@jbrowse/core 4.3.0 → 5.0.0-beta.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1994 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
- package/esm/BaseFeatureWidget/formatDetails.js +82 -0
- package/esm/BaseFeatureWidget/index.d.ts +4 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
- package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
- package/esm/BaseFeatureWidget/types.d.ts +15 -8
- package/esm/BaseFeatureWidget/util.d.ts +2 -37
- package/esm/BaseFeatureWidget/util.js +4 -85
- package/esm/CorePlugin.js +12 -7
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +55 -44
- package/esm/PluginLoader.js +290 -90
- package/esm/PluginManager.d.ts +476 -57
- package/esm/PluginManager.js +480 -91
- package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/coreModules.generated.d.ts +2 -0
- package/esm/ReExports/coreModules.generated.js +528 -0
- package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/coreWorkerModules.generated.js +488 -0
- package/esm/ReExports/frameworkModules.d.ts +2 -0
- package/esm/ReExports/frameworkModules.js +68 -0
- package/esm/ReExports/frameworkShared.d.ts +12 -0
- package/esm/ReExports/frameworkShared.js +16 -0
- package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +433 -160
- package/esm/ReExports/modules.d.ts +1 -1
- package/esm/ReExports/modules.js +10 -146
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/registry.d.ts +3 -0
- package/esm/ReExports/registry.js +46 -0
- package/esm/ReExports/uiStub.d.ts +3 -0
- package/esm/ReExports/uiStub.js +33 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +11 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +30 -36
- package/esm/TextSearch/TextSearchManager.js +138 -44
- package/esm/TextSearch/places.d.ts +12 -0
- package/esm/TextSearch/places.js +94 -0
- package/esm/assemblyManager/assembly.d.ts +310 -35
- package/esm/assemblyManager/assembly.js +554 -263
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +24 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
- package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
- package/esm/assemblyManager/assemblyManager.d.ts +586 -323
- package/esm/assemblyManager/assemblyManager.js +352 -51
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +44 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
- package/esm/assemblyManager/indexAssemblyNames.js +22 -0
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +75 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
- package/esm/assemblyManager/refNameMapKey.js +12 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +13 -0
- package/esm/checkPlugins.js +98 -0
- package/esm/configuration/bamIndexFields.d.ts +49 -0
- package/esm/configuration/bamIndexFields.js +41 -0
- package/esm/configuration/configurationSchema.d.ts +194 -29
- package/esm/configuration/configurationSchema.js +439 -145
- package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
- package/esm/configuration/configurationSchemaUnion.js +56 -0
- package/esm/configuration/configurationSlot.d.ts +373 -30
- package/esm/configuration/configurationSlot.js +231 -224
- package/esm/configuration/fillLocations.d.ts +14 -0
- package/esm/configuration/fillLocations.js +14 -0
- package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
- package/esm/configuration/formatDetailsConfigSchema.js +87 -0
- package/esm/configuration/fullConfSnapshot.d.ts +13 -0
- package/esm/configuration/fullConfSnapshot.js +44 -0
- package/esm/configuration/getConf.d.ts +92 -0
- package/esm/configuration/getConf.js +141 -0
- package/esm/configuration/index.d.ts +32 -3
- package/esm/configuration/index.js +27 -2
- package/esm/configuration/indexType.d.ts +26 -0
- package/esm/configuration/indexType.js +38 -0
- package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
- package/esm/configuration/mergeFormatCallbacks.js +27 -0
- package/esm/configuration/readConfObject.d.ts +34 -0
- package/esm/configuration/readConfObject.js +118 -0
- package/esm/configuration/requirements.d.ts +37 -0
- package/esm/configuration/requirements.js +88 -0
- package/esm/configuration/schemaRegistry.d.ts +52 -0
- package/esm/configuration/schemaRegistry.js +48 -0
- package/esm/configuration/schemaTypes.d.ts +39 -0
- package/esm/configuration/schemaTypes.js +105 -0
- package/esm/configuration/slotFacade.d.ts +65 -0
- package/esm/configuration/slotFacade.js +110 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/snapshotPreprocess.d.ts +43 -0
- package/esm/configuration/snapshotPreprocess.js +161 -0
- package/esm/configuration/tabixIndexFields.d.ts +70 -0
- package/esm/configuration/tabixIndexFields.js +62 -0
- package/esm/configuration/tabixShorthand.d.ts +51 -0
- package/esm/configuration/tabixShorthand.js +72 -0
- package/esm/configuration/types.d.ts +315 -13
- package/esm/configuration/uriShorthand.d.ts +9 -0
- package/esm/configuration/uriShorthand.js +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
- package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
- package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
- package/esm/data_adapters/dataAdapterCache.js +99 -25
- package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
- package/esm/pluggableElementTypes/DisplayType.js +30 -7
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
- package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
- package/esm/pluggableElementTypes/ViewType.js +40 -5
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
- package/esm/pluggableElementTypes/extendElementType.js +72 -0
- package/esm/pluggableElementTypes/index.d.ts +8 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +26 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +31 -17
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +142 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +215 -90
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +111 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +54 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +50 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +147 -0
- package/esm/pluggableElementTypes/models/index.d.ts +5 -3
- package/esm/pluggableElementTypes/models/index.js +9 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +48 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +114 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +10 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +272 -100
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
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- package/esm/util/useFetchPlugins.d.ts +16 -0
- package/esm/util/useFetchPlugins.js +18 -0
- package/esm/util/useMeasure.d.ts +11 -1
- package/esm/util/useMeasure.js +20 -6
- package/esm/util/usePanZoom.d.ts +75 -0
- package/esm/util/usePanZoom.js +175 -0
- package/esm/util/usePanelVirtualScroll.d.ts +9 -0
- package/esm/util/usePanelVirtualScroll.js +15 -0
- package/esm/util/usePointerDrag.d.ts +37 -0
- package/esm/util/usePointerDrag.js +61 -0
- package/esm/util/useRafCommit.d.ts +4 -0
- package/esm/util/useRafCommit.js +50 -0
- package/esm/util/useResizeDrag.d.ts +91 -0
- package/esm/util/useResizeDrag.js +105 -0
- package/esm/util/useRowVirtualScroll.d.ts +9 -0
- package/esm/util/useRowVirtualScroll.js +22 -0
- package/esm/util/useVirtualScrollWheel.d.ts +23 -0
- package/esm/util/useVirtualScrollWheel.js +74 -0
- package/esm/util/viewHighlights.d.ts +3 -0
- package/esm/util/viewHighlights.js +5 -0
- package/esm/util/viewStatus.d.ts +90 -0
- package/esm/util/viewStatus.js +54 -0
- package/esm/util/virtualRange.d.ts +36 -0
- package/esm/util/virtualRange.js +26 -0
- package/esm/util/webStorage.d.ts +26 -0
- package/esm/util/webStorage.js +92 -0
- package/esm/util/wheelZoom.d.ts +65 -0
- package/esm/util/wheelZoom.js +297 -0
- package/esm/util/whenViewSettled.d.ts +74 -0
- package/esm/util/whenViewSettled.js +77 -0
- package/esm/util/withFeatureDetails.d.ts +34 -0
- package/esm/util/withFeatureDetails.js +59 -0
- package/esm/util/withLaunchInput.d.ts +174 -0
- package/esm/util/withLaunchInput.js +274 -0
- package/package.json +290 -820
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
- package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
- package/esm/ReExports/BaseFeatureDetails.js +0 -9
- package/esm/ReExports/DataGrid.d.ts +0 -1
- package/esm/ReExports/DataGrid.js +0 -1
- package/esm/ReExports/index.d.ts +0 -1
- package/esm/ReExports/index.js +0 -1
- package/esm/configuration/util.d.ts +0 -10
- package/esm/configuration/util.js +0 -123
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
- package/esm/data_adapters/util.d.ts +0 -1
- package/esm/data_adapters/util.js +0 -6
- package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
- package/esm/pluggableElementTypes/GlyphType.js +0 -18
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
- package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
- package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
- package/esm/pluggableElementTypes/renderers/index.js +0 -6
- package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
- package/esm/pluggableElementTypes/renderers/util.js +0 -14
- package/esm/rpc/baseRpcConfig.d.ts +0 -8
- package/esm/rpc/baseRpcConfig.js +0 -10
- package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
- package/esm/rpc/mainThreadRpcConfig.js +0 -8
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
- package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
- package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
- package/esm/rpc/methods/CoreRender.d.ts +0 -14
- package/esm/rpc/methods/CoreRender.js +0 -40
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
- package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
- package/esm/rpc/methods/util.d.ts +0 -15
- package/esm/rpc/methods/util.js +0 -7
- package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
- package/esm/rpc/webWorkerRpcConfig.js +0 -8
- package/esm/ui/MenuButton.d.ts +0 -1
- package/esm/ui/MenuButton.js +0 -1
- package/esm/ui/MenuItems.d.ts +0 -15
- package/esm/ui/MenuItems.js +0 -59
- package/esm/ui/useEvent.d.ts +0 -1
- package/esm/ui/useEvent.js +0 -10
- package/esm/util/blobToDataURL.d.ts +0 -1
- package/esm/util/blobToDataURL.js +0 -14
- package/esm/util/compositeMap.d.ts +0 -11
- package/esm/util/compositeMap.js +0 -59
- package/esm/util/flatqueue/index.d.ts +0 -11
- package/esm/util/flatqueue/index.js +0 -61
- package/esm/util/layouts/BaseLayout.d.ts +0 -30
- package/esm/util/layouts/MultiLayout.d.ts +0 -12
- package/esm/util/layouts/MultiLayout.js +0 -40
- package/esm/util/layouts/PileupLayout.d.ts +0 -41
- package/esm/util/layouts/PileupLayout.js +0 -202
- package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/esm/util/layouts/PrecomputedLayout.js +0 -71
- package/esm/util/layouts/SceneGraph.d.ts +0 -31
- package/esm/util/layouts/SceneGraph.js +0 -121
- package/esm/util/makeAbortableReaction.d.ts +0 -3
- package/esm/util/makeAbortableReaction.js +0 -47
- package/esm/util/map-obj/index.d.ts +0 -13
- package/esm/util/map-obj/index.js +0 -92
- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/stopToken.d.ts +0 -19
- package/esm/util/stopToken.js +0 -90
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
- /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
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limit?: number;
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import PluggableElementBase from './PluggableElementBase.ts';
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import type { AnyConfigurationModel } from '../configuration/index.ts';
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export interface GlyphRenderContext {
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ctx: CanvasRenderingContext2D;
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feature: Feature;
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region: Region;
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config: AnyConfigurationModel;
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topLevel: boolean;
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canvasWidth: number;
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export interface GlyphFeatureLayout {
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feature: Feature;
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x: number;
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y: number;
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width: number;
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height: number;
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children: GlyphFeatureLayout[];
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}
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export interface GlyphArgs {
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name: string;
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displayName?: string;
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draw: (context: GlyphRenderContext) => void;
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getChildFeatures?: (feature: Feature, config: AnyConfigurationModel) => Feature[];
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getHeightMultiplier?: (feature: Feature, config: AnyConfigurationModel) => number;
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priority?: number;
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}
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export default class GlyphType extends PluggableElementBase {
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draw: (context: GlyphRenderContext) => void;
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getChildFeatures?: (feature: Feature, config: AnyConfigurationModel) => Feature[];
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getHeightMultiplier?: (feature: Feature, config: AnyConfigurationModel) => number;
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getSubfeatureMouseover?: (childFeature: Feature) => string | undefined;
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match?: (feature: Feature) => boolean;
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priority: number;
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constructor(args: GlyphArgs);
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}
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import PluggableElementBase from "./PluggableElementBase.js";
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export default class GlyphType extends PluggableElementBase {
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draw;
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getChildFeatures;
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getHeightMultiplier;
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getSubfeatureMouseover;
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match;
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priority;
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constructor(args) {
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super(args);
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this.draw = args.draw;
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this.getChildFeatures = args.getChildFeatures;
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this.getHeightMultiplier = args.getHeightMultiplier;
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this.getSubfeatureMouseover = args.getSubfeatureMouseover;
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this.match = args.match;
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this.priority = args.priority ?? 0;
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}
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}
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import { getConf } from "../../../configuration/index.js";
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export async function fetchSequence({ session, region, }) {
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const { rpcManager, assemblyManager } = session;
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const assembly = assemblyManager.get(region.assemblyName);
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throw new Error(`assembly ${region.assemblyName} not found`);
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const sessionId = 'getSequence';
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return rpcManager.call(sessionId, 'CoreGetSequence', {
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adapterConfig: getConf(assembly, ['sequence', 'adapter']),
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region: {
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},
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sessionId,
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});
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}
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@@ -1,52 +0,0 @@
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import FeatureRendererType from './FeatureRendererType.ts';
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import PrecomputedLayout from '../../util/layouts/PrecomputedLayout.ts';
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import type { RenderArgs as FeatureRenderArgs, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderArgsSerialized as FeatureRenderArgsSerialized, RenderResults as FeatureRenderResults, ResultsDeserialized as FeatureResultsDeserialized, ResultsSerialized as FeatureResultsSerialized } from './FeatureRendererType.ts';
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import type { LayoutSessionLike, LayoutSessionProps } from './LayoutSession.ts';
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import type { RenderReturn } from './RendererType.tsx';
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import type RpcManager from '../../rpc/RpcManager.ts';
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import type { Feature, Region } from '../../util/index.ts';
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import type { BaseLayout, SerializedLayout } from '../../util/layouts/BaseLayout.ts';
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export interface RenderArgs extends FeatureRenderArgs {
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bpPerPx: number;
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trackInstanceId: string;
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}
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export interface RenderArgsSerialized extends FeatureRenderArgsSerialized {
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bpPerPx: number;
|
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}
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export interface RenderArgsDeserialized extends FeatureRenderArgsDeserialized {
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statusCallback?: (arg: string) => void;
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bpPerPx: number;
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trackInstanceId: string;
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}
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export interface RenderResults extends FeatureRenderResults {
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layout?: BaseLayout<Feature> | SerializedLayout;
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}
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|
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export interface ResultsSerialized extends FeatureResultsSerialized {
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maxHeightReached: boolean;
|
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layout: SerializedLayout;
|
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}
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|
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export interface ResultsDeserialized extends FeatureResultsDeserialized {
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maxHeightReached: boolean;
|
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layout: PrecomputedLayout<string>;
|
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}
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export default class BoxRendererType extends FeatureRendererType {
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layoutSessions: Record<string, LayoutSessionLike>;
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createLayoutSession(props: LayoutSessionProps): LayoutSessionLike;
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getLayoutSession(props: {
|
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sessionId: string;
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trackInstanceId: string;
|
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|
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}): LayoutSessionLike | undefined;
|
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|
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getWorkerSession(props: LayoutSessionProps & {
|
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sessionId: string;
|
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|
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trackInstanceId: string;
|
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}): LayoutSessionLike;
|
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getExpandedRegion(region: Region, renderArgs: RenderArgsDeserialized): Region;
|
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freeResources(args: RenderArgs): void;
|
|
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|
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freeResourcesInClient(rpcManager: RpcManager, args: RenderArgs): Promise<void>;
|
|
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|
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deserializeLayoutInClient(json: SerializedLayout): PrecomputedLayout<unknown>;
|
|
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|
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deserializeResultsInClient(result: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
|
|
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|
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createLayoutInWorker(args: RenderArgsDeserialized): BaseLayout<unknown>;
|
|
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|
-
serializeLayout(layout: BaseLayout<unknown>, args: RenderArgsDeserialized): SerializedLayout;
|
|
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|
-
render(renderArgs: RenderArgsDeserialized): Promise<RenderReturn>;
|
|
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|
-
serializeResultsInWorker(results: RenderResults, args: RenderArgsDeserialized): ResultsSerialized;
|
|
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|
-
}
|
|
@@ -1,78 +0,0 @@
|
|
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|
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import FeatureRendererType from "./FeatureRendererType.js";
|
|
2
|
-
import { LayoutSession } from "./LayoutSession.js";
|
|
3
|
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import { expandRegion } from "./util.js";
|
|
4
|
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import { readConfObject } from "../../configuration/index.js";
|
|
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|
-
import { getLayoutId } from "../../util/index.js";
|
|
6
|
-
import PrecomputedLayout from "../../util/layouts/PrecomputedLayout.js";
|
|
7
|
-
export default class BoxRendererType extends FeatureRendererType {
|
|
8
|
-
layoutSessions = {};
|
|
9
|
-
createLayoutSession(props) {
|
|
10
|
-
return new LayoutSession(props);
|
|
11
|
-
}
|
|
12
|
-
getLayoutSession(props) {
|
|
13
|
-
return this.layoutSessions[getLayoutId(props)];
|
|
14
|
-
}
|
|
15
|
-
getWorkerSession(props) {
|
|
16
|
-
const key = getLayoutId(props);
|
|
17
|
-
if (!this.layoutSessions[key]) {
|
|
18
|
-
this.layoutSessions[key] = this.createLayoutSession(props);
|
|
19
|
-
}
|
|
20
|
-
return this.layoutSessions[key].update(props);
|
|
21
|
-
}
|
|
22
|
-
getExpandedRegion(region, renderArgs) {
|
|
23
|
-
const { bpPerPx, config } = renderArgs;
|
|
24
|
-
const maxFeatureGlyphExpansion = readConfObject(config, 'maxFeatureGlyphExpansion') || 0;
|
|
25
|
-
const bpExpansion = Math.round(maxFeatureGlyphExpansion * bpPerPx);
|
|
26
|
-
return expandRegion(region, bpExpansion);
|
|
27
|
-
}
|
|
28
|
-
freeResources(args) {
|
|
29
|
-
const key = getLayoutId(args);
|
|
30
|
-
const session = this.layoutSessions[key];
|
|
31
|
-
if (session) {
|
|
32
|
-
const region = args.regions[0];
|
|
33
|
-
session.layout.discardRange(region.refName, region.start, region.end);
|
|
34
|
-
}
|
|
35
|
-
}
|
|
36
|
-
async freeResourcesInClient(rpcManager, args) {
|
|
37
|
-
this.freeResources(args);
|
|
38
|
-
return super.freeResourcesInClient(rpcManager, args);
|
|
39
|
-
}
|
|
40
|
-
deserializeLayoutInClient(json) {
|
|
41
|
-
return new PrecomputedLayout(json);
|
|
42
|
-
}
|
|
43
|
-
deserializeResultsInClient(result, args) {
|
|
44
|
-
const layout = this.deserializeLayoutInClient(result.layout);
|
|
45
|
-
return super.deserializeResultsInClient({
|
|
46
|
-
...result,
|
|
47
|
-
layout,
|
|
48
|
-
}, args);
|
|
49
|
-
}
|
|
50
|
-
createLayoutInWorker(args) {
|
|
51
|
-
const { regions } = args;
|
|
52
|
-
const { layout } = this.getWorkerSession(args);
|
|
53
|
-
return layout.getSublayout(regions[0].refName);
|
|
54
|
-
}
|
|
55
|
-
serializeLayout(layout, args) {
|
|
56
|
-
const region = args.regions[0];
|
|
57
|
-
return layout.serializeRegion(this.getExpandedRegion(region, args));
|
|
58
|
-
}
|
|
59
|
-
async render(renderArgs) {
|
|
60
|
-
const features = await this.getFeatures(renderArgs);
|
|
61
|
-
const layout = this.createLayoutInWorker(renderArgs);
|
|
62
|
-
return { features, layout };
|
|
63
|
-
}
|
|
64
|
-
serializeResultsInWorker(results, args) {
|
|
65
|
-
const { features, ...rest } = super.serializeResultsInWorker(results, args);
|
|
66
|
-
const region = args.regions[0];
|
|
67
|
-
const resultLayout = results.layout;
|
|
68
|
-
const layout = resultLayout && 'serializeRegion' in resultLayout
|
|
69
|
-
? resultLayout.serializeRegion(this.getExpandedRegion(region, args))
|
|
70
|
-
: resultLayout;
|
|
71
|
-
return {
|
|
72
|
-
...rest,
|
|
73
|
-
layout,
|
|
74
|
-
maxHeightReached: layout.maxHeightReached,
|
|
75
|
-
features: features?.filter(f => !!layout.rectangles[f.uniqueId]),
|
|
76
|
-
};
|
|
77
|
-
}
|
|
78
|
-
}
|
|
@@ -1,58 +0,0 @@
|
|
|
1
|
-
import ServerSideRendererType from './ServerSideRendererType.ts';
|
|
2
|
-
import type { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, RenderArgsSerialized as ServerSideRenderArgsSerialized, RenderResults as ServerSideRenderResults, RenderReturn, ResultsDeserialized as ServerSideResultsDeserialized, ResultsSerialized as ServerSideResultsSerialized } from './ServerSideRendererType.ts';
|
|
3
|
-
import type { AnyConfigurationModel } from '../../configuration/index.ts';
|
|
4
|
-
import type { Feature, SimpleFeatureSerialized } from '../../util/simpleFeature.ts';
|
|
5
|
-
import type { AugmentedRegion as Region } from '../../util/types/index.ts';
|
|
6
|
-
export interface RenderArgs extends ServerSideRenderArgs {
|
|
7
|
-
displayModel?: {
|
|
8
|
-
id: string;
|
|
9
|
-
selectedFeatureId?: string;
|
|
10
|
-
};
|
|
11
|
-
regions: Region[];
|
|
12
|
-
blockKey: string;
|
|
13
|
-
}
|
|
14
|
-
export interface RenderArgsSerialized extends ServerSideRenderArgsSerialized {
|
|
15
|
-
displayModel?: {
|
|
16
|
-
id: string;
|
|
17
|
-
selectedFeatureId?: string;
|
|
18
|
-
};
|
|
19
|
-
regions: Region[];
|
|
20
|
-
blockKey: string;
|
|
21
|
-
}
|
|
22
|
-
export interface RenderArgsDeserialized extends ServerSideRenderArgsDeserialized {
|
|
23
|
-
displayModel: {
|
|
24
|
-
id: string;
|
|
25
|
-
selectedFeatureId?: string;
|
|
26
|
-
};
|
|
27
|
-
regions: Region[];
|
|
28
|
-
blockKey: string;
|
|
29
|
-
adapterConfig: AnyConfigurationModel;
|
|
30
|
-
}
|
|
31
|
-
export interface RenderResults extends ServerSideRenderResults {
|
|
32
|
-
features?: Map<string, Feature>;
|
|
33
|
-
}
|
|
34
|
-
export interface ResultsSerialized extends ServerSideResultsSerialized {
|
|
35
|
-
features?: SimpleFeatureSerialized[];
|
|
36
|
-
}
|
|
37
|
-
export interface ResultsDeserialized extends ServerSideResultsDeserialized {
|
|
38
|
-
features: Map<string, Feature>;
|
|
39
|
-
blockKey: string;
|
|
40
|
-
}
|
|
41
|
-
export default class FeatureRendererType extends ServerSideRendererType {
|
|
42
|
-
renderDirect(args: RenderArgs): Promise<{
|
|
43
|
-
blockKey: string;
|
|
44
|
-
reactElement?: React.ReactElement;
|
|
45
|
-
html?: string;
|
|
46
|
-
} | {
|
|
47
|
-
blockKey: string;
|
|
48
|
-
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
49
|
-
html?: string;
|
|
50
|
-
}>;
|
|
51
|
-
serializeArgsInClient(args: RenderArgs): ServerSideRenderArgsSerialized;
|
|
52
|
-
deserializeResultsInClient(result: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
|
|
53
|
-
serializeResultsInWorker(result: RenderResults, args: RenderArgsDeserialized): ResultsSerialized;
|
|
54
|
-
getExpandedRegion(region: Region, _renderArgs: RenderArgsDeserialized): Region;
|
|
55
|
-
getFeatures(renderArgs: RenderArgsDeserialized): Promise<Map<string, Feature>>;
|
|
56
|
-
featurePassesFilters(renderArgs: RenderArgsDeserialized, feature: Feature): boolean;
|
|
57
|
-
render(renderArgs: RenderArgsDeserialized): Promise<RenderReturn>;
|
|
58
|
-
}
|
|
@@ -1,77 +0,0 @@
|
|
|
1
|
-
import { firstValueFrom } from 'rxjs';
|
|
2
|
-
import { toArray } from 'rxjs/operators';
|
|
3
|
-
import ServerSideRendererType from "./ServerSideRendererType.js";
|
|
4
|
-
import { normalizeRegion } from "./util.js";
|
|
5
|
-
import { isFeatureAdapter } from "../../data_adapters/BaseAdapter/index.js";
|
|
6
|
-
import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
|
|
7
|
-
import { iterMap } from "../../util/index.js";
|
|
8
|
-
import SimpleFeature from "../../util/simpleFeature.js";
|
|
9
|
-
export default class FeatureRendererType extends ServerSideRendererType {
|
|
10
|
-
async renderDirect(args) {
|
|
11
|
-
const result = await super.renderDirect(args);
|
|
12
|
-
return {
|
|
13
|
-
...result,
|
|
14
|
-
blockKey: args.blockKey,
|
|
15
|
-
};
|
|
16
|
-
}
|
|
17
|
-
serializeArgsInClient(args) {
|
|
18
|
-
return super.serializeArgsInClient({
|
|
19
|
-
...args,
|
|
20
|
-
displayModel: undefined,
|
|
21
|
-
regions: structuredClone(args.regions),
|
|
22
|
-
});
|
|
23
|
-
}
|
|
24
|
-
deserializeResultsInClient(result, args) {
|
|
25
|
-
const deserializedFeatures = new Map(result.features
|
|
26
|
-
?.map(f => SimpleFeature.fromJSON(f))
|
|
27
|
-
.map(f => [f.id(), f]));
|
|
28
|
-
const deserialized = super.deserializeResultsInClient({
|
|
29
|
-
...result,
|
|
30
|
-
features: deserializedFeatures,
|
|
31
|
-
}, args);
|
|
32
|
-
return {
|
|
33
|
-
...deserialized,
|
|
34
|
-
blockKey: args.blockKey,
|
|
35
|
-
features: deserializedFeatures,
|
|
36
|
-
};
|
|
37
|
-
}
|
|
38
|
-
serializeResultsInWorker(result, args) {
|
|
39
|
-
const serialized = super.serializeResultsInWorker(result, args);
|
|
40
|
-
const { features } = result;
|
|
41
|
-
return {
|
|
42
|
-
...serialized,
|
|
43
|
-
features: features instanceof Map
|
|
44
|
-
? iterMap(features.values(), f => f.toJSON(), features.size)
|
|
45
|
-
: undefined,
|
|
46
|
-
};
|
|
47
|
-
}
|
|
48
|
-
getExpandedRegion(region, _renderArgs) {
|
|
49
|
-
return region;
|
|
50
|
-
}
|
|
51
|
-
async getFeatures(renderArgs) {
|
|
52
|
-
const pm = this.pluginManager;
|
|
53
|
-
const { regions, sessionId, adapterConfig } = renderArgs;
|
|
54
|
-
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
55
|
-
if (!isFeatureAdapter(dataAdapter)) {
|
|
56
|
-
throw new Error('Adapter does not support retrieving features');
|
|
57
|
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}
|
|
58
|
-
const requestRegions = regions.map(r => normalizeRegion(r));
|
|
59
|
-
const featureObservable = requestRegions.length === 1
|
|
60
|
-
? dataAdapter.getFeatures(this.getExpandedRegion(requestRegions[0], renderArgs), renderArgs)
|
|
61
|
-
: dataAdapter.getFeaturesInMultipleRegions(requestRegions, renderArgs);
|
|
62
|
-
const feats = await firstValueFrom(featureObservable.pipe(toArray()));
|
|
63
|
-
return new Map(feats
|
|
64
|
-
.filter(feat => this.featurePassesFilters(renderArgs, feat))
|
|
65
|
-
.map(feat => [feat.id(), feat]));
|
|
66
|
-
}
|
|
67
|
-
featurePassesFilters(renderArgs, feature) {
|
|
68
|
-
return renderArgs.filters
|
|
69
|
-
? renderArgs.filters.passes(feature, renderArgs)
|
|
70
|
-
: true;
|
|
71
|
-
}
|
|
72
|
-
async render(renderArgs) {
|
|
73
|
-
const features = await this.getFeatures(renderArgs);
|
|
74
|
-
const result = await super.render({ ...renderArgs, features });
|
|
75
|
-
return { ...result, features };
|
|
76
|
-
}
|
|
77
|
-
}
|
|
@@ -1,31 +0,0 @@
|
|
|
1
|
-
import GranularRectLayout from '../../util/layouts/GranularRectLayout.ts';
|
|
2
|
-
import MultiLayout from '../../util/layouts/MultiLayout.ts';
|
|
3
|
-
import type SerializableFilterChain from './util/serializableFilterChain.ts';
|
|
4
|
-
import type { AnyConfigurationModel } from '../../configuration/index.ts';
|
|
5
|
-
import type { Region } from '../../util/index.ts';
|
|
6
|
-
import type { BaseLayout } from '../../util/layouts/index.ts';
|
|
7
|
-
export interface LayoutSessionProps {
|
|
8
|
-
regions: Region[];
|
|
9
|
-
config: AnyConfigurationModel;
|
|
10
|
-
bpPerPx: number;
|
|
11
|
-
filters?: SerializableFilterChain;
|
|
12
|
-
}
|
|
13
|
-
export type BaseMultiLayout = MultiLayout<BaseLayout<unknown>, unknown>;
|
|
14
|
-
export type MyMultiLayout = MultiLayout<GranularRectLayout<unknown>, unknown>;
|
|
15
|
-
export interface CachedLayout {
|
|
16
|
-
layout: BaseMultiLayout;
|
|
17
|
-
props: LayoutSessionProps;
|
|
18
|
-
}
|
|
19
|
-
export interface LayoutSessionLike {
|
|
20
|
-
layout: BaseMultiLayout;
|
|
21
|
-
update(props: LayoutSessionProps): LayoutSessionLike;
|
|
22
|
-
}
|
|
23
|
-
export declare class LayoutSession implements LayoutSessionLike {
|
|
24
|
-
props: LayoutSessionProps;
|
|
25
|
-
cachedLayout: CachedLayout | undefined;
|
|
26
|
-
constructor(props: LayoutSessionProps);
|
|
27
|
-
update(props: LayoutSessionProps): this;
|
|
28
|
-
makeLayout(): MultiLayout<GranularRectLayout<unknown>, unknown>;
|
|
29
|
-
cachedLayoutIsValid(cachedLayout: CachedLayout): boolean;
|
|
30
|
-
get layout(): BaseMultiLayout;
|
|
31
|
-
}
|
|
@@ -1,40 +0,0 @@
|
|
|
1
|
-
import deepEqual from 'fast-deep-equal';
|
|
2
|
-
import { readConfObject } from "../../configuration/index.js";
|
|
3
|
-
import GranularRectLayout from "../../util/layouts/GranularRectLayout.js";
|
|
4
|
-
import MultiLayout from "../../util/layouts/MultiLayout.js";
|
|
5
|
-
export class LayoutSession {
|
|
6
|
-
props;
|
|
7
|
-
cachedLayout;
|
|
8
|
-
constructor(props) {
|
|
9
|
-
this.props = props;
|
|
10
|
-
}
|
|
11
|
-
update(props) {
|
|
12
|
-
this.props = props;
|
|
13
|
-
return this;
|
|
14
|
-
}
|
|
15
|
-
makeLayout() {
|
|
16
|
-
return new MultiLayout(GranularRectLayout, {
|
|
17
|
-
maxHeight: readConfObject(this.props.config, 'maxHeight'),
|
|
18
|
-
displayMode: readConfObject(this.props.config, 'displayMode'),
|
|
19
|
-
pitchX: this.props.bpPerPx,
|
|
20
|
-
pitchY: readConfObject(this.props.config, 'noSpacing') ? 1 : 3,
|
|
21
|
-
});
|
|
22
|
-
}
|
|
23
|
-
cachedLayoutIsValid(cachedLayout) {
|
|
24
|
-
const bpPerPxMatch = cachedLayout.props.bpPerPx === this.props.bpPerPx;
|
|
25
|
-
const currentConfig = readConfObject(this.props.config);
|
|
26
|
-
const cachedConfig = readConfObject(cachedLayout.props.config);
|
|
27
|
-
const configMatch = deepEqual(currentConfig, cachedConfig);
|
|
28
|
-
const filtersMatch = deepEqual(this.props.filters, cachedLayout.props.filters);
|
|
29
|
-
return bpPerPxMatch && configMatch && filtersMatch;
|
|
30
|
-
}
|
|
31
|
-
get layout() {
|
|
32
|
-
if (!this.cachedLayout || !this.cachedLayoutIsValid(this.cachedLayout)) {
|
|
33
|
-
this.cachedLayout = {
|
|
34
|
-
layout: this.makeLayout(),
|
|
35
|
-
props: this.props,
|
|
36
|
-
};
|
|
37
|
-
}
|
|
38
|
-
return this.cachedLayout.layout;
|
|
39
|
-
}
|
|
40
|
-
}
|
|
@@ -1,28 +0,0 @@
|
|
|
1
|
-
import type React from 'react';
|
|
2
|
-
import PluggableElementBase from '../PluggableElementBase.ts';
|
|
3
|
-
import type PluginManager from '../../PluginManager.ts';
|
|
4
|
-
import type { AnyConfigurationSchemaType } from '../../configuration/index.ts';
|
|
5
|
-
import type { AnyReactComponentType } from '../../util/index.ts';
|
|
6
|
-
import type { RpcResult } from '../../util/librpc.ts';
|
|
7
|
-
export type RenderProps = Record<string, unknown>;
|
|
8
|
-
export interface RenderResults {
|
|
9
|
-
reactElement?: React.ReactElement;
|
|
10
|
-
html?: string;
|
|
11
|
-
[key: string]: unknown;
|
|
12
|
-
}
|
|
13
|
-
export type RenderReturn = RenderResults | RpcResult;
|
|
14
|
-
export default class RendererType extends PluggableElementBase {
|
|
15
|
-
ReactComponent: AnyReactComponentType;
|
|
16
|
-
supportsSVG: boolean;
|
|
17
|
-
configSchema: AnyConfigurationSchemaType;
|
|
18
|
-
pluginManager: PluginManager;
|
|
19
|
-
constructor(stuff: {
|
|
20
|
-
name: string;
|
|
21
|
-
ReactComponent: AnyReactComponentType;
|
|
22
|
-
displayName?: string;
|
|
23
|
-
configSchema: AnyConfigurationSchemaType;
|
|
24
|
-
pluginManager: PluginManager;
|
|
25
|
-
});
|
|
26
|
-
render(props: RenderProps): Promise<RenderReturn>;
|
|
27
|
-
freeResources(_args: any): void;
|
|
28
|
-
}
|