugin. The
62
+ * entry is a guard for the UMD build (`plugins/blat/scripts/build-umd.ts`),
63
+ * which a config can name and which is how Web would pick BLAT up.
64
+ *
65
+ * It lives here beside the shared set rather than in jbrowse-desktop because the
66
+ * two are read together — a surface consulting one and not the other offers an
67
+ * install the loader then drops, which is what Desktop's plugin store and global
68
+ * plugins dialog both did.
69
+ */
70
+ export const desktopVendoredPluginNames = ['Blat'];
71
+ export function dropVendoredPlugins(defs, alsoVendored = []) {
72
+ const vendored = new Set([...vendoredPluginNames, ...alsoVendored]);
73
+ return defs.filter(d => !(isUMDPluginDefinition(d) && vendored.has(d.name)));
74
+ }
75
+ // The two functions below describe a definition by picking the one url it will
76
+ // be loaded from, so both dispatch in loadPlugin's order — ESM, then UMD. Keep
77
+ // them in step with it: they are what the plugin trust gate (checkPlugins)
78
+ // reads and what the untrusted-plugin prompt shows, so an order that disagrees
79
+ // with the loader's vets one url and executes another. They once did disagree,
80
+ // and a definition naming two loaders was approved on its jbrowse.org url while
81
+ // loadPlugin ran the other. assertSingleKind now rejects such a definition
82
+ // outright; this order is the second half of that guarantee, since the gate
83
+ // runs before the loader does.
84
+ export function pluginDescriptionString(d) {
85
+ if (isESMPluginDefinition(d)) {
86
+ return `ESM plugin ${'esmUrl' in d ? d.esmUrl : d.esmLoc.uri}`;
87
+ }
88
+ else if (isUMDPluginDefinition(d)) {
89
+ return `UMD plugin ${d.name}`;
90
+ }
91
+ else if (isStorePluginDefinition(d)) {
92
+ // an unresolved ref, which is what a resolution failure is reported on: it
93
+ // has no url yet, so the store name is the only thing that identifies it
94
+ return `store plugin ${d.storePlugin}`;
95
+ }
96
+ else {
97
+ return 'unknown plugin';
98
+ }
99
+ }
100
+ /**
101
+ * The url a definition loads from, or undefined when it names no loader at all.
102
+ * Comparisons between definitions go through this rather than `pluginUrl`, whose
103
+ * 'unknown url' placeholder is display text: two unloadable definitions are not
104
+ * the same plugin just because neither has a url.
105
+ */
106
+ export function maybePluginUrl(d) {
107
+ if (isESMPluginDefinition(d)) {
108
+ return 'esmUrl' in d ? d.esmUrl : d.esmLoc.uri;
109
+ }
110
+ else if (isUMDPluginDefinition(d)) {
111
+ return 'umdLoc' in d ? d.umdLoc.uri : 'umdUrl' in d ? d.umdUrl : d.url;
112
+ }
113
+ else {
114
+ return undefined;
115
+ }
116
+ }
117
+ export function pluginUrl(d) {
118
+ return maybePluginUrl(d) ?? 'unknown url';
119
+ }
120
+ /**
121
+ * Whether a definition loads from exactly `url` — the question behind "which
122
+ * definition is this loaded plugin", "is this one in the session's list", "which
123
+ * entry does an uninstall remove".
124
+ *
125
+ * The two undefined guards are the whole point, and both were live as
126
+ * `pluginUrl(d) === url` comparisons. A definition naming no loader reads back as
127
+ * the literal `'unknown url'`, so any two of them compared equal: approving one
128
+ * marked every other unloadable definition trusted, and removing one filtered
129
+ * every other unloadable one out of the config. And the url side is absent for a
130
+ * core or global plugin (no install url was recorded), which must match no
131
+ * definition rather than the first url-less one.
132
+ */
133
+ export function isPluginUrl(d, url) {
134
+ const actual = maybePluginUrl(d);
135
+ return actual !== undefined && actual === url;
136
+ }
137
+ export function pluginName(definition) {
138
+ return 'name' in definition ? definition.name : undefined;
139
+ }
140
+ export function pluginDefinitionMetadata(definition) {
141
+ return {
142
+ name: pluginName(definition),
143
+ url: pluginUrl(definition),
144
+ };
145
+ }
146
+ /**
147
+ * How to name a definition to a person — a crash marker saying what was
148
+ * loading, a warning listing what a host did not pass in.
149
+ *
150
+ * A ref that has not been resolved yet has no url and often no `name`, and
151
+ * everything here used to fall through to `pluginUrl`'s 'unknown url' for it:
152
+ * a marker naming nothing, which is the difference between a banner the user
153
+ * can act on and one that says only that something went wrong.
154
+ */
155
+ export function pluginLabel(definition) {
156
+ const name = pluginName(definition) ?? storePluginName(definition);
157
+ const url = maybePluginUrl(definition);
158
+ if (name === undefined) {
159
+ return pluginUrl(definition);
160
+ }
161
+ return url === undefined ? name : `${name} (${url})`;
162
+ }
163
+ /**
164
+ * Whether two definitions describe the same plugin. They can without being
165
+ * identical — a UMD name+url in a config, an esmUrl in the global list, a store
166
+ * ref in one and the pinned definition it resolves to in the other — so a
167
+ * shared store package, a shared name, or a shared url is each enough. All
168
+ * three are optional (an ESM definition carries no name, an unloadable one no
169
+ * url, a hand-written one no package), and a missing field never matches: two
170
+ * definitions are not the same plugin just because neither names one.
171
+ *
172
+ * The store name is checked first because it is the only one of the three that
173
+ * survives resolution intact. A ref and its resolved form share it; they share
174
+ * no url, and a *bare* ref has no `name` until the manifest supplies one — so
175
+ * this clause is doing work even though a resolved definition's `storePlugin`
176
+ * and `name` agree.
177
+ *
178
+ * This is the single answer to "is this plugin already installed" — dedupe
179
+ * across plugin sources, the plugin store's installed-check — so those cannot
180
+ * drift apart and disagree about what is a duplicate.
181
+ */
182
+ export function samePlugin(a, b) {
183
+ const [refA, refB] = [storePluginName(a), storePluginName(b)];
184
+ const [nameA, nameB] = [pluginName(a), pluginName(b)];
185
+ const [urlA, urlB] = [maybePluginUrl(a), maybePluginUrl(b)];
186
+ return ((refA !== undefined && refA === refB) ||
187
+ (nameA !== undefined && nameA === nameB) ||
188
+ (urlA !== undefined && urlA === urlB));
189
+ }
190
+ function sameStoreRef(entry, loaded) {
191
+ const ref = storePluginName(entry);
192
+ return ref !== undefined && ref === storePluginName(loaded);
193
+ }
194
+ /**
195
+ * Whether a list entry is one the loaded copy could have come from — its url,
196
+ * or the store entry both name.
197
+ *
198
+ * `samePlugin` without the name clause, which would also match a session entry
199
+ * naming the same plugin at another url: that is the copy the dedupe *dropped*,
200
+ * not the list the loaded one lives in.
201
+ *
202
+ * The ref half is what a url comparison cannot do in either direction. An entry
203
+ * the permanent list keeps as a ref resolves to whatever build the store
204
+ * publishes for this JBrowse, so its pinned url and the loaded one drift apart
205
+ * on the first upgrade while the ref stays the same string.
206
+ */
207
+ export function holdsPlugin(entry, loaded) {
208
+ return (isPluginUrl(entry, maybePluginUrl(loaded)) || sameStoreRef(entry, loaded));
209
+ }
210
+ /**
211
+ * Whether a list entry names the exact build that loaded — the question a
212
+ * remove asks, where {@link holdsPlugin} asks which list to look in.
213
+ *
214
+ * A config's `plugins[]` is the one list that can legitimately hold two entries
215
+ * for a single plugin: the update flow writes a second entry at a newer url and
216
+ * then removes the first. So an entry carrying a url is judged on that url
217
+ * alone. Both entries may carry the store ref they were minted under, and
218
+ * matching on it would remove the version just installed.
219
+ *
220
+ * An entry with no url of its own — a bare `{ "storePlugin": "MsaView" }`,
221
+ * which is the form a config at a permanent url is meant to use — pins no
222
+ * build, so the ref is the only thing identifying it. Judged on the url it does
223
+ * not have, such an entry matched nothing: uninstall filtered the list and
224
+ * removed no row, while still asking for the whole-app reload an uninstall
225
+ * triggers, so the plugin came back.
226
+ */
227
+ export function holdsPluginVersion(entry, loaded) {
228
+ const url = maybePluginUrl(entry);
229
+ return url === undefined
230
+ ? sameStoreRef(entry, loaded)
231
+ : url === maybePluginUrl(loaded);
232
+ }
233
+ /**
234
+ * The candidates no definition in `existing` already describes — `dedupePlugins`
235
+ * across two lists whose first one is already settled, for a source loaded after
236
+ * another rather than merged with it.
237
+ */
238
+ export function pluginsNotIn(candidates, existing) {
239
+ return candidates.filter(c => !existing.some(e => samePlugin(e, c)));
240
+ }
241
+ /**
242
+ * Drops later definitions that name a plugin an earlier one already did, so the
243
+ * first source listed wins: a config's own (version-pinned) entry takes
244
+ * precedence over the same plugin from the user's global list.
245
+ */
246
+ export function dedupePlugins(plugins) {
247
+ const kept = [];
248
+ for (const plugin of plugins) {
249
+ if (!kept.some(k => samePlugin(k, plugin))) {
250
+ kept.push(plugin);
251
+ }
252
+ }
253
+ return kept;
254
+ }
@@ -1,40 +1,32 @@
1
1
  import type PluginManager from '../PluginManager.ts';
2
2
  import type { AnyConfigurationModel } from '../configuration/index.ts';
3
- export interface WorkerHandle {
4
- status?: string;
5
- error?: unknown;
6
- on?: (channel: string, callback: (message: unknown) => void) => void;
7
- off?: (channel: string, callback: (message: unknown) => void) => void;
8
- destroy(): void;
9
- call(functionName: string, args?: unknown, options?: {
10
- statusCallback?(message: string): void;
11
- rpcDriverClassName: string;
12
- }): Promise<unknown>;
13
- }
14
- export interface RpcDriverConstructorArgs {
15
- config: AnyConfigurationModel;
16
- }
17
- declare class LazyWorker {
18
- driver: BaseRpcDriver;
19
- workerP?: Promise<WorkerHandle> | undefined;
20
- constructor(driver: BaseRpcDriver);
21
- getWorker(): Promise<WorkerHandle>;
22
- }
3
+ import type RpcMethodType from '../pluggableElementTypes/RpcMethodType.ts';
4
+ import type { RpcHandles } from './RpcRegistry.ts';
5
+ /**
6
+ * The method that drops a session's cached adapters, named once because
7
+ * {@link BaseRpcDriver.freeSession} is the only thing that dispatches it.
8
+ */
9
+ export declare const CORE_FREE_RESOURCES = "CoreFreeResources";
23
10
  export default abstract class BaseRpcDriver {
24
- abstract name: string;
25
- private lastWorkerAssignment;
26
- private workerAssignments;
27
- abstract makeWorker(): Promise<WorkerHandle>;
28
- private workerPool?;
11
+ protected pluginManager: PluginManager;
29
12
  config: AnyConfigurationModel;
30
- constructor(args: RpcDriverConstructorArgs);
31
- filterArgs<THING_TYPE>(thing: THING_TYPE, sessionId: string): THING_TYPE;
32
- remoteAbort(sessionId: string, functionName: string, stopTokenId: number): Promise<void>;
33
- createWorkerPool(): LazyWorker[];
34
- getWorkerPool(): LazyWorker[];
35
- getWorker(sessionId: string): Promise<WorkerHandle>;
36
- call(pluginManager: PluginManager, sessionId: string, functionName: string, args: {
37
- statusCallback?: (message: unknown) => void;
38
- }, options?: {}): Promise<unknown>;
13
+ abstract name: string;
14
+ constructor(pluginManager: PluginManager, config: AnyConfigurationModel);
15
+ /**
16
+ * Drop everything this driver holds for a session — the worker-side adapter
17
+ * cache, and whatever bookkeeping the transport keeps alongside it.
18
+ *
19
+ * A driver operation rather than a `call`, because a free has nothing to do on
20
+ * a transport that never ran this session and must not outlive `destroy`;
21
+ * routing it through `call` did both. ADR-086.
22
+ *
23
+ * The base behavior is the main-thread one: run the method in this realm,
24
+ * where `dataAdapterCache` lives. `invoke`, not `execute`, for the reason
25
+ * `MainThreadRpcDriver.transport` uses it.
26
+ */
27
+ freeSession(sessionId: string): Promise<void>;
28
+ destroy(): void;
29
+ warmUp(): void;
30
+ call(sessionId: string, functionName: string, args: Record<string, unknown> & RpcHandles): Promise<unknown>;
31
+ protected abstract transport(sessionId: string, rpcMethod: RpcMethodType, serializedArgs: Record<string, unknown>, handles: RpcHandles): Promise<unknown>;
39
32
  }
40
- export {};
@@ -1,116 +1,78 @@
1
- import { isAlive, isStateTreeNode } from '@jbrowse/mobx-state-tree';
2
- import { readConfObject } from "../configuration/index.js";
3
- import { clamp } from "../util/index.js";
4
- function isCloneable(thing) {
5
- return !(typeof thing === 'function') && !(thing instanceof Error);
6
- }
7
- function detectHardwareConcurrency() {
8
- const mainThread = typeof window !== 'undefined';
9
- const canDetect = mainThread && 'hardwareConcurrency' in window.navigator;
10
- return mainThread && canDetect ? window.navigator.hardwareConcurrency : 1;
11
- }
12
- class LazyWorker {
13
- driver;
14
- workerP;
15
- constructor(driver) {
16
- this.driver = driver;
17
- }
18
- async getWorker() {
19
- if (!this.workerP) {
20
- this.workerP = this.driver.makeWorker().catch((e) => {
21
- this.workerP = undefined;
22
- throw e;
23
- });
24
- }
25
- return this.workerP;
26
- }
27
- }
1
+ import { checkAbortSignal, withAbortCheck } from '../util/aborting.js';
2
+ /**
3
+ * The method that drops a session's cached adapters, named once because
4
+ * {@link BaseRpcDriver.freeSession} is the only thing that dispatches it.
5
+ */
6
+ export const CORE_FREE_RESOURCES = 'CoreFreeResources';
28
7
  export default class BaseRpcDriver {
29
- lastWorkerAssignment = -1;
30
- workerAssignments = new Map();
31
- workerPool;
8
+ pluginManager;
32
9
  config;
33
- constructor(args) {
34
- this.config = args.config;
10
+ // Held, not threaded. `call`, `transport` and `freeSession` each took one as
11
+ // their first parameter and `RpcManager` passed the same object to all of
12
+ // them on every RPC — a driver is built by the manager that owns it, so it
13
+ // can just have one. Holding it is also what lets `Core-extendWorker` fire
14
+ // where a worker boots rather than on the dispatch path. ADR-086.
15
+ constructor(pluginManager, config) {
16
+ this.pluginManager = pluginManager;
17
+ this.config = config;
35
18
  }
36
- filterArgs(thing, sessionId) {
37
- if (thing === null || thing === undefined) {
38
- return thing;
39
- }
40
- const type = typeof thing;
41
- if (type === 'string' || type === 'number' || type === 'boolean') {
42
- return thing;
43
- }
44
- if (type !== 'object') {
45
- return undefined;
46
- }
47
- if (Array.isArray(thing)) {
48
- return thing
49
- .filter(thing => isCloneable(thing))
50
- .map(t => this.filterArgs(t, sessionId));
51
- }
52
- else if (isStateTreeNode(thing) && !isAlive(thing)) {
53
- throw new Error('dead state tree node passed to RPC call');
54
- }
55
- else if (thing instanceof File) {
56
- return thing;
57
- }
58
- else {
59
- return Object.fromEntries(Object.entries(thing)
60
- .filter(e => isCloneable(e[1]))
61
- .map(([k, v]) => [k, this.filterArgs(v, sessionId)]));
62
- }
63
- }
64
- async remoteAbort(sessionId, functionName, stopTokenId) {
65
- const worker = await this.getWorker(sessionId);
66
- await worker.call(functionName, { stopTokenId }, { rpcDriverClassName: this.name });
67
- }
68
- createWorkerPool() {
69
- const hardwareConcurrency = detectHardwareConcurrency();
70
- const workerCount = readConfObject(this.config, 'workerCount') ||
71
- clamp(1, Math.max(1, hardwareConcurrency - 1), 5);
72
- const workers = [];
73
- for (let i = 0; i < workerCount; i++) {
74
- workers.push(new LazyWorker(this));
75
- }
76
- return workers;
19
+ /**
20
+ * Drop everything this driver holds for a session — the worker-side adapter
21
+ * cache, and whatever bookkeeping the transport keeps alongside it.
22
+ *
23
+ * A driver operation rather than a `call`, because a free has nothing to do on
24
+ * a transport that never ran this session and must not outlive `destroy`;
25
+ * routing it through `call` did both. ADR-086.
26
+ *
27
+ * The base behavior is the main-thread one: run the method in this realm,
28
+ * where `dataAdapterCache` lives. `invoke`, not `execute`, for the reason
29
+ * `MainThreadRpcDriver.transport` uses it.
30
+ */
31
+ async freeSession(sessionId) {
32
+ await this.pluginManager
33
+ .getRpcMethodType(CORE_FREE_RESOURCES)
34
+ .invoke({ sessionId });
77
35
  }
78
- getWorkerPool() {
79
- if (!this.workerPool) {
80
- const res = this.createWorkerPool();
81
- this.workerPool = res;
82
- return res;
83
- }
84
- return this.workerPool;
85
- }
86
- async getWorker(sessionId) {
87
- const workers = this.getWorkerPool();
88
- let workerNumber = this.workerAssignments.get(sessionId);
89
- if (workerNumber === undefined) {
90
- const workerAssignment = (this.lastWorkerAssignment + 1) % workers.length;
91
- this.workerAssignments.set(sessionId, workerAssignment);
92
- this.lastWorkerAssignment = workerAssignment;
93
- workerNumber = workerAssignment;
94
- }
95
- return workers[workerNumber].getWorker();
96
- }
97
- async call(pluginManager, sessionId, functionName, args, options = {}) {
36
+ destroy() { }
37
+ // start whatever a first call would otherwise wait for; nothing, here
38
+ warmUp() { }
39
+ async call(sessionId, functionName, args) {
98
40
  if (!sessionId) {
99
41
  throw new TypeError('sessionId is required');
100
42
  }
101
- const unextendedWorker = await this.getWorker(sessionId);
102
- const worker = pluginManager.evaluateExtensionPoint('Core-extendWorker', unextendedWorker);
103
- const rpcMethod = pluginManager.getRpcMethodType(functionName);
104
- if (!rpcMethod) {
105
- throw new Error(`unknown RPC method ${functionName}`);
106
- }
107
- const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
108
- const filteredAndSerializedArgs = this.filterArgs(serializedArgs, sessionId);
109
- const call = await worker.call(functionName, filteredAndSerializedArgs, {
110
- statusCallback: args.statusCallback,
111
- rpcDriverClassName: this.name,
112
- ...options,
43
+ // An RPC method is addressed by string, so a removed or renamed one is not
44
+ // a type error anywhere — it fails here. It fails WELL: `TypeRecord.get`
45
+ // throws naming the method and listing what is registered, which is the
46
+ // "which plugin is missing" answer. No `undefined` check belongs here; one
47
+ // was added and lint called it dead, correctly.
48
+ const rpcMethod = this.pluginManager.getRpcMethodType(functionName);
49
+ // The two handles are out of band, not data: each transport wires its own
50
+ // channel for them, and neither survives structured clone. The worker
51
+ // postMessage throws on anything that isn't cloneable, surfacing bad data
52
+ // at the boundary instead of silently dropping it.
53
+ //
54
+ // The callback is stripped on the way OUT rather than on the way in, so
55
+ // `serializeArguments` can see it. That is not cosmetic: serialization is
56
+ // where the refName map is resolved, and resolving one downloads the
57
+ // adapter's index (and for an in-memory adapter, the whole file).
58
+ // Destructuring the callback off first left that download with nothing to
59
+ // report through — `loadRefNameMap` forwards a `statusCallback` for exactly
60
+ // this and, for every RPC, was handed undefined.
61
+ //
62
+ // Serialization is the one long await here, and it is wrapped rather than
63
+ // fenced by hand-placed checks so the check on the FAR side comes with the
64
+ // near one. A call already aborted has nothing to deliver to, so refuse it
65
+ // rather than serializing args and waking a worker; an abort landing DURING
66
+ // serialization used to go unseen and the worker ground the fetch to
67
+ // completion. Callers already treat an abort as the ordinary outcome of a
68
+ // superseded fetch.
69
+ const { signal, ...rest } = args;
70
+ checkAbortSignal(signal);
71
+ const { statusCallback: _outOfBand, ...serializedArgs } = await withAbortCheck(signal, () => rpcMethod.serializeArguments(rest));
72
+ const result = await this.transport(sessionId, rpcMethod, serializedArgs, {
73
+ statusCallback: rest.statusCallback,
74
+ signal,
113
75
  });
114
- return rpcMethod.deserializeReturn(call, args, this.name);
76
+ return rpcMethod.deserializeReturn(result, args);
115
77
  }
116
78
  }
@@ -1,14 +1,13 @@
1
1
  import BaseRpcDriver from './BaseRpcDriver.ts';
2
- import type { RpcDriverConstructorArgs } from './BaseRpcDriver.ts';
3
- import type PluginManager from '../PluginManager.ts';
4
- declare class DummyHandle {
5
- destroy(): void;
6
- call(_functionName: string, _filteredArgs?: Record<string, unknown>, _options?: {}): Promise<unknown>;
7
- }
2
+ import type RpcMethodType from '../pluggableElementTypes/RpcMethodType.ts';
3
+ import type { RpcHandles } from './RpcRegistry.ts';
4
+ /**
5
+ * RPC driver that runs RPC functions in-band on the main thread. It owns no
6
+ * worker pool, so `destroy` stays the BaseRpcDriver no-op and `freeSession`
7
+ * stays that class's in-realm free — the adapter cache this driver fills is the
8
+ * main thread's own.
9
+ */
8
10
  export default class MainThreadRpcDriver extends BaseRpcDriver {
9
11
  name: string;
10
- makeWorker: () => Promise<DummyHandle>;
11
- constructor(args: RpcDriverConstructorArgs);
12
- call(pm: PluginManager, sessionId: string, funcName: string, args: Record<string, unknown>): Promise<unknown>;
12
+ protected transport(_sessionId: string, rpcMethod: RpcMethodType, serializedArgs: Record<string, unknown>, { statusCallback, signal }: RpcHandles): Promise<unknown>;
13
13
  }
14
- export {};
@@ -1,33 +1,27 @@
1
- import BaseRpcDriver from "./BaseRpcDriver.js";
2
- class DummyHandle {
3
- destroy() { }
4
- async call(_functionName, _filteredArgs, _options = {}) {
5
- return undefined;
6
- }
7
- }
1
+ import BaseRpcDriver from './BaseRpcDriver.js';
2
+ /**
3
+ * RPC driver that runs RPC functions in-band on the main thread. It owns no
4
+ * worker pool, so `destroy` stays the BaseRpcDriver no-op and `freeSession`
5
+ * stays that class's in-realm free — the adapter cache this driver fills is the
6
+ * main thread's own.
7
+ */
8
8
  export default class MainThreadRpcDriver extends BaseRpcDriver {
9
9
  name = 'MainThreadRpcDriver';
10
- makeWorker;
11
- constructor(args) {
12
- super(args);
13
- this.makeWorker = async () => new DummyHandle();
14
- }
15
- async call(pm, sessionId, funcName, args) {
16
- if (!sessionId) {
17
- throw new TypeError('sessionId is required');
18
- }
19
- const rpcMethod = pm.getRpcMethodType(funcName);
20
- if (!rpcMethod) {
21
- throw new Error(`unknown RPC method ${funcName}`);
22
- }
23
- if (rpcMethod.supportsDirectExecution()) {
24
- const result = await rpcMethod.executeDirect(args);
25
- if (result !== undefined) {
26
- return result;
27
- }
28
- }
29
- const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
30
- const result = await rpcMethod.execute(serializedArgs, this.name);
31
- return rpcMethod.deserializeReturn(result, args, this.name);
10
+ async transport(_sessionId, rpcMethod, serializedArgs, { statusCallback, signal }) {
11
+ // re-attach the out-of-band handles that BaseRpcDriver.call split off,
12
+ // mirroring how the worker re-wires them on the far side of postMessage —
13
+ // including the case where there is none, which `wrapForRpc` and
14
+ // `RpcServer` answer by adding no key at all. Spreading `statusCallback:
15
+ // undefined` in would leave the two drivers handing `execute` bags that
16
+ // differ by a key, which is the kind of difference nothing tests and
17
+ // something eventually reads.
18
+ //
19
+ // `invoke`, not `execute` — it is the entry point that deserializes the
20
+ // arguments first, and the worker binds the same one
21
+ return rpcMethod.invoke({
22
+ ...serializedArgs,
23
+ ...(statusCallback ? { statusCallback } : {}),
24
+ ...(signal ? { signal } : {}),
25
+ });
32
26
  }
33
27
  }
@@ -0,0 +1,50 @@
1
+ import type { ErrorObject } from './serializeError/index.ts';
2
+ type Listener = (arg: unknown) => void;
3
+ interface RpcMessageData {
4
+ uid: string;
5
+ libRpc?: true;
6
+ error?: string | ErrorObject;
7
+ eventName?: string;
8
+ data?: unknown;
9
+ }
10
+ interface PendingCall {
11
+ resolve: (data: unknown) => void;
12
+ reject: (error: Error) => void;
13
+ }
14
+ export default class RpcClient {
15
+ worker: Worker;
16
+ pending: Map<string, PendingCall>;
17
+ private destroyed;
18
+ private events;
19
+ private counter;
20
+ constructor(worker: Worker);
21
+ on(event: string, listener: Listener): this;
22
+ off(event: string, listener: Listener): this;
23
+ emit(event: string, data: unknown): this;
24
+ protected handler(e: MessageEvent<RpcMessageData>): void;
25
+ destroy(): void;
26
+ private rejectAllPending;
27
+ protected catch(e: ErrorEvent): void;
28
+ protected reject(uid: string, error: string | ErrorObject): void;
29
+ protected resolve(uid: string, data: unknown): void;
30
+ /**
31
+ * Abort the call `uid`, so the signal it runs under in the worker aborts.
32
+ * Fire-and-forget: it settles no pending call, and a worker no longer running
33
+ * that call ignores it.
34
+ */
35
+ abort(uid: string): void;
36
+ /**
37
+ * No transfer list: transferables flow only worker → main, in a reply's
38
+ * rpcResult wrapper. Transferring an argument would neuter the main thread's
39
+ * own buffer — this took an option for one and nothing ever passed it.
40
+ *
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+ * With a `signal`, the worker runs the method under a signal of its own and
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+ * aborts it when this one aborts. The uid is the call's identity on both
43
+ * sides, so the abort frame needs nothing else; the listener is attached
44
+ * before the call frame is posted and removed when the call settles, so an
45
+ * abort in between reaches a worker still running the call, and one after
46
+ * reaches nothing.
47
+ */
48
+ call(method: string, data: unknown, signal?: AbortSignal): Promise<unknown>;
49
+ }
50
+ export {};