@jbrowse/core 4.3.0 → 5.0.0-beta.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1994 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
- package/esm/BaseFeatureWidget/formatDetails.js +82 -0
- package/esm/BaseFeatureWidget/index.d.ts +4 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
- package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
- package/esm/BaseFeatureWidget/types.d.ts +15 -8
- package/esm/BaseFeatureWidget/util.d.ts +2 -37
- package/esm/BaseFeatureWidget/util.js +4 -85
- package/esm/CorePlugin.js +12 -7
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +55 -44
- package/esm/PluginLoader.js +290 -90
- package/esm/PluginManager.d.ts +476 -57
- package/esm/PluginManager.js +480 -91
- package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/coreModules.generated.d.ts +2 -0
- package/esm/ReExports/coreModules.generated.js +528 -0
- package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/coreWorkerModules.generated.js +488 -0
- package/esm/ReExports/frameworkModules.d.ts +2 -0
- package/esm/ReExports/frameworkModules.js +68 -0
- package/esm/ReExports/frameworkShared.d.ts +12 -0
- package/esm/ReExports/frameworkShared.js +16 -0
- package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +433 -160
- package/esm/ReExports/modules.d.ts +1 -1
- package/esm/ReExports/modules.js +10 -146
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/registry.d.ts +3 -0
- package/esm/ReExports/registry.js +46 -0
- package/esm/ReExports/uiStub.d.ts +3 -0
- package/esm/ReExports/uiStub.js +33 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +11 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +30 -36
- package/esm/TextSearch/TextSearchManager.js +138 -44
- package/esm/TextSearch/places.d.ts +12 -0
- package/esm/TextSearch/places.js +94 -0
- package/esm/assemblyManager/assembly.d.ts +310 -35
- package/esm/assemblyManager/assembly.js +554 -263
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +24 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
- package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
- package/esm/assemblyManager/assemblyManager.d.ts +586 -323
- package/esm/assemblyManager/assemblyManager.js +352 -51
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +44 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
- package/esm/assemblyManager/indexAssemblyNames.js +22 -0
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +75 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
- package/esm/assemblyManager/refNameMapKey.js +12 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +13 -0
- package/esm/checkPlugins.js +98 -0
- package/esm/configuration/bamIndexFields.d.ts +49 -0
- package/esm/configuration/bamIndexFields.js +41 -0
- package/esm/configuration/configurationSchema.d.ts +194 -29
- package/esm/configuration/configurationSchema.js +439 -145
- package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
- package/esm/configuration/configurationSchemaUnion.js +56 -0
- package/esm/configuration/configurationSlot.d.ts +373 -30
- package/esm/configuration/configurationSlot.js +231 -224
- package/esm/configuration/fillLocations.d.ts +14 -0
- package/esm/configuration/fillLocations.js +14 -0
- package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
- package/esm/configuration/formatDetailsConfigSchema.js +87 -0
- package/esm/configuration/fullConfSnapshot.d.ts +13 -0
- package/esm/configuration/fullConfSnapshot.js +44 -0
- package/esm/configuration/getConf.d.ts +92 -0
- package/esm/configuration/getConf.js +141 -0
- package/esm/configuration/index.d.ts +32 -3
- package/esm/configuration/index.js +27 -2
- package/esm/configuration/indexType.d.ts +26 -0
- package/esm/configuration/indexType.js +38 -0
- package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
- package/esm/configuration/mergeFormatCallbacks.js +27 -0
- package/esm/configuration/readConfObject.d.ts +34 -0
- package/esm/configuration/readConfObject.js +118 -0
- package/esm/configuration/requirements.d.ts +37 -0
- package/esm/configuration/requirements.js +88 -0
- package/esm/configuration/schemaRegistry.d.ts +52 -0
- package/esm/configuration/schemaRegistry.js +48 -0
- package/esm/configuration/schemaTypes.d.ts +39 -0
- package/esm/configuration/schemaTypes.js +105 -0
- package/esm/configuration/slotFacade.d.ts +65 -0
- package/esm/configuration/slotFacade.js +110 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/snapshotPreprocess.d.ts +43 -0
- package/esm/configuration/snapshotPreprocess.js +161 -0
- package/esm/configuration/tabixIndexFields.d.ts +70 -0
- package/esm/configuration/tabixIndexFields.js +62 -0
- package/esm/configuration/tabixShorthand.d.ts +51 -0
- package/esm/configuration/tabixShorthand.js +72 -0
- package/esm/configuration/types.d.ts +315 -13
- package/esm/configuration/uriShorthand.d.ts +9 -0
- package/esm/configuration/uriShorthand.js +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
- package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
- package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
- package/esm/data_adapters/dataAdapterCache.js +99 -25
- package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
- package/esm/pluggableElementTypes/DisplayType.js +30 -7
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
- package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
- package/esm/pluggableElementTypes/ViewType.js +40 -5
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
- package/esm/pluggableElementTypes/extendElementType.js +72 -0
- package/esm/pluggableElementTypes/index.d.ts +8 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +26 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +31 -17
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +142 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +215 -90
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +111 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +54 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +50 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +147 -0
- package/esm/pluggableElementTypes/models/index.d.ts +5 -3
- package/esm/pluggableElementTypes/models/index.js +9 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +48 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +114 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +10 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +272 -100
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
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- package/esm/util/useFetchPlugins.d.ts +16 -0
- package/esm/util/useFetchPlugins.js +18 -0
- package/esm/util/useMeasure.d.ts +11 -1
- package/esm/util/useMeasure.js +20 -6
- package/esm/util/usePanZoom.d.ts +75 -0
- package/esm/util/usePanZoom.js +175 -0
- package/esm/util/usePanelVirtualScroll.d.ts +9 -0
- package/esm/util/usePanelVirtualScroll.js +15 -0
- package/esm/util/usePointerDrag.d.ts +37 -0
- package/esm/util/usePointerDrag.js +61 -0
- package/esm/util/useRafCommit.d.ts +4 -0
- package/esm/util/useRafCommit.js +50 -0
- package/esm/util/useResizeDrag.d.ts +91 -0
- package/esm/util/useResizeDrag.js +105 -0
- package/esm/util/useRowVirtualScroll.d.ts +9 -0
- package/esm/util/useRowVirtualScroll.js +22 -0
- package/esm/util/useVirtualScrollWheel.d.ts +23 -0
- package/esm/util/useVirtualScrollWheel.js +74 -0
- package/esm/util/viewHighlights.d.ts +3 -0
- package/esm/util/viewHighlights.js +5 -0
- package/esm/util/viewStatus.d.ts +90 -0
- package/esm/util/viewStatus.js +54 -0
- package/esm/util/virtualRange.d.ts +36 -0
- package/esm/util/virtualRange.js +26 -0
- package/esm/util/webStorage.d.ts +26 -0
- package/esm/util/webStorage.js +92 -0
- package/esm/util/wheelZoom.d.ts +65 -0
- package/esm/util/wheelZoom.js +297 -0
- package/esm/util/whenViewSettled.d.ts +74 -0
- package/esm/util/whenViewSettled.js +77 -0
- package/esm/util/withFeatureDetails.d.ts +34 -0
- package/esm/util/withFeatureDetails.js +59 -0
- package/esm/util/withLaunchInput.d.ts +174 -0
- package/esm/util/withLaunchInput.js +274 -0
- package/package.json +290 -820
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
- package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
- package/esm/ReExports/BaseFeatureDetails.js +0 -9
- package/esm/ReExports/DataGrid.d.ts +0 -1
- package/esm/ReExports/DataGrid.js +0 -1
- package/esm/ReExports/index.d.ts +0 -1
- package/esm/ReExports/index.js +0 -1
- package/esm/configuration/util.d.ts +0 -10
- package/esm/configuration/util.js +0 -123
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
- package/esm/data_adapters/util.d.ts +0 -1
- package/esm/data_adapters/util.js +0 -6
- package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
- package/esm/pluggableElementTypes/GlyphType.js +0 -18
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
- package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
- package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
- package/esm/pluggableElementTypes/renderers/index.js +0 -6
- package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
- package/esm/pluggableElementTypes/renderers/util.js +0 -14
- package/esm/rpc/baseRpcConfig.d.ts +0 -8
- package/esm/rpc/baseRpcConfig.js +0 -10
- package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
- package/esm/rpc/mainThreadRpcConfig.js +0 -8
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
- package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
- package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
- package/esm/rpc/methods/CoreRender.d.ts +0 -14
- package/esm/rpc/methods/CoreRender.js +0 -40
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
- package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
- package/esm/rpc/methods/util.d.ts +0 -15
- package/esm/rpc/methods/util.js +0 -7
- package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
- package/esm/rpc/webWorkerRpcConfig.js +0 -8
- package/esm/ui/MenuButton.d.ts +0 -1
- package/esm/ui/MenuButton.js +0 -1
- package/esm/ui/MenuItems.d.ts +0 -15
- package/esm/ui/MenuItems.js +0 -59
- package/esm/ui/useEvent.d.ts +0 -1
- package/esm/ui/useEvent.js +0 -10
- package/esm/util/blobToDataURL.d.ts +0 -1
- package/esm/util/blobToDataURL.js +0 -14
- package/esm/util/compositeMap.d.ts +0 -11
- package/esm/util/compositeMap.js +0 -59
- package/esm/util/flatqueue/index.d.ts +0 -11
- package/esm/util/flatqueue/index.js +0 -61
- package/esm/util/layouts/BaseLayout.d.ts +0 -30
- package/esm/util/layouts/MultiLayout.d.ts +0 -12
- package/esm/util/layouts/MultiLayout.js +0 -40
- package/esm/util/layouts/PileupLayout.d.ts +0 -41
- package/esm/util/layouts/PileupLayout.js +0 -202
- package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/esm/util/layouts/PrecomputedLayout.js +0 -71
- package/esm/util/layouts/SceneGraph.d.ts +0 -31
- package/esm/util/layouts/SceneGraph.js +0 -121
- package/esm/util/makeAbortableReaction.d.ts +0 -3
- package/esm/util/makeAbortableReaction.js +0 -47
- package/esm/util/map-obj/index.d.ts +0 -13
- package/esm/util/map-obj/index.js +0 -92
- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/stopToken.d.ts +0 -19
- package/esm/util/stopToken.js +0 -90
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
- /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
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@@ -0,0 +1,17 @@
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import { jsx as _jsx } from "react/jsx-runtime";
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import { Tooltip } from '@mui/material';
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// Arrow tooltip above the thumb, used as SingleSlider's default value label so
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// every slider (inline track-menu rows, the settings menus' size submenus, the
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//
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// Unmounted while closed rather than rendered with `open={false}`. `open` is the
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// Slider's own hover/drag state (it passes `open === index || active === index`),
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// so nothing here is what detects the hover — a closed Tooltip only costs its
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// Popper. On the LGV zoom slider, whose value tracks live `bpPerPx`, that was a
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// Tooltip and a Popper re-rendering on every animation frame of a wheel zoom to
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// show nothing.
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export default function SliderTooltip(props) {
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const { children, open, value } = props;
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return open ? (_jsx(Tooltip, { open: true, enterTouchDelay: 0, placement: "top", title: value, arrow: true, children: children })) : (children);
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}
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package/esm/ui/Snackbar.d.ts
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import type { SnackbarMessage } from './SnackbarModel.tsx';
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import type { AbstractSessionModel } from '../util/index.ts';
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import type { ErrorDialogState, SnackbarMessage } from './SnackbarModel.tsx';
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interface SnackbarSession extends AbstractSessionModel {
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snackbarMessages: SnackbarMessage[];
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popSnackbarMessage: () => void;
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errorDialog: ErrorDialogState | undefined;
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setErrorDialog: (state: ErrorDialogState | undefined) => void;
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}
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declare const Snackbar: ({ session, }: {
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session: SnackbarSession;
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}) => import("react
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}) => import("react").JSX.Element;
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export default Snackbar;
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import { jsx as _jsx } from "react/jsx-runtime";
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import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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import { Suspense, lazy } from 'react';
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import { observer } from 'mobx-react';
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const SnackbarContents = lazy(() => import(
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const SnackbarContents = lazy(() => import('./SnackbarContents.js'));
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const ErrorMessageStackTraceDialog = lazy(() => import('./ErrorMessageStackTraceDialog.js'));
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const Snackbar = observer(function Snackbar({ session, }) {
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const { snackbarMessages } = session;
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const { snackbarMessages, errorDialog } = session;
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const latestMessage = snackbarMessages.at(-1);
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return latestMessage ? (_jsx(Suspense, { fallback: null, children: _jsx(SnackbarContents, { onClose: (_event, reason) => {
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return (_jsxs(_Fragment, { children: [latestMessage ? (_jsx(Suspense, { fallback: null, children: _jsx(SnackbarContents, { onClose: (_event, reason) => {
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if (reason !== 'clickaway') {
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session.popSnackbarMessage();
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}
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}, contents: latestMessage }) })) : null, errorDialog ? (_jsx(Suspense, { fallback: null, children: _jsx(ErrorMessageStackTraceDialog, { error: errorDialog.error, extra: errorDialog.extra, onClose: () => {
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session.setErrorDialog(undefined);
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} }) })) : null] }));
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export default Snackbar;
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export default function SnackbarContents({ onClose, contents, }: {
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onClose: (_event: unknown, reason?: string) => void;
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contents: SnackbarMessage;
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}): import("react
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}): import("react").JSX.Element;
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import {
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import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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import CloseIcon from '@mui/icons-material/Close';
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// Report icon is rendered here instead of in SnackbarModel to avoid storing
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// JSX in MobX observables, which causes Chrome-specific issues
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// See https://github.com/GMOD/jbrowse-components/issues/5325
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import Report from '@mui/icons-material/Report';
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import { Alert, Button, IconButton, Snackbar as MUISnackbar, } from '@mui/material';
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import { makeStyles } from '../util/tss-react/index.js';
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const useStyles = makeStyles()({
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// preserve newlines in multi-line errors (e.g. MST validation dumps) while
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// still wrapping long lines and capping height so the snackbar can't grow
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// off-screen
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message: {
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whiteSpace: 'pre-wrap',
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overflowWrap: 'anywhere',
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maxHeight: 200,
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},
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});
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export default function SnackbarContents({ onClose, contents, }) {
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const { classes } = useStyles();
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const { actions } = contents;
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return (_jsx(MUISnackbar, { open: true, onClose: onClose, anchorOrigin: { vertical: 'bottom', horizontal: 'center' }, children: _jsx(Alert, { onClose: onClose, action: actions?.length ? (_jsxs(_Fragment, { children: [actions.map((action, idx) => (_jsx(Button
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return (_jsx(MUISnackbar, { open: true, onClose: onClose, anchorOrigin: { vertical: 'bottom', horizontal: 'center' }, children: _jsx(Alert, { onClose: onClose, action: actions?.length ? (_jsxs(_Fragment, { children: [actions.map((action, idx) => (_jsx(Button
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// eslint-disable-next-line @eslint-react/no-array-index-key -- fixed, never-reordered list of snackbar action buttons
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, { color: "inherit", onClick: e => {
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action.onClick();
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onClose(e);
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}, children: action.name === 'report' ? _jsx(Report, {}) : action.name }, idx))), _jsx(IconButton, { color: "inherit", onClick: onClose, children: _jsx(CloseIcon, {}) })] })) : null, severity: contents.level || 'warning', children: contents.message }) }));
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}, children: action.name === 'report' ? _jsx(Report, {}) : action.name }, idx))), _jsx(IconButton, { color: "inherit", onClick: onClose, children: _jsx(CloseIcon, {}) })] })) : null, severity: contents.level || 'warning', "data-testid": `snackbar-${contents.level || 'warning'}`, children: _jsx("div", { className: classes.message, children: contents.message }) }) }));
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}
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@@ -4,14 +4,54 @@ export interface SnackbarMessage {
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level?: NotificationLevel;
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actions?: SnackAction[];
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}
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export interface ErrorDialogState {
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error: unknown;
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extra?: unknown;
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}
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/**
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* #stateModel SnackbarModel
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* #category session
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*/
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export default function SnackbarModel(): import("@jbrowse/mobx-state-tree").IModelType<{}, {
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/**
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* #volatile
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*/
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snackbarMessages: import("mobx").IObservableArray<SnackbarMessage>;
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/**
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* #volatile
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* the error currently shown in the stack-trace dialog. Kept off the
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* dialog queue so it can stack on top of an already-open dialog (e.g. the
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* one whose action raised the error) instead of waiting behind it
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*/
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errorDialog: ErrorDialogState | undefined;
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} & {
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/**
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* #getter
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*/
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readonly snackbarMessageSet: Map<string, SnackbarMessage>;
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} & {
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/**
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* #action
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*/
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notify(message: string, level?: NotificationLevel, action?: SnackAction | SnackAction[]): void;
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/**
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* #action
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*/
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notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: SnackAction): void;
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/**
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* #action
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*/
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setErrorDialog(state: ErrorDialogState | undefined): void;
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/**
|
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* #action
|
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47
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*/
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pushSnackbarMessage(message: string, level?: NotificationLevel, actions?: SnackAction[]): void;
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/**
|
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50
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* #action
|
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51
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*/
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15
52
|
popSnackbarMessage(): SnackbarMessage | undefined;
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/**
|
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|
+
* #action
|
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55
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+
*/
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16
56
|
removeSnackbarMessage(message: string): void;
|
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17
57
|
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
package/esm/ui/SnackbarModel.js
CHANGED
|
@@ -1,66 +1,110 @@
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-
import {
|
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2
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import { types } from '@jbrowse/mobx-state-tree';
|
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import { addDisposer, types } from '@jbrowse/mobx-state-tree';
|
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3
2
|
import { observable } from 'mobx';
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4
|
-
|
|
3
|
+
/**
|
|
4
|
+
* #stateModel SnackbarModel
|
|
5
|
+
* #category session
|
|
6
|
+
*/
|
|
5
7
|
export default function SnackbarModel() {
|
|
6
8
|
return types
|
|
7
9
|
.model({})
|
|
8
10
|
.volatile(() => ({
|
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11
|
+
/**
|
|
12
|
+
* #volatile
|
|
13
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+
*/
|
|
9
14
|
snackbarMessages: observable.array(),
|
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15
|
+
/**
|
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16
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+
* #volatile
|
|
17
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notifyError(errorMessage, error, extra, action) {
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self.errorDialog = state;
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*/
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popSnackbarMessage() {
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return self.snackbarMessages.pop();
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},
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/**
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*/
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removeSnackbarMessage(message) {
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|
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const element = self.snackbarMessageSet.get(message);
|
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if (element !== undefined) {
|
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self.snackbarMessages.remove(element);
|
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}
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},
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};
|
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});
|
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|
|
@@ -0,0 +1,16 @@
|
|
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1
|
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import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
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import { Suspense, lazy, useState } from 'react';
|
|
3
|
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import ReportIcon from '@mui/icons-material/Report';
|
|
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|
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import { IconButton, Tooltip } from '@mui/material';
|
|
5
|
+
const ErrorMessageStackTraceDialog = lazy(() => import('./ErrorMessageStackTraceDialog.js'));
|
|
6
|
+
// "Show stack trace" icon button that lazy-loads and opens the stack-trace
|
|
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|
+
// dialog. Shared by ErrorBanner and ErrorBar so the lazy import and open/close
|
|
8
|
+
// state live in one place.
|
|
9
|
+
export default function StackTraceButton({ error, color, }) {
|
|
10
|
+
const [showStack, setShowStack] = useState(false);
|
|
11
|
+
return (_jsxs(_Fragment, { children: [_jsx(Tooltip, { title: "Show stack trace", children: _jsx(IconButton, { color: color, onClick: () => {
|
|
12
|
+
setShowStack(true);
|
|
13
|
+
}, children: _jsx(ReportIcon, {}) }) }), showStack ? (_jsx(Suspense, { fallback: null, children: _jsx(ErrorMessageStackTraceDialog, { error: error, onClose: () => {
|
|
14
|
+
setShowStack(false);
|
|
15
|
+
} }) })) : null] }));
|
|
16
|
+
}
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* A progress bar driven by a completion fraction in [0,1]: determinate (filling
|
|
3
|
+
* to the fraction) when one is given, indeterminate when `undefined`. The single
|
|
4
|
+
* place that maps a fraction to determinate-vs-indeterminate, shared by every
|
|
5
|
+
* loading/clustering/diagonalize/refetch indicator. Callers with an
|
|
6
|
+
* {@link RpcStatus} pass `statusFraction(status)`.
|
|
7
|
+
*
|
|
8
|
+
* **Toolkit-free, and that is the point rather than a detail.** It was a MUI
|
|
9
|
+
* `LinearProgress`, and it is reached from `LoadingOverlay` — whose every other
|
|
10
|
+
* element is already a `makeStyles` span — so it was the one Material component
|
|
11
|
+
* that rendered on a page whose host had asked for none. That reaches further
|
|
12
|
+
* than it sounds: a comparative display's first load draws this through
|
|
13
|
+
* `ComparativeFetchStatus`, which then sat behind neither bring-your-own seam,
|
|
14
|
+
* so an embedder who mounted `DisplayUIProvider` got a `MuiLinearProgress`
|
|
15
|
+
* anyway. It was invisible to the examples site's MUI census for the ordinary
|
|
16
|
+
* reason a loading state is: the census runs once the page has settled. (That
|
|
17
|
+
* component goes through the seam now, so a host supplying their own overlays
|
|
18
|
+
* replaces this rather than restyling it — but it is still what JBrowse's own
|
|
19
|
+
* comparative loading draws.)
|
|
20
|
+
*
|
|
21
|
+
* **What that bought is the look, not the bytes.** `LoadingOverlay` one level up
|
|
22
|
+
* still imports `IconButton` and `Tooltip`, so Material UI is in that page's
|
|
23
|
+
* bundle either way — 42 first-party eager modules hold it on the synteny page.
|
|
24
|
+
* Nothing here is a step toward getting it out; EAGER_BUNDLE.md owns that and
|
|
25
|
+
* says what it needs.
|
|
26
|
+
*
|
|
27
|
+
* `makeStyles` hands it `JBrowseStyleTheme`, so it follows the app's palette in
|
|
28
|
+
* both modes exactly as the Material one did. Two guards keep it from drifting
|
|
29
|
+
* back: `muiFree.test.ts` traces its imports, which catches an `alpha()` reached
|
|
30
|
+
* two modules deep, and its own test asserts the rendered tree carries no `Mui*`
|
|
31
|
+
* class, which catches a Material component rendered directly.
|
|
32
|
+
*/
|
|
33
|
+
export default function StatusProgressBar({ fraction, className, style, }: {
|
|
34
|
+
fraction?: number;
|
|
35
|
+
className?: string;
|
|
36
|
+
style?: React.CSSProperties;
|
|
37
|
+
}): import("react").JSX.Element;
|
|
@@ -0,0 +1,76 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { cx, makeStyles } from '../util/tss-react/index.js';
|
|
3
|
+
import { indeterminateSweep } from './statusProgressKeyframes.js';
|
|
4
|
+
const HEIGHT = 4;
|
|
5
|
+
const useStyles = makeStyles()(theme => ({
|
|
6
|
+
track: {
|
|
7
|
+
position: 'relative',
|
|
8
|
+
overflow: 'hidden',
|
|
9
|
+
height: HEIGHT,
|
|
10
|
+
borderRadius: HEIGHT / 2,
|
|
11
|
+
// `color-mix` rather than MUI's `alpha`, which is the one import that would
|
|
12
|
+
// put this component back in the toolkit. Same idiom `plainChromeOverlays`
|
|
13
|
+
// uses, and it tints against the surface rather than compositing over
|
|
14
|
+
// whatever the bar happens to be drawn on.
|
|
15
|
+
background: `color-mix(in srgb, ${theme.palette.accent} 26%, transparent)`,
|
|
16
|
+
},
|
|
17
|
+
bar: {
|
|
18
|
+
position: 'absolute',
|
|
19
|
+
top: 0,
|
|
20
|
+
bottom: 0,
|
|
21
|
+
left: 0,
|
|
22
|
+
width: '100%',
|
|
23
|
+
background: theme.palette.accent,
|
|
24
|
+
// scaled from the left rather than sized, so a progress update is a
|
|
25
|
+
// compositor transform instead of a layout
|
|
26
|
+
transformOrigin: 'left center',
|
|
27
|
+
transition: 'transform 200ms linear',
|
|
28
|
+
},
|
|
29
|
+
sweep: {
|
|
30
|
+
width: '40%',
|
|
31
|
+
transition: 'none',
|
|
32
|
+
animation: `${indeterminateSweep} 1.6s infinite linear`,
|
|
33
|
+
},
|
|
34
|
+
}));
|
|
35
|
+
/**
|
|
36
|
+
* A progress bar driven by a completion fraction in [0,1]: determinate (filling
|
|
37
|
+
* to the fraction) when one is given, indeterminate when `undefined`. The single
|
|
38
|
+
* place that maps a fraction to determinate-vs-indeterminate, shared by every
|
|
39
|
+
* loading/clustering/diagonalize/refetch indicator. Callers with an
|
|
40
|
+
* {@link RpcStatus} pass `statusFraction(status)`.
|
|
41
|
+
*
|
|
42
|
+
* **Toolkit-free, and that is the point rather than a detail.** It was a MUI
|
|
43
|
+
* `LinearProgress`, and it is reached from `LoadingOverlay` — whose every other
|
|
44
|
+
* element is already a `makeStyles` span — so it was the one Material component
|
|
45
|
+
* that rendered on a page whose host had asked for none. That reaches further
|
|
46
|
+
* than it sounds: a comparative display's first load draws this through
|
|
47
|
+
* `ComparativeFetchStatus`, which then sat behind neither bring-your-own seam,
|
|
48
|
+
* so an embedder who mounted `DisplayUIProvider` got a `MuiLinearProgress`
|
|
49
|
+
* anyway. It was invisible to the examples site's MUI census for the ordinary
|
|
50
|
+
* reason a loading state is: the census runs once the page has settled. (That
|
|
51
|
+
* component goes through the seam now, so a host supplying their own overlays
|
|
52
|
+
* replaces this rather than restyling it — but it is still what JBrowse's own
|
|
53
|
+
* comparative loading draws.)
|
|
54
|
+
*
|
|
55
|
+
* **What that bought is the look, not the bytes.** `LoadingOverlay` one level up
|
|
56
|
+
* still imports `IconButton` and `Tooltip`, so Material UI is in that page's
|
|
57
|
+
* bundle either way — 42 first-party eager modules hold it on the synteny page.
|
|
58
|
+
* Nothing here is a step toward getting it out; EAGER_BUNDLE.md owns that and
|
|
59
|
+
* says what it needs.
|
|
60
|
+
*
|
|
61
|
+
* `makeStyles` hands it `JBrowseStyleTheme`, so it follows the app's palette in
|
|
62
|
+
* both modes exactly as the Material one did. Two guards keep it from drifting
|
|
63
|
+
* back: `muiFree.test.ts` traces its imports, which catches an `alpha()` reached
|
|
64
|
+
* two modules deep, and its own test asserts the rendered tree carries no `Mui*`
|
|
65
|
+
* class, which catches a Material component rendered directly.
|
|
66
|
+
*/
|
|
67
|
+
export default function StatusProgressBar({ fraction, className, style, }) {
|
|
68
|
+
const { classes } = useStyles();
|
|
69
|
+
const determinate = fraction !== undefined;
|
|
70
|
+
// one clamp for both halves. `statusFraction` clamps its own output, but a
|
|
71
|
+
// caller passing a fraction of its own does not — `CurrentJobCard` divides an
|
|
72
|
+
// external job's self-reported `progressPct` — and clamping the top alone let
|
|
73
|
+
// a negative announce a value below the `aria-valuemin` declared beside it.
|
|
74
|
+
const filled = Math.min(1, Math.max(0, fraction ?? 0));
|
|
75
|
+
return (_jsx("div", { className: cx(classes.track, className), style: style, role: "progressbar", "aria-valuemin": determinate ? 0 : undefined, "aria-valuemax": determinate ? 100 : undefined, "aria-valuenow": determinate ? Math.round(filled * 100) : undefined, children: _jsx("div", { className: cx(classes.bar, determinate ? undefined : classes.sweep), style: determinate ? { transform: `scaleX(${filled})` } : undefined }) }));
|
|
76
|
+
}
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
import type { Props as DialogComponentProps } from './Dialog.tsx';
|
|
2
|
+
import type { SubmitFormProps } from './SubmitForm.tsx';
|
|
3
|
+
export interface SubmitDialogProps extends Omit<DialogComponentProps, 'onSubmit' | 'onReset'>, Omit<SubmitFormProps, 'children'> {
|
|
4
|
+
}
|
|
5
|
+
declare const SubmitDialog: (props: SubmitDialogProps) => import("react").JSX.Element;
|
|
6
|
+
export default SubmitDialog;
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { observer } from 'mobx-react';
|
|
3
|
+
import Dialog from './Dialog.js';
|
|
4
|
+
import SubmitForm from './SubmitForm.js';
|
|
5
|
+
const SubmitDialog = observer(function SubmitDialog(props) {
|
|
6
|
+
const { onSubmit, onCancel, cancelText, submitText, submitDisabled, submitColor, submitStartIcon, onReset, resetText, actions, contentClassName, children, ...dialogProps } = props;
|
|
7
|
+
return (_jsx(Dialog, { onClose: onCancel, ...dialogProps, children: _jsx(SubmitForm, { onSubmit: onSubmit, onCancel: onCancel, cancelText: cancelText, submitText: submitText, submitDisabled: submitDisabled, submitColor: submitColor, submitStartIcon: submitStartIcon, onReset: onReset, resetText: resetText, actions: actions, contentClassName: contentClassName, children: children }) }));
|
|
8
|
+
});
|
|
9
|
+
export default SubmitDialog;
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
import type { ButtonProps } from '@mui/material';
|
|
2
|
+
import type { ReactNode } from 'react';
|
|
3
|
+
export interface SubmitFormProps {
|
|
4
|
+
onCancel: () => void;
|
|
5
|
+
onSubmit: () => void;
|
|
6
|
+
cancelText?: string;
|
|
7
|
+
submitText?: string;
|
|
8
|
+
submitDisabled?: boolean;
|
|
9
|
+
submitColor?: ButtonProps['color'];
|
|
10
|
+
submitStartIcon?: ReactNode;
|
|
11
|
+
onReset?: () => void;
|
|
12
|
+
resetText?: string;
|
|
13
|
+
actions?: ReactNode;
|
|
14
|
+
contentClassName?: string;
|
|
15
|
+
children?: ReactNode;
|
|
16
|
+
}
|
|
17
|
+
/**
|
|
18
|
+
* Content plus a Cancel/Submit footer, wrapped in a form so Enter submits.
|
|
19
|
+
* SubmitDialog is this with a Dialog around it; a dialog whose Dialog (and
|
|
20
|
+
* outer chrome) is shared across several tab panes uses this directly, so the
|
|
21
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* panes get the same keyboard behavior without each owning a Dialog.
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*/
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export default function SubmitForm({ onSubmit, onCancel, cancelText, submitText, submitDisabled, submitColor, submitStartIcon, onReset, resetText, actions, contentClassName, children, }: SubmitFormProps): import("react").JSX.Element;
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@@ -0,0 +1,23 @@
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1
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import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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import { Button, DialogActions, DialogContent } from '@mui/material';
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/**
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4
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* Content plus a Cancel/Submit footer, wrapped in a form so Enter submits.
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5
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* SubmitDialog is this with a Dialog around it; a dialog whose Dialog (and
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6
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* outer chrome) is shared across several tab panes uses this directly, so the
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7
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* panes get the same keyboard behavior without each owning a Dialog.
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8
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+
*/
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9
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export default function SubmitForm({ onSubmit, onCancel, cancelText = 'Cancel', submitText = 'Submit', submitDisabled = false, submitColor = 'primary', submitStartIcon, onReset, resetText = 'Restore default', actions, contentClassName, children, }) {
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return (_jsxs("form", { onSubmit: event => {
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event.preventDefault();
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if (!submitDisabled) {
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onSubmit();
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}
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}, children: [_jsx(DialogContent, { className: contentClassName, children: children }), _jsxs(DialogActions, { children: [_jsx(Button, { type: "button", color: "secondary", variant: "contained", onClick: () => {
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if (onReset) {
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onReset();
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}
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else {
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onCancel();
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}
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}, children: onReset ? resetText : cancelText }), actions, _jsx(Button, { type: "submit", color: submitColor, variant: "contained", disabled: submitDisabled, startIcon: submitStartIcon, children: submitText })] })] }));
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}
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import type { ColorLegendEntry } from './legendSpec.ts';
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2
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export type { ColorLegendEntry } from './legendSpec.ts';
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3
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+
export declare const LEGEND_ROW_HEIGHT = 14;
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4
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+
export declare const LEGEND_SWATCH = 10;
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5
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/**
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6
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* Horizontal space the LGV export reserves beside the plot for a display whose
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7
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* legend asked to sit off the plot (`LegendMixin.svgLegendWidth`): the widest
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8
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+
* row this draws for a ramp, plus a margin either side.
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9
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+
*/
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10
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+
export declare const LEGEND_SVG_GUTTER_WIDTH: number;
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11
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export default function SvgColorLegend({ entries, canvasWidth, x, maxHeight, testid, idPrefix, }: {
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entries: ColorLegendEntry[];
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13
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+
canvasWidth: number;
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14
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+
x?: number;
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15
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+
maxHeight?: number;
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16
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+
idPrefix?: string;
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+
testid?: string;
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18
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+
}): import("react").JSX.Element | null;
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