@jbrowse/core 1.7.11 → 2.1.0

package/pluggableElementTypes/RpcMethodType.js

@@ -1,433 +1,91 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
-
-var _tracks = require("../util/tracks");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _types = require("../util/types");
-
-var _remoteAbortSignals = require("../rpc/remoteAbortSignals");
-
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
-
-function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
-
-function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
-  (0, _inherits2.default)(RpcMethodType, _PluggableElementBase);
-
-  var _super = _createSuper(RpcMethodType);
-
-  function RpcMethodType(pluginManager) {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, RpcMethodType);
-    _this = _super.call(this, {
-      name: ''
-    });
-    _this.pluginManager = pluginManager;
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'UNKNOWN');
-    return _this;
-  }
-
-  (0, _createClass2.default)(RpcMethodType, [{
-    key: "serializeArguments",
-    value: function () {
-      var _serializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, _rpcDriverClassName) {
-        var blobMap;
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
-                blobMap = (0, _tracks.getBlobMap)();
-                _context.next = 3;
-                return this.augmentLocationObjects(args);
-
-              case 3:
-                return _context.abrupt("return", _objectSpread(_objectSpread({}, args), {}, {
-                  blobMap: blobMap
-                }));
-
-              case 4:
-              case "end":
-                return _context.stop();
-            }
-          }
-        }, _callee, this);
-      }));
-
-      function serializeArguments(_x, _x2) {
-        return _serializeArguments.apply(this, arguments);
-      }
-
-      return serializeArguments;
-    }()
-  }, {
-    key: "serializeNewAuthArguments",
-    value: function () {
-      var _serializeNewAuthArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(loc) {
-        var rootModel, account;
-        return _regenerator.default.wrap(function _callee2$(_context2) {
-          while (1) {
-            switch (_context2.prev = _context2.next) {
-              case 0:
-                rootModel = this.pluginManager.rootModel; // args dont need auth or already have auth
-
-                if (!(!(0, _types.isAppRootModel)(rootModel) || loc.internetAccountPreAuthorization)) {
-                  _context2.next = 3;
-                  break;
-                }
-
-                return _context2.abrupt("return", loc);
-
-              case 3:
-                account = rootModel === null || rootModel === void 0 ? void 0 : rootModel.findAppropriateInternetAccount(loc);
-
-                if (!account) {
-                  _context2.next = 8;
-                  break;
-                }
-
-                _context2.next = 7;
-                return account.getPreAuthorizationInformation(loc);
-
-              case 7:
-                loc.internetAccountPreAuthorization = _context2.sent;
-
-              case 8:
-                return _context2.abrupt("return", loc);
-
-              case 9:
-              case "end":
-                return _context2.stop();
-            }
-          }
-        }, _callee2, this);
-      }));
-
-      function serializeNewAuthArguments(_x3) {
-        return _serializeNewAuthArguments.apply(this, arguments);
-      }
-
-      return serializeNewAuthArguments;
-    }()
-  }, {
-    key: "deserializeArguments",
-    value: function () {
-      var _deserializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(serializedArgs, _rpcDriverClassName) {
-        var signal;
-        return _regenerator.default.wrap(function _callee3$(_context3) {
-          while (1) {
-            switch (_context3.prev = _context3.next) {
-              case 0:
-                if (serializedArgs.blobMap) {
-                  (0, _tracks.setBlobMap)(serializedArgs.blobMap);
-                }
-
-                signal = serializedArgs.signal;
-
-                if (!(signal && (0, _remoteAbortSignals.isRemoteAbortSignal)(signal))) {
-                  _context3.next = 4;
-                  break;
-                }
-
-                return _context3.abrupt("return", _objectSpread(_objectSpread({}, serializedArgs), {}, {
-                  signal: (0, _remoteAbortSignals.deserializeAbortSignal)(signal)
-                }));
-
-              case 4:
-                return _context3.abrupt("return", _objectSpread(_objectSpread({}, serializedArgs), {}, {
-                  signal: undefined
-                }));
-
-              case 5:
-              case "end":
-                return _context3.stop();
-            }
-          }
-        }, _callee3);
-      }));
-
-      function deserializeArguments(_x4, _x5) {
-        return _deserializeArguments.apply(this, arguments);
-      }
-
-      return deserializeArguments;
-    }()
-  }, {
-    key: "serializeReturn",
-    value: function () {
-      var _serializeReturn = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(originalReturn, _args, _rpcDriverClassName) {
-        return _regenerator.default.wrap(function _callee4$(_context4) {
-          while (1) {
-            switch (_context4.prev = _context4.next) {
-              case 0:
-                return _context4.abrupt("return", originalReturn);
-
-              case 1:
-              case "end":
-                return _context4.stop();
-            }
-          }
-        }, _callee4);
-      }));
-
-      function serializeReturn(_x6, _x7, _x8) {
-        return _serializeReturn.apply(this, arguments);
-      }
-
-      return serializeReturn;
-    }()
-  }, {
-    key: "deserializeReturn",
-    value: function () {
-      var _deserializeReturn = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(serializedReturn, _args, _rpcDriverClassName) {
-        var r, rootModel, retryAccount;
-        return _regenerator.default.wrap(function _callee5$(_context5) {
-          while (1) {
-            switch (_context5.prev = _context5.next) {
-              case 0:
-                rootModel = this.pluginManager.rootModel;
-                _context5.prev = 1;
-                _context5.next = 4;
-                return serializedReturn;
-
-              case 4:
-                r = _context5.sent;
-                _context5.next = 13;
-                break;
-
-              case 7:
-                _context5.prev = 7;
-                _context5.t0 = _context5["catch"](1);
-
-                if (!(0, _types.isAuthNeededException)(_context5.t0)) {
-                  _context5.next = 12;
-                  break;
-                }
-
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const PluggableElementBase_1 = __importDefault(require("./PluggableElementBase"));
+const tracks_1 = require("../util/tracks");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const types_1 = require("../util/types");
+const remoteAbortSignals_1 = require("../rpc/remoteAbortSignals");
+class RpcMethodType extends PluggableElementBase_1.default {
+    constructor(pluginManager) {
+        super({ name: '' });
+        this.pluginManager = pluginManager;
+        this.name = 'UNKNOWN';
+    }
+    async serializeArguments(args, _rpcDriverClassName) {
+        const blobMap = (0, tracks_1.getBlobMap)();
+        await this.augmentLocationObjects(args);
+        return { ...args, blobMap };
+    }
+    async serializeNewAuthArguments(loc) {
+        const rootModel = this.pluginManager.rootModel;
+        // args dont need auth or already have auth
+        if (!(0, types_1.isAppRootModel)(rootModel) || loc.internetAccountPreAuthorization) {
+            return loc;
+        }
+        const account = rootModel === null || rootModel === void 0 ? void 0 : rootModel.findAppropriateInternetAccount(loc);
+        if (account) {
+            loc.internetAccountPreAuthorization =
+                await account.getPreAuthorizationInformation(loc);
+        }
+        return loc;
+    }
+    async deserializeArguments(serializedArgs, _rpcDriverClassName) {
+        if (serializedArgs.blobMap) {
+            (0, tracks_1.setBlobMap)(serializedArgs.blobMap);
+        }
+        const { signal } = serializedArgs;
+        if (signal && (0, remoteAbortSignals_1.isRemoteAbortSignal)(signal)) {
+            return { ...serializedArgs, signal: (0, remoteAbortSignals_1.deserializeAbortSignal)(signal) };
+        }
+        return { ...serializedArgs, signal: undefined };
+    }
+    async serializeReturn(originalReturn, _args, _rpcDriverClassName) {
+        return originalReturn;
+    }
+    async deserializeReturn(serializedReturn, _args, _rpcDriverClassName) {
+        let r;
+        const { rootModel } = this.pluginManager;
+        try {
+            r = await serializedReturn;
+        }
+        catch (error) {
+            if ((0, types_1.isAuthNeededException)(error)) {
                 // @ts-ignore
-                retryAccount = rootModel === null || rootModel === void 0 ? void 0 : rootModel.createEphemeralInternetAccount("HTTPBasicInternetAccount-".concat(new URL(_context5.t0.url).origin), {}, _context5.t0.url);
-                throw new _types.RetryError('Retrying with created internet account', retryAccount.internetAccountId);
-
-              case 12:
-                throw _context5.t0;
-
-              case 13:
-                return _context5.abrupt("return", r);
-
-              case 14:
-              case "end":
-                return _context5.stop();
+                const retryAccount = rootModel === null || rootModel === void 0 ? void 0 : rootModel.createEphemeralInternetAccount(`HTTPBasicInternetAccount-${new URL(error.url).origin}`, {}, error.url);
+                throw new types_1.RetryError('Retrying with created internet account', retryAccount.internetAccountId);
             }
-          }
-        }, _callee5, this, [[1, 7]]);
-      }));
-
-      function deserializeReturn(_x9, _x10, _x11) {
-        return _deserializeReturn.apply(this, arguments);
-      }
-
-      return deserializeReturn;
-    }() // eslint-disable-next-line @typescript-eslint/no-explicit-any
-
-  }, {
-    key: "augmentLocationObjects",
-    value: function () {
-      var _augmentLocationObjects = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(thing) {
-        var _iterator, _step, val, _i, _Object$values, value, _iterator2, _step2, _val;
-
-        return _regenerator.default.wrap(function _callee6$(_context6) {
-          while (1) {
-            switch (_context6.prev = _context6.next) {
-              case 0:
-                if (!((0, _mobxStateTree.isStateTreeNode)(thing) && !(0, _mobxStateTree.isAlive)(thing))) {
-                  _context6.next = 2;
-                  break;
-                }
-
-                return _context6.abrupt("return", thing);
-
-              case 2:
-                if (!(0, _types.isUriLocation)(thing)) {
-                  _context6.next = 5;
-                  break;
-                }
-
-                _context6.next = 5;
-                return this.serializeNewAuthArguments(thing);
-
-              case 5:
-                if (!Array.isArray(thing)) {
-                  _context6.next = 23;
-                  break;
-                }
-
-                _iterator = _createForOfIteratorHelper(thing);
-                _context6.prev = 7;
-
-                _iterator.s();
-
-              case 9:
-                if ((_step = _iterator.n()).done) {
-                  _context6.next = 15;
-                  break;
-                }
-
-                val = _step.value;
-                _context6.next = 13;
-                return this.augmentLocationObjects(val);
-
-              case 13:
-                _context6.next = 9;
-                break;
-
-              case 15:
-                _context6.next = 20;
-                break;
-
-              case 17:
-                _context6.prev = 17;
-                _context6.t0 = _context6["catch"](7);
-
-                _iterator.e(_context6.t0);
-
-              case 20:
-                _context6.prev = 20;
-
-                _iterator.f();
-
-                return _context6.finish(20);
-
-              case 23:
-                if (!((0, _typeof2.default)(thing) === 'object' && thing !== null)) {
-                  _context6.next = 53;
-                  break;
-                }
-
-                _i = 0, _Object$values = Object.values(thing);
-
-              case 25:
-                if (!(_i < _Object$values.length)) {
-                  _context6.next = 53;
-                  break;
-                }
-
-                value = _Object$values[_i];
-
-                if (!Array.isArray(value)) {
-                  _context6.next = 47;
-                  break;
-                }
-
-                _iterator2 = _createForOfIteratorHelper(value);
-                _context6.prev = 29;
-
-                _iterator2.s();
-
-              case 31:
-                if ((_step2 = _iterator2.n()).done) {
-                  _context6.next = 37;
-                  break;
+            throw error;
+        }
+        return r;
+    }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    async augmentLocationObjects(thing) {
+        if ((0, mobx_state_tree_1.isStateTreeNode)(thing) && !(0, mobx_state_tree_1.isAlive)(thing)) {
+            return thing;
+        }
+        if ((0, types_1.isUriLocation)(thing)) {
+            await this.serializeNewAuthArguments(thing);
+        }
+        if (Array.isArray(thing)) {
+            for (const val of thing) {
+                await this.augmentLocationObjects(val);
+            }
+        }
+        if (typeof thing === 'object' && thing !== null) {
+            for (const value of Object.values(thing)) {
+                if (Array.isArray(value)) {
+                    for (const val of value) {
+                        await this.augmentLocationObjects(val);
+                    }
                 }
-
-                _val = _step2.value;
-                _context6.next = 35;
-                return this.augmentLocationObjects(_val);
-
-              case 35:
-                _context6.next = 31;
-                break;
-
-              case 37:
-                _context6.next = 42;
-                break;
-
-              case 39:
-                _context6.prev = 39;
-                _context6.t1 = _context6["catch"](29);
-
-                _iterator2.e(_context6.t1);
-
-              case 42:
-                _context6.prev = 42;
-
-                _iterator2.f();
-
-                return _context6.finish(42);
-
-              case 45:
-                _context6.next = 50;
-                break;
-
-              case 47:
-                if (!((0, _typeof2.default)(value) === 'object' && value !== null)) {
-                  _context6.next = 50;
-                  break;
+                else if (typeof value === 'object' && value !== null) {
+                    await this.augmentLocationObjects(value);
                 }
-
-                _context6.next = 50;
-                return this.augmentLocationObjects(value);
-
-              case 50:
-                _i++;
-                _context6.next = 25;
-                break;
-
-              case 53:
-              case "end":
-                return _context6.stop();
             }
-          }
-        }, _callee6, this, [[7, 17, 20, 23], [29, 39, 42, 45]]);
-      }));
-
-      function augmentLocationObjects(_x12) {
-        return _augmentLocationObjects.apply(this, arguments);
-      }
-
-      return augmentLocationObjects;
-    }()
-  }]);
-  return RpcMethodType;
-}(_PluggableElementBase2.default);
-
-exports.default = RpcMethodType;
+        }
+    }
+}
+exports.default = RpcMethodType;

package/pluggableElementTypes/TextSearchAdapterType.js

@@ -1,57 +1,18 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var TextSearchAdapterType = /*#__PURE__*/function (_PluggableElementBase) {
-  (0, _inherits2.default)(TextSearchAdapterType, _PluggableElementBase);
-
-  var _super = _createSuper(TextSearchAdapterType);
-
-  function TextSearchAdapterType(stuff) {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, TextSearchAdapterType);
-    _this = _super.call(this, stuff);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "AdapterClass", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "description", void 0);
-    _this.description = stuff.description;
-    _this.configSchema = stuff.configSchema;
-    _this.AdapterClass = stuff.AdapterClass;
-
-    if (!_this.AdapterClass) {
-      throw new Error("no AdapterClass defined for adapter type ".concat(_this.name));
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const PluggableElementBase_1 = __importDefault(require("./PluggableElementBase"));
+class TextSearchAdapterType extends PluggableElementBase_1.default {
+    constructor(stuff) {
+        super(stuff);
+        this.description = stuff.description;
+        this.configSchema = stuff.configSchema;
+        this.AdapterClass = stuff.AdapterClass;
+        if (!this.AdapterClass) {
+            throw new Error(`no AdapterClass defined for adapter type ${this.name}`);
+        }
     }
-
-    return _this;
-  }
-
-  return (0, _createClass2.default)(TextSearchAdapterType);
-}(_PluggableElementBase2.default);
-
-exports.default = TextSearchAdapterType;
+}
+exports.default = TextSearchAdapterType;