@jbrowse/core 4.3.0 → 5.0.0-beta.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1994 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +14 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +36 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +10 -7
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +124 -21
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +12 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +19 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +18 -23
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +9 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +33 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +19 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +8 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +15 -20
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +50 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +9 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +35 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +62 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +69 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +22 -0
- package/esm/BaseFeatureWidget/formatDetails.js +82 -0
- package/esm/BaseFeatureWidget/index.d.ts +4 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +102 -71
- package/esm/BaseFeatureWidget/stateModelFactory.js +162 -63
- package/esm/BaseFeatureWidget/types.d.ts +15 -8
- package/esm/BaseFeatureWidget/util.d.ts +2 -37
- package/esm/BaseFeatureWidget/util.js +4 -85
- package/esm/CorePlugin.js +12 -7
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +55 -44
- package/esm/PluginLoader.js +290 -90
- package/esm/PluginManager.d.ts +476 -57
- package/esm/PluginManager.js +480 -91
- package/esm/ReExports/MuiDataGridReExports.d.ts +3 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/coreModules.generated.d.ts +2 -0
- package/esm/ReExports/coreModules.generated.js +528 -0
- package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/coreWorkerModules.generated.js +488 -0
- package/esm/ReExports/frameworkModules.d.ts +2 -0
- package/esm/ReExports/frameworkModules.js +68 -0
- package/esm/ReExports/frameworkShared.d.ts +12 -0
- package/esm/ReExports/frameworkShared.js +16 -0
- package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +433 -160
- package/esm/ReExports/modules.d.ts +1 -1
- package/esm/ReExports/modules.js +10 -146
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/registry.d.ts +3 -0
- package/esm/ReExports/registry.js +46 -0
- package/esm/ReExports/uiStub.d.ts +3 -0
- package/esm/ReExports/uiStub.js +33 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +11 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +30 -36
- package/esm/TextSearch/TextSearchManager.js +138 -44
- package/esm/TextSearch/places.d.ts +12 -0
- package/esm/TextSearch/places.js +94 -0
- package/esm/assemblyManager/assembly.d.ts +310 -35
- package/esm/assemblyManager/assembly.js +554 -263
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +24 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +135 -19
- package/esm/assemblyManager/assemblyConfigSchema.js +205 -23
- package/esm/assemblyManager/assemblyManager.d.ts +586 -323
- package/esm/assemblyManager/assemblyManager.js +352 -51
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +39 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +114 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +44 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +19 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +22 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
- package/esm/assemblyManager/indexAssemblyNames.js +22 -0
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +75 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
- package/esm/assemblyManager/refNameMapKey.js +12 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +13 -0
- package/esm/checkPlugins.js +98 -0
- package/esm/configuration/bamIndexFields.d.ts +49 -0
- package/esm/configuration/bamIndexFields.js +41 -0
- package/esm/configuration/configurationSchema.d.ts +194 -29
- package/esm/configuration/configurationSchema.js +439 -145
- package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
- package/esm/configuration/configurationSchemaUnion.js +56 -0
- package/esm/configuration/configurationSlot.d.ts +373 -30
- package/esm/configuration/configurationSlot.js +231 -224
- package/esm/configuration/fillLocations.d.ts +14 -0
- package/esm/configuration/fillLocations.js +14 -0
- package/esm/configuration/formatAboutConfigSchema.d.ts +41 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +54 -0
- package/esm/configuration/formatDetailsConfigSchema.js +87 -0
- package/esm/configuration/fullConfSnapshot.d.ts +13 -0
- package/esm/configuration/fullConfSnapshot.js +44 -0
- package/esm/configuration/getConf.d.ts +92 -0
- package/esm/configuration/getConf.js +141 -0
- package/esm/configuration/index.d.ts +32 -3
- package/esm/configuration/index.js +27 -2
- package/esm/configuration/indexType.d.ts +26 -0
- package/esm/configuration/indexType.js +38 -0
- package/esm/configuration/mergeFormatCallbacks.d.ts +14 -0
- package/esm/configuration/mergeFormatCallbacks.js +27 -0
- package/esm/configuration/readConfObject.d.ts +34 -0
- package/esm/configuration/readConfObject.js +118 -0
- package/esm/configuration/requirements.d.ts +37 -0
- package/esm/configuration/requirements.js +88 -0
- package/esm/configuration/schemaRegistry.d.ts +52 -0
- package/esm/configuration/schemaRegistry.js +48 -0
- package/esm/configuration/schemaTypes.d.ts +39 -0
- package/esm/configuration/schemaTypes.js +105 -0
- package/esm/configuration/slotFacade.d.ts +65 -0
- package/esm/configuration/slotFacade.js +110 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/snapshotPreprocess.d.ts +43 -0
- package/esm/configuration/snapshotPreprocess.js +161 -0
- package/esm/configuration/tabixIndexFields.d.ts +70 -0
- package/esm/configuration/tabixIndexFields.js +62 -0
- package/esm/configuration/tabixShorthand.d.ts +51 -0
- package/esm/configuration/tabixShorthand.js +72 -0
- package/esm/configuration/types.d.ts +315 -13
- package/esm/configuration/uriShorthand.d.ts +9 -0
- package/esm/configuration/uriShorthand.js +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +19 -11
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +19 -18
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +158 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +164 -29
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +28 -6
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
- package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -13
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +5 -5
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +34 -6
- package/esm/data_adapters/CytobandAdapter/configSchema.js +47 -17
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +53 -2
- package/esm/data_adapters/dataAdapterCache.js +99 -25
- package/esm/data_adapters/getFeatureAdapter.d.ts +24 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +19 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +42 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +57 -7
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +54 -14
- package/esm/pluggableElementTypes/DisplayType.js +30 -7
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
- package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +11 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +142 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +279 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +18 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +22 -5
- package/esm/pluggableElementTypes/ViewType.js +40 -5
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +88 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +29 -0
- package/esm/pluggableElementTypes/extendElementType.js +72 -0
- package/esm/pluggableElementTypes/index.d.ts +8 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +80 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +643 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +230 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +246 -37
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +416 -107
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +236 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +154 -16
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +169 -25
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +178 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +26 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +31 -17
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +142 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +215 -90
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +111 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +54 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +50 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +147 -0
- package/esm/pluggableElementTypes/models/index.d.ts +5 -3
- package/esm/pluggableElementTypes/models/index.js +9 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +48 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +114 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +10 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +272 -100
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
- package/esm/pluginDefinitions.d.ts +225 -0
- package/esm/pluginDefinitions.js +254 -0
- package/esm/rpc/BaseRpcDriver.d.ts +27 -35
- package/esm/rpc/BaseRpcDriver.js +68 -106
- package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
- package/esm/rpc/MainThreadRpcDriver.js +23 -29
- package/esm/rpc/RpcClient.d.ts +50 -0
- package/esm/rpc/RpcClient.js +189 -0
- package/esm/rpc/RpcManager.d.ts +120 -27
- package/esm/rpc/RpcManager.js +187 -50
- package/esm/rpc/RpcRegistry.d.ts +298 -0
- package/esm/rpc/RpcServer.d.ts +43 -0
- package/esm/rpc/RpcServer.js +242 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +78 -24
- package/esm/rpc/WebWorkerRpcDriver.js +311 -30
- package/esm/rpc/byteBudget.d.ts +64 -0
- package/esm/rpc/byteBudget.js +61 -0
- package/esm/rpc/configSchema.d.ts +13 -5
- package/esm/rpc/configSchema.js +40 -16
- package/esm/rpc/coreRpcMethods.d.ts +6 -5
- package/esm/rpc/coreRpcMethods.js +13 -12
- package/esm/rpc/explainTransferError.d.ts +35 -0
- package/esm/rpc/explainTransferError.js +158 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +19 -4
- package/esm/rpc/methods/CoreFreeResources.js +17 -6
- package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
- package/esm/rpc/methods/CoreGetEncodedFeature.js +32 -0
- package/esm/rpc/methods/CoreGetEncodedLayers.d.ts +16 -0
- package/esm/rpc/methods/CoreGetEncodedLayers.js +59 -0
- package/esm/rpc/methods/CoreGetExportData.d.ts +5 -18
- package/esm/rpc/methods/CoreGetExportData.js +25 -15
- package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +11 -0
- package/esm/rpc/methods/CoreGetFeatureDensity.js +22 -0
- package/esm/rpc/methods/CoreGetFeatures.d.ts +6 -15
- package/esm/rpc/methods/CoreGetFeatures.js +14 -18
- package/esm/rpc/methods/CoreGetInfo.d.ts +6 -0
- package/esm/rpc/methods/CoreGetInfo.js +12 -0
- package/esm/rpc/methods/CoreGetMetadata.d.ts +4 -7
- package/esm/rpc/methods/CoreGetMetadata.js +6 -9
- package/esm/rpc/methods/CoreGetRefNames.d.ts +4 -8
- package/esm/rpc/methods/CoreGetRefNames.js +16 -15
- package/esm/rpc/methods/CoreGetRegionByteEstimate.d.ts +6 -0
- package/esm/rpc/methods/CoreGetRegionByteEstimate.js +19 -0
- package/esm/rpc/methods/CoreGetRegions.d.ts +4 -6
- package/esm/rpc/methods/CoreGetRegions.js +6 -9
- package/esm/rpc/methods/CoreGetSequence.d.ts +4 -11
- package/esm/rpc/methods/CoreGetSequence.js +12 -13
- package/esm/rpc/methods/CoreLoadAdapterCode.d.ts +13 -0
- package/esm/rpc/methods/CoreLoadAdapterCode.js +16 -0
- package/esm/rpc/methods/layerFeatures.d.ts +33 -0
- package/esm/rpc/methods/layerFeatures.js +29 -0
- package/esm/rpc/serializeError/index.d.ts +9 -0
- package/esm/rpc/serializeError/index.js +86 -0
- package/esm/svg/SvgExport.d.ts +30 -0
- package/esm/svg/SvgExport.js +52 -0
- package/esm/svg/SvgThemeProviders.d.ts +12 -0
- package/esm/svg/SvgThemeProviders.js +15 -0
- package/esm/svg/constants.d.ts +1 -0
- package/esm/svg/constants.js +5 -0
- package/esm/svg/exportViewSvg.d.ts +28 -0
- package/esm/svg/exportViewSvg.js +13 -0
- package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
- package/esm/svg/normalizeSvgMarkup.js +99 -0
- package/esm/svg/saveSvgAsImage.d.ts +6 -0
- package/esm/svg/saveSvgAsImage.js +90 -0
- package/esm/svg/serializeSvg.d.ts +7 -0
- package/esm/svg/serializeSvg.js +11 -0
- package/esm/svg/svgId.d.ts +42 -0
- package/esm/svg/svgId.js +84 -0
- package/esm/svg/svgReady.d.ts +138 -0
- package/esm/svg/svgReady.js +165 -0
- package/esm/svg/trackNames.d.ts +29 -0
- package/esm/svg/trackNames.js +34 -0
- package/esm/svg/wrapSvgExport.d.ts +12 -0
- package/esm/svg/wrapSvgExport.js +10 -0
- package/esm/ui/ActionLink.d.ts +7 -0
- package/esm/ui/ActionLink.js +9 -0
- package/esm/ui/AddCustomPluginDialog.d.ts +14 -0
- package/esm/ui/AddCustomPluginDialog.js +56 -0
- package/esm/ui/AddGenomePane.d.ts +8 -0
- package/esm/ui/AddGenomePane.js +228 -0
- package/esm/ui/AdvancedOptions.d.ts +6 -0
- package/esm/ui/AdvancedOptions.js +17 -0
- package/esm/ui/AppLogo.d.ts +1 -1
- package/esm/ui/AppLogo.js +2 -2
- package/esm/ui/AppReadyMarker.d.ts +45 -0
- package/esm/ui/AppReadyMarker.js +89 -0
- package/esm/ui/AssemblySelector.d.ts +5 -8
- package/esm/ui/AssemblySelector.js +8 -26
- package/esm/ui/BaseExportSvgDialog.d.ts +16 -0
- package/esm/ui/BaseExportSvgDialog.js +84 -0
- package/esm/ui/BaseTooltip.d.ts +14 -3
- package/esm/ui/BaseTooltip.js +151 -34
- package/esm/ui/CascadingMenu.d.ts +9 -18
- package/esm/ui/CascadingMenu.js +446 -42
- package/esm/ui/CascadingMenuButton.d.ts +9 -11
- package/esm/ui/CascadingMenuButton.js +36 -18
- package/esm/ui/CascadingMenuHelpDialog.d.ts +2 -2
- package/esm/ui/CascadingMenuHelpDialog.js +4 -5
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +2 -1
- package/esm/ui/CascadingMenuHelpIconButton.js +18 -9
- package/esm/ui/ColorPicker.d.ts +6 -9
- package/esm/ui/ColorPicker.js +36 -39
- package/esm/ui/ConfirmDialog.d.ts +2 -9
- package/esm/ui/ConfirmDialog.js +6 -9
- package/esm/ui/ContextMenu.d.ts +50 -0
- package/esm/ui/ContextMenu.js +55 -0
- package/esm/ui/CopyToClipboardButton.d.ts +10 -0
- package/esm/ui/CopyToClipboardButton.js +14 -0
- package/esm/ui/Crosshairs.d.ts +10 -0
- package/esm/ui/Crosshairs.js +15 -0
- package/esm/ui/DOMPurifySanitizedHTML.d.ts +1 -1
- package/esm/ui/DOMPurifySanitizedHTML.js +5 -5
- package/esm/ui/DataGridFlexContainer.d.ts +9 -2
- package/esm/ui/DataGridFlexContainer.js +4 -3
- package/esm/ui/Dialog.d.ts +5 -2
- package/esm/ui/Dialog.js +35 -27
- package/esm/ui/DraggableDialog.d.ts +3 -3
- package/esm/ui/DraggableDialog.js +50 -12
- package/esm/ui/DropDownMenu.d.ts +4 -2
- package/esm/ui/DropDownMenu.js +6 -5
- package/esm/ui/EditableTypography.d.ts +3 -1
- package/esm/ui/EditableTypography.js +34 -26
- package/esm/ui/ErrorActions.d.ts +24 -0
- package/esm/ui/ErrorActions.js +20 -0
- package/esm/ui/ErrorBanner.d.ts +7 -0
- package/esm/ui/ErrorBanner.js +35 -0
- package/esm/ui/ErrorBar.d.ts +6 -0
- package/esm/ui/ErrorBar.js +35 -0
- package/esm/ui/ErrorBoundary.d.ts +29 -5
- package/esm/ui/ErrorBoundary.js +32 -2
- package/esm/ui/ErrorMessage.d.ts +2 -4
- package/esm/ui/ErrorMessage.js +17 -52
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +1 -1
- package/esm/ui/ErrorMessageStackTraceContents.js +5 -4
- package/esm/ui/ErrorMessageStackTraceDialog.d.ts +1 -1
- package/esm/ui/ErrorMessageStackTraceDialog.js +51 -96
- package/esm/ui/ErrorOverlay.d.ts +8 -0
- package/esm/ui/ErrorOverlay.js +5 -0
- package/esm/ui/ExportSvgDialog.d.ts +7 -0
- package/esm/ui/ExportSvgDialog.js +9 -0
- package/esm/ui/ExternalLink.d.ts +1 -1
- package/esm/ui/FactoryResetDialog.d.ts +1 -1
- package/esm/ui/FactoryResetDialog.js +6 -15
- package/esm/ui/FatalErrorDialog.d.ts +3 -2
- package/esm/ui/FatalErrorDialog.js +6 -5
- package/esm/ui/FileDropZone.d.ts +25 -0
- package/esm/ui/FileDropZone.js +129 -0
- package/esm/ui/FileSelector/FileSelector.d.ts +1 -1
- package/esm/ui/FileSelector/FileSelector.js +59 -30
- package/esm/ui/FileSelector/LocalFileChooser.d.ts +7 -2
- package/esm/ui/FileSelector/LocalFileChooser.js +61 -47
- package/esm/ui/FileSelector/LocationInput.d.ts +1 -1
- package/esm/ui/FileSelector/LocationInput.js +8 -12
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +5 -5
- package/esm/ui/FileSelector/SourceTypeSelector.js +9 -7
- package/esm/ui/FileSelector/UrlChooser.d.ts +1 -1
- package/esm/ui/FileSelector/UrlChooser.js +26 -2
- package/esm/ui/FileSelector/emptySourceType.d.ts +2 -0
- package/esm/ui/FileSelector/emptySourceType.js +14 -0
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +436 -64
- package/esm/ui/FileSelector/useInternetAccounts.js +13 -6
- package/esm/ui/FileSelector/util.d.ts +58 -3
- package/esm/ui/FileSelector/util.js +128 -11
- package/esm/ui/GpuFallbackButton.d.ts +12 -0
- package/esm/ui/GpuFallbackButton.js +20 -0
- package/esm/ui/HoverMenu.d.ts +11 -3
- package/esm/ui/HoverMenu.js +34 -9
- package/esm/ui/HoverTooltip.d.ts +27 -0
- package/esm/ui/HoverTooltip.js +24 -0
- package/esm/ui/Icons.d.ts +6 -4
- package/esm/ui/Icons.js +9 -0
- package/esm/ui/InfoDialog.d.ts +7 -0
- package/esm/ui/InfoDialog.js +16 -0
- package/esm/ui/InlineMenuControls.d.ts +6 -0
- package/esm/ui/InlineMenuControls.js +17 -0
- package/esm/ui/JexlFilterDialog.d.ts +26 -0
- package/esm/ui/JexlFilterDialog.js +167 -0
- package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
- package/esm/ui/JexlFilterRowEditors.js +90 -0
- package/esm/ui/LabeledCheckbox.d.ts +9 -0
- package/esm/ui/LabeledCheckbox.js +7 -0
- package/esm/ui/LazyBaseTooltip.d.ts +4 -0
- package/esm/ui/LazyBaseTooltip.js +9 -0
- package/esm/ui/LegendSwatchGlyph.d.ts +7 -0
- package/esm/ui/LegendSwatchGlyph.js +30 -0
- package/esm/ui/LoadingDots.d.ts +1 -0
- package/esm/ui/LoadingDots.js +30 -0
- package/esm/ui/LoadingEllipses.d.ts +17 -1
- package/esm/ui/LoadingEllipses.js +20 -29
- package/esm/ui/LoadingOverlay.d.ts +23 -0
- package/esm/ui/LoadingOverlay.js +139 -0
- package/esm/ui/LoadingProgress.d.ts +16 -0
- package/esm/ui/LoadingProgress.js +16 -0
- package/esm/ui/Logo.d.ts +2 -2
- package/esm/ui/Logo.js +23 -24
- package/esm/ui/Menu.js +1 -1
- package/esm/ui/MenuItemChevron.d.ts +3 -0
- package/esm/ui/MenuItemChevron.js +19 -0
- package/esm/ui/MenuItemEndDecoration.d.ts +4 -0
- package/esm/ui/MenuItemEndDecoration.js +28 -0
- package/esm/ui/MenuItemTrailing.d.ts +12 -0
- package/esm/ui/MenuItemTrailing.js +42 -0
- package/esm/ui/MenuTypes.d.ts +95 -5
- package/esm/ui/MenuTypes.js +16 -1
- package/esm/ui/MonospaceTextField.d.ts +10 -0
- package/esm/ui/MonospaceTextField.js +40 -0
- package/esm/ui/NumberTextField.d.ts +31 -0
- package/esm/ui/NumberTextField.js +33 -0
- package/esm/ui/PaletteContext.d.ts +90 -0
- package/esm/ui/PaletteContext.js +142 -0
- package/esm/ui/PluggableComponent.d.ts +10 -0
- package/esm/ui/PluggableComponent.js +19 -0
- package/esm/ui/PluggableComponents.d.ts +29 -0
- package/esm/ui/PluggableComponents.js +28 -0
- package/esm/ui/PluggableElements.d.ts +23 -0
- package/esm/ui/PluggableElements.js +24 -0
- package/esm/ui/PluginStoreCard.d.ts +17 -0
- package/esm/ui/PluginStoreCard.js +45 -0
- package/esm/ui/PopoverPicker.d.ts +6 -0
- package/esm/ui/PopoverPicker.js +25 -0
- package/esm/ui/PrerenderedCanvas.d.ts +1 -1
- package/esm/ui/PrerenderedCanvas.js +5 -4
- package/esm/ui/ProgressChip.d.ts +37 -0
- package/esm/ui/ProgressChip.js +66 -0
- package/esm/ui/RedErrorMessageBox.d.ts +1 -1
- package/esm/ui/RedErrorMessageBox.js +9 -3
- package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +5 -0
- package/esm/ui/RefNameAutocomplete/EndAdornment.js +31 -0
- package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -0
- package/esm/ui/RefNameAutocomplete/HelpDialog.js +7 -0
- package/esm/ui/RefNameAutocomplete/SearchOption.d.ts +13 -0
- package/esm/ui/RefNameAutocomplete/SearchOption.js +45 -0
- package/esm/ui/RefNameAutocomplete/index.d.ts +21 -0
- package/esm/ui/RefNameAutocomplete/index.js +84 -0
- package/esm/ui/RefNameAutocomplete/util.d.ts +62 -0
- package/esm/ui/RefNameAutocomplete/util.js +209 -0
- package/esm/ui/ReplaceCurrentViewButton.d.ts +19 -0
- package/esm/ui/ReplaceCurrentViewButton.js +22 -0
- package/esm/ui/ResizeHandle.d.ts +15 -7
- package/esm/ui/ResizeHandle.js +73 -53
- package/esm/ui/ReturnToImportFormDialog.d.ts +1 -1
- package/esm/ui/ReturnToImportFormDialog.js +7 -9
- package/esm/ui/SanitizedHTML.d.ts +6 -1
- package/esm/ui/SanitizedHTML.js +7 -47
- package/esm/ui/ScrollChrome.d.ts +13 -0
- package/esm/ui/ScrollChrome.js +11 -0
- package/esm/ui/ScrollEdgeShadow.d.ts +41 -0
- package/esm/ui/ScrollEdgeShadow.js +77 -0
- package/esm/ui/ScrollZoomToggle.d.ts +15 -0
- package/esm/ui/ScrollZoomToggle.js +75 -0
- package/esm/ui/SequenceAdapterInputs.d.ts +9 -0
- package/esm/ui/SequenceAdapterInputs.js +30 -0
- package/esm/ui/SessionJsonPanel.d.ts +3 -0
- package/esm/ui/SessionJsonPanel.js +14 -0
- package/esm/ui/SettingsChangesTable.d.ts +15 -0
- package/esm/ui/SettingsChangesTable.js +87 -0
- package/esm/ui/ShareLinkField.d.ts +4 -0
- package/esm/ui/ShareLinkField.js +15 -0
- package/esm/ui/SingleSlider.d.ts +8 -0
- package/esm/ui/SingleSlider.js +11 -0
- package/esm/ui/SizeSliderRow.d.ts +14 -0
- package/esm/ui/SizeSliderRow.js +48 -0
- package/esm/ui/SliderTooltip.d.ts +2 -0
- package/esm/ui/SliderTooltip.js +17 -0
- package/esm/ui/Snackbar.d.ts +4 -2
- package/esm/ui/Snackbar.js +11 -8
- package/esm/ui/SnackbarContents.d.ts +1 -1
- package/esm/ui/SnackbarContents.js +21 -3
- package/esm/ui/SnackbarModel.d.ts +40 -0
- package/esm/ui/SnackbarModel.js +96 -52
- package/esm/ui/StackTraceButton.d.ts +5 -0
- package/esm/ui/StackTraceButton.js +16 -0
- package/esm/ui/StatusProgressBar.d.ts +37 -0
- package/esm/ui/StatusProgressBar.js +76 -0
- package/esm/ui/SubmitDialog.d.ts +6 -0
- package/esm/ui/SubmitDialog.js +9 -0
- package/esm/ui/SubmitForm.d.ts +23 -0
- package/esm/ui/SubmitForm.js +23 -0
- package/esm/ui/SvgColorLegend.d.ts +18 -0
- package/esm/ui/SvgColorLegend.js +106 -0
- package/esm/ui/TagTextField.d.ts +40 -0
- package/esm/ui/TagTextField.js +32 -0
- package/esm/ui/VerticalScrollbar.d.ts +24 -0
- package/esm/ui/VerticalScrollbar.js +104 -0
- package/esm/ui/ViewLoadingScreen.d.ts +25 -0
- package/esm/ui/ViewLoadingScreen.js +52 -0
- package/esm/ui/addExtensionElement.d.ts +18 -0
- package/esm/ui/addExtensionElement.js +23 -0
- package/esm/ui/buildExtraTrackMenuItems.d.ts +22 -0
- package/esm/ui/buildExtraTrackMenuItems.js +14 -0
- package/esm/ui/colorScale.d.ts +92 -0
- package/esm/ui/colorScale.js +72 -0
- package/esm/ui/colorSwatchStyle.d.ts +9 -0
- package/esm/ui/colorSwatchStyle.js +11 -0
- package/esm/ui/colors.d.ts +125 -8
- package/esm/ui/colors.js +364 -1
- package/esm/ui/extensionSelectors.d.ts +38 -0
- package/esm/ui/extensionSelectors.js +49 -0
- package/esm/ui/filterMenuItems.d.ts +112 -0
- package/esm/ui/filterMenuItems.js +86 -0
- package/esm/ui/formatErrorStack.d.ts +1 -0
- package/esm/ui/formatErrorStack.js +56 -0
- package/esm/ui/gpuFallback.d.ts +33 -0
- package/esm/ui/gpuFallback.js +39 -0
- package/esm/ui/hoverBoxStyle.d.ts +23 -0
- package/esm/ui/hoverBoxStyle.js +28 -0
- package/esm/ui/index.d.ts +77 -5
- package/esm/ui/index.js +83 -20
- package/esm/ui/inlineMenuRowWidth.d.ts +1 -0
- package/esm/ui/inlineMenuRowWidth.js +8 -0
- package/esm/ui/launchTargetsMenuItem.d.ts +18 -0
- package/esm/ui/launchTargetsMenuItem.js +24 -0
- package/esm/ui/launchViewMenu.d.ts +4 -0
- package/esm/ui/launchViewMenu.js +46 -0
- package/esm/ui/legendMenuItem.d.ts +16 -0
- package/esm/ui/legendMenuItem.js +17 -0
- package/esm/ui/legendSpec.d.ts +69 -0
- package/esm/ui/legendSpec.js +69 -0
- package/esm/ui/loadingDotKeyframes.d.ts +18 -0
- package/esm/ui/loadingDotKeyframes.js +17 -0
- package/esm/ui/makeSizeMenu.d.ts +24 -0
- package/esm/ui/makeSizeMenu.js +58 -0
- package/esm/ui/mapStackTrace.d.ts +8 -0
- package/esm/ui/mapStackTrace.js +108 -0
- package/esm/ui/measureLegendText.d.ts +1 -0
- package/esm/ui/measureLegendText.js +8 -0
- package/esm/ui/menuItemAdornment.d.ts +22 -0
- package/esm/ui/menuItemAdornment.js +28 -0
- package/esm/ui/menuItems.d.ts +23 -0
- package/esm/ui/menuItems.js +21 -0
- package/esm/ui/menuLabels.d.ts +41 -0
- package/esm/ui/menuLabels.js +43 -0
- package/esm/ui/multiTrackMenuItems.d.ts +25 -0
- package/esm/ui/multiTrackMenuItems.js +15 -0
- package/esm/ui/palette.d.ts +561 -0
- package/esm/ui/palette.js +785 -0
- package/esm/ui/parseError.d.ts +4 -0
- package/esm/ui/parseError.js +18 -0
- package/esm/ui/persistentScrollbarStyle.d.ts +49 -0
- package/esm/ui/persistentScrollbarStyle.js +53 -0
- package/esm/ui/radioSubMenu.d.ts +33 -0
- package/esm/ui/radioSubMenu.js +32 -0
- package/esm/ui/react-colorful.js +5 -1
- package/esm/ui/replaceViewAction.d.ts +31 -0
- package/esm/ui/replaceViewAction.js +39 -0
- package/esm/ui/rewriteExternalAnchors.d.ts +1 -0
- package/esm/ui/rewriteExternalAnchors.js +8 -0
- package/esm/ui/scrollZoomLabels.d.ts +17 -0
- package/esm/ui/scrollZoomLabels.js +22 -0
- package/esm/ui/showSubMenu.d.ts +19 -0
- package/esm/ui/showSubMenu.js +30 -0
- package/esm/ui/sliderScale.d.ts +6 -0
- package/esm/ui/sliderScale.js +30 -0
- package/esm/ui/statusProgressKeyframes.d.ts +6 -0
- package/esm/ui/statusProgressKeyframes.js +14 -0
- package/esm/ui/stripStackTraceMessage.d.ts +1 -0
- package/esm/ui/stripStackTraceMessage.js +9 -0
- package/esm/ui/styleTheme.d.ts +158 -0
- package/esm/ui/styleTheme.js +115 -0
- package/esm/ui/submenuAim.d.ts +30 -0
- package/esm/ui/submenuAim.js +37 -0
- package/esm/ui/theme.d.ts +268 -30
- package/esm/ui/theme.js +250 -350
- package/esm/ui/toggleMenuItems.d.ts +42 -0
- package/esm/ui/toggleMenuItems.js +61 -0
- package/esm/ui/useAssemblySelection.d.ts +153 -0
- package/esm/ui/useAssemblySelection.js +54 -0
- package/esm/ui/useCoalescedPointer.d.ts +36 -0
- package/esm/ui/useCoalescedPointer.js +60 -0
- package/esm/ui/useCopyToClipboard.d.ts +15 -0
- package/esm/ui/useCopyToClipboard.js +41 -0
- package/esm/ui/useExportSvgPreference.d.ts +1 -0
- package/esm/ui/useExportSvgPreference.js +4 -0
- package/esm/ui/useMouseTracking.d.ts +71 -0
- package/esm/ui/useMouseTracking.js +179 -0
- package/esm/ui/useRecentLocations.d.ts +28 -0
- package/esm/ui/useRecentLocations.js +31 -0
- package/esm/ui/viewHeaderHeight.d.ts +1 -0
- package/esm/ui/viewHeaderHeight.js +1 -0
- package/esm/ui/wrapComponent.d.ts +47 -0
- package/esm/ui/wrapComponent.js +58 -0
- package/esm/ui/zIndexes.d.ts +28 -0
- package/esm/ui/zIndexes.js +38 -0
- package/esm/util/Base1DUtils.d.ts +207 -17
- package/esm/util/Base1DUtils.js +316 -173
- package/esm/util/Base1DViewModel.d.ts +99 -21
- package/esm/util/Base1DViewModel.js +151 -41
- package/esm/util/FileSaver/index.d.ts +1 -0
- package/esm/util/FileSaver/index.js +27 -0
- package/esm/util/IntervalTree.d.ts +18 -39
- package/esm/util/IntervalTree.js +63 -244
- package/esm/util/SvgCanvas.d.ts +83 -0
- package/esm/util/SvgCanvas.js +520 -0
- package/esm/util/TimeTraveller.d.ts +12 -0
- package/esm/util/TimeTraveller.js +130 -27
- package/esm/util/aborting.d.ts +56 -4
- package/esm/util/aborting.js +112 -25
- package/esm/util/adapterMetadata.d.ts +20 -0
- package/esm/util/adapterMetadata.js +40 -0
- package/esm/util/addAndShowTrack.d.ts +19 -0
- package/esm/util/addAndShowTrack.js +27 -0
- package/esm/util/addRelativeUris.d.ts +29 -0
- package/esm/util/addRelativeUris.js +78 -0
- package/esm/util/addTrackComponent.d.ts +72 -0
- package/esm/util/addTrackComponent.js +53 -0
- package/esm/util/addTrackFromWidget.d.ts +91 -0
- package/esm/util/addTrackFromWidget.js +91 -0
- package/esm/util/aggregateFieldName.d.ts +10 -0
- package/esm/util/aggregateFieldName.js +8 -0
- package/esm/util/analytics.d.ts +32 -3
- package/esm/util/analytics.js +135 -49
- package/esm/util/animationAllowed.d.ts +26 -0
- package/esm/util/animationAllowed.js +35 -0
- package/esm/util/applyRowResizeWheel.d.ts +15 -0
- package/esm/util/applyRowResizeWheel.js +23 -0
- package/esm/util/assemblyConfigUtils.d.ts +144 -0
- package/esm/util/assemblyConfigUtils.js +498 -0
- package/esm/util/bandHeight.d.ts +63 -0
- package/esm/util/bandHeight.js +85 -0
- package/esm/util/bandLayout.d.ts +51 -0
- package/esm/util/bandLayout.js +36 -0
- package/esm/util/bezierConnector.d.ts +15 -0
- package/esm/util/bezierConnector.js +101 -0
- package/esm/util/bgzfWorkerPool.d.ts +24 -0
- package/esm/util/bgzfWorkerPool.js +27 -0
- package/esm/util/binnedAggregate.d.ts +17 -0
- package/esm/util/binnedAggregate.js +275 -0
- package/esm/util/blockTypes.d.ts +64 -45
- package/esm/util/blockTypes.js +67 -74
- package/esm/util/bpUtils.d.ts +81 -0
- package/esm/util/bpUtils.js +103 -0
- package/esm/util/cacheBudgets.d.ts +55 -0
- package/esm/util/cacheBudgets.js +55 -0
- package/esm/util/cachedSetup.d.ts +51 -0
- package/esm/util/cachedSetup.js +87 -0
- package/esm/util/calculateDynamicBlocks.d.ts +5 -0
- package/esm/util/calculateDynamicBlocks.js +85 -82
- package/esm/util/calculateStaticBlocks.d.ts +2 -3
- package/esm/util/calculateStaticBlocks.js +48 -71
- package/esm/util/categoricalField.d.ts +56 -0
- package/esm/util/categoricalField.js +73 -0
- package/esm/util/chooseGridPitch.d.ts +9 -0
- package/esm/util/chooseGridPitch.js +31 -0
- package/esm/util/clampToContig.d.ts +43 -0
- package/esm/util/clampToContig.js +47 -0
- package/esm/util/cmpStr.d.ts +1 -0
- package/esm/util/cmpStr.js +7 -0
- package/esm/util/coarseStripHTML.js +2 -15
- package/esm/util/color/cssColorsLevel4.d.ts +1 -0
- package/esm/util/color/cssColorsLevel4.js +7 -2
- package/esm/util/color/index.d.ts +84 -3
- package/esm/util/color/index.js +197 -25
- package/esm/util/color-bits/bit.d.ts +4 -0
- package/esm/util/color-bits/bit.js +37 -0
- package/esm/util/color-bits/convert.d.ts +23 -0
- package/esm/util/color-bits/convert.js +294 -0
- package/esm/util/color-bits/core.d.ts +34 -0
- package/esm/util/color-bits/core.js +67 -0
- package/esm/util/color-bits/format.d.ts +24 -0
- package/esm/util/color-bits/format.js +82 -0
- package/esm/util/color-bits/functions.d.ts +33 -0
- package/esm/util/color-bits/functions.js +70 -0
- package/esm/util/color-bits/index.d.ts +5 -0
- package/esm/util/color-bits/index.js +4 -0
- package/esm/util/color-bits/parse.d.ts +17 -0
- package/esm/util/color-bits/parse.js +382 -0
- package/esm/util/colorBits.d.ts +39 -0
- package/esm/util/colorBits.js +155 -0
- package/esm/util/colorRamp.d.ts +81 -0
- package/esm/util/colorRamp.js +244 -0
- package/esm/util/colorScale.d.ts +156 -0
- package/esm/util/colorScale.js +243 -0
- package/esm/util/colorSchemes.d.ts +21 -0
- package/esm/util/colorSchemes.js +30 -0
- package/esm/util/colord.d.ts +8 -0
- package/esm/util/colord.js +43 -191
- package/esm/util/convertCodingSequenceToPeptides.d.ts +17 -3
- package/esm/util/convertCodingSequenceToPeptides.js +51 -4
- package/esm/util/copyText.d.ts +18 -0
- package/esm/util/copyText.js +30 -0
- package/esm/util/copyToClipboard.d.ts +4 -0
- package/esm/util/copyToClipboard.js +58 -0
- package/esm/util/createAbortRotation.d.ts +115 -0
- package/esm/util/createAbortRotation.js +116 -0
- package/esm/util/createSvgRasterCanvas.d.ts +17 -0
- package/esm/util/createSvgRasterCanvas.js +22 -0
- package/esm/util/crypto.d.ts +24 -0
- package/esm/util/crypto.js +85 -2
- package/esm/util/cssColorParse.d.ts +15 -0
- package/esm/util/cssColorParse.js +53 -0
- package/esm/util/dataGridUtils.d.ts +9 -0
- package/esm/util/dataGridUtils.js +36 -0
- package/esm/util/dedupe.js +1 -0
- package/esm/util/deepEqual.d.ts +8 -0
- package/esm/util/deepEqual.js +22 -0
- package/esm/util/deepMerge.d.ts +20 -0
- package/esm/util/deepMerge.js +44 -0
- package/esm/util/diagonalizeRegions.d.ts +22 -0
- package/esm/util/diagonalizeRegions.js +187 -0
- package/esm/util/environment.d.ts +4 -0
- package/esm/util/environment.js +43 -0
- package/esm/util/eventPoint.d.ts +32 -0
- package/esm/util/eventPoint.js +28 -0
- package/esm/util/expandLooseSearchIndex.d.ts +19 -0
- package/esm/util/expandLooseSearchIndex.js +29 -0
- package/esm/util/featureTable.d.ts +224 -0
- package/esm/util/featureTable.js +366 -0
- package/esm/util/featureTransforms.d.ts +80 -0
- package/esm/util/featureTransforms.js +1579 -0
- package/esm/util/featureTypes.d.ts +24 -0
- package/esm/util/featureTypes.js +35 -0
- package/esm/util/fetchAndMaybeUnzip.d.ts +6 -0
- package/esm/util/fetchAndMaybeUnzip.js +71 -0
- package/esm/util/fetchContext.d.ts +81 -0
- package/esm/util/fetchContext.js +59 -0
- package/esm/util/fetchHub.d.ts +17 -0
- package/esm/util/fetchHub.js +31 -0
- package/esm/util/fetchJson.d.ts +1 -0
- package/esm/util/fetchJson.js +7 -0
- package/esm/util/fetchPhases.d.ts +77 -0
- package/esm/util/fetchPhases.js +1 -0
- package/esm/util/fetchSeq.d.ts +4 -1
- package/esm/util/fetchSeq.js +18 -6
- package/esm/util/fieldReader.d.ts +17 -0
- package/esm/util/fieldReader.js +62 -0
- package/esm/util/fileHandleStore.d.ts +19 -2
- package/esm/util/fileHandleStore.js +95 -35
- package/esm/util/flatbush/index.d.ts +27 -6
- package/esm/util/flatbush/index.js +194 -218
- package/esm/util/formatBytes.d.ts +9 -0
- package/esm/util/formatBytes.js +18 -0
- package/esm/util/formatFastaStrings.d.ts +13 -0
- package/esm/util/formatFastaStrings.js +13 -0
- package/esm/util/formatGuessers.d.ts +30 -0
- package/esm/util/formatGuessers.js +69 -0
- package/esm/util/formatRelativeTime.d.ts +1 -0
- package/esm/util/formatRelativeTime.js +25 -0
- package/esm/util/frameCoalescer.d.ts +30 -0
- package/esm/util/frameCoalescer.js +22 -0
- package/esm/util/freezeDeep.d.ts +26 -0
- package/esm/util/freezeDeep.js +39 -0
- package/esm/util/geneticCodes.d.ts +56 -0
- package/esm/util/geneticCodes.js +371 -0
- package/esm/util/getFileName.d.ts +11 -0
- package/esm/util/getFileName.js +34 -0
- package/esm/util/getLocationUri.d.ts +49 -0
- package/esm/util/getLocationUri.js +63 -0
- package/esm/util/getRelativeX.d.ts +4 -0
- package/esm/util/getRelativeX.js +7 -0
- package/esm/util/getStr.d.ts +6 -0
- package/esm/util/getStr.js +15 -0
- package/esm/util/groupKeys.d.ts +77 -0
- package/esm/util/groupKeys.js +155 -0
- package/esm/util/highlights.d.ts +25 -0
- package/esm/util/highlights.js +87 -0
- package/esm/util/hooks.d.ts +189 -0
- package/esm/util/hooks.js +485 -0
- package/esm/util/htmlText.d.ts +13 -0
- package/esm/util/htmlText.js +66 -0
- package/esm/util/idMaker.d.ts +1 -1
- package/esm/util/idMaker.js +31 -18
- package/esm/util/index.d.ts +82 -268
- package/esm/util/index.js +137 -853
- package/esm/util/indexCandidates.d.ts +20 -0
- package/esm/util/indexCandidates.js +43 -0
- package/esm/util/installClearHoverOnSurfaceMove.d.ts +40 -0
- package/esm/util/installClearHoverOnSurfaceMove.js +41 -0
- package/esm/util/installFetch.d.ts +234 -0
- package/esm/util/installFetch.js +205 -0
- package/esm/util/installInitAutorun.d.ts +63 -0
- package/esm/util/installInitAutorun.js +107 -0
- package/esm/util/installPrerequisiteFetch.d.ts +115 -0
- package/esm/util/installPrerequisiteFetch.js +111 -0
- package/esm/util/intervals.d.ts +20 -0
- package/esm/util/intervals.js +37 -0
- package/esm/util/io/RemoteFileWithRangeCache.d.ts +10 -11
- package/esm/util/io/RemoteFileWithRangeCache.js +10 -148
- package/esm/util/io/index.d.ts +39 -2
- package/esm/util/io/index.js +120 -12
- package/esm/util/isDataCurrent.d.ts +9 -0
- package/esm/util/isDataCurrent.js +12 -0
- package/esm/util/isTextEntryFocused.d.ts +7 -0
- package/esm/util/isTextEntryFocused.js +16 -0
- package/esm/util/isWebWorker.js +1 -2
- package/esm/util/iupac.d.ts +4 -0
- package/esm/util/iupac.js +59 -0
- package/esm/util/jexl.js +146 -19
- package/esm/util/jexlFilterRows.d.ts +89 -0
- package/esm/util/jexlFilterRows.js +252 -0
- package/esm/util/jexlFilters.d.ts +68 -0
- package/esm/util/jexlFilters.js +61 -0
- package/esm/util/jexlStrings.d.ts +21 -1
- package/esm/util/jexlStrings.js +20 -14
- package/esm/util/layouts/GranularRectLayout.d.ts +20 -25
- package/esm/util/layouts/GranularRectLayout.js +116 -356
- package/esm/util/layouts/index.d.ts +1 -7
- package/esm/util/layouts/index.js +2 -6
- package/esm/util/layouts/intervalUtils.d.ts +12 -1
- package/esm/util/layouts/intervalUtils.js +13 -31
- package/esm/util/layouts/placeRect.d.ts +50 -0
- package/esm/util/layouts/placeRect.js +97 -0
- package/esm/util/lazyAfterAttach.d.ts +13 -0
- package/esm/util/lazyAfterAttach.js +31 -0
- package/esm/util/lazyWithPreload.d.ts +19 -0
- package/esm/util/lazyWithPreload.js +27 -0
- package/esm/util/leadingEdgeAutorun.d.ts +40 -0
- package/esm/util/leadingEdgeAutorun.js +51 -0
- package/esm/util/legendCandidates.d.ts +72 -0
- package/esm/util/legendCandidates.js +138 -0
- package/esm/util/librpc.d.ts +5 -2
- package/esm/util/librpc.js +6 -1
- package/esm/util/linkify.js +2 -0
- package/esm/util/locString.d.ts +72 -0
- package/esm/util/locString.js +178 -7
- package/esm/util/locStringsToRegions.d.ts +10 -0
- package/esm/util/locStringsToRegions.js +35 -0
- package/esm/util/localStorage.d.ts +36 -0
- package/esm/util/localStorage.js +137 -0
- package/esm/util/makeAssembly.d.ts +54 -0
- package/esm/util/makeAssembly.js +52 -0
- package/esm/util/makeTrackId.d.ts +14 -0
- package/esm/util/makeTrackId.js +14 -0
- package/esm/util/markEncoding.d.ts +150 -0
- package/esm/util/markEncoding.js +845 -0
- package/esm/util/markEncodingTypes.d.ts +588 -0
- package/esm/util/markEncodingTypes.js +8 -0
- package/esm/util/matchTrackId.d.ts +11 -0
- package/esm/util/matchTrackId.js +14 -0
- package/esm/util/measureText.d.ts +24 -0
- package/esm/util/measureText.js +51 -0
- package/esm/util/mst-reflection.d.ts +3 -11
- package/esm/util/mst-reflection.js +3 -52
- package/esm/util/mstUtils.d.ts +97 -0
- package/esm/util/mstUtils.js +137 -0
- package/esm/util/nanoid.d.ts +0 -4
- package/esm/util/nanoid.js +10 -20
- package/esm/util/numericUtils.d.ts +27 -0
- package/esm/util/numericUtils.js +143 -0
- package/esm/util/numericValue.d.ts +14 -0
- package/esm/util/numericValue.js +34 -0
- package/esm/util/objectUtils.d.ts +2 -0
- package/esm/util/objectUtils.js +9 -0
- package/esm/util/offscreenCanvasPonyfill.d.ts +5 -4
- package/esm/util/offscreenCanvasPonyfill.js +5 -47
- package/esm/util/openFeatureWidget.d.ts +38 -0
- package/esm/util/openFeatureWidget.js +64 -0
- package/esm/util/openViews.d.ts +17 -0
- package/esm/util/openViews.js +22 -0
- package/esm/util/paintLayer.d.ts +32 -0
- package/esm/util/paintLayer.js +33 -0
- package/esm/util/parentWalk.d.ts +32 -0
- package/esm/util/parentWalk.js +84 -0
- package/esm/util/parseLineByLine.d.ts +44 -2
- package/esm/util/parseLineByLine.js +150 -15
- package/esm/util/parseMotifList.d.ts +17 -0
- package/esm/util/parseMotifList.js +69 -0
- package/esm/util/pluginStore.d.ts +111 -0
- package/esm/util/pluginStore.js +254 -0
- package/esm/util/pointerPresence.d.ts +5 -0
- package/esm/util/pointerPresence.js +21 -0
- package/esm/util/preloadComponent.d.ts +5 -0
- package/esm/util/preloadComponent.js +11 -0
- package/esm/util/progress.d.ts +459 -0
- package/esm/util/progress.js +821 -0
- package/esm/util/quantileExtent.d.ts +49 -0
- package/esm/util/quantileExtent.js +162 -0
- package/esm/util/range.d.ts +46 -1
- package/esm/util/range.js +68 -2
- package/esm/util/renameRegions.d.ts +41 -0
- package/esm/util/renameRegions.js +143 -0
- package/esm/util/renderToStaticMarkup.d.ts +2 -0
- package/esm/util/renderToStaticMarkup.js +60 -0
- package/esm/util/reorder.d.ts +35 -0
- package/esm/util/reorder.js +83 -0
- package/esm/util/resolveRowHeight.d.ts +27 -0
- package/esm/util/resolveRowHeight.js +30 -0
- package/esm/util/revlist.d.ts +13 -0
- package/esm/util/revlist.js +14 -0
- package/esm/util/rowStackGeometry.d.ts +66 -0
- package/esm/util/rowStackGeometry.js +70 -0
- package/esm/util/rpc.d.ts +16 -1
- package/esm/util/rpc.js +12 -1
- package/esm/util/rxjs.d.ts +30 -2
- package/esm/util/rxjs.js +85 -10
- package/esm/util/sameStrings.d.ts +16 -0
- package/esm/util/sameStrings.js +20 -0
- package/esm/util/samplesTsv.d.ts +49 -0
- package/esm/util/samplesTsv.js +86 -0
- package/esm/util/scheduleDetachedDestroy.d.ts +18 -0
- package/esm/util/scheduleDetachedDestroy.js +24 -0
- package/esm/util/scrollLatch.d.ts +5 -0
- package/esm/util/scrollLatch.js +67 -0
- package/esm/util/selectEncodedFeature.d.ts +16 -0
- package/esm/util/selectEncodedFeature.js +34 -0
- package/esm/util/selectNamedRegions.d.ts +136 -0
- package/esm/util/selectNamedRegions.js +222 -0
- package/esm/util/seqUtils.d.ts +17 -0
- package/esm/util/seqUtils.js +80 -0
- package/esm/util/sessionServices.d.ts +29 -0
- package/esm/util/sessionServices.js +46 -0
- package/esm/util/sessionSharing.d.ts +40 -0
- package/esm/util/sessionSharing.js +154 -0
- package/esm/util/sessionStorage.d.ts +1 -0
- package/esm/util/sessionStorage.js +15 -0
- package/esm/util/setStackTraceLimit.d.ts +6 -0
- package/esm/util/setStackTraceLimit.js +20 -0
- package/esm/util/shapeNameList.d.ts +2 -0
- package/esm/util/shapeNameList.js +6 -0
- package/esm/util/shapeNames.d.ts +7 -0
- package/esm/util/shapeNames.js +11 -0
- package/esm/util/simpleFeature.d.ts +111 -4
- package/esm/util/simpleFeature.js +181 -29
- package/esm/util/springAnimate.d.ts +20 -0
- package/esm/util/springAnimate.js +80 -0
- package/esm/util/starFusion.d.ts +26 -0
- package/esm/util/starFusion.js +37 -0
- package/esm/util/stats.d.ts +25 -2
- package/esm/util/stats.js +39 -8
- package/esm/util/stepTables.d.ts +82 -0
- package/esm/util/stepTables.js +243 -0
- package/esm/util/stringUtils.d.ts +5 -0
- package/esm/util/stringUtils.js +34 -0
- package/esm/util/svAlt.d.ts +145 -0
- package/esm/util/svAlt.js +364 -0
- package/esm/util/svgColorProps.d.ts +18 -0
- package/esm/util/svgColorProps.js +55 -0
- package/esm/util/systemColorScheme.d.ts +12 -0
- package/esm/util/systemColorScheme.js +27 -0
- package/esm/util/tabix.d.ts +125 -0
- package/esm/util/tabix.js +148 -0
- package/esm/util/tags.d.ts +2 -0
- package/esm/util/tags.js +5 -0
- package/esm/util/temporaryAssembly.d.ts +21 -0
- package/esm/util/temporaryAssembly.js +29 -0
- package/esm/util/thresholdScale.d.ts +91 -0
- package/esm/util/thresholdScale.js +166 -0
- package/esm/util/tickLabels.d.ts +36 -0
- package/esm/util/tickLabels.js +45 -0
- package/esm/util/timeGate.d.ts +25 -0
- package/esm/util/timeGate.js +78 -0
- package/esm/util/trackConfigDelta.d.ts +84 -0
- package/esm/util/trackConfigDelta.js +206 -0
- package/esm/util/tracks.d.ts +431 -30
- package/esm/util/tracks.js +952 -185
- package/esm/util/translateTranscript.d.ts +44 -0
- package/esm/util/translateTranscript.js +102 -0
- package/esm/util/tss-react/cssAndCx.js +11 -66
- package/esm/util/tss-react/index.d.ts +11 -2
- package/esm/util/tss-react/index.js +9 -2
- package/esm/util/tss-react/makeStyles.js +7 -4
- package/esm/util/tss-react/mergeClasses.js +1 -0
- package/esm/util/tss-react/tools/classnames.d.ts +3 -0
- package/esm/util/tss-react/tools/classnames.js +3 -0
- package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
- package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
- package/esm/util/tss-react/types.d.ts +1 -1
- package/esm/util/tss-react/types.js +1 -6
- package/esm/util/types/ElementId.js +1 -1
- package/esm/util/types/data.d.ts +73 -0
- package/esm/util/types/data.js +41 -0
- package/esm/util/types/index.d.ts +459 -121
- package/esm/util/types/index.js +96 -64
- package/esm/util/types/isAny.d.ts +11 -0
- package/esm/util/types/isAny.js +1 -0
- package/esm/util/types/mst.d.ts +74 -47
- package/esm/util/types/mst.js +31 -22
- package/esm/util/types/predicate.d.ts +9 -0
- package/esm/util/types/predicate.js +1 -0
- package/esm/util/types/renameIds.d.ts +1 -0
- package/esm/util/types/renameIds.js +29 -0
- package/esm/util/types/renderingServices.d.ts +16 -0
- package/esm/util/types/renderingServices.js +1 -0
- package/esm/util/types/services.d.ts +55 -0
- package/esm/util/types/services.js +10 -0
- package/esm/util/types/util.d.ts +8 -2
- package/esm/util/unknownSnapshotKeys.d.ts +51 -0
- package/esm/util/unknownSnapshotKeys.js +82 -0
- package/esm/util/unzip.d.ts +1 -0
- package/esm/util/unzip.js +6 -0
- package/esm/util/useEventCallback.d.ts +1 -0
- package/esm/util/useEventCallback.js +16 -0
- package/esm/util/useFeatureSequence.d.ts +13 -7
- package/esm/util/useFeatureSequence.js +55 -77
- package/esm/util/useFetch.d.ts +55 -0
- package/esm/util/useFetch.js +197 -0
- package/esm/util/useFetchPlugins.d.ts +16 -0
- package/esm/util/useFetchPlugins.js +18 -0
- package/esm/util/useMeasure.d.ts +11 -1
- package/esm/util/useMeasure.js +20 -6
- package/esm/util/usePanZoom.d.ts +75 -0
- package/esm/util/usePanZoom.js +175 -0
- package/esm/util/usePanelVirtualScroll.d.ts +9 -0
- package/esm/util/usePanelVirtualScroll.js +15 -0
- package/esm/util/usePointerDrag.d.ts +37 -0
- package/esm/util/usePointerDrag.js +61 -0
- package/esm/util/useRafCommit.d.ts +4 -0
- package/esm/util/useRafCommit.js +50 -0
- package/esm/util/useResizeDrag.d.ts +91 -0
- package/esm/util/useResizeDrag.js +105 -0
- package/esm/util/useRowVirtualScroll.d.ts +9 -0
- package/esm/util/useRowVirtualScroll.js +22 -0
- package/esm/util/useVirtualScrollWheel.d.ts +23 -0
- package/esm/util/useVirtualScrollWheel.js +74 -0
- package/esm/util/viewHighlights.d.ts +3 -0
- package/esm/util/viewHighlights.js +5 -0
- package/esm/util/viewStatus.d.ts +90 -0
- package/esm/util/viewStatus.js +54 -0
- package/esm/util/virtualRange.d.ts +36 -0
- package/esm/util/virtualRange.js +26 -0
- package/esm/util/webStorage.d.ts +26 -0
- package/esm/util/webStorage.js +92 -0
- package/esm/util/wheelZoom.d.ts +65 -0
- package/esm/util/wheelZoom.js +297 -0
- package/esm/util/whenViewSettled.d.ts +74 -0
- package/esm/util/whenViewSettled.js +77 -0
- package/esm/util/withFeatureDetails.d.ts +34 -0
- package/esm/util/withFeatureDetails.js +59 -0
- package/esm/util/withLaunchInput.d.ts +174 -0
- package/esm/util/withLaunchInput.js +274 -0
- package/package.json +290 -820
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
- package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
- package/esm/ReExports/BaseFeatureDetails.js +0 -9
- package/esm/ReExports/DataGrid.d.ts +0 -1
- package/esm/ReExports/DataGrid.js +0 -1
- package/esm/ReExports/index.d.ts +0 -1
- package/esm/ReExports/index.js +0 -1
- package/esm/configuration/util.d.ts +0 -10
- package/esm/configuration/util.js +0 -123
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
- package/esm/data_adapters/util.d.ts +0 -1
- package/esm/data_adapters/util.js +0 -6
- package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
- package/esm/pluggableElementTypes/GlyphType.js +0 -18
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
- package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
- package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
- package/esm/pluggableElementTypes/renderers/index.js +0 -6
- package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
- package/esm/pluggableElementTypes/renderers/util.js +0 -14
- package/esm/rpc/baseRpcConfig.d.ts +0 -8
- package/esm/rpc/baseRpcConfig.js +0 -10
- package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
- package/esm/rpc/mainThreadRpcConfig.js +0 -8
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
- package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
- package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
- package/esm/rpc/methods/CoreRender.d.ts +0 -14
- package/esm/rpc/methods/CoreRender.js +0 -40
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
- package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
- package/esm/rpc/methods/util.d.ts +0 -15
- package/esm/rpc/methods/util.js +0 -7
- package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
- package/esm/rpc/webWorkerRpcConfig.js +0 -8
- package/esm/ui/MenuButton.d.ts +0 -1
- package/esm/ui/MenuButton.js +0 -1
- package/esm/ui/MenuItems.d.ts +0 -15
- package/esm/ui/MenuItems.js +0 -59
- package/esm/ui/useEvent.d.ts +0 -1
- package/esm/ui/useEvent.js +0 -10
- package/esm/util/blobToDataURL.d.ts +0 -1
- package/esm/util/blobToDataURL.js +0 -14
- package/esm/util/compositeMap.d.ts +0 -11
- package/esm/util/compositeMap.js +0 -59
- package/esm/util/flatqueue/index.d.ts +0 -11
- package/esm/util/flatqueue/index.js +0 -61
- package/esm/util/layouts/BaseLayout.d.ts +0 -30
- package/esm/util/layouts/MultiLayout.d.ts +0 -12
- package/esm/util/layouts/MultiLayout.js +0 -40
- package/esm/util/layouts/PileupLayout.d.ts +0 -41
- package/esm/util/layouts/PileupLayout.js +0 -202
- package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/esm/util/layouts/PrecomputedLayout.js +0 -71
- package/esm/util/layouts/SceneGraph.d.ts +0 -31
- package/esm/util/layouts/SceneGraph.js +0 -121
- package/esm/util/makeAbortableReaction.d.ts +0 -3
- package/esm/util/makeAbortableReaction.js +0 -47
- package/esm/util/map-obj/index.d.ts +0 -13
- package/esm/util/map-obj/index.js +0 -92
- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/stopToken.d.ts +0 -19
- package/esm/util/stopToken.js +0 -90
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{BaseFeatureWidget/BaseFeatureDetail/types.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
- /package/esm/data_adapters/BaseAdapter/{BaseOptions.js → zoomRange.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → rpc/RpcRegistry.js} +0 -0
|
@@ -0,0 +1,167 @@
|
|
|
1
|
+
import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
+
import { use, useState } from 'react';
|
|
3
|
+
import { getEnv } from '@jbrowse/mobx-state-tree';
|
|
4
|
+
import AddIcon from '@mui/icons-material/Add';
|
|
5
|
+
import { Button, ListItemText, MenuItem, Tab, Tabs, TextField, } from '@mui/material';
|
|
6
|
+
import { observer } from 'mobx-react';
|
|
7
|
+
import { readConfObject } from '../configuration/readConfObject.js';
|
|
8
|
+
import { addRow, describedColumns, readFilterRows, removeRow, replaceRow, resolveFields, stripJexlPrefix, writeFilterRows, } from '../util/jexlFilterRows.js';
|
|
9
|
+
import { activeJexlFilters } from '../util/jexlFilters.js';
|
|
10
|
+
import { ensureJexlPrefix } from '../util/jexlStrings.js';
|
|
11
|
+
import { getContainingTrack } from '../util/mstUtils.js';
|
|
12
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
13
|
+
import ExternalLink from './ExternalLink.js';
|
|
14
|
+
import { ConditionRowEditor, TextRowEditor, compileError, } from './JexlFilterRowEditors.js';
|
|
15
|
+
import MonospaceTextField from './MonospaceTextField.js';
|
|
16
|
+
import SubmitDialog from './SubmitDialog.js';
|
|
17
|
+
/**
|
|
18
|
+
* What a display filtering plain annotation features offers as a starting
|
|
19
|
+
* point. A display whose features are a richer record — a VCF, say — passes its
|
|
20
|
+
* own list instead: the examples are the only place the dialog says what is
|
|
21
|
+
* readable off a feature, so a variant track showing `type=='gene'` is teaching
|
|
22
|
+
* the wrong vocabulary.
|
|
23
|
+
*/
|
|
24
|
+
const FEATURE_FILTER_EXAMPLES = [
|
|
25
|
+
{
|
|
26
|
+
code: "jexl:get(feature,'name')=='BRCA1'",
|
|
27
|
+
description: 'show only features where the name attribute is BRCA1',
|
|
28
|
+
},
|
|
29
|
+
{
|
|
30
|
+
code: "jexl:startsWith(get(feature,'name'),'PREFIX')",
|
|
31
|
+
description: "show only features where the string 'PREFIX' is the prefix of the feature name. endsWith also works",
|
|
32
|
+
},
|
|
33
|
+
{
|
|
34
|
+
code: "jexl:includes(get(feature,'name'),'PREFIX')",
|
|
35
|
+
description: "show only features where the string 'PREFIX' appears in the feature name",
|
|
36
|
+
},
|
|
37
|
+
{
|
|
38
|
+
code: "jexl:get(feature,'type')=='gene'",
|
|
39
|
+
description: 'show only gene type features in a GFF that has many other feature types',
|
|
40
|
+
},
|
|
41
|
+
{
|
|
42
|
+
code: "jexl:get(feature,'score') > 400",
|
|
43
|
+
description: 'show only features that have a score greater than 400',
|
|
44
|
+
},
|
|
45
|
+
{
|
|
46
|
+
code: "jexl:get(feature,'end') - get(feature,'start') < 1000000",
|
|
47
|
+
description: 'show only features with length less than 1Mbp',
|
|
48
|
+
},
|
|
49
|
+
];
|
|
50
|
+
const FEATURE_FIELDS = [
|
|
51
|
+
{ label: 'name', path: ['name'], type: 'text' },
|
|
52
|
+
{ label: 'type', path: ['type'], type: 'text' },
|
|
53
|
+
{ label: 'score', path: ['score'], type: 'number' },
|
|
54
|
+
{ label: 'start', path: ['start'], type: 'number' },
|
|
55
|
+
{ label: 'end', path: ['end'], type: 'number' },
|
|
56
|
+
{ label: 'strand', path: ['strand'], type: 'number' },
|
|
57
|
+
];
|
|
58
|
+
const useStyles = makeStyles()(theme => ({
|
|
59
|
+
body: {
|
|
60
|
+
minHeight: 280,
|
|
61
|
+
},
|
|
62
|
+
tabs: {
|
|
63
|
+
marginBottom: theme.spacing(2),
|
|
64
|
+
},
|
|
65
|
+
hint: {
|
|
66
|
+
marginBottom: theme.spacing(2),
|
|
67
|
+
color: theme.palette.text.secondary,
|
|
68
|
+
},
|
|
69
|
+
examples: {
|
|
70
|
+
minWidth: 220,
|
|
71
|
+
marginBottom: theme.spacing(1),
|
|
72
|
+
},
|
|
73
|
+
}));
|
|
74
|
+
function textLines(text) {
|
|
75
|
+
return text
|
|
76
|
+
.split('\n')
|
|
77
|
+
.map(line => line.trim())
|
|
78
|
+
.filter(line => !!line)
|
|
79
|
+
.map(ensureJexlPrefix);
|
|
80
|
+
}
|
|
81
|
+
function textError(text, jexl) {
|
|
82
|
+
for (const [i, line] of text.split('\n').entries()) {
|
|
83
|
+
const error = line.trim() ? compileError(line, jexl) : undefined;
|
|
84
|
+
if (error) {
|
|
85
|
+
return `Line ${i + 1}: ${error}`;
|
|
86
|
+
}
|
|
87
|
+
}
|
|
88
|
+
return undefined;
|
|
89
|
+
}
|
|
90
|
+
function trackName(model) {
|
|
91
|
+
try {
|
|
92
|
+
return readConfObject(getContainingTrack(model).configuration, 'name');
|
|
93
|
+
}
|
|
94
|
+
catch {
|
|
95
|
+
return undefined;
|
|
96
|
+
}
|
|
97
|
+
}
|
|
98
|
+
function withOneRow(state) {
|
|
99
|
+
return state.rows.length > 0 ? state : addRow(state);
|
|
100
|
+
}
|
|
101
|
+
/**
|
|
102
|
+
* Editor for a display's jexl feature filters, for any display implementing
|
|
103
|
+
* the two-tier {@link JexlFilterModel} contract. The Conditions tab shows each
|
|
104
|
+
* line as rows of field, operator and value where it can, and as text where it
|
|
105
|
+
* cannot; the Text tab is every line as text.
|
|
106
|
+
*
|
|
107
|
+
* `fields` lists what the field picker offers, then the columns `metadata`
|
|
108
|
+
* describes, if it is an adapter's `{column: description}` map. Either one
|
|
109
|
+
* given as a promise suspends the dialog until it resolves, so it must not
|
|
110
|
+
* reject.
|
|
111
|
+
*/
|
|
112
|
+
const JexlFilterDialog = observer(function JexlFilterDialog({ model, handleClose, examples = FEATURE_FILTER_EXAMPLES, fields = FEATURE_FIELDS, metadata, }) {
|
|
113
|
+
const { classes } = useStyles();
|
|
114
|
+
const jexl = getEnv(model).pluginManager
|
|
115
|
+
.jexl;
|
|
116
|
+
const fieldList = fields instanceof Promise ? use(fields) : fields;
|
|
117
|
+
const described = metadata && use(metadata);
|
|
118
|
+
const [choices] = useState(() => resolveFields([...fieldList, ...describedColumns(described, fieldList)]));
|
|
119
|
+
const [state, setState] = useState(() => withOneRow(readFilterRows(activeJexlFilters(model), jexl, choices)));
|
|
120
|
+
const [tab, setTab] = useState('conditions');
|
|
121
|
+
const [text, setText] = useState({ value: '', shown: '' });
|
|
122
|
+
const textEdited = text.value !== text.shown;
|
|
123
|
+
const error = tab === 'text'
|
|
124
|
+
? textError(text.value, jexl)
|
|
125
|
+
: state.rows.some(row => row.kind === 'text' && compileError(row.text, jexl));
|
|
126
|
+
const name = trackName(model);
|
|
127
|
+
return (_jsx(SubmitDialog, { maxWidth: "md", fullWidth: true, open: true, title: name ? `Filter ${name}` : 'Filter features', submitText: "Apply", submitDisabled: !!error, onCancel: handleClose, onSubmit: () => {
|
|
128
|
+
// An emptied list is "show everything", which is NOT the same as
|
|
129
|
+
// following the config slot, so it is set as an override too
|
|
130
|
+
model.setFilter(tab === 'text' && textEdited
|
|
131
|
+
? textLines(text.value)
|
|
132
|
+
: writeFilterRows(state));
|
|
133
|
+
handleClose();
|
|
134
|
+
}, children: _jsxs("div", { className: classes.body, children: [_jsxs(Tabs, { className: classes.tabs, value: tab, onChange: (_, next) => {
|
|
135
|
+
if (next === 'text') {
|
|
136
|
+
const value = writeFilterRows(state)
|
|
137
|
+
.map(stripJexlPrefix)
|
|
138
|
+
.join('\n');
|
|
139
|
+
setText({ value, shown: value });
|
|
140
|
+
}
|
|
141
|
+
else if (textEdited) {
|
|
142
|
+
setState(withOneRow(readFilterRows(textLines(text.value), jexl, choices)));
|
|
143
|
+
}
|
|
144
|
+
setTab(next);
|
|
145
|
+
}, children: [_jsx(Tab, { value: "conditions", label: "Conditions" }), _jsx(Tab, { value: "text", label: "Text", "data-testid": "jexl-filter-text-tab" })] }), tab === 'conditions' ? (_jsxs(_Fragment, { children: [_jsx("div", { className: classes.hint, children: "Show features that match every condition." }), state.rows.map(row => row.kind === 'text' ? (_jsx(TextRowEditor, { row: row, jexl: jexl, onChange: next => {
|
|
146
|
+
setState(replaceRow(state, next));
|
|
147
|
+
}, onRemove: () => {
|
|
148
|
+
setState(removeRow(state, row.id));
|
|
149
|
+
} }, row.id)) : (_jsx(ConditionRowEditor, { row: row, choices: choices, onChange: next => {
|
|
150
|
+
setState(replaceRow(state, next));
|
|
151
|
+
}, onRemove: () => {
|
|
152
|
+
setState(removeRow(state, row.id));
|
|
153
|
+
} }, row.id))), _jsx(Button, { startIcon: _jsx(AddIcon, {}), onClick: () => {
|
|
154
|
+
setState(addRow(state));
|
|
155
|
+
}, children: "Add condition" })] })) : (_jsxs(_Fragment, { children: [_jsx(TextField, { select: true, size: "small", label: "Insert example\u2026", value: "", className: classes.examples, onChange: event => {
|
|
156
|
+
const code = stripJexlPrefix(event.target.value);
|
|
157
|
+
setText({
|
|
158
|
+
...text,
|
|
159
|
+
value: text.value.trim()
|
|
160
|
+
? `${text.value.trimEnd()}\n${code}`
|
|
161
|
+
: code,
|
|
162
|
+
});
|
|
163
|
+
}, children: examples.map(({ code, description }) => (_jsx(MenuItem, { value: code, children: _jsx(ListItemText, { primary: stripJexlPrefix(code), secondary: description }) }, code))) }), _jsx(MonospaceTextField, { fullWidth: true, minRows: 6, maxRows: 14, value: text.value, error: error, helperText: "One filter per line; a feature has to pass every line.", onChange: value => {
|
|
164
|
+
setText({ ...text, value });
|
|
165
|
+
} }), _jsxs("p", { children: ["See the", ' ', _jsx(ExternalLink, { href: "https://jbrowse.org/jb2/docs/config_guides/jexl/", children: "jexl documentation" }), ' ', "for the expression language."] })] }))] }) }));
|
|
166
|
+
});
|
|
167
|
+
export default JexlFilterDialog;
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
import type { ConditionRow, FieldChoice, TextRow } from '../util/jexlFilterRows.ts';
|
|
2
|
+
import type { Jexl } from '@jbrowse/jexl';
|
|
3
|
+
export declare function compileError(line: string, jexl: Pick<Jexl, 'compile'>): string | undefined;
|
|
4
|
+
export declare function ConditionRowEditor({ row, choices, onChange, onRemove, }: {
|
|
5
|
+
row: ConditionRow;
|
|
6
|
+
choices: FieldChoice[];
|
|
7
|
+
onChange: (row: ConditionRow) => void;
|
|
8
|
+
onRemove: () => void;
|
|
9
|
+
}): import("react").JSX.Element;
|
|
10
|
+
export declare function TextRowEditor({ row, jexl, onChange, onRemove, }: {
|
|
11
|
+
row: TextRow;
|
|
12
|
+
jexl: Pick<Jexl, 'compile'>;
|
|
13
|
+
onChange: (row: TextRow) => void;
|
|
14
|
+
onRemove: () => void;
|
|
15
|
+
}): import("react").JSX.Element;
|
|
@@ -0,0 +1,90 @@
|
|
|
1
|
+
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
+
import CloseIcon from '@mui/icons-material/Close';
|
|
3
|
+
import { Autocomplete, IconButton, ListItemText, MenuItem, TextField, } from '@mui/material';
|
|
4
|
+
import { OPERATORS, stripJexlPrefix, typedField, withField, withOp, } from '../util/jexlFilterRows.js';
|
|
5
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
6
|
+
import MonospaceTextField from './MonospaceTextField.js';
|
|
7
|
+
const useStyles = makeStyles()(theme => ({
|
|
8
|
+
row: {
|
|
9
|
+
display: 'flex',
|
|
10
|
+
alignItems: 'flex-start',
|
|
11
|
+
gap: theme.spacing(1),
|
|
12
|
+
marginBottom: theme.spacing(1),
|
|
13
|
+
},
|
|
14
|
+
field: {
|
|
15
|
+
width: 220,
|
|
16
|
+
flexShrink: 0,
|
|
17
|
+
},
|
|
18
|
+
op: {
|
|
19
|
+
width: 130,
|
|
20
|
+
flexShrink: 0,
|
|
21
|
+
},
|
|
22
|
+
value: {
|
|
23
|
+
flex: 1,
|
|
24
|
+
},
|
|
25
|
+
expression: {
|
|
26
|
+
width: 24,
|
|
27
|
+
flexShrink: 0,
|
|
28
|
+
textAlign: 'center',
|
|
29
|
+
fontStyle: 'italic',
|
|
30
|
+
fontFamily: 'serif',
|
|
31
|
+
fontSize: 18,
|
|
32
|
+
paddingTop: 6,
|
|
33
|
+
color: theme.palette.text.secondary,
|
|
34
|
+
},
|
|
35
|
+
}));
|
|
36
|
+
export function compileError(line, jexl) {
|
|
37
|
+
try {
|
|
38
|
+
jexl.compile(stripJexlPrefix(line.trim()));
|
|
39
|
+
return undefined;
|
|
40
|
+
}
|
|
41
|
+
catch (e) {
|
|
42
|
+
return e instanceof Error ? e.message : String(e);
|
|
43
|
+
}
|
|
44
|
+
}
|
|
45
|
+
function RemoveButton({ onClick }) {
|
|
46
|
+
return (_jsx(IconButton, { size: "small", "aria-label": "Remove condition", onClick: onClick, children: _jsx(CloseIcon, { fontSize: "small" }) }));
|
|
47
|
+
}
|
|
48
|
+
function ValueInput({ row, onChange, }) {
|
|
49
|
+
const { classes } = useStyles();
|
|
50
|
+
const { field, op, value } = row;
|
|
51
|
+
if (op === 'set' || op === '!set') {
|
|
52
|
+
return _jsx("div", { className: classes.value });
|
|
53
|
+
}
|
|
54
|
+
const suggestions = field?.values ?? [];
|
|
55
|
+
if (op === 'in') {
|
|
56
|
+
return (_jsx(Autocomplete, { className: classes.value, size: "small", multiple: true, freeSolo: true, autoSelect: true, options: suggestions, value: [value].flat(), onChange: (_, next) => {
|
|
57
|
+
onChange({ ...row, value: next });
|
|
58
|
+
}, renderInput: params => (_jsx(TextField, { ...params, placeholder: "Values, Enter after each" })) }));
|
|
59
|
+
}
|
|
60
|
+
const text = [value].flat()[0] ?? '';
|
|
61
|
+
return suggestions.length > 0 && op !== '~' ? (_jsx(Autocomplete, { className: classes.value, size: "small", freeSolo: true, options: suggestions, inputValue: text, onInputChange: (_, next) => {
|
|
62
|
+
onChange({ ...row, value: next });
|
|
63
|
+
}, renderInput: params => _jsx(TextField, { ...params, placeholder: "Value" }) })) : (_jsx(TextField, { className: classes.value, size: "small", placeholder: op === '~' ? 'Regular expression' : 'Value', type: field?.type === 'number' ? 'number' : 'text', disabled: !field, value: text, onChange: event => {
|
|
64
|
+
onChange({ ...row, value: event.target.value });
|
|
65
|
+
} }));
|
|
66
|
+
}
|
|
67
|
+
export function ConditionRowEditor({ row, choices, onChange, onRemove, }) {
|
|
68
|
+
const { classes } = useStyles();
|
|
69
|
+
const { field } = row;
|
|
70
|
+
const grouped = choices.some(choice => choice.group);
|
|
71
|
+
return (_jsxs("div", { className: classes.row, children: [_jsx(Autocomplete, { className: classes.field, size: "small", freeSolo: true, autoSelect: true, options: choices, groupBy: grouped ? choice => choice.group ?? '' : undefined, getOptionLabel: choice => typeof choice === 'string' ? choice : choice.label, getOptionKey: choice => typeof choice === 'string' ? choice : choice.key, isOptionEqualToValue: (a, b) => typeof b !== 'string' && a.key === b.key, value: field ?? null, onChange: (_, next) => {
|
|
72
|
+
const chosen = typeof next !== 'string'
|
|
73
|
+
? next
|
|
74
|
+
: next === field?.label
|
|
75
|
+
? field
|
|
76
|
+
: (choices.find(choice => choice.label === next) ??
|
|
77
|
+
typedField(next));
|
|
78
|
+
if (chosen && chosen.key !== field?.key) {
|
|
79
|
+
onChange(withField(row, chosen));
|
|
80
|
+
}
|
|
81
|
+
}, renderOption: ({ key, ...props }, choice) => (_jsx("li", { ...props, children: _jsx(ListItemText, { primary: choice.label, secondary: choice.description }) }, key)), renderInput: params => _jsx(TextField, { ...params, placeholder: "Field" }) }), _jsx(TextField, { className: classes.op, select: true, size: "small", disabled: !field, value: row.op, helperText: field?.multi ? 'any value' : undefined, onChange: event => {
|
|
82
|
+
onChange(withOp(row, event.target.value));
|
|
83
|
+
}, children: OPERATORS[field?.type ?? 'any'].map(({ op, label }) => (_jsx(MenuItem, { value: op, children: label }, op))) }), _jsx(ValueInput, { row: row, onChange: onChange }), _jsx(RemoveButton, { onClick: onRemove })] }));
|
|
84
|
+
}
|
|
85
|
+
export function TextRowEditor({ row, jexl, onChange, onRemove, }) {
|
|
86
|
+
const { classes } = useStyles();
|
|
87
|
+
return (_jsxs("div", { className: classes.row, children: [_jsx("div", { className: classes.expression, title: "An expression the field pickers cannot show", children: "\u0192" }), _jsx(MonospaceTextField, { className: classes.value, variant: "standard", fullWidth: true, value: row.text, error: compileError(row.text, jexl), onChange: text => {
|
|
88
|
+
onChange({ ...row, text });
|
|
89
|
+
} }), _jsx(RemoveButton, { onClick: onRemove })] }));
|
|
90
|
+
}
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
import type { ReactNode } from 'react';
|
|
2
|
+
export default function LabeledCheckbox({ checked, onChange, label, className, disabled, size, }: {
|
|
3
|
+
checked: boolean;
|
|
4
|
+
onChange: (checked: boolean) => void;
|
|
5
|
+
label: ReactNode;
|
|
6
|
+
className?: string;
|
|
7
|
+
disabled?: boolean;
|
|
8
|
+
size?: 'small' | 'medium';
|
|
9
|
+
}): import("react").JSX.Element;
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { Checkbox, FormControlLabel } from '@mui/material';
|
|
3
|
+
export default function LabeledCheckbox({ checked, onChange, label, className, disabled, size, }) {
|
|
4
|
+
return (_jsx(FormControlLabel, { className: className, disabled: disabled, control: _jsx(Checkbox, { size: size, checked: checked, onChange: event => {
|
|
5
|
+
onChange(event.target.checked);
|
|
6
|
+
} }), label: label }));
|
|
7
|
+
}
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { Suspense, lazy } from 'react';
|
|
3
|
+
// The tooltip, behind its own chunk: @floating-ui is ~266KB and this is what
|
|
4
|
+
// lets the ui barrel export it without putting that on the startup path. A
|
|
5
|
+
// consumer that wants the eager component deep-imports './BaseTooltip.tsx'.
|
|
6
|
+
const Lazy = lazy(() => import('./BaseTooltip.js'));
|
|
7
|
+
export default function LazyBaseTooltip(props) {
|
|
8
|
+
return (_jsx(Suspense, { fallback: null, children: _jsx(Lazy, { ...props }) }));
|
|
9
|
+
}
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { appendGlyph } from '@jbrowse/render-core/marks/glyphPaint';
|
|
3
|
+
import { DIAMOND_GLYPH_SCALE } from '@jbrowse/render-core/shaders/pointMarkConsts';
|
|
4
|
+
import { SHAPE_CODES } from '../util/shapeNames.js';
|
|
5
|
+
// The point mark's own painter, recorded as SVG path data, so the key draws
|
|
6
|
+
// the glyph the plot draws. The diamond paints wider than its diameter and
|
|
7
|
+
// is scaled down to fit the box.
|
|
8
|
+
function glyphPathData(shape, size, x, y) {
|
|
9
|
+
const d = [];
|
|
10
|
+
const path = {
|
|
11
|
+
moveTo: (px, py) => d.push(`M${px} ${py}`),
|
|
12
|
+
lineTo: (px, py) => d.push(`L${px} ${py}`),
|
|
13
|
+
closePath: () => d.push('Z'),
|
|
14
|
+
rect: (px, py, w, h) => d.push(`M${px} ${py}h${w}v${h}h${-w}Z`),
|
|
15
|
+
arc: (cx, cy, r) => d.push(`A${r} ${r} 0 1 0 ${cx - r} ${cy}A${r} ${r} 0 1 0 ${cx + r} ${cy}Z`),
|
|
16
|
+
};
|
|
17
|
+
const diameter = shape === 'diamond' ? size / DIAMOND_GLYPH_SCALE : size;
|
|
18
|
+
appendGlyph(path, SHAPE_CODES[shape], x + size / 2, y + size / 2, diameter);
|
|
19
|
+
return d.join('');
|
|
20
|
+
}
|
|
21
|
+
// The one place that decides what a legend swatch looks like. Returns a bare
|
|
22
|
+
// shape rather than a rooted <svg>, so the floating legend (which wraps it in an
|
|
23
|
+
// inline <svg>) and the SVG export (which drops it into a row <g>) draw the
|
|
24
|
+
// identical box.
|
|
25
|
+
//
|
|
26
|
+
// The shape fills the `size` box from (x, y) so a caller can lay swatches out on
|
|
27
|
+
// a fixed pitch.
|
|
28
|
+
export function LegendSwatchGlyph({ swatch, size, x = 0, y = 0, }) {
|
|
29
|
+
return swatch.shape ? (_jsx("path", { d: glyphPathData(swatch.shape, size, x, y), fill: swatch.color })) : (_jsx("rect", { x: x, y: y, width: size, height: size, fill: swatch.color }));
|
|
30
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function LoadingDots(): import("react").JSX.Element;
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
3
|
+
import { dot1, dot2, dot3 } from './loadingDotKeyframes.js';
|
|
4
|
+
const useStyles = makeStyles()({
|
|
5
|
+
dots: {
|
|
6
|
+
display: 'inline-block',
|
|
7
|
+
width: '1em',
|
|
8
|
+
textAlign: 'left',
|
|
9
|
+
'& span': {
|
|
10
|
+
display: 'inline-block',
|
|
11
|
+
opacity: 0,
|
|
12
|
+
// promote each dot to its own compositor layer so the opacity animation
|
|
13
|
+
// is offloaded from the main thread and keeps running during jank
|
|
14
|
+
willChange: 'opacity',
|
|
15
|
+
'&:nth-of-type(1)': {
|
|
16
|
+
animation: `${dot1} 1.2s infinite`,
|
|
17
|
+
},
|
|
18
|
+
'&:nth-of-type(2)': {
|
|
19
|
+
animation: `${dot2} 1.2s infinite`,
|
|
20
|
+
},
|
|
21
|
+
'&:nth-of-type(3)': {
|
|
22
|
+
animation: `${dot3} 1.2s infinite`,
|
|
23
|
+
},
|
|
24
|
+
},
|
|
25
|
+
},
|
|
26
|
+
});
|
|
27
|
+
export default function LoadingDots() {
|
|
28
|
+
const { classes } = useStyles();
|
|
29
|
+
return (_jsxs("span", { className: classes.dots, children: [_jsx("span", { children: "." }), _jsx("span", { children: "." }), _jsx("span", { children: "." })] }));
|
|
30
|
+
}
|
|
@@ -3,5 +3,21 @@ interface Props extends TypographyProps {
|
|
|
3
3
|
message?: string;
|
|
4
4
|
children?: never;
|
|
5
5
|
}
|
|
6
|
-
|
|
6
|
+
/**
|
|
7
|
+
* The label every part of the app shows while it is working, and — through
|
|
8
|
+
* `data-busy` — the only thing an automated capture has to look at to know that
|
|
9
|
+
* it is.
|
|
10
|
+
*
|
|
11
|
+
* The attribute is the contract that replaces reading the label. A harness
|
|
12
|
+
* waiting for a page to finish used to scan visible text for /^loading/ and
|
|
13
|
+
* resolve `getComputedStyle` to decide whether each match was on screen, which
|
|
14
|
+
* makes a rendering detail load-bearing: a reworded message, a translation, or
|
|
15
|
+
* an element that animates its opacity all change the answer. `[data-busy]` is
|
|
16
|
+
* published by the component that knows, so a wait is one selector.
|
|
17
|
+
*
|
|
18
|
+
* Anything that renders its own in-flight banner instead of this component
|
|
19
|
+
* should carry the attribute too — see `isPageBusyInPage` in
|
|
20
|
+
* `@jbrowse/capture`, which is what reads it.
|
|
21
|
+
*/
|
|
22
|
+
export default function LoadingEllipses({ message, variant, ...rest }: Props): import("react").JSX.Element;
|
|
7
23
|
export {};
|
|
@@ -1,31 +1,22 @@
|
|
|
1
|
-
import { jsx as _jsx } from "react/jsx-runtime";
|
|
1
|
+
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
2
|
import { Typography } from '@mui/material';
|
|
3
|
-
import
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
content: '...';
|
|
23
|
-
}
|
|
24
|
-
`} 1.2s infinite ease-in-out`,
|
|
25
|
-
},
|
|
26
|
-
},
|
|
27
|
-
});
|
|
28
|
-
export default function LoadingEllipses({ message, children, variant = 'body2', ...rest }) {
|
|
29
|
-
const { classes } = useStyles();
|
|
30
|
-
return (_jsx(Typography, { className: cx(classes.dots, rest.className), ...rest, variant: variant, children: message || 'Loading' }));
|
|
3
|
+
import LoadingDots from './LoadingDots.js';
|
|
4
|
+
/**
|
|
5
|
+
* The label every part of the app shows while it is working, and — through
|
|
6
|
+
* `data-busy` — the only thing an automated capture has to look at to know that
|
|
7
|
+
* it is.
|
|
8
|
+
*
|
|
9
|
+
* The attribute is the contract that replaces reading the label. A harness
|
|
10
|
+
* waiting for a page to finish used to scan visible text for /^loading/ and
|
|
11
|
+
* resolve `getComputedStyle` to decide whether each match was on screen, which
|
|
12
|
+
* makes a rendering detail load-bearing: a reworded message, a translation, or
|
|
13
|
+
* an element that animates its opacity all change the answer. `[data-busy]` is
|
|
14
|
+
* published by the component that knows, so a wait is one selector.
|
|
15
|
+
*
|
|
16
|
+
* Anything that renders its own in-flight banner instead of this component
|
|
17
|
+
* should carry the attribute too — see `isPageBusyInPage` in
|
|
18
|
+
* `@jbrowse/capture`, which is what reads it.
|
|
19
|
+
*/
|
|
20
|
+
export default function LoadingEllipses({ message, variant = 'body2', ...rest }) {
|
|
21
|
+
return (_jsxs(Typography, { ...rest, variant: variant, "data-busy": "true", children: [message || 'Loading', _jsx(LoadingDots, {})] }));
|
|
31
22
|
}
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Returns false, then flips true once `active` has stayed true continuously for
|
|
3
|
+
* `delayMs`. Each activation gets a fresh delay, and the flag drops the moment
|
|
4
|
+
* `active` does.
|
|
5
|
+
*
|
|
6
|
+
* Keyed on a count of RISING edges rather than on `active` itself, so the
|
|
7
|
+
* falling edge does no work at all. A display refetching through a wheel zoom
|
|
8
|
+
* flips `active` several times a second — it finishes a fetch, waits out the
|
|
9
|
+
* debounce, starts the next — and an effect depending on `active` tore its timer
|
|
10
|
+
* down and built a new one on each of those, twice over, for a scrim that by
|
|
11
|
+
* construction never appears. Deriving the flag from a comparison instead means
|
|
12
|
+
* one `setTimeout` per loading pulse, which is the floor for these semantics.
|
|
13
|
+
*/
|
|
14
|
+
export declare function useDelayedFlag(active: boolean, delayMs: number): boolean;
|
|
15
|
+
export default function LoadingOverlay({ statusMessage, progress, isVisible, immediate, canceled, onCancel, onRetry, }: {
|
|
16
|
+
statusMessage?: string;
|
|
17
|
+
progress?: number;
|
|
18
|
+
isVisible?: boolean;
|
|
19
|
+
immediate?: boolean;
|
|
20
|
+
canceled?: boolean;
|
|
21
|
+
onCancel?: () => void;
|
|
22
|
+
onRetry?: () => void;
|
|
23
|
+
}): import("react").JSX.Element | null;
|
|
@@ -0,0 +1,139 @@
|
|
|
1
|
+
import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
+
import { useEffect, useState } from 'react';
|
|
3
|
+
import CloseIcon from '@mui/icons-material/Close';
|
|
4
|
+
import RefreshIcon from '@mui/icons-material/Refresh';
|
|
5
|
+
import { IconButton, Tooltip } from '@mui/material';
|
|
6
|
+
import { progressLabel } from '../util/progress.js';
|
|
7
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
8
|
+
import LoadingDots from './LoadingDots.js';
|
|
9
|
+
import StatusProgressBar from './StatusProgressBar.js';
|
|
10
|
+
import { alpha } from './palette.js';
|
|
11
|
+
const cancelDelayMs = 5000;
|
|
12
|
+
// suppress the overlay for the first moments of a refetch so quick zoom/pan
|
|
13
|
+
// loads stay silent and only genuinely slow loads ever draw the indicator.
|
|
14
|
+
// Skipped when `immediate` is set (initial load with nothing on screen yet) —
|
|
15
|
+
// there's no content to flash over, so the indicator shows right away.
|
|
16
|
+
const flashDelayMs = 250;
|
|
17
|
+
/**
|
|
18
|
+
* Returns false, then flips true once `active` has stayed true continuously for
|
|
19
|
+
* `delayMs`. Each activation gets a fresh delay, and the flag drops the moment
|
|
20
|
+
* `active` does.
|
|
21
|
+
*
|
|
22
|
+
* Keyed on a count of RISING edges rather than on `active` itself, so the
|
|
23
|
+
* falling edge does no work at all. A display refetching through a wheel zoom
|
|
24
|
+
* flips `active` several times a second — it finishes a fetch, waits out the
|
|
25
|
+
* debounce, starts the next — and an effect depending on `active` tore its timer
|
|
26
|
+
* down and built a new one on each of those, twice over, for a scrim that by
|
|
27
|
+
* construction never appears. Deriving the flag from a comparison instead means
|
|
28
|
+
* one `setTimeout` per loading pulse, which is the floor for these semantics.
|
|
29
|
+
*/
|
|
30
|
+
export function useDelayedFlag(active, delayMs) {
|
|
31
|
+
const [previous, setPrevious] = useState(active);
|
|
32
|
+
const [activation, setActivation] = useState(0);
|
|
33
|
+
if (previous !== active) {
|
|
34
|
+
setPrevious(active);
|
|
35
|
+
if (active) {
|
|
36
|
+
setActivation(n => n + 1);
|
|
37
|
+
}
|
|
38
|
+
}
|
|
39
|
+
const [elapsedFor, setElapsedFor] = useState(-1);
|
|
40
|
+
useEffect(() => {
|
|
41
|
+
const id = setTimeout(() => {
|
|
42
|
+
setElapsedFor(activation);
|
|
43
|
+
}, delayMs);
|
|
44
|
+
return () => {
|
|
45
|
+
clearTimeout(id);
|
|
46
|
+
};
|
|
47
|
+
}, [activation, delayMs]);
|
|
48
|
+
return active && elapsedFor === activation;
|
|
49
|
+
}
|
|
50
|
+
const useStyles = makeStyles()(theme => {
|
|
51
|
+
// derive the stripe + chip tints from the theme so the "something's happening"
|
|
52
|
+
// signal stays subtle and equally visible in light and dark mode
|
|
53
|
+
const stripe = alpha(theme.palette.text.primary, 0.05);
|
|
54
|
+
return {
|
|
55
|
+
overlay: {
|
|
56
|
+
position: 'absolute',
|
|
57
|
+
top: 0,
|
|
58
|
+
left: 0,
|
|
59
|
+
right: 0,
|
|
60
|
+
bottom: 0,
|
|
61
|
+
background: `repeating-linear-gradient(45deg, transparent, transparent 8px, ${stripe} 8px, ${stripe} 16px)`,
|
|
62
|
+
pointerEvents: 'none',
|
|
63
|
+
zIndex: 1,
|
|
64
|
+
display: 'flex',
|
|
65
|
+
justifyContent: 'center',
|
|
66
|
+
alignItems: 'flex-start',
|
|
67
|
+
paddingTop: '20px',
|
|
68
|
+
},
|
|
69
|
+
// the status chip is the only interactive element; the striped backdrop stays
|
|
70
|
+
// click-through so it never swallows track interactions.
|
|
71
|
+
//
|
|
72
|
+
// Mostly-opaque paper (was 0.4, which let dense features and the striping
|
|
73
|
+
// read straight through the label): the chip sits over a canvas whose colors
|
|
74
|
+
// aren't known here, so the text needs its own backing to stay legible.
|
|
75
|
+
// `background.paper` rather than a literal white so dark mode gets the dark
|
|
76
|
+
// equivalent, and short of fully opaque so it still reads as an overlay.
|
|
77
|
+
content: {
|
|
78
|
+
pointerEvents: 'auto',
|
|
79
|
+
display: 'flex',
|
|
80
|
+
flexDirection: 'column',
|
|
81
|
+
alignItems: 'center',
|
|
82
|
+
gap: 2,
|
|
83
|
+
background: alpha(theme.palette.background.paper, 0.85),
|
|
84
|
+
borderRadius: 4,
|
|
85
|
+
padding: '2px 8px',
|
|
86
|
+
},
|
|
87
|
+
row: {
|
|
88
|
+
display: 'flex',
|
|
89
|
+
alignItems: 'center',
|
|
90
|
+
gap: 4,
|
|
91
|
+
},
|
|
92
|
+
text: {
|
|
93
|
+
fontSize: '0.8rem',
|
|
94
|
+
fontWeight: 300,
|
|
95
|
+
},
|
|
96
|
+
bar: {
|
|
97
|
+
width: 160,
|
|
98
|
+
},
|
|
99
|
+
};
|
|
100
|
+
});
|
|
101
|
+
export default function LoadingOverlay({ statusMessage, progress, isVisible, immediate, canceled, onCancel, onRetry, }) {
|
|
102
|
+
const { classes } = useStyles();
|
|
103
|
+
const hasProgress = progress !== undefined;
|
|
104
|
+
// anti-flash: only render after the load has run long enough to be worth
|
|
105
|
+
// signaling, so fast loads show nothing at all. `immediate` bypasses this for
|
|
106
|
+
// initial loads, where nothing is on screen to flash over yet.
|
|
107
|
+
//
|
|
108
|
+
// The delay runs off `isVisible` ALONE. Feeding `!immediate` in as well made
|
|
109
|
+
// `immediate` *restart* the timer rather than merely bypass it, and the chrome
|
|
110
|
+
// flips `immediate` mid-load: it passes `immediate={!painted}`, so first paint
|
|
111
|
+
// drops it while the phase is still `loading` — region 1 drawn, regions 2..n
|
|
112
|
+
// in flight. The scrim then blinked out for a fresh 250 ms in the middle of
|
|
113
|
+
// one continuous load.
|
|
114
|
+
const shownAfterDelay = useDelayedFlag(!!isVisible, flashDelayMs);
|
|
115
|
+
const shown = !!isVisible && (!!immediate || shownAfterDelay);
|
|
116
|
+
// only offer cancel after the overlay has been continuously visible for a few
|
|
117
|
+
// seconds, so a quick load can't be canceled by an accidental click.
|
|
118
|
+
//
|
|
119
|
+
// Keyed on `shown` rather than `isVisible`, which is what "continuously
|
|
120
|
+
// visible" means and is also what keeps this timer out of a zoom: a display
|
|
121
|
+
// refetching per animation frame flips `isVisible` a couple of times a frame,
|
|
122
|
+
// and each flip was a clearTimeout/setTimeout pair for a five-second delay
|
|
123
|
+
// that could never elapse — 368 timer installs over a ten-second gesture,
|
|
124
|
+
// half of them these.
|
|
125
|
+
const cancelableAfterDelay = useDelayedFlag(shown, cancelDelayMs);
|
|
126
|
+
const cancelable = shown && cancelableAfterDelay;
|
|
127
|
+
// Rendered only while shown. The content chip is `pointerEvents:auto`, so
|
|
128
|
+
// leaving it mounted (merely transparent) in the idle state would silently
|
|
129
|
+
// swallow clicks/hovers over the top-center of every track it overlays. There
|
|
130
|
+
// is no fade transition, so mount/unmount is visually identical to toggling
|
|
131
|
+
// opacity anyway.
|
|
132
|
+
// `loading-overlay` is a readiness selector meaning work in flight, so the
|
|
133
|
+
// canceled state, which is finished, publishes its own
|
|
134
|
+
return shown ? (_jsx("span", { className: classes.overlay, "data-testid": canceled ? 'loading-overlay-canceled' : 'loading-overlay', children: _jsx("span", { className: classes.content, children: canceled ? (_jsxs("span", { className: classes.row, children: [_jsx("span", { className: classes.text, children: "Loading canceled" }), onRetry ? (_jsx(Tooltip, { title: "Retry", children: _jsx(IconButton, { size: "small", "data-testid": "loading-overlay-retry", onClick: () => {
|
|
135
|
+
onRetry();
|
|
136
|
+
}, children: _jsx(RefreshIcon, { fontSize: "inherit" }) }) })) : null] })) : (_jsxs(_Fragment, { children: [_jsxs("span", { className: classes.row, children: [_jsxs("span", { className: classes.text, children: [progressLabel(statusMessage || 'Loading', progress), hasProgress ? null : _jsx(LoadingDots, {})] }), onCancel && cancelable ? (_jsx(Tooltip, { title: "Cancel", children: _jsx(IconButton, { size: "small", "data-testid": "loading-overlay-cancel", onClick: () => {
|
|
137
|
+
onCancel();
|
|
138
|
+
}, children: _jsx(CloseIcon, { fontSize: "inherit" }) }) })) : null] }), hasProgress ? (_jsx(StatusProgressBar, { className: classes.bar, fraction: progress })) : null] })) }) })) : null;
|
|
139
|
+
}
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
import type { TypographyProps } from '@mui/material';
|
|
2
|
+
/**
|
|
3
|
+
* The shared "labelled ellipses + optional determinate bar" body used by the
|
|
4
|
+
* loading/refetch indicators. Renders a {@link LoadingEllipses} label — with the
|
|
5
|
+
* rounded percent appended via {@link progressLabel} when `fraction` is
|
|
6
|
+
* determinate — and a determinate {@link StatusProgressBar} only when a
|
|
7
|
+
* `fraction` is present (an indeterminate phase shows just the animated label,
|
|
8
|
+
* no bar). Callers own the surrounding layout and supply `barClassName` for the
|
|
9
|
+
* bar width.
|
|
10
|
+
*/
|
|
11
|
+
export default function LoadingProgress({ message, fraction, variant, barClassName, }: {
|
|
12
|
+
message?: string;
|
|
13
|
+
fraction?: number;
|
|
14
|
+
variant?: TypographyProps['variant'];
|
|
15
|
+
barClassName?: string;
|
|
16
|
+
}): import("react").JSX.Element;
|