@jbrowse/core 4.3.0 → 5.0.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1265) hide show
  1. package/README.md +1994 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
  37. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
  38. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  39. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
  40. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
  41. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  97. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  98. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  99. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  100. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  101. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  102. package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
  103. package/esm/BaseFeatureWidget/formatDetails.js +82 -0
  104. package/esm/BaseFeatureWidget/index.d.ts +4 -1
  105. package/esm/BaseFeatureWidget/index.js +2 -2
  106. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
  107. package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
  108. package/esm/BaseFeatureWidget/types.d.ts +15 -8
  109. package/esm/BaseFeatureWidget/util.d.ts +2 -37
  110. package/esm/BaseFeatureWidget/util.js +4 -85
  111. package/esm/CorePlugin.js +12 -7
  112. package/esm/PhasedScheduler.d.ts +4 -2
  113. package/esm/PhasedScheduler.js +18 -2
  114. package/esm/Plugin.d.ts +6 -1
  115. package/esm/Plugin.js +7 -0
  116. package/esm/PluginLoader.d.ts +55 -44
  117. package/esm/PluginLoader.js +290 -90
  118. package/esm/PluginManager.d.ts +476 -57
  119. package/esm/PluginManager.js +480 -91
  120. package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
  121. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  122. package/esm/ReExports/MuiReExports.d.ts +3 -134
  123. package/esm/ReExports/MuiReExports.js +43 -16
  124. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  125. package/esm/ReExports/MuiStylesReExports.js +55 -0
  126. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  127. package/esm/ReExports/coreModules.generated.js +528 -0
  128. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  129. package/esm/ReExports/coreWorkerModules.generated.js +488 -0
  130. package/esm/ReExports/frameworkModules.d.ts +2 -0
  131. package/esm/ReExports/frameworkModules.js +68 -0
  132. package/esm/ReExports/frameworkShared.d.ts +12 -0
  133. package/esm/ReExports/frameworkShared.js +16 -0
  134. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  135. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  136. package/esm/ReExports/lazify.d.ts +2 -2
  137. package/esm/ReExports/lazify.js +16 -3
  138. package/esm/ReExports/list.js +433 -160
  139. package/esm/ReExports/modules.d.ts +1 -1
  140. package/esm/ReExports/modules.js +10 -146
  141. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  142. package/esm/ReExports/muiComponentNames.js +130 -0
  143. package/esm/ReExports/registry.d.ts +3 -0
  144. package/esm/ReExports/registry.js +46 -0
  145. package/esm/ReExports/uiStub.d.ts +3 -0
  146. package/esm/ReExports/uiStub.js +33 -0
  147. package/esm/ReExports/workerModules.d.ts +2 -0
  148. package/esm/ReExports/workerModules.js +11 -0
  149. package/esm/TextSearch/BaseResults.d.ts +20 -21
  150. package/esm/TextSearch/BaseResults.js +8 -33
  151. package/esm/TextSearch/TextSearchManager.d.ts +30 -36
  152. package/esm/TextSearch/TextSearchManager.js +138 -44
  153. package/esm/TextSearch/places.d.ts +12 -0
  154. package/esm/TextSearch/places.js +94 -0
  155. package/esm/assemblyManager/assembly.d.ts +310 -35
  156. package/esm/assemblyManager/assembly.js +554 -263
  157. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  158. package/esm/assemblyManager/assemblyAdapters.js +24 -0
  159. package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
  160. package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
  161. package/esm/assemblyManager/assemblyManager.d.ts +586 -323
  162. package/esm/assemblyManager/assemblyManager.js +352 -51
  163. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
  164. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
  165. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  166. package/esm/assemblyManager/geneticCodes.js +44 -0
  167. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
  168. package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
  169. package/esm/assemblyManager/index.d.ts +1 -1
  170. package/esm/assemblyManager/index.js +2 -2
  171. package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
  172. package/esm/assemblyManager/indexAssemblyNames.js +22 -0
  173. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  174. package/esm/assemblyManager/loadRefNameMap.js +75 -0
  175. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  176. package/esm/assemblyManager/refNameColors.js +32 -0
  177. package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
  178. package/esm/assemblyManager/refNameMapKey.js +12 -0
  179. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  180. package/esm/assemblyManager/refNameMaps.js +87 -0
  181. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  182. package/esm/assemblyManager/refNameMismatch.js +66 -0
  183. package/esm/checkPlugins.d.ts +13 -0
  184. package/esm/checkPlugins.js +98 -0
  185. package/esm/configuration/bamIndexFields.d.ts +49 -0
  186. package/esm/configuration/bamIndexFields.js +41 -0
  187. package/esm/configuration/configurationSchema.d.ts +194 -29
  188. package/esm/configuration/configurationSchema.js +439 -145
  189. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  190. package/esm/configuration/configurationSchemaUnion.js +56 -0
  191. package/esm/configuration/configurationSlot.d.ts +373 -30
  192. package/esm/configuration/configurationSlot.js +231 -224
  193. package/esm/configuration/fillLocations.d.ts +14 -0
  194. package/esm/configuration/fillLocations.js +14 -0
  195. package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
  196. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  197. package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
  198. package/esm/configuration/formatDetailsConfigSchema.js +87 -0
  199. package/esm/configuration/fullConfSnapshot.d.ts +13 -0
  200. package/esm/configuration/fullConfSnapshot.js +44 -0
  201. package/esm/configuration/getConf.d.ts +92 -0
  202. package/esm/configuration/getConf.js +141 -0
  203. package/esm/configuration/index.d.ts +32 -3
  204. package/esm/configuration/index.js +27 -2
  205. package/esm/configuration/indexType.d.ts +26 -0
  206. package/esm/configuration/indexType.js +38 -0
  207. package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
  208. package/esm/configuration/mergeFormatCallbacks.js +27 -0
  209. package/esm/configuration/readConfObject.d.ts +34 -0
  210. package/esm/configuration/readConfObject.js +118 -0
  211. package/esm/configuration/requirements.d.ts +37 -0
  212. package/esm/configuration/requirements.js +88 -0
  213. package/esm/configuration/schemaRegistry.d.ts +52 -0
  214. package/esm/configuration/schemaRegistry.js +48 -0
  215. package/esm/configuration/schemaTypes.d.ts +39 -0
  216. package/esm/configuration/schemaTypes.js +105 -0
  217. package/esm/configuration/slotFacade.d.ts +65 -0
  218. package/esm/configuration/slotFacade.js +110 -0
  219. package/esm/configuration/slotValueUtils.d.ts +17 -0
  220. package/esm/configuration/slotValueUtils.js +25 -0
  221. package/esm/configuration/snapshotPreprocess.d.ts +43 -0
  222. package/esm/configuration/snapshotPreprocess.js +161 -0
  223. package/esm/configuration/tabixIndexFields.d.ts +70 -0
  224. package/esm/configuration/tabixIndexFields.js +62 -0
  225. package/esm/configuration/tabixShorthand.d.ts +51 -0
  226. package/esm/configuration/tabixShorthand.js +72 -0
  227. package/esm/configuration/types.d.ts +315 -13
  228. package/esm/configuration/uriShorthand.d.ts +9 -0
  229. package/esm/configuration/uriShorthand.js +16 -0
  230. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
  231. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
  232. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
  233. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
  234. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  235. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  236. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  237. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  238. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  239. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  240. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
  241. package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
  242. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  243. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  244. package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
  245. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  246. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
  247. package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
  248. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  249. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  250. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
  251. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  252. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  253. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  254. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  255. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  256. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
  257. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
  258. package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
  259. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  260. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  261. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  262. package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
  263. package/esm/data_adapters/dataAdapterCache.js +99 -25
  264. package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
  265. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  266. package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
  267. package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
  268. package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
  269. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  270. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  271. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  272. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  273. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  274. package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
  275. package/esm/pluggableElementTypes/DisplayType.js +30 -7
  276. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  277. package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
  278. package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
  279. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
  280. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  281. package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
  282. package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
  283. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
  284. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  285. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  286. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  287. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  288. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  289. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  290. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  291. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  292. package/esm/pluggableElementTypes/TrackType.js +1 -1
  293. package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
  294. package/esm/pluggableElementTypes/ViewType.js +40 -5
  295. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  296. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  297. package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
  298. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  299. package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
  300. package/esm/pluggableElementTypes/extendElementType.js +72 -0
  301. package/esm/pluggableElementTypes/index.d.ts +8 -7
  302. package/esm/pluggableElementTypes/index.js +24 -14
  303. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
  304. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  305. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
  306. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
  307. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
  308. package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
  309. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
  310. package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
  311. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
  312. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  313. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
  314. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
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  1021. package/esm/util/revlist.js +14 -0
  1022. package/esm/util/rowStackGeometry.d.ts +66 -0
  1023. package/esm/util/rowStackGeometry.js +70 -0
  1024. package/esm/util/rpc.d.ts +16 -1
  1025. package/esm/util/rpc.js +12 -1
  1026. package/esm/util/rxjs.d.ts +30 -2
  1027. package/esm/util/rxjs.js +85 -10
  1028. package/esm/util/sameStrings.d.ts +16 -0
  1029. package/esm/util/sameStrings.js +20 -0
  1030. package/esm/util/samplesTsv.d.ts +49 -0
  1031. package/esm/util/samplesTsv.js +86 -0
  1032. package/esm/util/scheduleDetachedDestroy.d.ts +18 -0
  1033. package/esm/util/scheduleDetachedDestroy.js +24 -0
  1034. package/esm/util/scrollLatch.d.ts +5 -0
  1035. package/esm/util/scrollLatch.js +67 -0
  1036. package/esm/util/selectEncodedFeature.d.ts +16 -0
  1037. package/esm/util/selectEncodedFeature.js +34 -0
  1038. package/esm/util/selectNamedRegions.d.ts +136 -0
  1039. package/esm/util/selectNamedRegions.js +222 -0
  1040. package/esm/util/seqUtils.d.ts +17 -0
  1041. package/esm/util/seqUtils.js +80 -0
  1042. package/esm/util/sessionServices.d.ts +29 -0
  1043. package/esm/util/sessionServices.js +46 -0
  1044. package/esm/util/sessionSharing.d.ts +40 -0
  1045. package/esm/util/sessionSharing.js +154 -0
  1046. package/esm/util/sessionStorage.d.ts +1 -0
  1047. package/esm/util/sessionStorage.js +15 -0
  1048. package/esm/util/setStackTraceLimit.d.ts +6 -0
  1049. package/esm/util/setStackTraceLimit.js +20 -0
  1050. package/esm/util/shapeNameList.d.ts +2 -0
  1051. package/esm/util/shapeNameList.js +6 -0
  1052. package/esm/util/shapeNames.d.ts +7 -0
  1053. package/esm/util/shapeNames.js +11 -0
  1054. package/esm/util/simpleFeature.d.ts +111 -4
  1055. package/esm/util/simpleFeature.js +181 -29
  1056. package/esm/util/springAnimate.d.ts +20 -0
  1057. package/esm/util/springAnimate.js +80 -0
  1058. package/esm/util/starFusion.d.ts +26 -0
  1059. package/esm/util/starFusion.js +37 -0
  1060. package/esm/util/stats.d.ts +25 -2
  1061. package/esm/util/stats.js +39 -8
  1062. package/esm/util/stepTables.d.ts +82 -0
  1063. package/esm/util/stepTables.js +243 -0
  1064. package/esm/util/stringUtils.d.ts +5 -0
  1065. package/esm/util/stringUtils.js +34 -0
  1066. package/esm/util/svAlt.d.ts +145 -0
  1067. package/esm/util/svAlt.js +364 -0
  1068. package/esm/util/svgColorProps.d.ts +18 -0
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  1070. package/esm/util/systemColorScheme.d.ts +12 -0
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  1072. package/esm/util/tabix.d.ts +125 -0
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  1074. package/esm/util/tags.d.ts +2 -0
  1075. package/esm/util/tags.js +5 -0
  1076. package/esm/util/temporaryAssembly.d.ts +21 -0
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  1078. package/esm/util/thresholdScale.d.ts +91 -0
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  1080. package/esm/util/tickLabels.d.ts +36 -0
  1081. package/esm/util/tickLabels.js +45 -0
  1082. package/esm/util/timeGate.d.ts +25 -0
  1083. package/esm/util/timeGate.js +78 -0
  1084. package/esm/util/trackConfigDelta.d.ts +84 -0
  1085. package/esm/util/trackConfigDelta.js +206 -0
  1086. package/esm/util/tracks.d.ts +431 -30
  1087. package/esm/util/tracks.js +952 -185
  1088. package/esm/util/translateTranscript.d.ts +44 -0
  1089. package/esm/util/translateTranscript.js +102 -0
  1090. package/esm/util/tss-react/cssAndCx.js +11 -66
  1091. package/esm/util/tss-react/index.d.ts +11 -2
  1092. package/esm/util/tss-react/index.js +9 -2
  1093. package/esm/util/tss-react/makeStyles.js +7 -4
  1094. package/esm/util/tss-react/mergeClasses.js +1 -0
  1095. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  1096. package/esm/util/tss-react/tools/classnames.js +3 -0
  1097. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  1098. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  1099. package/esm/util/tss-react/types.d.ts +1 -1
  1100. package/esm/util/tss-react/types.js +1 -6
  1101. package/esm/util/types/ElementId.js +1 -1
  1102. package/esm/util/types/data.d.ts +73 -0
  1103. package/esm/util/types/data.js +41 -0
  1104. package/esm/util/types/index.d.ts +459 -121
  1105. package/esm/util/types/index.js +96 -64
  1106. package/esm/util/types/isAny.d.ts +11 -0
  1107. package/esm/util/types/isAny.js +1 -0
  1108. package/esm/util/types/mst.d.ts +74 -47
  1109. package/esm/util/types/mst.js +31 -22
  1110. package/esm/util/types/predicate.d.ts +9 -0
  1111. package/esm/util/types/predicate.js +1 -0
  1112. package/esm/util/types/renameIds.d.ts +1 -0
  1113. package/esm/util/types/renameIds.js +29 -0
  1114. package/esm/util/types/renderingServices.d.ts +16 -0
  1115. package/esm/util/types/renderingServices.js +1 -0
  1116. package/esm/util/types/services.d.ts +55 -0
  1117. package/esm/util/types/services.js +10 -0
  1118. package/esm/util/types/util.d.ts +8 -2
  1119. package/esm/util/unknownSnapshotKeys.d.ts +51 -0
  1120. package/esm/util/unknownSnapshotKeys.js +82 -0
  1121. package/esm/util/unzip.d.ts +1 -0
  1122. package/esm/util/unzip.js +6 -0
  1123. package/esm/util/useEventCallback.d.ts +1 -0
  1124. package/esm/util/useEventCallback.js +16 -0
  1125. package/esm/util/useFeatureSequence.d.ts +13 -7
  1126. package/esm/util/useFeatureSequence.js +55 -77
  1127. package/esm/util/useFetch.d.ts +55 -0
  1128. package/esm/util/useFetch.js +197 -0
  1129. package/esm/util/useFetchPlugins.d.ts +16 -0
  1130. package/esm/util/useFetchPlugins.js +18 -0
  1131. package/esm/util/useMeasure.d.ts +11 -1
  1132. package/esm/util/useMeasure.js +20 -6
  1133. package/esm/util/usePanZoom.d.ts +75 -0
  1134. package/esm/util/usePanZoom.js +175 -0
  1135. package/esm/util/usePanelVirtualScroll.d.ts +9 -0
  1136. package/esm/util/usePanelVirtualScroll.js +15 -0
  1137. package/esm/util/usePointerDrag.d.ts +37 -0
  1138. package/esm/util/usePointerDrag.js +61 -0
  1139. package/esm/util/useRafCommit.d.ts +4 -0
  1140. package/esm/util/useRafCommit.js +50 -0
  1141. package/esm/util/useResizeDrag.d.ts +91 -0
  1142. package/esm/util/useResizeDrag.js +105 -0
  1143. package/esm/util/useRowVirtualScroll.d.ts +9 -0
  1144. package/esm/util/useRowVirtualScroll.js +22 -0
  1145. package/esm/util/useVirtualScrollWheel.d.ts +23 -0
  1146. package/esm/util/useVirtualScrollWheel.js +74 -0
  1147. package/esm/util/viewHighlights.d.ts +3 -0
  1148. package/esm/util/viewHighlights.js +5 -0
  1149. package/esm/util/viewStatus.d.ts +90 -0
  1150. package/esm/util/viewStatus.js +54 -0
  1151. package/esm/util/virtualRange.d.ts +36 -0
  1152. package/esm/util/virtualRange.js +26 -0
  1153. package/esm/util/webStorage.d.ts +26 -0
  1154. package/esm/util/webStorage.js +92 -0
  1155. package/esm/util/wheelZoom.d.ts +65 -0
  1156. package/esm/util/wheelZoom.js +297 -0
  1157. package/esm/util/whenViewSettled.d.ts +74 -0
  1158. package/esm/util/whenViewSettled.js +77 -0
  1159. package/esm/util/withFeatureDetails.d.ts +34 -0
  1160. package/esm/util/withFeatureDetails.js +59 -0
  1161. package/esm/util/withLaunchInput.d.ts +174 -0
  1162. package/esm/util/withLaunchInput.js +274 -0
  1163. package/package.json +290 -820
  1164. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
  1165. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
  1166. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
  1167. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  1168. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
  1169. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  1170. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
  1171. package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
  1172. package/esm/ReExports/BaseFeatureDetails.js +0 -9
  1173. package/esm/ReExports/DataGrid.d.ts +0 -1
  1174. package/esm/ReExports/DataGrid.js +0 -1
  1175. package/esm/ReExports/index.d.ts +0 -1
  1176. package/esm/ReExports/index.js +0 -1
  1177. package/esm/configuration/util.d.ts +0 -10
  1178. package/esm/configuration/util.js +0 -123
  1179. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1180. package/esm/data_adapters/util.d.ts +0 -1
  1181. package/esm/data_adapters/util.js +0 -6
  1182. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1183. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1184. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1185. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1186. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1187. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1188. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1189. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1190. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1191. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1192. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1193. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1194. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1195. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1196. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1197. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1198. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1199. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1200. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1201. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1202. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1203. package/esm/rpc/baseRpcConfig.js +0 -10
  1204. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1205. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1206. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1207. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1208. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1209. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1210. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1211. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1212. package/esm/rpc/methods/CoreRender.d.ts +0 -14
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  1214. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1215. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1216. package/esm/rpc/methods/util.d.ts +0 -15
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  1218. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
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  1220. package/esm/ui/MenuButton.d.ts +0 -1
  1221. package/esm/ui/MenuButton.js +0 -1
  1222. package/esm/ui/MenuItems.d.ts +0 -15
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  1224. package/esm/ui/useEvent.d.ts +0 -1
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  1226. package/esm/util/blobToDataURL.d.ts +0 -1
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  1230. package/esm/util/flatqueue/index.d.ts +0 -11
  1231. package/esm/util/flatqueue/index.js +0 -61
  1232. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1233. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1234. package/esm/util/layouts/MultiLayout.js +0 -40
  1235. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1236. package/esm/util/layouts/PileupLayout.js +0 -202
  1237. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1238. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1239. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1240. package/esm/util/layouts/SceneGraph.js +0 -121
  1241. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1242. package/esm/util/makeAbortableReaction.js +0 -47
  1243. package/esm/util/map-obj/index.d.ts +0 -13
  1244. package/esm/util/map-obj/index.js +0 -92
  1245. package/esm/util/nextTick.d.ts +0 -1
  1246. package/esm/util/nextTick.js +0 -3
  1247. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1248. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1249. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1250. package/esm/util/offscreenCanvasUtils.js +0 -19
  1251. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1252. package/esm/util/renderToAbstractCanvas.js +0 -53
  1253. package/esm/util/stopToken.d.ts +0 -19
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  1255. package/esm/util/transferables.d.ts +0 -2
  1256. package/esm/util/transferables.js +0 -35
  1257. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1258. package/esm/util/tss-react/mui/index.js +0 -1
  1259. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1260. package/esm/util/tss-react/mui/mui.js +0 -5
  1261. package/esm/util/when.d.ts +0 -1
  1262. package/esm/util/when.js +0 -1
  1263. /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
  1264. /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
  1265. /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
@@ -1,28 +1,50 @@
1
1
  import { isModelType, isType, types } from '@jbrowse/mobx-state-tree';
2
- import CorePlugin from "./CorePlugin.js";
3
- import PhasedScheduler from "./PhasedScheduler.js";
4
- import ReExports from "./ReExports/index.js";
5
- import { ConfigurationSchema, isBareConfigurationSchemaType, } from "./configuration/index.js";
6
- import AdapterType from "./pluggableElementTypes/AdapterType.js";
7
- import AddTrackWorkflowType from "./pluggableElementTypes/AddTrackWorkflowType.js";
8
- import ConnectionType from "./pluggableElementTypes/ConnectionType.js";
9
- import DisplayType from "./pluggableElementTypes/DisplayType.js";
10
- import GlyphType from "./pluggableElementTypes/GlyphType.js";
11
- import InternetAccountType from "./pluggableElementTypes/InternetAccountType.js";
12
- import RpcMethodType from "./pluggableElementTypes/RpcMethodType.js";
13
- import TextSearchAdapterType from "./pluggableElementTypes/TextSearchAdapterType.js";
14
- import TrackType from "./pluggableElementTypes/TrackType.js";
15
- import ViewType from "./pluggableElementTypes/ViewType.js";
16
- import WidgetType from "./pluggableElementTypes/WidgetType.js";
17
- import RendererType from "./pluggableElementTypes/renderers/RendererType.js";
18
- import createJexlInstance from "./util/jexl.js";
2
+ import CorePlugin from './CorePlugin.js';
3
+ import PhasedScheduler from './PhasedScheduler.js';
4
+ import { getReExportRegistry } from './ReExports/registry.js';
5
+ import { ConfigurationSchema, isBareConfigurationSchemaType, } from './configuration/index.js';
6
+ import LazyStateModelElement from './pluggableElementTypes/LazyStateModelElement.js';
7
+ import createJexlInstance from './util/jexl.js';
8
+ import { expandLooseTrackConfig } from './util/tracks.js';
9
+ /**
10
+ * Every pluggable element group, in the order `elementCreationSchedule` builds
11
+ * them. The array is the declaration and the union is derived from it, so a
12
+ * consumer that has to visit every group — `pruneUnbuildableNodes` walking a
13
+ * session snapshot for containers of a pluggable union — enumerates them at
14
+ * runtime instead of keeping a second hand-written list that goes stale.
15
+ */
16
+ export const pluggableElementTypeGroups = [
17
+ 'adapter',
18
+ 'text search adapter',
19
+ 'display',
20
+ 'track',
21
+ 'connection',
22
+ 'view',
23
+ 'widget',
24
+ 'rpc method',
25
+ 'internet account',
26
+ 'add track workflow',
27
+ ];
28
+ function pluggableUnionName(groupName, fieldName) {
29
+ return `pluggable(${groupName} ${fieldName})`;
30
+ }
31
+ /**
32
+ * The group a `pluggableMstType(group, 'stateModel')` union holds, read off
33
+ * its name: with every member a lazy model not yet loaded, the union has no
34
+ * members to recognise it by.
35
+ */
36
+ export function pluggableStateModelGroup(type) {
37
+ return pluggableElementTypeGroups.find(group => type.name === pluggableUnionName(group, 'stateModel'));
38
+ }
39
+ function isUnloadedLazyElement(element) {
40
+ return element instanceof LazyStateModelElement && !element.isStateModelLoaded;
41
+ }
42
+ /** internal class that holds the info for a certain element type */
19
43
  class TypeRecord {
20
- typeName;
21
- baseClass;
22
44
  registeredTypes = {};
23
- constructor(typeName, baseClass) {
45
+ typeName;
46
+ constructor(typeName) {
24
47
  this.typeName = typeName;
25
- this.baseClass = baseClass;
26
48
  }
27
49
  add(name, t) {
28
50
  this.registeredTypes[name] = t;
@@ -30,44 +52,137 @@ class TypeRecord {
30
52
  has(name) {
31
53
  return name in this.registeredTypes;
32
54
  }
55
+ // The message a build with the wrong plugin set gets, and usually the ONLY
56
+ // one. The lookups that reach here are mostly registration-time and
57
+ // cross-plugin — `pm.getDisplayType('LinearAlignmentsDisplay')` from a track's
58
+ // install — so in an embedded product, whose consumer supplies the plugin
59
+ // array, this throw is what lands in `pluginManagerError` and replaces the
60
+ // whole app. Naming the missing type alone still leaves "which plugin" to
61
+ // guess, which is what the registered list answers: a build short one plugin
62
+ // is visibly short that plugin's group of names.
33
63
  get(name) {
34
- if (!this.has(name)) {
35
- throw new Error(`${this.typeName} '${name}' not found, perhaps its plugin is not loaded or its plugin has not added it.`);
64
+ const type = this.registeredTypes[name];
65
+ if (!type) {
66
+ throw new Error(`${this.typeName} '${name}' is not registered: a plugin providing it either failed to load or is not in this build's plugin list. Registered ${this.typeName}s: ${this.registeredNames()}`);
36
67
  }
37
- return this.registeredTypes[name];
68
+ return type;
69
+ }
70
+ registeredNames() {
71
+ const names = Object.keys(this.registeredTypes).sort();
72
+ if (names.length === 0) {
73
+ // distinguishable from "the plugin is missing", and a different bug: a
74
+ // getter called before createPluggableElements() sees every record empty
75
+ return 'none at all, so this ran before createPluggableElements()';
76
+ }
77
+ const shown = names.slice(0, 25);
78
+ const rest = names.length - shown.length;
79
+ return rest > 0 ? `${shown.join(', ')}, and ${rest} more` : shown.join(', ');
38
80
  }
39
81
  all() {
40
82
  return Object.values(this.registeredTypes);
41
83
  }
42
84
  }
85
+ /**
86
+ * Marks a component built by wrapping the one the extension point accumulated
87
+ * so far, so {@link PluginManager.evaluateComponentExtensionPoint} can tell
88
+ * composition (two plugins each wrapping, both still visible) from a genuine
89
+ * clobber (a second plugin discarding the first). Set by `wrapComponent`.
90
+ */
91
+ export const wrappedComponent = Symbol.for('jbrowse.wrappedComponent');
92
+ // a callback that forgets to return hands `undefined` to every later callback
93
+ // and to the producer, which is a silent no-op the author has no way to see —
94
+ // the accumulator survives instead, since "return what you were passed" is the
95
+ // documented way to opt out
96
+ function nextAccumulator(name, accumulator, result) {
97
+ let next = result;
98
+ if (result === undefined && accumulator !== undefined) {
99
+ console.warn(`a ${name} extension point callback returned undefined instead of the value it was passed, so its result was ignored`);
100
+ next = accumulator;
101
+ }
102
+ return next;
103
+ }
104
+ // a bare stack from minified plugin code names nothing, so say which point
105
+ function logCallbackError(name, error) {
106
+ console.error(`error in a ${name} extension point callback`, error);
107
+ }
108
+ /**
109
+ * Instantiate an application's bundled plugin list as `isCore` load records —
110
+ * what tells the plugin store these came with the bundle rather than being
111
+ * installed by the user, so `InstalledPluginsList` filters them out and the
112
+ * About widget lists them. Every product and every test harness builds its
113
+ * manager from one of these lists, and a harness that passed bare instances
114
+ * silently disagreed with the app it was testing.
115
+ */
116
+ export function corePluginRecords(plugins) {
117
+ return plugins.map(P => ({ plugin: new P(), metadata: { isCore: true } }));
118
+ }
43
119
  export default class PluginManager {
44
120
  plugins = [];
45
121
  jexl = createJexlInstance();
46
122
  pluginMetadata = {};
47
123
  runtimePluginDefinitions = [];
48
- elementCreationSchedule = new PhasedScheduler('glyph', 'renderer', 'adapter', 'text search adapter', 'display', 'track', 'connection', 'view', 'widget', 'rpc method', 'internet account', 'add track workflow');
49
- glyphTypes = new TypeRecord('GlyphType', GlyphType);
50
- rendererTypes = new TypeRecord('RendererType', RendererType);
51
- adapterTypes = new TypeRecord('AdapterType', AdapterType);
52
- textSearchAdapterTypes = new TypeRecord('TextSearchAdapterType', TextSearchAdapterType);
53
- trackTypes = new TypeRecord('TrackType', TrackType);
54
- displayTypes = new TypeRecord('DisplayType', DisplayType);
55
- connectionTypes = new TypeRecord('ConnectionType', ConnectionType);
56
- viewTypes = new TypeRecord('ViewType', ViewType);
57
- widgetTypes = new TypeRecord('WidgetType', WidgetType);
58
- rpcMethods = new TypeRecord('RpcMethodType', RpcMethodType);
59
- addTrackWidgets = new TypeRecord('AddTrackWorkflow', AddTrackWorkflowType);
60
- internetAccountTypes = new TypeRecord('InternetAccountType', InternetAccountType);
124
+ elementCreationSchedule = new PhasedScheduler(...pluggableElementTypeGroups);
125
+ pluggableElementsCreated = false;
126
+ adapterTypes = new TypeRecord('AdapterType');
127
+ textSearchAdapterTypes = new TypeRecord('TextSearchAdapterType');
128
+ trackTypes = new TypeRecord('TrackType');
129
+ displayTypes = new TypeRecord('DisplayType');
130
+ connectionTypes = new TypeRecord('ConnectionType');
131
+ viewTypes = new TypeRecord('ViewType');
132
+ widgetTypes = new TypeRecord('WidgetType');
133
+ rpcMethods = new TypeRecord('RpcMethodType');
134
+ addTrackWidgets = new TypeRecord('AddTrackWorkflow');
135
+ internetAccountTypes = new TypeRecord('InternetAccountType');
61
136
  configured = false;
62
137
  rootModel;
63
138
  extensionPoints = new Map();
139
+ // singular component points are re-evaluated on every render, so the
140
+ // clobber warning is emitted once per point per app
141
+ warnedClobber = new Set();
142
+ #trackConfigHydrationCache = new WeakMap();
143
+ /**
144
+ * The lazily-hydrated MST config node for one frozen track config, built by
145
+ * `build` on first ask and returned by identity after that.
146
+ * `configuration/configurationSchema.ts` is the only caller.
147
+ *
148
+ * `jbrowse.tracks` is `types.frozen` for large-tracklist performance, so a
149
+ * track config is a plain JS object until first referenced; hydrating it into
150
+ * an MST node is deferred to that read. MST's custom-reference `getValue` has
151
+ * no memoization of its own — it reruns on every property access — so without
152
+ * this, every read of `track.configuration` would fabricate a fresh,
153
+ * non-identical node. Keyed by schemaType (each track type's config schema is
154
+ * rebuilt fresh per PluginManager instance, see addTrackType) then by the
155
+ * frozen object, so a hit can only ever come from this same instance and this
156
+ * same track type. See ADR-031.
157
+ *
158
+ * The node is never mutated: admin edits replace the frozen entry (new
159
+ * identity drops the WeakMap entry), and a non-admin's edits go to a private
160
+ * session working copy, not here (ADR-032). Both levels are `WeakMap`s so
161
+ * entries collect normally — no manual invalidation needed, which is why this
162
+ * is a memo and not a cache with a lifecycle to expose.
163
+ */
164
+ hydratedTrackConfig(schemaType, frozen, build) {
165
+ let byFrozen = this.#trackConfigHydrationCache.get(schemaType);
166
+ if (!byFrozen) {
167
+ byFrozen = new WeakMap();
168
+ this.#trackConfigHydrationCache.set(schemaType, byFrozen);
169
+ }
170
+ let node = byFrozen.get(frozen);
171
+ if (!node) {
172
+ node = build();
173
+ byFrozen.set(frozen, node);
174
+ }
175
+ return node;
176
+ }
64
177
  constructor(initialPlugins = []) {
178
+ // add the core plugin
65
179
  this.addPlugin({
66
180
  plugin: new CorePlugin(),
67
181
  metadata: {
68
182
  isCore: true,
69
183
  },
70
184
  });
185
+ // add all the initial plugins
71
186
  for (const plugin of initialPlugins) {
72
187
  this.addPlugin(plugin);
73
188
  }
@@ -82,25 +197,19 @@ export default class PluginManager {
82
197
  return configurationSchemas;
83
198
  }
84
199
  pluginConfigurationUnnamespacedSchemas() {
85
- let configurationSchemas = {};
200
+ const configurationSchemas = {};
86
201
  for (const plugin of this.plugins) {
87
202
  if (plugin.configurationSchemaUnnamespaced) {
88
- configurationSchemas = {
89
- ...configurationSchemas,
90
- ...plugin.configurationSchemaUnnamespaced,
91
- };
203
+ Object.assign(configurationSchemas, plugin.configurationSchemaUnnamespaced);
92
204
  }
93
205
  }
94
206
  return configurationSchemas;
95
207
  }
96
208
  pluginConfigurationRootSchemas() {
97
- let configurationSchemas = {};
209
+ const configurationSchemas = {};
98
210
  for (const plugin of this.plugins) {
99
211
  if (plugin.rootConfigurationSchema) {
100
- configurationSchemas = {
101
- ...configurationSchemas,
102
- ...plugin.rootConfigurationSchema(this),
103
- };
212
+ Object.assign(configurationSchemas, plugin.rootConfigurationSchema(this));
104
213
  }
105
214
  }
106
215
  return configurationSchemas;
@@ -109,11 +218,29 @@ export default class PluginManager {
109
218
  if (this.configured) {
110
219
  throw new Error('JBrowse already configured, cannot add plugins');
111
220
  }
112
- const [plugin, metadata = {}] = 'install' in load && 'configure' in load
113
- ? [load, {}]
114
- : [load.plugin, load.metadata];
115
- if (this.plugins.includes(plugin)) {
116
- throw new Error('plugin already installed');
221
+ const [plugin, metadata] = 'plugin' in load
222
+ ? [load.plugin, load.metadata ?? {}]
223
+ : [load, {}];
224
+ // Refuse a second copy of the same plugin, matched by name rather than by
225
+ // object identity: the two copies of a plugin a product bundles AND a
226
+ // config names are different classes from different bundles, so an
227
+ // identity check never sees them.
228
+ //
229
+ // The pluggable-element registry has its own first-wins guard, but a
230
+ // plugin's install()/configure() side effects have none — appendToMenu is a
231
+ // plain push, so a second copy silently doubles that plugin's menu items.
232
+ // Enforcing it here means a product does not have to remember to drop the
233
+ // config entry for everything it vendors.
234
+ //
235
+ // Warn and skip rather than throw. A config naming a plugin some product
236
+ // bundles is a legitimate config — jbrowse.org's hub configs do exactly
237
+ // that, so Web (which bundles less than Desktop) still gets the plugin —
238
+ // and failing the whole session over it would be worse than the duplicate
239
+ // this prevents. First registration wins, which is the core copy, since
240
+ // core plugins are added before a config's.
241
+ if (this.plugins.some(p => p.name === plugin.name)) {
242
+ console.warn(`plugin ${plugin.name} is already installed, ignoring the second copy`);
243
+ return this;
117
244
  }
118
245
  this.pluginMetadata[plugin.name] = metadata;
119
246
  if ('definition' in load) {
@@ -129,10 +256,23 @@ export default class PluginManager {
129
256
  hasPlugin(name) {
130
257
  return this.getPlugin(name) !== undefined;
131
258
  }
259
+ removePlugin(pluginName) {
260
+ const plugin = this.getPlugin(pluginName);
261
+ if (!plugin) {
262
+ throw new Error(`Plugin '${pluginName}' not found`);
263
+ }
264
+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
265
+ plugin.uninstall?.(this);
266
+ this.plugins = this.plugins.filter(p => p.name !== pluginName);
267
+ delete this.pluginMetadata[pluginName];
268
+ return this;
269
+ }
132
270
  createPluggableElements() {
133
- if (this.elementCreationSchedule) {
271
+ // run the creation callbacks for each element type in order.
272
+ // see elementCreationSchedule above for the creation order
273
+ if (!this.pluggableElementsCreated) {
134
274
  this.elementCreationSchedule.run();
135
- this.elementCreationSchedule = undefined;
275
+ this.pluggableElementsCreated = true;
136
276
  }
137
277
  return this;
138
278
  }
@@ -160,8 +300,6 @@ export default class PluginManager {
160
300
  return this.connectionTypes;
161
301
  case 'widget':
162
302
  return this.widgetTypes;
163
- case 'renderer':
164
- return this.rendererTypes;
165
303
  case 'display':
166
304
  return this.displayTypes;
167
305
  case 'track':
@@ -174,8 +312,6 @@ export default class PluginManager {
174
312
  return this.internetAccountTypes;
175
313
  case 'add track workflow':
176
314
  return this.addTrackWidgets;
177
- case 'glyph':
178
- return this.glyphTypes;
179
315
  default:
180
316
  throw new Error(`invalid element type '${groupName}'`);
181
317
  }
@@ -184,8 +320,11 @@ export default class PluginManager {
184
320
  if (typeof creationCallback !== 'function') {
185
321
  throw new Error('must provide a callback function that returns the new type object');
186
322
  }
323
+ if (this.pluggableElementsCreated) {
324
+ throw new Error(`Cannot add element type after createPluggableElements() has been called`);
325
+ }
187
326
  const typeRecord = this.getElementTypeRecord(groupName);
188
- this.elementCreationSchedule?.add(groupName, () => {
327
+ this.elementCreationSchedule.add(groupName, () => {
189
328
  const newElement = creationCallback(this);
190
329
  if (!newElement.name) {
191
330
  throw new Error(`cannot add a ${groupName} with no name`);
@@ -194,7 +333,28 @@ export default class PluginManager {
194
333
  console.warn(`${groupName} ${newElement.name} already registered, cannot register it again`);
195
334
  }
196
335
  else {
197
- typeRecord.add(newElement.name, this.evaluateExtensionPoint('Core-extendPluggableElement', newElement));
336
+ const extend = () => this.evaluateExtensionPoint(
337
+ /** #extensionPoint Core-extendPluggableElement | sync | Mutate any pluggable element after it is created */
338
+ 'Core-extendPluggableElement', newElement, { group: groupName });
339
+ // A lazily registered state model is not there for a callback to
340
+ // extend yet, so the point fires when the loader resolves instead.
341
+ // agent-docs/reference/EAGER_BUNDLE.md
342
+ if (isUnloadedLazyElement(newElement)) {
343
+ newElement.onStateModelLoaded = () => {
344
+ const extended = extend();
345
+ if (extended !== newElement) {
346
+ typeRecord.add(newElement.name, extended);
347
+ if (extended instanceof LazyStateModelElement &&
348
+ extended.isStateModelLoaded) {
349
+ newElement.stateModel = extended.stateModel;
350
+ }
351
+ }
352
+ };
353
+ typeRecord.add(newElement.name, newElement);
354
+ }
355
+ else {
356
+ typeRecord.add(newElement.name, extend());
357
+ }
198
358
  }
199
359
  });
200
360
  return this;
@@ -226,17 +386,43 @@ export default class PluginManager {
226
386
  getAdapterElements() {
227
387
  return this.getElementTypesInGroup('adapter');
228
388
  }
389
+ /**
390
+ * get a MST type for the union of all specified pluggable MST types.
391
+ * Membership is late-bound, so a lazily registered state model joins when
392
+ * its loader resolves; a snapshot naming one cannot be cast until then.
393
+ */
229
394
  pluggableMstType(groupName, fieldName, fallback = types.maybe(types.null)) {
230
- const pluggableTypes = this.getElementTypeRecord(groupName)
231
- .all()
232
- .map(t => t[fieldName])
233
- .filter(t => isType(t) && isModelType(t));
234
- if (pluggableTypes.length === 0 && typeof jest === 'undefined') {
235
- console.warn(`No pluggable types found matching ('${groupName}','${fieldName}')`);
395
+ const record = this.getElementTypeRecord(groupName);
396
+ const fieldOf = (t) => isUnloadedLazyElement(t)
397
+ ? undefined
398
+ : t[fieldName];
399
+ const anyMember = record.all().some(t => {
400
+ const field = fieldOf(t);
401
+ return ((isType(field) && isModelType(field)) ||
402
+ typeof t[`${fieldName}Loader`] === 'function');
403
+ });
404
+ if (!anyMember) {
236
405
  return fallback;
237
406
  }
238
- return types.union(...pluggableTypes);
407
+ const modelsOf = () => record
408
+ .all()
409
+ .map(t => fieldOf(t))
410
+ .filter(t => isType(t) && isModelType(t));
411
+ let members = modelsOf();
412
+ return types.union({
413
+ name: pluggableUnionName(groupName, fieldName),
414
+ members: () => {
415
+ if (members.length !== modelsOf().length) {
416
+ members = modelsOf();
417
+ }
418
+ return members;
419
+ },
420
+ });
239
421
  }
422
+ /**
423
+ * The union of every registered config schema of a pluggable element group,
424
+ * whose instance reads as a config node naming its `type`.
425
+ */
240
426
  pluggableConfigSchemaType(typeGroup, fieldName = 'configSchema') {
241
427
  const pluggableTypes = this.getElementTypeRecord(typeGroup)
242
428
  .all()
@@ -245,42 +431,68 @@ export default class PluginManager {
245
431
  if (pluggableTypes.length === 0) {
246
432
  pluggableTypes.push(ConfigurationSchema('Null', {}));
247
433
  }
248
- return types.union(...pluggableTypes);
434
+ // a union, not a model type: claiming model-ness here is what made a
435
+ // schema taking its base from this look concrete while its own slot reads
436
+ // had already degraded to `any` — see configuration/CLAUDE.md.
437
+ const union = types.union(...pluggableTypes);
438
+ // A track union dispatches on `type`, so the loose `{ trackId, uri }` form
439
+ // has to become a full config before the union sees it. Here rather than
440
+ // at each array that holds tracks, so a session track, a connection track
441
+ // and a direct `create` all take it.
442
+ return (typeGroup === 'track'
443
+ ? types.snapshotProcessor(union, {
444
+ preProcessor: (snap) => expandLooseTrackConfig(snap, this),
445
+ })
446
+ : union);
249
447
  }
250
448
  jbrequireCache = new Map();
251
- lib = ReExports;
449
+ // populated by PluginLoader once a runtime plugin is actually being loaded,
450
+ // which is the only thing that can call jbrequire — see ReExports/registry.ts
451
+ get lib() {
452
+ return getReExportRegistry();
453
+ }
252
454
  load = (lib) => {
253
455
  if (!this.jbrequireCache.has(lib)) {
254
456
  this.jbrequireCache.set(lib, lib(this));
255
457
  }
256
458
  return this.jbrequireCache.get(lib);
257
459
  };
460
+ /**
461
+ * Get the re-exported version of the given package name.
462
+ * Throws an error if the package is not re-exported by the plugin manager.
463
+ *
464
+ * @returns the library's default export
465
+ */
258
466
  jbrequire = (lib) => {
259
467
  if (typeof lib === 'string') {
260
468
  const pack = this.lib[lib];
261
469
  if (!pack) {
262
- throw new TypeError(`No jbrequire re-export defined for package '${lib}'. If this package must be shared between plugins, add it to ReExports.js. If it does not need to be shared, just import it normally.`);
470
+ throw new TypeError(`No jbrequire re-export defined for '${lib}'. The host serves what @jbrowse/core/ReExports/list names: the framework singletons, Material UI, and every subpath the bundled @jbrowse packages publish. Anything else, bundle into the plugin.`);
263
471
  }
264
472
  return pack;
265
473
  }
266
474
  else if (typeof lib === 'function') {
267
475
  return this.load(lib);
268
476
  }
477
+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
269
478
  else if (lib.default) {
270
479
  console.warn('initiated jbrequire on a {default:Function}');
271
480
  return this.jbrequire(lib.default);
272
481
  }
273
482
  throw new TypeError('lib passed to jbrequire must be either a string or a function');
274
483
  };
275
- getRendererType(typeName) {
276
- return this.rendererTypes.get(typeName);
277
- }
278
- getRendererTypes() {
279
- return this.rendererTypes.all();
280
- }
281
484
  getAdapterType(typeName) {
282
485
  return this.adapterTypes.get(typeName);
283
486
  }
487
+ /**
488
+ * Whether an adapter type is registered, for a caller walking a config where
489
+ * `type` names a track, a display and an adapter alike — `getAdapterType`
490
+ * throws on a miss, which is right when the name came from a config that
491
+ * claims to be an adapter and wrong when you are asking whether it is one.
492
+ */
493
+ hasAdapterType(typeName) {
494
+ return this.adapterTypes.has(typeName);
495
+ }
284
496
  getTextSearchAdapterType(typeName) {
285
497
  return this.textSearchAdapterTypes.get(typeName);
286
498
  }
@@ -293,6 +505,71 @@ export default class PluginManager {
293
505
  getViewType(typeName) {
294
506
  return this.viewTypes.get(typeName);
295
507
  }
508
+ /**
509
+ * The registered view and display types a snapshot names, from every `type`
510
+ * string anywhere in it — `heldForMissingPlugins` included. Over-collection
511
+ * is harmless: a name that resolves to neither is dropped here.
512
+ */
513
+ sessionElementTypes(sessionSnapshot) {
514
+ const names = new Set();
515
+ const walk = (node) => {
516
+ if (Array.isArray(node)) {
517
+ for (const item of node) {
518
+ walk(item);
519
+ }
520
+ }
521
+ else if (node && typeof node === 'object') {
522
+ for (const [key, value] of Object.entries(node)) {
523
+ if (key === 'type' && typeof value === 'string') {
524
+ names.add(value);
525
+ }
526
+ else {
527
+ walk(value);
528
+ }
529
+ }
530
+ }
531
+ };
532
+ walk(sessionSnapshot);
533
+ return [...names].flatMap(name => {
534
+ const display = this.resolveDisplayTypeRecord(name);
535
+ return [
536
+ ...(this.viewTypes.has(name) ? [this.getViewType(name)] : []),
537
+ ...(display ? [display] : []),
538
+ ];
539
+ });
540
+ }
541
+ /**
542
+ * Every async code path that hands a snapshot to a synchronous session
543
+ * instantiation (`setSession`, `cast`) must await this first.
544
+ */
545
+ async preloadSessionTypes(sessionSnapshot) {
546
+ await Promise.all(this.sessionElementTypes(sessionSnapshot).map(t => t.loadStateModel()));
547
+ }
548
+ unloadedSessionTypes(sessionSnapshot) {
549
+ return this.sessionElementTypes(sessionSnapshot)
550
+ .filter(t => !t.isStateModelLoaded)
551
+ .map(t => t.name);
552
+ }
553
+ /**
554
+ * Without this, a snapshot naming an unloaded lazy type fails inside MST as
555
+ * a union mismatch that reads like a corrupt snapshot.
556
+ */
557
+ assertSessionTypesLoaded(sessionSnapshot) {
558
+ const unloaded = this.unloadedSessionTypes(sessionSnapshot);
559
+ if (unloaded.length > 0) {
560
+ throw new Error(`session names lazily loaded types that are not loaded yet: ${unloaded.join(', ')}. Await pluginManager.preloadSessionTypes(snapshot) before setting the session`);
561
+ }
562
+ }
563
+ /**
564
+ * Aliases resolve here because a legacy session names the alias, and the
565
+ * model that remaps it cannot be consulted before it is loaded.
566
+ */
567
+ resolveDisplayTypeRecord(name) {
568
+ if (this.displayTypes.has(name)) {
569
+ return this.getDisplayType(name);
570
+ }
571
+ return this.getDisplayElements().find(d => d.aliases?.includes(name));
572
+ }
296
573
  getAddTrackWorkflow(typeName) {
297
574
  return this.addTrackWidgets.get(typeName);
298
575
  }
@@ -308,9 +585,6 @@ export default class PluginManager {
308
585
  getInternetAccountType(name) {
309
586
  return this.internetAccountTypes.get(name);
310
587
  }
311
- addRendererType(cb) {
312
- return this.addElementType('renderer', cb);
313
- }
314
588
  addAdapterType(cb) {
315
589
  return this.addElementType('adapter', cb);
316
590
  }
@@ -318,11 +592,14 @@ export default class PluginManager {
318
592
  return this.addElementType('text search adapter', cb);
319
593
  }
320
594
  addTrackType(cb) {
595
+ // Goes through the already-created displays and registers the ones that
596
+ // specify this track type
321
597
  const callback = () => {
322
598
  const track = cb(this);
323
599
  const displays = this.getElementTypesInGroup('display');
324
600
  for (const display of displays) {
325
- if (display.trackType === track.name &&
601
+ // track may have already added the displayType in its cb
602
+ if ([display.trackType].flat().includes(track.name) &&
326
603
  !track.displayTypes.includes(display)) {
327
604
  track.addDisplayType(display);
328
605
  }
@@ -339,6 +616,8 @@ export default class PluginManager {
339
616
  const newView = cb(this);
340
617
  const displays = this.getElementTypesInGroup('display');
341
618
  for (const display of displays) {
619
+ // view may have already added the displayType in its callback
620
+ // see ViewType for description of extendedName
342
621
  if ((display.viewType === newView.name ||
343
622
  display.viewType === newView.extendedName) &&
344
623
  !newView.displayTypes.includes(display)) {
@@ -364,16 +643,82 @@ export default class PluginManager {
364
643
  addAddTrackWorkflowType(cb) {
365
644
  return this.addElementType('add track workflow', cb);
366
645
  }
367
- addGlyphType(cb) {
368
- return this.addElementType('glyph', cb);
369
- }
370
- getGlyphType(typeName) {
371
- return this.glyphTypes.get(typeName);
646
+ /**
647
+ * Contribute entries to an accumulating point.
648
+ *
649
+ * The callback is handed only the props and returns what it wants to add —
650
+ * one entry, several, or `undefined` to add nothing. It never receives the
651
+ * array, which is the whole point: the concatenation happens here, once, so
652
+ * no plugin can write the `[MyEntry]` that silently drops every other
653
+ * plugin's entries. That mistake looked correct to whoever made it, because
654
+ * with one plugin registered there is nothing to drop.
655
+ */
656
+ contributeToExtensionPoint(extensionPointName, callback) {
657
+ this.pushExtensionPointCallback(extensionPointName, (entries, props) => {
658
+ const contributed = callback(props);
659
+ const accumulated = entries;
660
+ return contributed === undefined
661
+ ? accumulated
662
+ : [
663
+ ...accumulated,
664
+ ...(Array.isArray(contributed) ? contributed : [contributed]),
665
+ ];
666
+ });
372
667
  }
373
- getGlyphTypes() {
374
- return this.glyphTypes.all();
668
+ /**
669
+ * Listen to a notification point — one that carries its payload in `props`
670
+ * and whose return value nothing reads. The callback returns nothing;
671
+ * `addToExtensionPoint` rejects these names, so this is the only way in.
672
+ *
673
+ * The reason it is the only way in is the async join below, not the shorter
674
+ * callback. A handler that works asynchronously states so by returning a
675
+ * promise, and the producer waits on the folded value; written by hand
676
+ * through `addToExtensionPoint`, the second async handler's promise silently
677
+ * replaced the first's, so the producer stopped waiting as soon as the
678
+ * *last*-registered handler finished rather than when they all had. That is
679
+ * not a mistake a plugin author can see, which is why it is not left to them.
680
+ */
681
+ listenToExtensionPoint(extensionPointName, callback) {
682
+ this.pushExtensionPointCallback(extensionPointName, (extendee, props) => {
683
+ const ret = callback(props);
684
+ // An async handler is awaited — by evaluateAsyncExtensionPoint, or by a
685
+ // producer that checks the folded value for a thenable to learn when
686
+ // handlers have finished. A sync one passes through whatever an earlier
687
+ // handler left, so its promise is not dropped on the way past.
688
+ //
689
+ // Two async ones are joined rather than the later replacing the earlier;
690
+ // under the sync runner nothing awaits between callbacks. waitForAssembly
691
+ // is the producer that depends on it.
692
+ if (!(ret instanceof Promise)) {
693
+ return extendee;
694
+ }
695
+ return extendee instanceof Promise
696
+ ? Promise.all([extendee, ret]).then(() => undefined)
697
+ : ret.then(() => undefined);
698
+ });
375
699
  }
376
700
  addToExtensionPoint(extensionPointName, callback) {
701
+ this.pushExtensionPointCallback(extensionPointName, callback);
702
+ }
703
+ /**
704
+ * The one place a callback joins a point's chain. The three public
705
+ * registration methods go through this rather than through each other:
706
+ * `contributeToExtensionPoint` and `listenToExtensionPoint` register on exactly
707
+ * the point names their own signatures reject, so routing them via
708
+ * `addToExtensionPoint` would either fail to compile or force its guard to be
709
+ * loose enough to let a plugin do the same thing by hand.
710
+ */
711
+ pushExtensionPointCallback(extensionPointName, callback) {
712
+ // `Core-extendPluggableElement` fires once per element, inside
713
+ // createPluggableElements(). Registering after that run joins a fold that
714
+ // has already happened, so the extension never applies — the same mistake
715
+ // `addElementType` throws on, and the reason it throws: from `configure()`
716
+ // instead of `install()`, an extendViewType call compiles, runs, and
717
+ // silently extends nothing.
718
+ if (extensionPointName === 'Core-extendPluggableElement' &&
719
+ this.pluggableElementsCreated) {
720
+ throw new Error("Cannot register on Core-extendPluggableElement after createPluggableElements() has been called: the point has already fired for every element, so this callback would never run. Register it from a plugin's install(), not configure().");
721
+ }
377
722
  let callbacks = this.extensionPoints.get(extensionPointName);
378
723
  if (!callbacks) {
379
724
  callbacks = [];
@@ -387,28 +732,72 @@ export default class PluginManager {
387
732
  if (callbacks) {
388
733
  for (const callback of callbacks) {
389
734
  try {
390
- accumulator = callback(accumulator, props);
735
+ accumulator = nextAccumulator(extensionPointName, accumulator, callback(accumulator, props));
736
+ }
737
+ catch (error) {
738
+ logCallbackError(extensionPointName, error);
739
+ }
740
+ }
741
+ }
742
+ return accumulator;
743
+ }
744
+ evaluateComponentExtensionPoint(extensionPointName, extendee, props) {
745
+ const callbacks = this.extensionPoints.get(extensionPointName);
746
+ let accumulator = extendee;
747
+ let claims = 0;
748
+ if (callbacks) {
749
+ for (const callback of callbacks) {
750
+ try {
751
+ const result = nextAccumulator(extensionPointName, accumulator, callback(accumulator, props));
752
+ if (result !== accumulator &&
753
+ result?.[wrappedComponent] !== accumulator) {
754
+ claims++;
755
+ }
756
+ accumulator = result;
391
757
  }
392
758
  catch (error) {
393
- console.error(error);
759
+ logCallbackError(extensionPointName, error);
394
760
  }
395
761
  }
396
762
  }
763
+ if (claims > 1 && !this.warnedClobber.has(extensionPointName)) {
764
+ this.warnedClobber.add(extensionPointName);
765
+ console.warn(`more than one plugin replaced the ${extensionPointName} slot; only the last one registered is visible. Use a wrapper if the intent was to add to the default rather than replace it`);
766
+ }
397
767
  return accumulator;
398
768
  }
769
+ /**
770
+ * How many callbacks are registered on `extensionPointName`. For a caller
771
+ * that has to tell "every handler declined" apart from "nobody was
772
+ * listening" — the two look identical in the folded result, and
773
+ * assemblyManager waits out the first but not the second.
774
+ */
775
+ extensionPointCallbackCount(extensionPointName) {
776
+ return this.extensionPoints.get(extensionPointName)?.length ?? 0;
777
+ }
399
778
  async evaluateAsyncExtensionPoint(extensionPointName, extendee, props) {
400
779
  const callbacks = this.extensionPoints.get(extensionPointName);
401
780
  let accumulator = extendee;
402
781
  if (callbacks) {
403
782
  for (const callback of callbacks) {
404
783
  try {
405
- accumulator = await callback(accumulator, props);
784
+ accumulator = nextAccumulator(extensionPointName, accumulator, await callback(accumulator, props));
406
785
  }
407
786
  catch (error) {
408
- console.error(error);
787
+ logCallbackError(extensionPointName, error);
409
788
  }
410
789
  }
411
790
  }
412
791
  return accumulator;
413
792
  }
793
+ async evaluateAsyncExtensionPointStrict(extensionPointName, extendee, props) {
794
+ const callbacks = this.extensionPoints.get(extensionPointName);
795
+ let accumulator = extendee;
796
+ if (callbacks) {
797
+ for (const callback of callbacks) {
798
+ accumulator = nextAccumulator(extensionPointName, accumulator, await callback(accumulator, props));
799
+ }
800
+ }
801
+ return accumulator;
802
+ }
414
803
  }