@jbrowse/core 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (204) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +20 -4
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -558
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -473
  4. package/BaseFeatureWidget/index.d.ts +2 -2
  5. package/BaseFeatureWidget/index.js +88 -124
  6. package/BaseFeatureWidget/types.d.ts +1 -0
  7. package/BaseFeatureWidget/types.js +1 -4
  8. package/BaseFeatureWidget/util.js +40 -75
  9. package/CorePlugin.js +55 -94
  10. package/Plugin.js +9 -34
  11. package/PluginLoader.js +153 -422
  12. package/PluginManager.d.ts +84 -117
  13. package/PluginManager.js +377 -666
  14. package/ReExports/Attributes.d.ts +2 -0
  15. package/ReExports/Attributes.js +5 -0
  16. package/ReExports/BaseCard.d.ts +2 -0
  17. package/ReExports/BaseCard.js +5 -0
  18. package/ReExports/DataGrid.d.ts +2 -0
  19. package/ReExports/DataGrid.js +6 -0
  20. package/ReExports/FeatureDetails.d.ts +2 -0
  21. package/ReExports/FeatureDetails.js +5 -0
  22. package/ReExports/index.js +6 -12
  23. package/ReExports/list.d.ts +5 -0
  24. package/ReExports/list.js +271 -7
  25. package/ReExports/material-ui-colors.d.ts +1 -19
  26. package/ReExports/material-ui-colors.js +16 -158
  27. package/ReExports/modules.d.ts +68 -109
  28. package/ReExports/modules.js +455 -244
  29. package/TextSearch/BaseResults.js +51 -123
  30. package/TextSearch/TextSearchManager.d.ts +3 -1
  31. package/TextSearch/TextSearchManager.js +66 -144
  32. package/assemblyManager/assembly.js +280 -554
  33. package/assemblyManager/assemblyConfigSchema.js +47 -64
  34. package/assemblyManager/assemblyManager.d.ts +12 -10
  35. package/assemblyManager/assemblyManager.js +126 -270
  36. package/assemblyManager/index.js +9 -22
  37. package/configuration/configurationSchema.js +167 -203
  38. package/configuration/configurationSlot.js +248 -326
  39. package/configuration/index.js +19 -35
  40. package/configuration/util.d.ts +1 -1
  41. package/configuration/util.js +131 -173
  42. package/data_adapters/BaseAdapter.d.ts +2 -2
  43. package/data_adapters/BaseAdapter.js +132 -521
  44. package/data_adapters/CytobandAdapter.js +40 -126
  45. package/data_adapters/dataAdapterCache.js +77 -158
  46. package/package.json +16 -18
  47. package/pluggableElementTypes/AdapterType.js +24 -79
  48. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  49. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  50. package/pluggableElementTypes/ConnectionType.js +22 -65
  51. package/pluggableElementTypes/DisplayType.js +35 -82
  52. package/pluggableElementTypes/InternetAccountType.js +23 -64
  53. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  54. package/pluggableElementTypes/RpcMethodType.js +85 -427
  55. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  56. package/pluggableElementTypes/TrackType.js +26 -70
  57. package/pluggableElementTypes/ViewType.js +21 -63
  58. package/pluggableElementTypes/WidgetType.js +21 -64
  59. package/pluggableElementTypes/index.d.ts +4 -3
  60. package/pluggableElementTypes/index.js +42 -125
  61. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  62. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +10 -10
  63. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  64. package/pluggableElementTypes/models/BaseTrackModel.d.ts +1 -1
  65. package/pluggableElementTypes/models/BaseTrackModel.js +139 -200
  66. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  67. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  68. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  69. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  70. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  71. package/pluggableElementTypes/models/index.js +21 -70
  72. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  73. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  74. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  75. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  76. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  77. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  78. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  79. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +2 -2
  80. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  81. package/pluggableElementTypes/renderers/index.js +19 -62
  82. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  83. package/rpc/BaseRpcDriver.js +169 -405
  84. package/rpc/MainThreadRpcDriver.js +27 -150
  85. package/rpc/RpcManager.js +58 -159
  86. package/rpc/WebWorkerRpcDriver.js +54 -171
  87. package/rpc/configSchema.js +25 -49
  88. package/rpc/coreRpcMethods.d.ts +1 -3
  89. package/rpc/coreRpcMethods.js +221 -959
  90. package/rpc/remoteAbortSignals.js +46 -70
  91. package/tsconfig.build.tsbuildinfo +1 -1
  92. package/ui/AboutDialog.js +107 -158
  93. package/ui/App.js +157 -261
  94. package/ui/AssemblySelector.d.ts +1 -1
  95. package/ui/AssemblySelector.js +59 -115
  96. package/ui/CascadingMenu.js +100 -199
  97. package/ui/ColorPicker.d.ts +16 -0
  98. package/ui/ColorPicker.js +97 -0
  99. package/ui/Drawer.js +28 -58
  100. package/ui/DrawerWidget.js +109 -209
  101. package/ui/DropDownMenu.d.ts +0 -8
  102. package/ui/DropDownMenu.js +60 -97
  103. package/ui/EditableTypography.d.ts +1 -1
  104. package/ui/EditableTypography.js +87 -155
  105. package/ui/ErrorMessage.js +41 -66
  106. package/ui/FactoryResetDialog.js +24 -57
  107. package/ui/FatalErrorDialog.js +59 -91
  108. package/ui/FileSelector/FileSelector.js +123 -189
  109. package/ui/FileSelector/LocalFileChooser.js +44 -71
  110. package/ui/FileSelector/UrlChooser.js +17 -38
  111. package/ui/FileSelector/index.js +6 -12
  112. package/ui/Icons.d.ts +1 -1
  113. package/ui/Icons.js +45 -69
  114. package/ui/Logo.js +57 -110
  115. package/ui/Menu.d.ts +1 -1
  116. package/ui/Menu.js +232 -355
  117. package/ui/PrerenderedCanvas.js +63 -78
  118. package/ui/ResizeHandle.js +87 -114
  119. package/ui/ReturnToImportFormDialog.js +32 -59
  120. package/ui/SanitizedHTML.js +63 -52
  121. package/ui/Snackbar.js +74 -99
  122. package/ui/SnackbarModel.js +37 -51
  123. package/ui/Tooltip.d.ts +3 -1
  124. package/ui/Tooltip.js +49 -74
  125. package/ui/ViewContainer.js +113 -183
  126. package/ui/colors.d.ts +10 -0
  127. package/ui/colors.js +78 -0
  128. package/ui/index.js +51 -181
  129. package/ui/react-colorful.d.ts +17 -0
  130. package/ui/react-colorful.js +455 -0
  131. package/ui/theme.d.ts +279 -131
  132. package/ui/theme.js +197 -225
  133. package/util/Base1DUtils.d.ts +32 -0
  134. package/util/Base1DUtils.js +174 -0
  135. package/util/Base1DViewModel.d.ts +16 -37
  136. package/util/Base1DViewModel.js +116 -295
  137. package/util/QuickLRU.js +84 -332
  138. package/util/TimeTraveller.d.ts +19 -0
  139. package/util/TimeTraveller.js +86 -0
  140. package/util/aborting.js +49 -127
  141. package/util/analytics.js +91 -154
  142. package/util/blockTypes.js +106 -240
  143. package/util/calculateDynamicBlocks.js +98 -128
  144. package/util/calculateStaticBlocks.js +105 -125
  145. package/util/color/cssColorsLevel4.js +156 -160
  146. package/util/color/index.js +33 -55
  147. package/util/compositeMap.js +49 -333
  148. package/util/formatFastaStrings.js +9 -14
  149. package/util/idMaker.js +18 -31
  150. package/util/index.d.ts +18 -39
  151. package/util/index.js +743 -1236
  152. package/util/io/RemoteFileWithRangeCache.js +88 -257
  153. package/util/io/index.js +95 -169
  154. package/util/jexl.js +60 -115
  155. package/util/jexlStrings.js +24 -29
  156. package/util/layouts/BaseLayout.js +1 -4
  157. package/util/layouts/GranularRectLayout.js +388 -557
  158. package/util/layouts/MultiLayout.js +41 -109
  159. package/util/layouts/PrecomputedLayout.js +56 -114
  160. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  161. package/util/layouts/SceneGraph.js +127 -197
  162. package/util/layouts/index.js +29 -66
  163. package/util/mst-reflection.js +55 -71
  164. package/util/offscreenCanvasPonyfill.js +66 -134
  165. package/util/offscreenCanvasUtils.d.ts +2 -7
  166. package/util/offscreenCanvasUtils.js +49 -146
  167. package/util/range.js +29 -40
  168. package/util/rxjs.js +20 -27
  169. package/util/simpleFeature.js +88 -152
  170. package/util/stats.js +91 -151
  171. package/util/tracks.js +130 -171
  172. package/util/types/index.d.ts +3 -3
  173. package/util/types/index.js +110 -179
  174. package/util/types/mst.d.ts +3 -3
  175. package/util/types/mst.js +91 -142
  176. package/util/types/util.js +1 -4
  177. package/util/when.js +54 -101
  178. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  179. package/BaseFeatureWidget/index.test.js +0 -51
  180. package/TextSearch/BaseResults.test.js +0 -42
  181. package/configuration/configurationSchema.test.js +0 -266
  182. package/configuration/configurationSlot.test.js +0 -69
  183. package/configuration/util.test.js +0 -39
  184. package/data_adapters/BaseAdapter.test.js +0 -200
  185. package/declare.d.js +0 -1
  186. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  187. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  188. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  189. package/rpc/BaseRpcDriver.test.js +0 -540
  190. package/rpc/declaration.d.js +0 -1
  191. package/ui/FatalErrorDialog.test.js +0 -82
  192. package/ui/SanitizedHTML.test.js +0 -36
  193. package/ui/theme.test.js +0 -111
  194. package/util/Base1DViewModel.test.js +0 -130
  195. package/util/calculateDynamicBlocks.test.js +0 -74
  196. package/util/calculateStaticBlocks.test.js +0 -297
  197. package/util/declare.d.js +0 -1
  198. package/util/formatFastaStrings.test.js +0 -40
  199. package/util/index.test.js +0 -213
  200. package/util/jexlStrings.test.js +0 -48
  201. package/util/layouts/GranularRectLayout.test.js +0 -99
  202. package/util/range.test.js +0 -64
  203. package/util/simpleFeature.test.js +0 -34
  204. package/util/stats.test.js +0 -172
@@ -0,0 +1,2 @@
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+ import { Attributes } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
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+ export default Attributes;
@@ -0,0 +1,5 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ // convert named export to default for lazy react
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+ const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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+ exports.default = BaseFeatureDetail_1.Attributes;
@@ -0,0 +1,2 @@
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+ import { BaseCard } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
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+ export default BaseCard;
@@ -0,0 +1,5 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ // convert named export to default for lazy react
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+ const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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+ exports.default = BaseFeatureDetail_1.BaseCard;
@@ -0,0 +1,2 @@
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+ import { DataGrid } from '@mui/x-data-grid';
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+ export { DataGrid as default };
@@ -0,0 +1,6 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = void 0;
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+ // convert named export to default for lazy react
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+ const x_data_grid_1 = require("@mui/x-data-grid");
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+ Object.defineProperty(exports, "default", { enumerable: true, get: function () { return x_data_grid_1.DataGrid; } });
@@ -0,0 +1,2 @@
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+ import { FeatureDetails } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
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+ export default FeatureDetails;
@@ -0,0 +1,5 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ // convert named export to default for lazy react
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+ const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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+ exports.default = BaseFeatureDetail_1.FeatureDetails;
@@ -1,13 +1,7 @@
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  "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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- });
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- exports.default = void 0;
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-
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- var _modules = _interopRequireDefault(require("./modules"));
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-
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- var _default = _modules.default;
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- exports.default = _default;
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const modules_1 = __importDefault(require("./modules"));
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+ exports.default = modules_1.default;
@@ -1,2 +1,7 @@
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+ /**
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+ * Used by plugin build systems to determine if a module is provided by JBrowse
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+ * globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
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+ * sure this is in sync with the re-exported modules.
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+ */
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  declare const _default: string[];
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  export default _default;
package/ReExports/list.js CHANGED
@@ -1,8 +1,272 @@
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  "use strict";
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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- });
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- exports.default = void 0;
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- var _default = ['mobx', 'mobx-state-tree', 'react', 'react-dom', 'mobx-react', 'prop-types', '@material-ui/core', '@material-ui/core/SvgIcon', '@material-ui/core/utils', '@material-ui/lab', '@mui/x-data-grid', '@jbrowse/core/Plugin', '@jbrowse/core/pluggableElementTypes', '@jbrowse/core/pluggableElementTypes/ViewType', '@jbrowse/core/pluggableElementTypes/AdapterType', '@jbrowse/core/pluggableElementTypes/DisplayType', '@jbrowse/core/pluggableElementTypes/TrackType', '@jbrowse/core/pluggableElementTypes/WidgetType', '@jbrowse/core/pluggableElementTypes/models', '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType', '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType', '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType', '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType', '@jbrowse/core/pluggableElementTypes/renderers/RendererType', '@jbrowse/core/configuration', '@jbrowse/core/util/types/mst', '@jbrowse/core/ui', '@jbrowse/core/util', '@jbrowse/core/util/color', '@jbrowse/core/util/layouts', '@jbrowse/core/util/tracks', '@jbrowse/core/util/Base1DViewModel', '@jbrowse/core/util/io', '@jbrowse/core/util/mst-reflection', '@jbrowse/core/util/rxjs', '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail', '@jbrowse/core/data_adapters/BaseAdapter'];
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- exports.default = _default;
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ /**
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+ * Used by plugin build systems to determine if a module is provided by JBrowse
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+ * globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
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+ * sure this is in sync with the re-exported modules.
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+ */
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+ exports.default = [
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+ 'mobx',
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+ 'mobx-state-tree',
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+ 'react',
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+ 'react-dom',
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+ 'mobx-react',
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+ '@mui/x-data-grid',
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+ '@mui/material/utils',
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+ '@material-ui/core/utils',
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+ 'tss-react/mui',
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+ '@material-ui/core',
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+ '@mui/material',
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+ 'prop-types',
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+ '@mui/material/styles',
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+ '@material-ui/core/styles',
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+ '@material-ui/core/Accordion',
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+ '@material-ui/core/AccordionActions',
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+ '@material-ui/core/AccordionDetails',
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+ '@material-ui/core/Alert',
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+ '@material-ui/core/AlertTitle',
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+ '@material-ui/core/Autocomplete',
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+ '@material-ui/core/Avatar',
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+ '@material-ui/core/AvatarGroup',
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+ '@material-ui/core/Backdrop',
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+ '@material-ui/core/Badge',
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+ '@material-ui/core/Box',
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+ '@material-ui/core/Breadcrumbs',
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+ '@material-ui/core/Button',
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+ '@material-ui/core/ButtonGroup',
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+ '@material-ui/core/Card',
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+ '@material-ui/core/CardActions',
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+ '@material-ui/core/CardActionArea',
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+ '@material-ui/core/CardContent',
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+ '@material-ui/core/CardHeader',
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+ '@material-ui/core/CardMedia',
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+ '@material-ui/core/CircularProgress',
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+ '@material-ui/core/Collapse',
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+ '@material-ui/core/ClickAwayListener',
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+ '@material-ui/core/Chip',
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+ '@material-ui/core/Checkbox',
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+ '@material-ui/core/Container',
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+ '@material-ui/core/Dialog',
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+ '@material-ui/core/DialogActions',
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+ '@material-ui/core/DialogTitle',
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+ '@material-ui/core/DialogContent',
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+ '@material-ui/core/DialogContentText',
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+ '@material-ui/core/Divider',
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+ '@material-ui/core/Drawer',
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+ '@material-ui/core/Fab',
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+ '@material-ui/core/Fade',
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+ '@material-ui/core/FilledInput',
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+ '@material-ui/core/FormLabel',
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+ '@material-ui/core/FormControl',
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+ '@material-ui/core/FormControlLabel',
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+ '@material-ui/core/FormHelperText',
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+ '@material-ui/core/FormGroup',
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+ '@material-ui/core/Grid',
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+ '@material-ui/core/Grow',
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+ '@material-ui/core/Icon',
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+ '@material-ui/core/IconButton',
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+ '@material-ui/core/Input',
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+ '@material-ui/core/InputBase',
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+ '@material-ui/core/InputLabel',
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+ '@material-ui/core/InputAdornment',
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+ '@material-ui/core/Link',
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+ '@material-ui/core/LinearProgress',
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+ '@material-ui/core/List',
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+ '@material-ui/core/ListItem',
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+ '@material-ui/core/ListItemAvatar',
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+ '@material-ui/core/ListItemSecondaryAction',
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+ '@material-ui/core/ListItemIcon',
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+ '@material-ui/core/ListSubheader',
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+ '@material-ui/core/ListItemText',
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+ '@material-ui/core/Menu',
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+ '@material-ui/core/MenuItem',
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+ '@material-ui/core/MenuList',
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+ '@material-ui/core/Modal',
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+ '@material-ui/core/NativeSelect',
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+ '@material-ui/core/OutlinedInput',
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+ '@material-ui/core/Pagination',
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+ '@material-ui/core/PaginationItem',
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+ '@material-ui/core/Paper',
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+ '@material-ui/core/Popover',
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+ '@material-ui/core/Popper',
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+ '@material-ui/core/Portal',
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+ '@material-ui/core/Radio',
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+ '@material-ui/core/RadioGroup',
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+ '@material-ui/core/Rating',
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+ '@material-ui/core/ScopedCssBaseline',
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+ '@material-ui/core/Select',
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+ '@material-ui/core/Skeleton',
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+ '@material-ui/core/Slider',
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+ '@material-ui/core/Snackbar',
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+ '@material-ui/core/SnackbarContent',
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+ '@material-ui/core/SpeedDial',
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+ '@material-ui/core/SpeedDialAction',
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+ '@material-ui/core/SpeedDialIcon',
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+ '@material-ui/core/Stack',
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+ '@material-ui/core/Step',
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+ '@material-ui/core/StepButton',
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+ '@material-ui/core/StepConnector',
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+ '@material-ui/core/StepLabel',
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+ '@material-ui/core/StepIcon',
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+ '@material-ui/core/Stepper',
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+ '@material-ui/core/SvgIcon',
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+ '@material-ui/core/Switch',
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+ '@material-ui/core/Tab',
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+ '@material-ui/core/Table',
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+ '@material-ui/core/TableBody',
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+ '@material-ui/core/TableCell',
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+ '@material-ui/core/TableContainer',
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+ '@material-ui/core/TableFooter',
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+ '@material-ui/core/TableHead',
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+ '@material-ui/core/TablePagination',
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+ '@material-ui/core/TableRow',
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+ '@material-ui/core/TableSortLabel',
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+ '@material-ui/core/Tabs',
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+ '@material-ui/core/TextField',
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+ '@material-ui/core/TextareaAutosize',
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+ '@material-ui/core/ToggleButton',
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+ '@material-ui/core/ToggleButtonGroup',
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+ '@material-ui/core/Toolbar',
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+ '@material-ui/core/Tooltip',
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+ '@material-ui/core/Typography',
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+ '@mui/material/Accordion',
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+ '@mui/material/AccordionActions',
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+ '@mui/material/AccordionDetails',
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+ '@mui/material/Alert',
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+ '@mui/material/AlertTitle',
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+ '@mui/material/Autocomplete',
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+ '@mui/material/Avatar',
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+ '@mui/material/AvatarGroup',
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+ '@mui/material/Backdrop',
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+ '@mui/material/Badge',
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+ '@mui/material/Box',
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+ '@mui/material/Breadcrumbs',
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+ '@mui/material/Button',
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+ '@mui/material/ButtonGroup',
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+ '@mui/material/Card',
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+ '@mui/material/CardActions',
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+ '@mui/material/CardActionArea',
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+ '@mui/material/CardContent',
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+ '@mui/material/CardHeader',
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+ '@mui/material/CardMedia',
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+ '@mui/material/CircularProgress',
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+ '@mui/material/Collapse',
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+ '@mui/material/ClickAwayListener',
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+ '@mui/material/Chip',
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+ '@mui/material/Checkbox',
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+ '@mui/material/Container',
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+ '@mui/material/Dialog',
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+ '@mui/material/DialogActions',
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+ '@mui/material/DialogTitle',
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+ '@mui/material/DialogContent',
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+ '@mui/material/DialogContentText',
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+ '@mui/material/Divider',
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+ '@mui/material/Drawer',
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+ '@mui/material/Fab',
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+ '@mui/material/Fade',
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+ '@mui/material/FilledInput',
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+ '@mui/material/FormLabel',
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+ '@mui/material/FormControl',
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+ '@mui/material/FormControlLabel',
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+ '@mui/material/FormHelperText',
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+ '@mui/material/FormGroup',
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+ '@mui/material/Grid',
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+ '@mui/material/Grow',
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+ '@mui/material/Icon',
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+ '@mui/material/IconButton',
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+ '@mui/material/Input',
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+ '@mui/material/InputBase',
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+ '@mui/material/InputLabel',
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+ '@mui/material/InputAdornment',
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+ '@mui/material/Link',
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+ '@mui/material/LinearProgress',
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+ '@mui/material/List',
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+ '@mui/material/ListItem',
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+ '@mui/material/ListItemAvatar',
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+ '@mui/material/ListItemSecondaryAction',
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+ '@mui/material/ListItemIcon',
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+ '@mui/material/ListSubheader',
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+ '@mui/material/ListItemText',
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+ '@mui/material/Menu',
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+ '@mui/material/MenuItem',
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+ '@mui/material/MenuList',
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+ '@mui/material/Modal',
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+ '@mui/material/NativeSelect',
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+ '@mui/material/OutlinedInput',
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+ '@mui/material/Pagination',
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+ '@mui/material/PaginationItem',
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+ '@mui/material/Paper',
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+ '@mui/material/Popover',
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+ '@mui/material/Popper',
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+ '@mui/material/Portal',
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+ '@mui/material/Radio',
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+ '@mui/material/RadioGroup',
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+ '@mui/material/Rating',
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+ '@mui/material/ScopedCssBaseline',
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+ '@mui/material/Select',
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+ '@mui/material/Skeleton',
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+ '@mui/material/Slider',
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+ '@mui/material/Snackbar',
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+ '@mui/material/SnackbarContent',
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+ '@mui/material/SpeedDial',
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+ '@mui/material/SpeedDialAction',
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+ '@mui/material/SpeedDialIcon',
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+ '@mui/material/Stack',
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+ '@mui/material/Step',
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+ '@mui/material/StepButton',
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+ '@mui/material/StepConnector',
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+ '@mui/material/StepLabel',
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+ '@mui/material/StepIcon',
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+ '@mui/material/Stepper',
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+ '@mui/material/SvgIcon',
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+ '@mui/material/Switch',
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+ '@mui/material/Tab',
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+ '@mui/material/Table',
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+ '@mui/material/TableBody',
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+ '@mui/material/TableCell',
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+ '@mui/material/TableContainer',
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+ '@mui/material/TableFooter',
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+ '@mui/material/TableHead',
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+ '@mui/material/TablePagination',
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+ '@mui/material/TableRow',
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+ '@mui/material/TableSortLabel',
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+ '@mui/material/Tabs',
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+ '@mui/material/TextField',
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+ '@mui/material/TextareaAutosize',
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+ '@mui/material/ToggleButton',
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+ '@mui/material/ToggleButtonGroup',
238
+ '@mui/material/Toolbar',
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+ '@mui/material/Tooltip',
240
+ '@mui/material/Typography',
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+ '@material-ui/lab/ToggleButton',
242
+ '@material-ui/lab/ToggleButtonGroup',
243
+ '@material-ui/lab/Autocomplete',
244
+ '@material-ui/lab/Alert',
245
+ '@material-ui/lab',
246
+ '@jbrowse/core/Plugin',
247
+ '@jbrowse/core/pluggableElementTypes',
248
+ '@jbrowse/core/pluggableElementTypes/ViewType',
249
+ '@jbrowse/core/pluggableElementTypes/AdapterType',
250
+ '@jbrowse/core/pluggableElementTypes/DisplayType',
251
+ '@jbrowse/core/pluggableElementTypes/TrackType',
252
+ '@jbrowse/core/pluggableElementTypes/WidgetType',
253
+ '@jbrowse/core/pluggableElementTypes/models',
254
+ '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType',
255
+ '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType',
256
+ '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType',
257
+ '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType',
258
+ '@jbrowse/core/pluggableElementTypes/renderers/RendererType',
259
+ '@jbrowse/core/configuration',
260
+ '@jbrowse/core/util/types/mst',
261
+ '@jbrowse/core/ui',
262
+ '@jbrowse/core/util',
263
+ '@jbrowse/core/util/color',
264
+ '@jbrowse/core/util/layouts',
265
+ '@jbrowse/core/util/tracks',
266
+ '@jbrowse/core/util/Base1DViewModel',
267
+ '@jbrowse/core/util/io',
268
+ '@jbrowse/core/util/mst-reflection',
269
+ '@jbrowse/core/util/rxjs',
270
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
271
+ '@jbrowse/core/data_adapters/BaseAdapter',
272
+ ];
@@ -1,19 +1 @@
1
- export { default as red } from "@material-ui/core/colors/red";
2
- export { default as pink } from "@material-ui/core/colors/pink";
3
- export { default as purple } from "@material-ui/core/colors/purple";
4
- export { default as deepPurple } from "@material-ui/core/colors/deepPurple";
5
- export { default as indigo } from "@material-ui/core/colors/indigo";
6
- export { default as blue } from "@material-ui/core/colors/blue";
7
- export { default as lightBlue } from "@material-ui/core/colors/lightBlue";
8
- export { default as cyan } from "@material-ui/core/colors/cyan";
9
- export { default as teal } from "@material-ui/core/colors/teal";
10
- export { default as green } from "@material-ui/core/colors/green";
11
- export { default as lightGreen } from "@material-ui/core/colors/lightGreen";
12
- export { default as lime } from "@material-ui/core/colors/lime";
13
- export { default as yellow } from "@material-ui/core/colors/yellow";
14
- export { default as amber } from "@material-ui/core/colors/amber";
15
- export { default as orange } from "@material-ui/core/colors/orange";
16
- export { default as deepOrange } from "@material-ui/core/colors/deepOrange";
17
- export { default as brown } from "@material-ui/core/colors/brown";
18
- export { default as grey } from "@material-ui/core/colors/grey";
19
- export { default as blueGrey } from "@material-ui/core/colors/blueGrey";
1
+ export * from "@mui/material/colors";
@@ -1,159 +1,17 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- Object.defineProperty(exports, "amber", {
9
- enumerable: true,
10
- get: function get() {
11
- return _amber.default;
12
- }
13
- });
14
- Object.defineProperty(exports, "blue", {
15
- enumerable: true,
16
- get: function get() {
17
- return _blue.default;
18
- }
19
- });
20
- Object.defineProperty(exports, "blueGrey", {
21
- enumerable: true,
22
- get: function get() {
23
- return _blueGrey.default;
24
- }
25
- });
26
- Object.defineProperty(exports, "brown", {
27
- enumerable: true,
28
- get: function get() {
29
- return _brown.default;
30
- }
31
- });
32
- Object.defineProperty(exports, "cyan", {
33
- enumerable: true,
34
- get: function get() {
35
- return _cyan.default;
36
- }
37
- });
38
- Object.defineProperty(exports, "deepOrange", {
39
- enumerable: true,
40
- get: function get() {
41
- return _deepOrange.default;
42
- }
43
- });
44
- Object.defineProperty(exports, "deepPurple", {
45
- enumerable: true,
46
- get: function get() {
47
- return _deepPurple.default;
48
- }
49
- });
50
- Object.defineProperty(exports, "green", {
51
- enumerable: true,
52
- get: function get() {
53
- return _green.default;
54
- }
55
- });
56
- Object.defineProperty(exports, "grey", {
57
- enumerable: true,
58
- get: function get() {
59
- return _grey.default;
60
- }
61
- });
62
- Object.defineProperty(exports, "indigo", {
63
- enumerable: true,
64
- get: function get() {
65
- return _indigo.default;
66
- }
67
- });
68
- Object.defineProperty(exports, "lightBlue", {
69
- enumerable: true,
70
- get: function get() {
71
- return _lightBlue.default;
72
- }
73
- });
74
- Object.defineProperty(exports, "lightGreen", {
75
- enumerable: true,
76
- get: function get() {
77
- return _lightGreen.default;
78
- }
79
- });
80
- Object.defineProperty(exports, "lime", {
81
- enumerable: true,
82
- get: function get() {
83
- return _lime.default;
84
- }
85
- });
86
- Object.defineProperty(exports, "orange", {
87
- enumerable: true,
88
- get: function get() {
89
- return _orange.default;
90
- }
91
- });
92
- Object.defineProperty(exports, "pink", {
93
- enumerable: true,
94
- get: function get() {
95
- return _pink.default;
96
- }
97
- });
98
- Object.defineProperty(exports, "purple", {
99
- enumerable: true,
100
- get: function get() {
101
- return _purple.default;
102
- }
103
- });
104
- Object.defineProperty(exports, "red", {
105
- enumerable: true,
106
- get: function get() {
107
- return _red.default;
108
- }
109
- });
110
- Object.defineProperty(exports, "teal", {
111
- enumerable: true,
112
- get: function get() {
113
- return _teal.default;
114
- }
115
- });
116
- Object.defineProperty(exports, "yellow", {
117
- enumerable: true,
118
- get: function get() {
119
- return _yellow.default;
120
- }
121
- });
122
-
123
- var _red = _interopRequireDefault(require("@material-ui/core/colors/red"));
124
-
125
- var _pink = _interopRequireDefault(require("@material-ui/core/colors/pink"));
126
-
127
- var _purple = _interopRequireDefault(require("@material-ui/core/colors/purple"));
128
-
129
- var _deepPurple = _interopRequireDefault(require("@material-ui/core/colors/deepPurple"));
130
-
131
- var _indigo = _interopRequireDefault(require("@material-ui/core/colors/indigo"));
132
-
133
- var _blue = _interopRequireDefault(require("@material-ui/core/colors/blue"));
134
-
135
- var _lightBlue = _interopRequireDefault(require("@material-ui/core/colors/lightBlue"));
136
-
137
- var _cyan = _interopRequireDefault(require("@material-ui/core/colors/cyan"));
138
-
139
- var _teal = _interopRequireDefault(require("@material-ui/core/colors/teal"));
140
-
141
- var _green = _interopRequireDefault(require("@material-ui/core/colors/green"));
142
-
143
- var _lightGreen = _interopRequireDefault(require("@material-ui/core/colors/lightGreen"));
144
-
145
- var _lime = _interopRequireDefault(require("@material-ui/core/colors/lime"));
146
-
147
- var _yellow = _interopRequireDefault(require("@material-ui/core/colors/yellow"));
148
-
149
- var _amber = _interopRequireDefault(require("@material-ui/core/colors/amber"));
150
-
151
- var _orange = _interopRequireDefault(require("@material-ui/core/colors/orange"));
152
-
153
- var _deepOrange = _interopRequireDefault(require("@material-ui/core/colors/deepOrange"));
154
-
155
- var _brown = _interopRequireDefault(require("@material-ui/core/colors/brown"));
156
-
157
- var _grey = _interopRequireDefault(require("@material-ui/core/colors/grey"));
158
-
159
- var _blueGrey = _interopRequireDefault(require("@material-ui/core/colors/blueGrey"));
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
14
+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
15
+ };
16
+ Object.defineProperty(exports, "__esModule", { value: true });
17
+ __exportStar(require("@mui/material/colors"), exports);